@galaxy-tool-util/schema 0.2.0 → 0.4.0

package/dist/workflow/raw/gxformat2.effect.js

@@ -37,6 +37,14 @@ export const DocumentedSchema = Schema.Struct({
     /** A documentation string for this object, or an array of strings which should be concatenated. */
     doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
 });
+export const RecordSchemaSchema = Schema.Struct({
+    /** Defines the fields of the record. */
+    fields: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.suspend(() => RecordFieldSchema).annotations({
+        identifier: "RecordFieldSchema",
+    })))),
+    /** Must be `record` */
+    type: Schema.Literal("record"),
+});
 /**
  * Define an enumerated type.
  */
@@ -46,14 +54,6 @@ export const EnumSchemaSchema = Schema.Struct({
     /** Must be `enum` */
     type: Schema.Literal("enum"),
 });
-export const RecordSchemaSchema = Schema.Struct({
-    /** Defines the fields of the record. */
-    fields: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.suspend(() => RecordFieldSchema).annotations({
-        identifier: "RecordFieldSchema",
-    })))),
-    /** Must be `record` */
-    type: Schema.Literal("record"),
-});
 export const ArraySchemaSchema = Schema.Struct({
     /** Defines the type of the array elements. */
     items: Schema.Union(PrimitiveTypeSchema, RecordSchemaSchema, EnumSchemaSchema, Schema.suspend(() => ArraySchemaSchema).annotations({
@@ -110,25 +110,6 @@ export const OutputParameterSchema = Schema.Struct({
     /** A documentation string for this object, or an array of strings which should be concatenated. */
     doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
 });
-/**
- * Describe an output parameter of a workflow.  The parameter must be
-connected to one parameter defined in the workflow that
-will provide the value of the output parameter. It is legal to
-connect a WorkflowInputParameter to a WorkflowOutputParameter.
- */
-export const WorkflowOutputParameterSchema = Schema.Struct({
-    ...OutputParameterSchema.fields,
-    /** The unique identifier for this object. */
-    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** A short, human-readable label of this object. */
-    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** A documentation string for this object, or an array of strings which should be concatenated. */
-    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
-    /** Specifies workflow parameter that supply the value of to the output parameter. */
-    outputSource: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** Specify valid types of data that may be assigned to this parameter. */
-    type: Schema.optional(Schema.Union(Schema.Null, GalaxyTypeSchema)),
-});
 /**
  * This field specifies the location of the step's node when rendered in the workflow editor.
  */
@@ -159,6 +140,25 @@ export const WorkflowInputParameterSchema = Schema.Struct({
     /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
     collection_type: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
 });
+/**
+ * Describe an output parameter of a workflow.  The parameter must be
+connected to one parameter defined in the workflow that
+will provide the value of the output parameter. It is legal to
+connect a WorkflowInputParameter to a WorkflowOutputParameter.
+ */
+export const WorkflowOutputParameterSchema = Schema.Struct({
+    ...OutputParameterSchema.fields,
+    /** The unique identifier for this object. */
+    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A short, human-readable label of this object. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A documentation string for this object, or an array of strings which should be concatenated. */
+    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+    /** Specifies workflow parameter that supply the value of to the output parameter. */
+    outputSource: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Specify valid types of data that may be assigned to this parameter. */
+    type: Schema.optional(Schema.Union(Schema.Null, GalaxyTypeSchema)),
+});
 /**
  * The base executable type in CWL is the `Process` object defined by the
 document.  Note that the `Process` object is abstract and cannot be
@@ -205,19 +205,38 @@ export const ReferencesToolSchema = Schema.Struct({
     /** The tool version corresponding used to run this step of the workflow. For tool shed installed tools, the ID generally uniquely specifies a version and this field is optional. */
     tool_version: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
 });
-export const SinkSchema = Schema.Struct({
