@galaxy-tool-util/schema 0.1.0

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Files changed (226) hide show
  1. package/README.md +13 -0
  2. package/dist/index.d.ts +69 -0
  3. package/dist/index.d.ts.map +1 -0
  4. package/dist/index.js +69 -0
  5. package/dist/index.js.map +1 -0
  6. package/dist/schema/bundle-types.d.ts +249 -0
  7. package/dist/schema/bundle-types.d.ts.map +1 -0
  8. package/dist/schema/bundle-types.js +74 -0
  9. package/dist/schema/bundle-types.js.map +1 -0
  10. package/dist/schema/index.d.ts +6 -0
  11. package/dist/schema/index.d.ts.map +1 -0
  12. package/dist/schema/index.js +6 -0
  13. package/dist/schema/index.js.map +1 -0
  14. package/dist/schema/model-factory.d.ts +14 -0
  15. package/dist/schema/model-factory.d.ts.map +1 -0
  16. package/dist/schema/model-factory.js +96 -0
  17. package/dist/schema/model-factory.js.map +1 -0
  18. package/dist/schema/parameters/base.d.ts +62 -0
  19. package/dist/schema/parameters/base.d.ts.map +1 -0
  20. package/dist/schema/parameters/base.js +51 -0
  21. package/dist/schema/parameters/base.js.map +1 -0
  22. package/dist/schema/parameters/gx-baseurl.d.ts +2 -0
  23. package/dist/schema/parameters/gx-baseurl.d.ts.map +1 -0
  24. package/dist/schema/parameters/gx-baseurl.js +16 -0
  25. package/dist/schema/parameters/gx-baseurl.js.map +1 -0
  26. package/dist/schema/parameters/gx-boolean.d.ts +2 -0
  27. package/dist/schema/parameters/gx-boolean.d.ts.map +1 -0
  28. package/dist/schema/parameters/gx-boolean.js +29 -0
  29. package/dist/schema/parameters/gx-boolean.js.map +1 -0
  30. package/dist/schema/parameters/gx-color.d.ts +2 -0
  31. package/dist/schema/parameters/gx-color.d.ts.map +1 -0
  32. package/dist/schema/parameters/gx-color.js +26 -0
  33. package/dist/schema/parameters/gx-color.js.map +1 -0
  34. package/dist/schema/parameters/gx-conditional.d.ts +2 -0
  35. package/dist/schema/parameters/gx-conditional.d.ts.map +1 -0
  36. package/dist/schema/parameters/gx-conditional.js +56 -0
  37. package/dist/schema/parameters/gx-conditional.js.map +1 -0
  38. package/dist/schema/parameters/gx-data-collection.d.ts +2 -0
  39. package/dist/schema/parameters/gx-data-collection.d.ts.map +1 -0
  40. package/dist/schema/parameters/gx-data-collection.js +146 -0
  41. package/dist/schema/parameters/gx-data-collection.js.map +1 -0
  42. package/dist/schema/parameters/gx-data-column.d.ts +2 -0
  43. package/dist/schema/parameters/gx-data-column.d.ts.map +1 -0
  44. package/dist/schema/parameters/gx-data-column.js +49 -0
  45. package/dist/schema/parameters/gx-data-column.js.map +1 -0
  46. package/dist/schema/parameters/gx-data.d.ts +2 -0
  47. package/dist/schema/parameters/gx-data.d.ts.map +1 -0
  48. package/dist/schema/parameters/gx-data.js +107 -0
  49. package/dist/schema/parameters/gx-data.js.map +1 -0
  50. package/dist/schema/parameters/gx-directory-uri.d.ts +2 -0
  51. package/dist/schema/parameters/gx-directory-uri.d.ts.map +1 -0
  52. package/dist/schema/parameters/gx-directory-uri.js +19 -0
  53. package/dist/schema/parameters/gx-directory-uri.js.map +1 -0
  54. package/dist/schema/parameters/gx-drill-down.d.ts +2 -0
  55. package/dist/schema/parameters/gx-drill-down.d.ts.map +1 -0
  56. package/dist/schema/parameters/gx-drill-down.js +40 -0
  57. package/dist/schema/parameters/gx-drill-down.js.map +1 -0
  58. package/dist/schema/parameters/gx-float.d.ts +2 -0
  59. package/dist/schema/parameters/gx-float.d.ts.map +1 -0
  60. package/dist/schema/parameters/gx-float.js +46 -0
  61. package/dist/schema/parameters/gx-float.js.map +1 -0
  62. package/dist/schema/parameters/gx-genomebuild.d.ts +2 -0
  63. package/dist/schema/parameters/gx-genomebuild.d.ts.map +1 -0
  64. package/dist/schema/parameters/gx-genomebuild.js +23 -0
  65. package/dist/schema/parameters/gx-genomebuild.js.map +1 -0
  66. package/dist/schema/parameters/gx-group-tag.d.ts +2 -0
  67. package/dist/schema/parameters/gx-group-tag.d.ts.map +1 -0
  68. package/dist/schema/parameters/gx-group-tag.js +23 -0
  69. package/dist/schema/parameters/gx-group-tag.js.map +1 -0
  70. package/dist/schema/parameters/gx-hidden.d.ts +2 -0
  71. package/dist/schema/parameters/gx-hidden.d.ts.map +1 -0
  72. package/dist/schema/parameters/gx-hidden.js +33 -0
  73. package/dist/schema/parameters/gx-hidden.js.map +1 -0
  74. package/dist/schema/parameters/gx-integer.d.ts +2 -0
  75. package/dist/schema/parameters/gx-integer.d.ts.map +1 -0
  76. package/dist/schema/parameters/gx-integer.js +47 -0
  77. package/dist/schema/parameters/gx-integer.js.map +1 -0
  78. package/dist/schema/parameters/gx-repeat.d.ts +2 -0
  79. package/dist/schema/parameters/gx-repeat.d.ts.map +1 -0
  80. package/dist/schema/parameters/gx-repeat.js +30 -0
  81. package/dist/schema/parameters/gx-repeat.js.map +1 -0
  82. package/dist/schema/parameters/gx-rules.d.ts +2 -0
  83. package/dist/schema/parameters/gx-rules.d.ts.map +1 -0
  84. package/dist/schema/parameters/gx-rules.js +91 -0
  85. package/dist/schema/parameters/gx-rules.js.map +1 -0
  86. package/dist/schema/parameters/gx-section.d.ts +2 -0
  87. package/dist/schema/parameters/gx-section.d.ts.map +1 -0
  88. package/dist/schema/parameters/gx-section.js +17 -0
  89. package/dist/schema/parameters/gx-section.js.map +1 -0
  90. package/dist/schema/parameters/gx-select.d.ts +2 -0
  91. package/dist/schema/parameters/gx-select.d.ts.map +1 -0
  92. package/dist/schema/parameters/gx-select.js +63 -0
  93. package/dist/schema/parameters/gx-select.js.map +1 -0
  94. package/dist/schema/parameters/gx-text.d.ts +2 -0
  95. package/dist/schema/parameters/gx-text.d.ts.map +1 -0
  96. package/dist/schema/parameters/gx-text.js +22 -0
  97. package/dist/schema/parameters/gx-text.js.map +1 -0
  98. package/dist/schema/parameters/index.d.ts +21 -0
  99. package/dist/schema/parameters/index.d.ts.map +1 -0
  100. package/dist/schema/parameters/index.js +24 -0
  101. package/dist/schema/parameters/index.js.map +1 -0
  102. package/dist/schema/parameters/registry.d.ts +6 -0
  103. package/dist/schema/parameters/registry.d.ts.map +1 -0
  104. package/dist/schema/parameters/registry.js +18 -0
  105. package/dist/schema/parameters/registry.js.map +1 -0
  106. package/dist/schema/state-representations.d.ts +14 -0
  107. package/dist/schema/state-representations.d.ts.map +1 -0
  108. package/dist/schema/state-representations.js +61 -0
  109. package/dist/schema/state-representations.js.map +1 -0
  110. package/dist/schema/validators/empty-field.d.ts +2 -0
  111. package/dist/schema/validators/empty-field.d.ts.map +1 -0
  112. package/dist/schema/validators/empty-field.js +12 -0
  113. package/dist/schema/validators/empty-field.js.map +1 -0
  114. package/dist/schema/validators/expression.d.ts +2 -0
  115. package/dist/schema/validators/expression.d.ts.map +1 -0