-    /** Specifies one or more workflow parameters that will provide input to the underlying step parameter. */
-    source: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+/**
+ * Definition of an invocation report for this workflow. Currently the only
+field is 'markdown'.
+ */
+export const ReportSchema = Schema.Struct({
+    /** Galaxy flavored Markdown to define an invocation report. */
+    markdown: Schema.String,
 });
 /**
- * TODO:
+ * Base fields shared by all comment types.
  */
-export const WorkflowStepInputSchema = Schema.Struct({
-    ...IdentifiedSchema.fields,
-    ...SinkSchema.fields,
-    ...LabeledSchema.fields,
-    /** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`.  The default must be applied prior to scattering or evaluating `va... */
-    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+export const BaseCommentSchema = Schema.Struct({
+    /** Position of the comment on the editor canvas as ``[x, y]`` coordinates. */
+    position: Schema.optional(Schema.Union(Schema.Array(Schema.Number), Schema.Null)),
+    /** Size of the comment as ``[width, height]``. */
+    size: Schema.optional(Schema.Union(Schema.Array(Schema.Number), Schema.Null)),
+    /** Display color of the comment (e.g. ``"none"``, ``"blue"``). */
+    color: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Optional label for referencing this comment from frame ``contains_comments`` fields or for use as a map key when comments are represented as a mapping. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+});
+/**
+ * A freehand drawn line on the editor canvas.
+ */
+export const FreehandCommentSchema = Schema.Struct({
+    ...BaseCommentSchema.fields,
+    /** Comment type (``freehand``). */
+    type: Schema.Literal("freehand"),
+    /** Line thickness. */
+    thickness: Schema.optional(Schema.Union(Schema.Null, Schema.Number)),
+    /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
+    line: Schema.optional(Schema.Union(Schema.Array(Schema.Array(Schema.Number)), Schema.Null)),
 });
 /**
  * Base fields shared by all creator types, corresponding to schema.org
@@ -244,44 +263,39 @@ export const BaseCreatorSchema = Schema.Struct({
     faxNumber: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
 });
 /**
- * An organization that created or contributed to the workflow.
-Corresponds to a `schema.org Organization <https://schema.org/Organization>`_.
+ * A person who created or contributed to the workflow.
+Corresponds to a `schema.org Person <https://schema.org/Person>`_.
  */
-export const CreatorOrganizationSchema = Schema.Struct({
+export const CreatorPersonSchema = Schema.Struct({
     ...BaseCreatorSchema.fields,
-    /** Creator type discriminator (``Organization``). */
-    class: Schema.Literal("Organization"),
-});
-/**
- * Base fields shared by all comment types.
- */
-export const BaseCommentSchema = Schema.Struct({
-    /** Position of the comment on the editor canvas as ``[x, y]`` coordinates. */
-    position: Schema.optional(Schema.Union(Schema.Array(Schema.Number), Schema.Null)),
-    /** Size of the comment as ``[width, height]``. */
-    size: Schema.optional(Schema.Union(Schema.Array(Schema.Number), Schema.Null)),
-    /** Display color of the comment (e.g. ``"none"``, ``"blue"``). */
-    color: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** Optional label for referencing this comment from frame ``contains_comments`` fields or for use as a map key when comments are represented as a mapping. */
-    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Creator type discriminator (``Person``). */
+    class: Schema.Literal("Person"),
+    /** Given (first) name. */
+    givenName: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Family (last) name. */
+    familyName: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Honorific prefix (e.g. ``Dr``, ``Prof``). */
+    honorificPrefix: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Honorific suffix (e.g. ``M.D.``, ``PhD``). */
+    honorificSuffix: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Job title or role. */
+    jobTitle: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
 });
 /**
- * A Markdown-rendered annotation in the workflow editor.
+ * A plain text annotation in the workflow editor.
  */
-export const MarkdownCommentSchema = Schema.Struct({
+export const TextCommentSchema = Schema.Struct({
     ...BaseCommentSchema.fields,
-    /** Comment type (``markdown``). */
-    type: Schema.Literal("markdown"),
-    /** Markdown content. */
+    /** Comment type (``text``). */