  116. package/dist/schema/validators/expression.js +42 -0
  117. package/dist/schema/validators/expression.js.map +1 -0
  118. package/dist/schema/validators/in-range.d.ts +2 -0
  119. package/dist/schema/validators/in-range.d.ts.map +1 -0
  120. package/dist/schema/validators/in-range.js +36 -0
  121. package/dist/schema/validators/in-range.js.map +1 -0
  122. package/dist/schema/validators/index.d.ts +8 -0
  123. package/dist/schema/validators/index.d.ts.map +1 -0
  124. package/dist/schema/validators/index.js +10 -0
  125. package/dist/schema/validators/index.js.map +1 -0
  126. package/dist/schema/validators/length.d.ts +2 -0
  127. package/dist/schema/validators/length.d.ts.map +1 -0
  128. package/dist/schema/validators/length.js +29 -0
  129. package/dist/schema/validators/length.js.map +1 -0
  130. package/dist/schema/validators/no-options.d.ts +2 -0
  131. package/dist/schema/validators/no-options.d.ts.map +1 -0
  132. package/dist/schema/validators/no-options.js +10 -0
  133. package/dist/schema/validators/no-options.js.map +1 -0
  134. package/dist/schema/validators/regex.d.ts +27 -0
  135. package/dist/schema/validators/regex.d.ts.map +1 -0
  136. package/dist/schema/validators/regex.js +100 -0
  137. package/dist/schema/validators/regex.js.map +1 -0
  138. package/dist/schema/validators/registry.d.ts +19 -0
  139. package/dist/schema/validators/registry.d.ts.map +1 -0
  140. package/dist/schema/validators/registry.js +29 -0
  141. package/dist/schema/validators/registry.js.map +1 -0
  142. package/dist/workflow/clean.d.ts +13 -0
  143. package/dist/workflow/clean.d.ts.map +1 -0
  144. package/dist/workflow/clean.js +131 -0
  145. package/dist/workflow/clean.js.map +1 -0
  146. package/dist/workflow/detect-format.d.ts +5 -0
  147. package/dist/workflow/detect-format.d.ts.map +1 -0
  148. package/dist/workflow/detect-format.js +11 -0
  149. package/dist/workflow/detect-format.js.map +1 -0
  150. package/dist/workflow/index.d.ts +9 -0
  151. package/dist/workflow/index.d.ts.map +1 -0
  152. package/dist/workflow/index.js +11 -0
  153. package/dist/workflow/index.js.map +1 -0
  154. package/dist/workflow/legacy-encoding.d.ts +40 -0
  155. package/dist/workflow/legacy-encoding.d.ts.map +1 -0
  156. package/dist/workflow/legacy-encoding.js +81 -0
  157. package/dist/workflow/legacy-encoding.js.map +1 -0
  158. package/dist/workflow/lint.d.ts +49 -0
  159. package/dist/workflow/lint.d.ts.map +1 -0
  160. package/dist/workflow/lint.js +402 -0
  161. package/dist/workflow/lint.js.map +1 -0
  162. package/dist/workflow/normalized/comments.d.ts +21 -0
  163. package/dist/workflow/normalized/comments.d.ts.map +1 -0
  164. package/dist/workflow/normalized/comments.js +80 -0
  165. package/dist/workflow/normalized/comments.js.map +1 -0
  166. package/dist/workflow/normalized/ensure.d.ts +21 -0
  167. package/dist/workflow/normalized/ensure.d.ts.map +1 -0
  168. package/dist/workflow/normalized/ensure.js +43 -0
  169. package/dist/workflow/normalized/ensure.js.map +1 -0
  170. package/dist/workflow/normalized/expanded.d.ts +62 -0
  171. package/dist/workflow/normalized/expanded.d.ts.map +1 -0
  172. package/dist/workflow/normalized/expanded.js +173 -0
  173. package/dist/workflow/normalized/expanded.js.map +1 -0
  174. package/dist/workflow/normalized/format2.d.ts +149 -0
  175. package/dist/workflow/normalized/format2.d.ts.map +1 -0
  176. package/dist/workflow/normalized/format2.js +416 -0
  177. package/dist/workflow/normalized/format2.js.map +1 -0
  178. package/dist/workflow/normalized/index.d.ts +9 -0
  179. package/dist/workflow/normalized/index.d.ts.map +1 -0
  180. package/dist/workflow/normalized/index.js +9 -0
  181. package/dist/workflow/normalized/index.js.map +1 -0
  182. package/dist/workflow/normalized/labels.d.ts +27 -0
  183. package/dist/workflow/normalized/labels.d.ts.map +1 -0
  184. package/dist/workflow/normalized/labels.js +59 -0
  185. package/dist/workflow/normalized/labels.js.map +1 -0
  186. package/dist/workflow/normalized/native.d.ts +97 -0
  187. package/dist/workflow/normalized/native.d.ts.map +1 -0
  188. package/dist/workflow/normalized/native.js +189 -0
  189. package/dist/workflow/normalized/native.js.map +1 -0
  190. package/dist/workflow/normalized/toFormat2.d.ts +11 -0
  191. package/dist/workflow/normalized/toFormat2.d.ts.map +1 -0
  192. package/dist/workflow/normalized/toFormat2.js +416 -0
  193. package/dist/workflow/normalized/toFormat2.js.map +1 -0
  194. package/dist/workflow/normalized/toNative.d.ts +11 -0
  195. package/dist/workflow/normalized/toNative.d.ts.map +1 -0
  196. package/dist/workflow/normalized/toNative.js +576 -0
  197. package/dist/workflow/normalized/toNative.js.map +1 -0
  198. package/dist/workflow/raw/gxformat2.d.ts +402 -0
  199. package/dist/workflow/raw/gxformat2.d.ts.map +1 -0
  200. package/dist/workflow/raw/gxformat2.effect.d.ts +1140 -0
  201. package/dist/workflow/raw/gxformat2.effect.d.ts.map +1 -0
  202. package/dist/workflow/raw/gxformat2.effect.js +453 -0
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  204. package/dist/workflow/raw/gxformat2.js +3 -0
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  206. package/dist/workflow/raw/index.d.ts +5 -0
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  208. package/dist/workflow/raw/index.js +4 -0
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  210. package/dist/workflow/raw/native.d.ts +439 -0
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  212. package/dist/workflow/raw/native.effect.d.ts +947 -0
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  214. package/dist/workflow/raw/native.effect.js +474 -0
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  216. package/dist/workflow/raw/native.js +20 -0
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  218. package/dist/workflow/replacement-scan.d.ts +21 -0
  219. package/dist/workflow/replacement-scan.d.ts.map +1 -0
  220. package/dist/workflow/replacement-scan.js +92 -0
  221. package/dist/workflow/replacement-scan.js.map +1 -0
  222. package/dist/workflow/state-merge.d.ts +49 -0
  223. package/dist/workflow/state-merge.d.ts.map +1 -0
  224. package/dist/workflow/state-merge.js +248 -0
  225. package/dist/workflow/state-merge.js.map +1 -0
  226. package/package.json +45 -0
@@ -0,0 +1,1140 @@
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+ import { Schema } from "effect";
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+ /**
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+ * Salad data types are based on Avro schema declarations. Refer to the
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+ [Avro schema declaration documentation](https://avro.apache.org/docs/current/spec.html#schemas) for
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+ detailed information.