+    type: Schema.Literal("text"),
+    /** The text content. */
     text: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-});
-/**
- * Definition of an invocation report for this workflow. Currently the only
-field is 'markdown'.
- */
-export const ReportSchema = Schema.Struct({
-    /** Galaxy flavored Markdown to define an invocation report. */
-    markdown: Schema.String,
+    /** Whether the text is displayed in bold. */
+    bold: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
+    /** Whether the text is displayed in italic. */
+    italic: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
+    /** Font size of the text. */
+    text_size: Schema.optional(Schema.Union(Schema.Null, Schema.Number)),
 });
 /**
  * A rectangular grouping box that visually contains steps and other comments.
@@ -298,51 +312,23 @@ export const FrameCommentSchema = Schema.Struct({
     contains_comments: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.Union(Schema.String, Schema.Number)))),
 });
 /**
- * A plain text annotation in the workflow editor.
+ * A Markdown-rendered annotation in the workflow editor.
  */
-export const TextCommentSchema = Schema.Struct({
+export const MarkdownCommentSchema = Schema.Struct({
     ...BaseCommentSchema.fields,
-    /** Comment type (``text``). */
-    type: Schema.Literal("text"),
-    /** The text content. */
+    /** Comment type (``markdown``). */
+    type: Schema.Literal("markdown"),
+    /** Markdown content. */
     text: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** Whether the text is displayed in bold. */
-    bold: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
-    /** Whether the text is displayed in italic. */
-    italic: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
-    /** Font size of the text. */
-    text_size: Schema.optional(Schema.Union(Schema.Null, Schema.Number)),
 });
 /**
- * A person who created or contributed to the workflow.
-Corresponds to a `schema.org Person <https://schema.org/Person>`_.
+ * An organization that created or contributed to the workflow.
+Corresponds to a `schema.org Organization <https://schema.org/Organization>`_.
  */
-export const CreatorPersonSchema = Schema.Struct({
+export const CreatorOrganizationSchema = Schema.Struct({
     ...BaseCreatorSchema.fields,
-    /** Creator type discriminator (``Person``). */
-    class: Schema.Literal("Person"),
-    /** Given (first) name. */
-    givenName: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** Family (last) name. */
-    familyName: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** Honorific prefix (e.g. ``Dr``, ``Prof``). */
-    honorificPrefix: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** Honorific suffix (e.g. ``M.D.``, ``PhD``). */
-    honorificSuffix: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** Job title or role. */
-    jobTitle: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-});
-/**
- * A freehand drawn line on the editor canvas.
- */
-export const FreehandCommentSchema = Schema.Struct({
-    ...BaseCommentSchema.fields,
-    /** Comment type (``freehand``). */
-    type: Schema.Literal("freehand"),
-    /** Line thickness. */
-    thickness: Schema.optional(Schema.Union(Schema.Null, Schema.Number)),
-    /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
-    line: Schema.optional(Schema.Union(Schema.Array(Schema.Array(Schema.Number)), Schema.Null)),
+    /** Creator type discriminator (``Organization``). */
+    class: Schema.Literal("Organization"),
 });
 /**
  * A Galaxy workflow description. This record corresponds to the description of a workflow that should be executable
@@ -413,6 +399,20 @@ export const WorkflowStepOutputSchema = Schema.Struct({
     rename: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
     set_columns: Schema.optional(Schema.Union(Schema.Record({ key: Schema.String, value: Schema.Unknown }), Schema.Null)),
 });
+export const SinkSchema = Schema.Struct({
+    /** Specifies one or more workflow parameters that will provide input to the underlying step parameter. */
+    source: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+});
+/**
+ * TODO:
+ */
+export const WorkflowStepInputSchema = Schema.Struct({
+    ...IdentifiedSchema.fields,
+    ...SinkSchema.fields,
+    ...LabeledSchema.fields,
+    /** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`.  The default must be applied prior to scattering or evaluating `va... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+});
 /**
  * This represents a non-input step a Galaxy Workflow.
 