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+
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+ null: no value
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+ boolean: a binary value
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+ int: 32-bit signed integer
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+ long: 64-bit signed integer
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+ float: single precision (32-bit) IEEE 754 floating-point number
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+ double: double precision (64-bit) IEEE 754 floating-point number
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+ string: Unicode character sequence
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+ */
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+ export declare const PrimitiveTypeSchema: Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string"]>;
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+ export type PrimitiveType = typeof PrimitiveTypeSchema.Type;
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+ /**
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+ * Extends primitive types with the native Galaxy concepts such datasets and collections.
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+ integer: an alias for int type - matches syntax used by Galaxy tools
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+ text: an alias for string type - matches syntax used by Galaxy tools
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+ File: an alias for data - there are subtle differences between a plain file, the CWL concept of 'File', and the Galaxy concept of a dataset - this may have subtly difference semantics in the future
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+ data: a Galaxy dataset
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+ collection: a Galaxy dataset collection
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+ */
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+ export declare const GalaxyTypeSchema: Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>;
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+ export type GalaxyType = typeof GalaxyTypeSchema.Type;
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+ /**
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+ * Module types used by Galaxy steps. Galaxy's native format allows additional types such as data_input, data_input_collection, and parameter_type
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+ but these should be represented as ``inputs`` in Format2.
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+
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+ tool: Run a tool.
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+ subworkflow: Run a subworkflow.
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+ pause: Pause computation on this branch of workflow until user allows it to continue.
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+ pick_value: Select the first non-null value from multiple inputs. Used to merge branches of conditional or optional workflow paths.
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+ */
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+ export declare const WorkflowStepTypeSchema: Schema.Literal<["tool", "subworkflow", "pause", "pick_value"]>;
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+ export type WorkflowStepType = typeof WorkflowStepTypeSchema.Type;
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+ export declare const DocumentedSchema: Schema.Struct<{
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+ /** A documentation string for this object, or an array of strings which should be concatenated. */
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+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
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+ }>;
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+ export type Documented = typeof DocumentedSchema.Type;
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+ /**
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+ * Define an enumerated type.
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+ */
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+ export declare const EnumSchemaSchema: Schema.Struct<{
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+ /** Defines the set of valid symbols. */
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+ symbols: Schema.Array$<typeof Schema.String>;
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+ /** Must be `enum` */
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+ type: Schema.Literal<["enum"]>;
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+ }>;
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+ export type EnumSchema = typeof EnumSchemaSchema.Type;
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+ export declare const RecordSchemaSchema: Schema.Struct<{
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+ /** Defines the fields of the record. */
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+ fields: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.suspend<any, any, never>>]>>;
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+ /** Must be `record` */
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+ type: Schema.Literal<["record"]>;
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+ }>;
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+ export type RecordSchema = typeof RecordSchemaSchema.Type;
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+ export declare const ArraySchemaSchema: Schema.Struct<{
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+ /** Defines the type of the array elements. */
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+ items: Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string"]>, Schema.Struct<{
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+ /** Defines the fields of the record. */
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+ fields: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.suspend<any, any, never>>]>>;
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+ /** Must be `record` */
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+ type: Schema.Literal<["record"]>;
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+ }>, Schema.Struct<{
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+ /** Defines the set of valid symbols. */
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+ symbols: Schema.Array$<typeof Schema.String>;
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+ /** Must be `enum` */
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+ type: Schema.Literal<["enum"]>;
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+ }>, Schema.suspend<any, any, never>, typeof Schema.String, Schema.Array$<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string"]>, Schema.Struct<{
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+ /** Defines the fields of the record. */
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+ fields: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.suspend<any, any, never>>]>>;
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+ /** Must be `record` */
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+ type: Schema.Literal<["record"]>;
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+ }>, Schema.Struct<{
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+ /** Defines the set of valid symbols. */
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+ symbols: Schema.Array$<typeof Schema.String>;
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+ /** Must be `enum` */
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+ type: Schema.Literal<["enum"]>;
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+ }>, Schema.suspend<any, any, never>, typeof Schema.String]>>]>;
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+ /** Must be `array` */
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+ type: Schema.Literal<["array"]>;
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+ }>;
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+ export type ArraySchema = typeof ArraySchemaSchema.Type;
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+ /**
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+ * A field of a record.
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+ */
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+ export declare const RecordFieldSchema: Schema.Struct<{
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+ /** The name of the field */
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+ name: typeof Schema.String;
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+ /** The field type */
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+ type: Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string"]>, Schema.Struct<{
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+ /** Defines the fields of the record. */
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+ fields: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.suspend<any, any, never>>]>>;
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+ /** Must be `record` */
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+ type: Schema.Literal<["record"]>;
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+ }>, Schema.Struct<{
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+ /** Defines the set of valid symbols. */
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+ symbols: Schema.Array$<typeof Schema.String>;
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+ /** Must be `enum` */
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+ type: Schema.Literal<["enum"]>;
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+ }>, Schema.Struct<{
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+ /** Defines the type of the array elements. */
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+ items: Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string"]>, Schema.Struct<{
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+ /** Defines the fields of the record. */
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+ fields: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.suspend<any, any, never>>]>>;
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+ /** Must be `record` */
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+ type: Schema.Literal<["record"]>;
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+ }>, Schema.Struct<{
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+ /** Defines the set of valid symbols. */
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+ symbols: Schema.Array$<typeof Schema.String>;
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+ /** Must be `enum` */
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+ type: Schema.Literal<["enum"]>;
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+ }>, Schema.suspend<any, any, never>, typeof Schema.String, Schema.Array$<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string"]>, Schema.Struct<{
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+ /** Defines the fields of the record. */
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+ fields: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.suspend<any, any, never>>]>>;
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+ /** Must be `record` */
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+ type: Schema.Literal<["record"]>;
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+ }>, Schema.Struct<{
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+ /** Defines the set of valid symbols. */
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+ symbols: Schema.Array$<typeof Schema.String>;
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+ /** Must be `enum` */
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+ type: Schema.Literal<["enum"]>;
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+ }>, Schema.suspend<any, any, never>, typeof Schema.String]>>]>;
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+ /** Must be `array` */
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+ type: Schema.Literal<["array"]>;
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+ }>, typeof Schema.String, Schema.Array$<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string"]>, Schema.Struct<{
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+ /** Defines the fields of the record. */
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+ fields: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.suspend<any, any, never>>]>>;
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+ /** Must be `record` */
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+ type: Schema.Literal<["record"]>;
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+ }>, Schema.Struct<{
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+ /** Defines the set of valid symbols. */
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+ symbols: Schema.Array$<typeof Schema.String>;
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+ /** Must be `enum` */
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+ type: Schema.Literal<["enum"]>;
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+ }>, Schema.Struct<{
140
+ /** Defines the type of the array elements. */
141
+ items: Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string"]>, Schema.Struct<{
142
+ /** Defines the fields of the record. */
143
+ fields: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.suspend<any, any, never>>]>>;
144
+ /** Must be `record` */
145
+ type: Schema.Literal<["record"]>;
146
+ }>, Schema.Struct<{
147
+ /** Defines the set of valid symbols. */
148
+ symbols: Schema.Array$<typeof Schema.String>;
149
+ /** Must be `enum` */
150
+ type: Schema.Literal<["enum"]>;
151
+ }>, Schema.suspend<any, any, never>, typeof Schema.String, Schema.Array$<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string"]>, Schema.Struct<{
152
+ /** Defines the fields of the record. */
153
+ fields: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.suspend<any, any, never>>]>>;
154
+ /** Must be `record` */
155
+ type: Schema.Literal<["record"]>;
156
+ }>, Schema.Struct<{
157
+ /** Defines the set of valid symbols. */
158
+ symbols: Schema.Array$<typeof Schema.String>;
159
+ /** Must be `enum` */
160
+ type: Schema.Literal<["enum"]>;
161
+ }>, Schema.suspend<any, any, never>, typeof Schema.String]>>]>;
162
+ /** Must be `array` */
163
+ type: Schema.Literal<["array"]>;
164
+ }>, typeof Schema.String]>>]>;
165
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
166
+ }>;
167
+ export type RecordField = typeof RecordFieldSchema.Type;
168
+ export declare const LabeledSchema: Schema.Struct<{
169
+ /** A short, human-readable label of this object. */
170
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
171
+ }>;
172
+ export type Labeled = typeof LabeledSchema.Type;
173
+ export declare const IdentifiedSchema: Schema.Struct<{
174
+ /** The unique identifier for this object. */
175
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
176
+ }>;
177
+ export type Identified = typeof IdentifiedSchema.Type;
178
+ /**
179
+ * Define an input or output parameter to a process.
180
+ */
181
+ export declare const ParameterSchema: Schema.Struct<{
182
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
183
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
184
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
185
+ }>;
186
+ export type Parameter = typeof ParameterSchema.Type;
187
+ export declare const InputParameterSchema: Schema.Struct<{
188
+ /** The unique identifier for this object. */
189
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
190
+ /** A short, human-readable label of this object. */
191
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
192
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
193
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
194
+ /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`. Default values are applied before eva... */
195
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
196
+ }>;
197
+ export type InputParameter = typeof InputParameterSchema.Type;
198
+ export declare const OutputParameterSchema: Schema.Struct<{
199
+ /** The unique identifier for this object. */
200
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
201
+ /** A short, human-readable label of this object. */
202
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
203
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
204
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
205
+ }>;
206
+ export type OutputParameter = typeof OutputParameterSchema.Type;
207
+ /**
208
+ * Describe an output parameter of a workflow. The parameter must be
209
+ connected to one parameter defined in the workflow that
210
+ will provide the value of the output parameter. It is legal to
211
+ connect a WorkflowInputParameter to a WorkflowOutputParameter.
212
+ */
213
+ export declare const WorkflowOutputParameterSchema: Schema.Struct<{
214
+ /** The unique identifier for this object. */
215
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
216
+ /** A short, human-readable label of this object. */
217
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
218
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
219
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
220
+ /** Specifies workflow parameter that supply the value of to the output parameter. */
221
+ outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
222
+ /** Specify valid types of data that may be assigned to this parameter. */
223
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
224
+ }>;
225
+ export type WorkflowOutputParameter = typeof WorkflowOutputParameterSchema.Type;
226
+ /**
227
+ * This field specifies the location of the step's node when rendered in the workflow editor.
228
+ */
229
+ export declare const StepPositionSchema: Schema.Struct<{
230
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
231
+ top: typeof Schema.Number;
232
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
233
+ left: typeof Schema.Number;
234
+ }>;
235
+ export type StepPosition = typeof StepPositionSchema.Type;
236
+ export declare const HasStepPositionSchema: Schema.Struct<{
237
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
238
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
239
+ top: typeof Schema.Number;
240
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
241
+ left: typeof Schema.Number;
242
+ }>]>>;
243
+ }>;
244
+ export type HasStepPosition = typeof HasStepPositionSchema.Type;
245
+ export declare const WorkflowInputParameterSchema: Schema.Struct<{
246
+ /** The unique identifier for this object. */
247
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
248
+ /** A short, human-readable label of this object. */
249
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
250
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
251
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
252
+ /** Specify valid types of data that may be assigned to this parameter. */
253
+ type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>>]>>;
254
+ /** If set to true, `WorkflowInputParameter` is not required to submit the workflow. */
255
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
256
+ /** Specify datatype extension for valid input datasets. */
257
+ format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
258
+ /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
259
+ collection_type: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
260
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
261
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
262
+ top: typeof Schema.Number;
263
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
264
+ left: typeof Schema.Number;
265
+ }>]>>;
266
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
267
+ }>;
268
+ export type WorkflowInputParameter = typeof WorkflowInputParameterSchema.Type;
269
+ /**
270
+ * The base executable type in CWL is the `Process` object defined by the
271
+ document. Note that the `Process` object is abstract and cannot be
272
+ directly executed.
273
+ */
274
+ export declare const ProcessSchema: Schema.Struct<{
275
+ /** Defines the input parameters of the process. The process is ready to run when all required input parameters are associated with concrete values. Input parameters include a schema for each paramet... */
276
+ inputs: Schema.Union<[Schema.Array$<Schema.Struct<{
277
+ /** The unique identifier for this object. */
278
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
279
+ /** A short, human-readable label of this object. */
280
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
281
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
282
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
283
+ /** Specify valid types of data that may be assigned to this parameter. */
284
+ type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>>]>>;
285
+ /** If set to true, `WorkflowInputParameter` is not required to submit the workflow. */
286
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
287
+ /** Specify datatype extension for valid input datasets. */
288
+ format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
289
+ /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
290
+ collection_type: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
291
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
292
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
293
+ top: typeof Schema.Number;
294
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
295
+ left: typeof Schema.Number;
296
+ }>]>>;
297
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
298
+ }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
299
+ /** The unique identifier for this object. */
300
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
301
+ /** A short, human-readable label of this object. */
302
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
303
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
304
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
305
+ /** Specify valid types of data that may be assigned to this parameter. */
306
+ type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>>]>>;
307
+ /** If set to true, `WorkflowInputParameter` is not required to submit the workflow. */
308
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
309
+ /** Specify datatype extension for valid input datasets. */
310
+ format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
311
+ /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
312
+ collection_type: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
313
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
314
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
315
+ top: typeof Schema.Number;
316
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
317
+ left: typeof Schema.Number;
318
+ }>]>>;
319
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
320
+ }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
321
+ /** Defines the parameters representing the output of the process. May be used to generate and/or validate the output object. */
322
+ outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
323
+ /** The unique identifier for this object. */
324
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
325
+ /** A short, human-readable label of this object. */
326
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
327
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
328
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
329
+ /** Specifies workflow parameter that supply the value of to the output parameter. */
330
+ outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
331
+ /** Specify valid types of data that may be assigned to this parameter. */
332
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
333
+ }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
334
+ /** The unique identifier for this object. */
335
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
336
+ /** A short, human-readable label of this object. */
337
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
338
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
339
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
340
+ /** Specifies workflow parameter that supply the value of to the output parameter. */
341
+ outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
342
+ /** Specify valid types of data that may be assigned to this parameter. */
343
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
344
+ }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
345
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
346
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
347
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
348
+ }>;
349
+ export type Process = typeof ProcessSchema.Type;
350
+ export declare const HasUUIDSchema: Schema.Struct<{
351