@@ -455,9 +455,7 @@ export const WorkflowStepSchema = Schema.Struct({
     /** Workflow step module's type (defaults to 'tool'). */
     type: Schema.optional(Schema.Union(Schema.Null, WorkflowStepTypeSchema)),
     /** Specifies a subworkflow to run. May be an inline workflow definition, a URL string, or an @import reference dict. */
-    run: Schema.optional(Schema.Union(Schema.suspend(() => GalaxyWorkflowSchema).annotations({
-        identifier: "GalaxyWorkflowSchema",
-    }), Schema.String, Schema.Record({ key: Schema.String, value: Schema.Unknown }), Schema.Null)),
+    run: Schema.optional(Schema.Union(GalaxyWorkflowSchema, Schema.String, Schema.Record({ key: Schema.String, value: Schema.Unknown }), Schema.Null)),
     runtime_inputs: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.String))),
     /** If defined, only run the step when the expression evaluates to `true`.  If `false` the step is skipped.  A skipped step produces a `null` on each output.  Expression should be an ecma5.1 expression. */
     when: Schema.optional(Schema.Union(Schema.Null, Schema.String)),

package/dist/workflow/raw/gxformat2.effect.js.map

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package/dist/workflow/raw/native.d.ts

@@ -396,9 +396,9 @@ export interface NativeGalaxyWorkflow extends HasUUID {
     name?: null | string;
     class: "NativeGalaxyWorkflow";
     /** Format marker. Always the string ``"true"``. */
-    a_galaxy_workflow: string;
+    a_galaxy_workflow: "true";
     /** Format version. Always ``"0.1"`` currently. In the JSON document this field is written as ``format-version``. */
-    "format-version": string;
+    "format-version": "0.1";
     /** Human-readable workflow description. */
     annotation?: null | string;
     /** Classification tags for the workflow. */

package/dist/workflow/raw/native.d.ts.map

@@ -1 +1 @@
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package/dist/workflow/raw/native.effect.d.ts