+ /** UUID uniquely representing this element. */
352
+ uuid: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
353
+ }>;
354
+ export type HasUUID = typeof HasUUIDSchema.Type;
355
+ export declare const HasStepErrorsSchema: Schema.Struct<{
356
+ /** During Galaxy export there may be some problem validating the tool state, tool used, etc.. that will be indicated by this field. The Galaxy user should be warned of these problems before the workfl... */
357
+ errors: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
358
+ }>;
359
+ export type HasStepErrors = typeof HasStepErrorsSchema.Type;
360
+ export declare const ToolShedRepositorySchema: Schema.Struct<{
361
+ /** The name of the tool shed repository this tool can be found in. */
362
+ name: typeof Schema.String;
363
+ /** The revision of the tool shed repository this tool can be found in. */
364
+ changeset_revision: typeof Schema.String;
365
+ /** The owner of the tool shed repository this tool can be found in. */
366
+ owner: typeof Schema.String;
367
+ /** The URI of the tool shed containing the repository this tool can be found in - typically this should be toolshed.g2.bx.psu.edu. */
368
+ tool_shed: typeof Schema.String;
369
+ }>;
370
+ export type ToolShedRepository = typeof ToolShedRepositorySchema.Type;
371
+ export declare const ReferencesToolSchema: Schema.Struct<{
372
+ /** The tool ID used to run this step of the workflow (e.g. 'cat1' or 'toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.0'). */
373
+ tool_id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
374
+ /** The Galaxy Tool Shed repository that should be installed in order to use this tool. */
375
+ tool_shed_repository: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
376
+ /** The name of the tool shed repository this tool can be found in. */
377
+ name: typeof Schema.String;
378
+ /** The revision of the tool shed repository this tool can be found in. */
379
+ changeset_revision: typeof Schema.String;
380
+ /** The owner of the tool shed repository this tool can be found in. */
381
+ owner: typeof Schema.String;
382
+ /** The URI of the tool shed containing the repository this tool can be found in - typically this should be toolshed.g2.bx.psu.edu. */
383
+ tool_shed: typeof Schema.String;
384
+ }>]>>;
385
+ /** The tool version corresponding used to run this step of the workflow. For tool shed installed tools, the ID generally uniquely specifies a version and this field is optional. */
386
+ tool_version: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
387
+ }>;
388
+ export type ReferencesTool = typeof ReferencesToolSchema.Type;
389
+ /**
390
+ * Associate an output parameter of the underlying process with a workflow
391
+ parameter. The workflow parameter (given in the `id` field) be may be used
392
+ as a `source` to connect with input parameters of other workflow steps, or
393
+ with an output parameter of the process.
394
+
395
+ A unique identifier for this workflow output parameter. This is
396
+ the identifier to use in the `source` field of `WorkflowStepInput`
397
+ to connect the output value to downstream parameters.
398
+ */
399
+ export declare const WorkflowStepOutputSchema: Schema.Struct<{
400
+ add_tags: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
401
+ change_datatype: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
402
+ delete_intermediate_datasets: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
403
+ hide: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
404
+ remove_tags: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
405
+ rename: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
406
+ set_columns: Schema.optional<Schema.Union<[Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
407
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
408
+ }>;
409
+ export type WorkflowStepOutput = typeof WorkflowStepOutputSchema.Type;
410
+ export declare const SinkSchema: Schema.Struct<{
411
+ /** Specifies one or more workflow parameters that will provide input to the underlying step parameter. */
412
+ source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
413
+ }>;
414
+ export type Sink = typeof SinkSchema.Type;
415
+ /**
416
+ * TODO:
417
+ */
418
+ export declare const WorkflowStepInputSchema: Schema.Struct<{
419
+ /** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`. The default must be applied prior to scattering or evaluating `va... */
420
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
421
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
422
+ source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
423
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
424
+ }>;
425
+ export type WorkflowStepInput = typeof WorkflowStepInputSchema.Type;
426
+ /**
427
+ * Definition of an invocation report for this workflow. Currently the only
428
+ field is 'markdown'.
429
+ */
430
+ export declare const ReportSchema: Schema.Struct<{
431
+ /** Galaxy flavored Markdown to define an invocation report. */
432
+ markdown: typeof Schema.String;
433
+ }>;
434
+ export type Report = typeof ReportSchema.Type;
435
+ /**
436
+ * Base fields shared by all comment types.
437
+ */
438
+ export declare const BaseCommentSchema: Schema.Struct<{
439
+ /** Position of the comment on the editor canvas as ``[x, y]`` coordinates. */
440
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
441
+ /** Size of the comment as ``[width, height]``. */
442
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
443
+ /** Display color of the comment (e.g. ``"none"``, ``"blue"``). */
444
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
445
+ /** Optional label for referencing this comment from frame ``contains_comments`` fields or for use as a map key when comments are represented as a mapping. */
446
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
447
+ }>;
448
+ export type BaseComment = typeof BaseCommentSchema.Type;
449
+ /**
450
+ * A plain text annotation in the workflow editor.
451
+ */
452
+ export declare const TextCommentSchema: Schema.Struct<{
453
+ /** Comment type (``text``). */
454
+ type: Schema.Literal<["text"]>;
455
+ /** The text content. */
456
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
457
+ /** Whether the text is displayed in bold. */
458
+ bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
459
+ /** Whether the text is displayed in italic. */
460
+ italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
461
+ /** Font size of the text. */
462
+ text_size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
463
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
464
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
465
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
466
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
467
+ }>;
468
+ export type TextComment = typeof TextCommentSchema.Type;
469
+ /**
470
+ * A Markdown-rendered annotation in the workflow editor.
471
+ */
472
+ export declare const MarkdownCommentSchema: Schema.Struct<{
473
+ /** Comment type (``markdown``). */
474
+ type: Schema.Literal<["markdown"]>;
475
+ /** Markdown content. */
476
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
477
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
478
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
479
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
480
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
481
+ }>;
482
+ export type MarkdownComment = typeof MarkdownCommentSchema.Type;
483
+ /**
484
+ * A freehand drawn line on the editor canvas.
485
+ */
486
+ export declare const FreehandCommentSchema: Schema.Struct<{
487
+ /** Comment type (``freehand``). */
488
+ type: Schema.Literal<["freehand"]>;
489
+ /** Line thickness. */
490
+ thickness: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
491
+ /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
492
+ line: Schema.optional<Schema.Union<[Schema.Array$<Schema.Array$<typeof Schema.Number>>, typeof Schema.Null]>>;
493
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
494
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
495
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
496
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
497
+ }>;
498
+ export type FreehandComment = typeof FreehandCommentSchema.Type;
499
+ /**
500
+ * Base fields shared by all creator types, corresponding to schema.org
501
+ Thing properties common to both Person and Organization.
502
+ */
503
+ export declare const BaseCreatorSchema: Schema.Struct<{
504
+ /** Full name of the person or organization. */
505
+ name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
506
+ /** Persistent identifier, typically an ORCID URL (e.g. ``https://orcid.org/0000-0001-2345-6789``) or bare ORCID. */
507
+ identifier: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
508
+ /** Website or profile URL. */
509
+ url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
510
+ /** Email address. May include a ``mailto:`` prefix. */
511
+ email: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
512
+ /** URL to an image or avatar. */
513
+ image: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
514
+ /** Physical or mailing address. */
515
+ address: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
516
+ /** An alternate name or alias. */
517
+ alternateName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
518
+ /** Telephone number. */
519
+ telephone: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
520
+ /** Fax number. */
521
+ faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
522
+ }>;
523
+ export type BaseCreator = typeof BaseCreatorSchema.Type;
524
+ /**
525
+ * A person who created or contributed to the workflow.
526
+ Corresponds to a `schema.org Person <https://schema.org/Person>`_.
527
+ */
528
+ export declare const CreatorPersonSchema: Schema.Struct<{
529
+ /** Creator type discriminator (``Person``). */
530
+ class: Schema.Literal<["Person"]>;
531
+ /** Given (first) name. */
532
+ givenName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
533
+ /** Family (last) name. */
534
+ familyName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
535
+ /** Honorific prefix (e.g. ``Dr``, ``Prof``). */
536
+ honorificPrefix: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
537
+ /** Honorific suffix (e.g. ``M.D.``, ``PhD``). */
538
+ honorificSuffix: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
539
+ /** Job title or role. */
540
+ jobTitle: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
541
+ name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
542
+ identifier: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
543
+ url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
544
+ email: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
545
+ image: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
546
+ address: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
547
+ alternateName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
548
+ telephone: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
549
+ faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
550
+ }>;
551
+ export type CreatorPerson = typeof CreatorPersonSchema.Type;
552
+ /**
553
+ * A rectangular grouping box that visually contains steps and other comments.
554
+ */
555
+ export declare const FrameCommentSchema: Schema.Struct<{
556
+ /** Comment type (``frame``). */
557
+ type: Schema.Literal<["frame"]>;
558
+ /** Title displayed on the frame header. */
559
+ title: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
560
+ /** Step labels or indices contained within this frame. */
561
+ contains_steps: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
562
+ /** Comment labels or indices contained within this frame. */
563
+ contains_comments: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
564
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
565
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
566
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
567
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
568
+ }>;
569
+ export type FrameComment = typeof FrameCommentSchema.Type;
570
+ /**
571
+ * An organization that created or contributed to the workflow.
572
+ Corresponds to a `schema.org Organization <https://schema.org/Organization>`_.
573
+ */
574
+ export declare const CreatorOrganizationSchema: Schema.Struct<{
575
+ /** Creator type discriminator (``Organization``). */
576
+ class: Schema.Literal<["Organization"]>;
577
+ name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
578
+ identifier: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
579
+ url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
580
+ email: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
581
+ image: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
582
+ address: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
583
+ alternateName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
584
+ telephone: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
585
+ faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
586
+ }>;
587
+ export type CreatorOrganization = typeof CreatorOrganizationSchema.Type;
588
+ /**
589
+ * A Galaxy workflow description. This record corresponds to the description of a workflow that should be executable
590
+ on a Galaxy server that includes the contained tool definitions.
591
+
592
+ The workflows API or the user interface of Galaxy instances that are of version 19.09 or newer should be able to
593
+ import a document defining this record.
594
+
595
+ ## A note about `label` field.
596
+
597
+ This is the name of the workflow in the Galaxy user interface. This is the mechanism that
598
+ users will primarily identify the workflow using. Legacy support - this may also be called 'name' and Galaxy will
599
+ consume the workflow document fine and treat this attribute correctly - however in order to validate against this
600
+ workflow definition schema the attribute should be called `label`.
601
+ */
602
+ export declare const GalaxyWorkflowSchema: Schema.Struct<{
603
+ /** The unique identifier for this object. */
604
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
605
+ class: Schema.Literal<["GalaxyWorkflow"]>;
606
+ /** A short, human-readable label of this object. */
607
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
608
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
609
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
610
+ /** The individual steps that make up the workflow. Each step is executed when all of its input data links are fulfilled. */
611
+ steps: Schema.Union<[Schema.Array$<Schema.suspend<any, any, never>>, Schema.Record$<typeof Schema.String, Schema.suspend<any, any, never>>]>;
612
+ /** Workflow invocation report template. */
613
+ report: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
614
+ /** Galaxy flavored Markdown to define an invocation report. */
615
+ markdown: typeof Schema.String;
616
+ }>]>>;
617
+ /** Tags for the workflow. */
618
+ tags: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.String>, typeof Schema.Null]>>;
619
+ /** Visual annotations for the workflow editor canvas. Comments are non-functional and do not affect workflow execution. May be specified as a list or as a mapping keyed by label. */
620
+ comments: Schema.optional<Schema.Union<[Schema.Array$<Schema.Union<[Schema.Struct<{
621
+ /** Comment type (``text``). */
622
+ type: Schema.Literal<["text"]>;
623
+ /** The text content. */
624
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
625
+ /** Whether the text is displayed in bold. */
626
+ bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
627
+ /** Whether the text is displayed in italic. */
628
+ italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
629
+ /** Font size of the text. */
630
+ text_size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
631
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
632
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
633
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
634
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
635
+ }>, Schema.Struct<{
636
+ /** Comment type (``markdown``). */
637
+ type: Schema.Literal<["markdown"]>;
638
+ /** Markdown content. */
639
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
640
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
641
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
642
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
643
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
644
+ }>, Schema.Struct<{
645
+ /** Comment type (``frame``). */
646
+ type: Schema.Literal<["frame"]>;
647
+ /** Title displayed on the frame header. */
648
+ title: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
649
+ /** Step labels or indices contained within this frame. */
650
+ contains_steps: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
651
+ /** Comment labels or indices contained within this frame. */
652
+ contains_comments: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
653
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
654
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
655
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
656
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
657
+ }>, Schema.Struct<{
658
+ /** Comment type (``freehand``). */
659
+ type: Schema.Literal<["freehand"]>;
660
+ /** Line thickness. */
661
+ thickness: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
662
+ /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
663
+ line: Schema.optional<Schema.Union<[Schema.Array$<Schema.Array$<typeof Schema.Number>>, typeof Schema.Null]>>;
664
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
665
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
666
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
667
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
668
+ }>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
669
+ /** Comment type (``text``). */
670
+ type: Schema.Literal<["text"]>;
671
+ /** The text content. */
672
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
673
+ /** Whether the text is displayed in bold. */
674
+ bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
675
+ /** Whether the text is displayed in italic. */
676
+ italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
677
+ /** Font size of the text. */
678
+ text_size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
679
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
680
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
681
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
682
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
683
+ }>, Schema.Struct<{
684
+ /** Comment type (``markdown``). */
685
+ type: Schema.Literal<["markdown"]>;
686
+ /** Markdown content. */
687
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
688
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
689
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
690
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
691
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
692
+ }>, Schema.Struct<{
693
+ /** Comment type (``frame``). */
694
+ type: Schema.Literal<["frame"]>;
695
+ /** Title displayed on the frame header. */
696
+ title: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
697
+ /** Step labels or indices contained within this frame. */
698
+ contains_steps: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
699
+ /** Comment labels or indices contained within this frame. */
700
+ contains_comments: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
701
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
702
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
703
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
704
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
705
+ }>, Schema.Struct<{
706
+ /** Comment type (``freehand``). */
707
+ type: Schema.Literal<["freehand"]>;
708
+ /** Line thickness. */
709
+ thickness: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
710
+ /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
711
+ line: Schema.optional<Schema.Union<[Schema.Array$<Schema.Array$<typeof Schema.Number>>, typeof Schema.Null]>>;
712
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
713
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
714
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
715
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
716
+ }>]>>, typeof Schema.Null]>>;
717
+ /** Workflow creators. Can be schema.org Person (https://schema.org/Person) or Organization (https://schema.org/Organization) entities. */
718
+ creator: Schema.optional<Schema.Union<[Schema.Array$<Schema.Union<[Schema.Struct<{
719
+ /** Creator type discriminator (``Person``). */
720
+ class: Schema.Literal<["Person"]>;
721
+ /** Given (first) name. */
722
+ givenName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
723
+ /** Family (last) name. */
724
+ familyName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
725
+ /** Honorific prefix (e.g. ``Dr``, ``Prof``). */
726
+ honorificPrefix: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
727
+ /** Honorific suffix (e.g. ``M.D.``, ``PhD``). */
728
+ honorificSuffix: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
729
+ /** Job title or role. */
730
+ jobTitle: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
731
+ name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
732
+ identifier: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
733
+ url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
734
+ email: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
735
+ image: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
736
+ address: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
737
+ alternateName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
738
+ telephone: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