@@ -534,9 +534,9 @@ export declare const NativeGalaxyWorkflowSchema: Schema.Struct<{
     name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
     class: Schema.Literal<["NativeGalaxyWorkflow"]>;
     /** Format marker. Always the string ``"true"``. */
-    a_galaxy_workflow: typeof Schema.String;
+    a_galaxy_workflow: Schema.Literal<["true"]>;
     /** Format version. Always ``"0.1"`` currently. In the JSON document this field is written as ``format-version``. */
-    "format-version": typeof Schema.String;
+    "format-version": Schema.Literal<["0.1"]>;
     /** Human-readable workflow description. */
     annotation: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
     /** Classification tags for the workflow. */
@@ -764,7 +764,154 @@ export declare const NativeStepSchema: Schema.Struct<{
         action_arguments: Schema.optional<Schema.Union<[Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
     }>>, typeof Schema.Null]>>;
     /** Embedded subworkflow definition. A complete native workflow document (with ``a_galaxy_workflow``, ``format-version``, ``steps``, etc.) nested inside this step. */
-    subworkflow: Schema.optional<Schema.Union<[Schema.suspend<any, any, never>, typeof Schema.Null]>>;
+    subworkflow: Schema.optional<Schema.Union<[Schema.Struct<{
+        /** Workflow display name. */
+        name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        class: Schema.Literal<["NativeGalaxyWorkflow"]>;
+        /** Format marker. Always the string ``"true"``. */
+        a_galaxy_workflow: Schema.Literal<["true"]>;
+        /** Format version. Always ``"0.1"`` currently. In the JSON document this field is written as ``format-version``. */
+        "format-version": Schema.Literal<["0.1"]>;
+        /** Human-readable workflow description. */
+        annotation: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        /** Classification tags for the workflow. */
+        tags: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
+        /** Internal revision counter. */
+        version: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
+        /** SPDX license identifier (e.g. ``"MIT"``, ``"CC-BY-4.0"``). */
+        license: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        /** Semantic version for published workflows. */
+        release: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        /** Creator(s) of this workflow. An array of schema.org NativeCreatorPerson or NativeCreatorOrganization objects, dispatched via the ``class`` field (``Person`` or ``Organization``). */
+        creator: Schema.optional<Schema.Union<[Schema.Array$<Schema.Union<[Schema.Struct<{
+            /** Creator type discriminator (``Person``). */
+            class: Schema.Literal<["Person"]>;
+            /** Given (first) name. */
+            givenName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            /** Family (last) name. */
+            familyName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            /** Honorific prefix (e.g. ``Dr``, ``Prof``). */
+            honorificPrefix: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            /** Honorific suffix (e.g. ``M.D.``, ``PhD``). */
+            honorificSuffix: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            /** Job title or role. */
+            jobTitle: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            identifier: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            email: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            image: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            address: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            alternateName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            telephone: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        }>, Schema.Struct<{
+            /** Creator type discriminator (``Organization``). */
+            class: Schema.Literal<["Organization"]>;
+            name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            identifier: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            email: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            image: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            address: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            alternateName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            telephone: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        }>]>>, typeof Schema.Null]>>;
+        /** Workflow invocation report template. */
+        report: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
+            /** Galaxy-flavored Markdown content for the invocation report. Supports template directives like ``history_dataset_as_image(output="...")``. */
+            markdown: typeof Schema.String;
+        }>]>>;
+        /** Detailed workflow description in Markdown. */
+        readme: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        /** Help text in Markdown. */
+        help: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        /** URL to workflow logo image. */
+        logo_url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        /** Associated DOIs. */
+        doi: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
+        /** Provenance tracking metadata for workflows imported from TRS or URLs. */
+        source_metadata: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
+            /** URL from which the workflow was directly imported. */
+            url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            /** Tool identifier in the Tool Registry Service (e.g. ``"#workflow/github.com/user/repo/workflow"`` or ``"109"``). */
+            trs_tool_id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            /** Version identifier in the TRS (e.g. ``"master"``, ``"5"``). */
+            trs_version_id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            /** TRS server name (e.g. ``"dockstore"``, ``"workflowhub"``). Optional even for TRS imports. */
+            trs_server: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            /** Complete TRS API endpoint URL for this workflow version. */
+            trs_url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        }>]>>;
+        /** Visual annotations in the workflow editor. */
+        comments: Schema.optional<Schema.Union<[Schema.Array$<Schema.Union<[Schema.Struct<{
+            /** Comment type (``text``). */
+            type: Schema.Literal<["text"]>;
+            /** Text content data: ``text``, ``bold``, ``italic``, ``size``. */
+            data: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
+                /** The text content. */
+                text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+                /** Whether the text is displayed in bold. */
+                bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
+                /** Whether the text is displayed in italic. */
+                italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
+                /** Font size of the text. */
+                size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
+            }>]>>;
+            id: typeof Schema.Number;
+            position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
+            size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
+            color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        }>, Schema.Struct<{
+            /** Comment type (``markdown``). */
+            type: Schema.Literal<["markdown"]>;
+            /** Markdown content data: ``text``. */
+            data: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
+                /** Markdown content. */
+                text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            }>]>>;
+            id: typeof Schema.Number;
+            position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
+            size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
+            color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        }>, Schema.Struct<{
+            /** Comment type (``frame``). */
+            type: Schema.Literal<["frame"]>;
+            /** Frame content data: ``title``. */
+            data: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
+                /** Title displayed on the frame header. */
+                title: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+            }>]>>;
+            /** Step IDs contained within this frame. */
+            child_steps: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.Number>]>>;
+            /** Comment IDs contained within this frame. */
+            child_comments: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.Number>]>>;
+            id: typeof Schema.Number;
+            position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
+            size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
+            color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        }>, Schema.Struct<{
+            /** Comment type (``freehand``). */
+            type: Schema.Literal<["freehand"]>;
+            /** Freehand content data: ``line``, ``thickness``. */
+            data: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
+                /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
+                line: Schema.optional<Schema.Union<[Schema.Array$<Schema.Array$<typeof Schema.Number>>, typeof Schema.Null]>>;
+                /** Line thickness. */
+                thickness: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
+            }>]>>;
+            id: typeof Schema.Number;
+            position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
+            size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
+            color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+        }>]>>, typeof Schema.Null]>>;
+        /** Step dictionary keyed by string integers (``"0"``, ``"1"``, ...). Values are NativeStep objects. Steps are processed in sorted numeric order during import. */
+        steps: Schema.optional<Schema.Union<[Schema.Record$<typeof Schema.String, Schema.suspend<any, any, never>>, typeof Schema.Null]>>;
+        /** Map of locally-defined subworkflow dicts, used during format conversion. */
+        subworkflows: Schema.optional<Schema.Union<[Schema.Record$<typeof Schema.String, Schema.suspend<any, any, never>>, typeof Schema.Null]>>;
+        uuid: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
+    }>, typeof Schema.Null]>>;
     /** Embedded tool definition for user-defined (dynamic) tools. Present when the step uses a ``GalaxyUserTool`` instead of a registered tool. Contains the full tool definition including ``class: GalaxyU... */
     tool_representation: Schema.optional<Schema.Union<[Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
     /** Default values for step inputs. Keys are parameter names, values are objects with a ``default`` key. */