739
+ faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
740
+ }>, Schema.Struct<{
741
+ /** Creator type discriminator (``Organization``). */
742
+ class: Schema.Literal<["Organization"]>;
743
+ name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
744
+ identifier: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
745
+ url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
746
+ email: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
747
+ image: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
748
+ address: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
749
+ alternateName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
750
+ telephone: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
751
+ faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
752
+ }>]>>, typeof Schema.Null]>>;
753
+ /** Must be a valid license listed at https://spdx.org/licenses/ */
754
+ license: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
755
+ /** If listed should correspond to the release of the workflow in its source reposiory. */
756
+ release: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
757
+ uuid: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
758
+ inputs: Schema.Union<[Schema.Array$<Schema.Struct<{
759
+ /** The unique identifier for this object. */
760
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
761
+ /** A short, human-readable label of this object. */
762
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
763
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
764
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
765
+ /** Specify valid types of data that may be assigned to this parameter. */
766
+ type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>>]>>;
767
+ /** If set to true, `WorkflowInputParameter` is not required to submit the workflow. */
768
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
769
+ /** Specify datatype extension for valid input datasets. */
770
+ format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
771
+ /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
772
+ collection_type: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
773
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
774
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
775
+ top: typeof Schema.Number;
776
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
777
+ left: typeof Schema.Number;
778
+ }>]>>;
779
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
780
+ }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
781
+ /** The unique identifier for this object. */
782
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
783
+ /** A short, human-readable label of this object. */
784
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
785
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
786
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
787
+ /** Specify valid types of data that may be assigned to this parameter. */
788
+ type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>>]>>;
789
+ /** If set to true, `WorkflowInputParameter` is not required to submit the workflow. */
790
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
791
+ /** Specify datatype extension for valid input datasets. */
792
+ format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
793
+ /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
794
+ collection_type: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
795
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
796
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
797
+ top: typeof Schema.Number;
798
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
799
+ left: typeof Schema.Number;
800
+ }>]>>;
801
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
802
+ }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
803
+ outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
804
+ /** The unique identifier for this object. */
805
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
806
+ /** A short, human-readable label of this object. */
807
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
808
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
809
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
810
+ /** Specifies workflow parameter that supply the value of to the output parameter. */
811
+ outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
812
+ /** Specify valid types of data that may be assigned to this parameter. */
813
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
814
+ }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
815
+ /** The unique identifier for this object. */
816
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
817
+ /** A short, human-readable label of this object. */
818
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
819
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
820
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
821
+ /** Specifies workflow parameter that supply the value of to the output parameter. */
822
+ outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
823
+ /** Specify valid types of data that may be assigned to this parameter. */
824
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
825
+ }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
826
+ }>;
827
+ export type GalaxyWorkflow = typeof GalaxyWorkflowSchema.Type;
828
+ /**
829
+ * This represents a non-input step a Galaxy Workflow.
830
+
831
+ # A note about `state` and `tool_state` fields.
832
+
833
+ Only one or the other should be specified. These are two ways to represent the "state"
834
+ of a tool at this workflow step. Both are essentially maps from parameter names to
835
+ parameter values.
836
+
837
+ `tool_state` is much more low-level and expects a flat dictionary with each value a JSON
838
+ dump. Nested tool structures such as conditionals and repeats should have all their values
839
+ in the JSON dumped string. In general `tool_state` may be present in workflows exported from
840
+ Galaxy but shouldn't be written by humans.
841
+
842
+ `state` can contained a typed map. Repeat values can be represented as YAML arrays. An alternative
843
+ to representing `state` this way is defining inputs with default values.
844
+ */
845
+ export declare const WorkflowStepSchema: Schema.Struct<{
846
+ /** Defines the input parameters of the workflow step. The process is ready to run when all required input parameters are associated with concrete values. Input parameters include a schema for each p... */
847
+ in: Schema.optional<Schema.Union<[Schema.Array$<Schema.Struct<{
848
+ /** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`. The default must be applied prior to scattering or evaluating `va... */
849
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
850
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
851
+ source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
852
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
853
+ }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
854
+ /** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`. The default must be applied prior to scattering or evaluating `va... */
855
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
856
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
857
+ source: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
858
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
859
+ }>, typeof Schema.String]>>, typeof Schema.Null]>>;
860
+ /** Defines the parameters representing the output of the process. May be used to generate and/or validate the output object. This can also be called 'outputs' for legacy reasons - but the resulting ... */
861
+ out: Schema.optional<Schema.Union<[Schema.Array$<Schema.Union<[Schema.Struct<{
862
+ add_tags: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
863
+ change_datatype: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
864
+ delete_intermediate_datasets: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
865
+ hide: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
866
+ remove_tags: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
867
+ rename: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
868
+ set_columns: Schema.optional<Schema.Union<[Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
869
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
870
+ }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
871
+ add_tags: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
872
+ change_datatype: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
873
+ delete_intermediate_datasets: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
874
+ hide: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
875
+ remove_tags: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
876
+ rename: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
877
+ set_columns: Schema.optional<Schema.Union<[Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
878
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
879
+ }>, typeof Schema.String]>>, typeof Schema.Null]>>;
880
+ /** Structured tool state. */
881
+ state: Schema.optional<Schema.Union<[Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
882
+ /** Unstructured tool state. */
883
+ tool_state: Schema.optional<Schema.Union<[typeof Schema.String, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
884
+ /** Workflow step module's type (defaults to 'tool'). */
885
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["tool", "subworkflow", "pause", "pick_value"]>]>>;
886
+ /** Specifies a subworkflow to run. May be an inline workflow definition, a URL string, or an @import reference dict. */
887
+ run: Schema.optional<Schema.Union<[Schema.Struct<{
888
+ /** The unique identifier for this object. */
889
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
890
+ class: Schema.Literal<["GalaxyWorkflow"]>;
891
+ /** A short, human-readable label of this object. */
892
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
893
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
894
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
895
+ /** The individual steps that make up the workflow. Each step is executed when all of its input data links are fulfilled. */
896
+ steps: Schema.Union<[Schema.Array$<Schema.suspend<any, any, never>>, Schema.Record$<typeof Schema.String, Schema.suspend<any, any, never>>]>;
897
+ /** Workflow invocation report template. */
898
+ report: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
899
+ /** Galaxy flavored Markdown to define an invocation report. */
900
+ markdown: typeof Schema.String;
901
+ }>]>>;
902
+ /** Tags for the workflow. */
903
+ tags: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.String>, typeof Schema.Null]>>;
904
+ /** Visual annotations for the workflow editor canvas. Comments are non-functional and do not affect workflow execution. May be specified as a list or as a mapping keyed by label. */
905
+ comments: Schema.optional<Schema.Union<[Schema.Array$<Schema.Union<[Schema.Struct<{
906
+ /** Comment type (``text``). */
907
+ type: Schema.Literal<["text"]>;
908
+ /** The text content. */
909
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
910
+ /** Whether the text is displayed in bold. */
911
+ bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
912
+ /** Whether the text is displayed in italic. */
913
+ italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
914
+ /** Font size of the text. */
915
+ text_size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
916
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
917
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
918
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
919
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
920
+ }>, Schema.Struct<{
921
+ /** Comment type (``markdown``). */
922
+ type: Schema.Literal<["markdown"]>;
923
+ /** Markdown content. */
924
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
925
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
926
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
927
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
928
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
929
+ }>, Schema.Struct<{
930
+ /** Comment type (``frame``). */
931
+ type: Schema.Literal<["frame"]>;
932
+ /** Title displayed on the frame header. */
933
+ title: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
934
+ /** Step labels or indices contained within this frame. */
935
+ contains_steps: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
936
+ /** Comment labels or indices contained within this frame. */
937
+ contains_comments: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
938
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
939
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
940
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
941
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
942
+ }>, Schema.Struct<{
943
+ /** Comment type (``freehand``). */
944
+ type: Schema.Literal<["freehand"]>;
945
+ /** Line thickness. */
946
+ thickness: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
947
+ /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
948
+ line: Schema.optional<Schema.Union<[Schema.Array$<Schema.Array$<typeof Schema.Number>>, typeof Schema.Null]>>;
949
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
950
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
951
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
952
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
953
+ }>]>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
954
+ /** Comment type (``text``). */
955
+ type: Schema.Literal<["text"]>;
956
+ /** The text content. */
957
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
958
+ /** Whether the text is displayed in bold. */
959
+ bold: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
960
+ /** Whether the text is displayed in italic. */
961
+ italic: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Boolean]>>;
962
+ /** Font size of the text. */
963
+ text_size: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
964
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
965
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
966
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
967
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
968
+ }>, Schema.Struct<{
969
+ /** Comment type (``markdown``). */
970
+ type: Schema.Literal<["markdown"]>;
971
+ /** Markdown content. */
972
+ text: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
973
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
974
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
975
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
976
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
977
+ }>, Schema.Struct<{
978
+ /** Comment type (``frame``). */
979
+ type: Schema.Literal<["frame"]>;
980
+ /** Title displayed on the frame header. */
981
+ title: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
982
+ /** Step labels or indices contained within this frame. */
983
+ contains_steps: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
984
+ /** Comment labels or indices contained within this frame. */
985
+ contains_comments: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<Schema.Union<[typeof Schema.String, typeof Schema.Number]>>]>>;
986
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
987
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
988
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
989
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
990
+ }>, Schema.Struct<{
991
+ /** Comment type (``freehand``). */
992
+ type: Schema.Literal<["freehand"]>;
993
+ /** Line thickness. */
994
+ thickness: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Number]>>;
995
+ /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
996
+ line: Schema.optional<Schema.Union<[Schema.Array$<Schema.Array$<typeof Schema.Number>>, typeof Schema.Null]>>;
997
+ position: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
998
+ size: Schema.optional<Schema.Union<[Schema.Array$<typeof Schema.Number>, typeof Schema.Null]>>;
999
+ color: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1000
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1001
+ }>]>>, typeof Schema.Null]>>;
1002
+ /** Workflow creators. Can be schema.org Person (https://schema.org/Person) or Organization (https://schema.org/Organization) entities. */
1003
+ creator: Schema.optional<Schema.Union<[Schema.Array$<Schema.Union<[Schema.Struct<{
1004
+ /** Creator type discriminator (``Person``). */
1005
+ class: Schema.Literal<["Person"]>;
1006
+ /** Given (first) name. */
1007
+ givenName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1008
+ /** Family (last) name. */
1009
+ familyName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1010
+ /** Honorific prefix (e.g. ``Dr``, ``Prof``). */
1011
+ honorificPrefix: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1012
+ /** Honorific suffix (e.g. ``M.D.``, ``PhD``). */
1013
+ honorificSuffix: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1014
+ /** Job title or role. */
1015
+ jobTitle: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1016
+ name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1017
+ identifier: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1018
+ url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1019
+ email: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1020
+ image: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1021
+ address: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1022
+ alternateName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1023
+ telephone: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1024
+ faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1025
+ }>, Schema.Struct<{
1026
+ /** Creator type discriminator (``Organization``). */
1027
+ class: Schema.Literal<["Organization"]>;
1028
+ name: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1029
+ identifier: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1030
+ url: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1031
+ email: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1032
+ image: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1033
+ address: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1034
+ alternateName: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1035
+ telephone: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1036
+ faxNumber: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1037
+ }>]>>, typeof Schema.Null]>>;
1038
+ /** Must be a valid license listed at https://spdx.org/licenses/ */
1039
+ license: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1040
+ /** If listed should correspond to the release of the workflow in its source reposiory. */
1041
+ release: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1042
+ uuid: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1043
+ inputs: Schema.Union<[Schema.Array$<Schema.Struct<{
1044
+ /** The unique identifier for this object. */
1045
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1046
+ /** A short, human-readable label of this object. */
1047
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1048
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
1049
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1050
+ /** Specify valid types of data that may be assigned to this parameter. */
1051
+ type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>>]>>;
1052
+ /** If set to true, `WorkflowInputParameter` is not required to submit the workflow. */
1053
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1054
+ /** Specify datatype extension for valid input datasets. */
1055
+ format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
1056
+ /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
1057
+ collection_type: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1058
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
1059
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
1060
+ top: typeof Schema.Number;
1061
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
1062
+ left: typeof Schema.Number;
1063
+ }>]>>;
1064
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
1065
+ }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
1066
+ /** The unique identifier for this object. */
1067
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1068
+ /** A short, human-readable label of this object. */
1069
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1070
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
1071
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1072
+ /** Specify valid types of data that may be assigned to this parameter. */
1073
+ type: Schema.optional<Schema.Union<[Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>, typeof Schema.Null, Schema.Array$<Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>>]>>;
1074
+ /** If set to true, `WorkflowInputParameter` is not required to submit the workflow. */
1075
+ optional: Schema.optional<Schema.Union<[typeof Schema.Boolean, typeof Schema.Null]>>;
1076
+ /** Specify datatype extension for valid input datasets. */
1077
+ format: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
1078
+ /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
1079
+ collection_type: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1080
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
1081
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
1082
+ top: typeof Schema.Number;
1083
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
1084
+ left: typeof Schema.Number;
1085
+ }>]>>;
1086
+ default: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.Unknown]>>;
1087
+ }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
1088
+ outputs: Schema.Union<[Schema.Array$<Schema.Struct<{
1089
+ /** The unique identifier for this object. */
1090
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1091
+ /** A short, human-readable label of this object. */
1092
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1093
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
1094
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1095
+ /** Specifies workflow parameter that supply the value of to the output parameter. */
1096
+ outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1097
+ /** Specify valid types of data that may be assigned to this parameter. */
1098
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
1099
+ }>>, Schema.Record$<typeof Schema.String, Schema.Union<[Schema.Struct<{
1100
+ /** The unique identifier for this object. */
1101
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1102
+ /** A short, human-readable label of this object. */
1103
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1104
+ /** A documentation string for this object, or an array of strings which should be concatenated. */
1105
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1106
+ /** Specifies workflow parameter that supply the value of to the output parameter. */
1107
+ outputSource: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1108
+ /** Specify valid types of data that may be assigned to this parameter. */
1109
+ type: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Literal<["null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection"]>]>>;
1110
+ }>, typeof Schema.String]>>, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>]>;
1111
+ }>, typeof Schema.String, Schema.Record$<typeof Schema.String, typeof Schema.Unknown>, typeof Schema.Null]>>;
1112
+ runtime_inputs: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Array$<typeof Schema.String>]>>;
1113
+ /** If defined, only run the step when the expression evaluates to `true`. If `false` the step is skipped. A skipped step produces a `null` on each output. Expression should be an ecma5.1 expression. */
1114
+ when: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1115
+ uuid: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1116
+ errors: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1117
+ tool_id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1118
+ tool_shed_repository: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
1119
+ /** The name of the tool shed repository this tool can be found in. */
1120
+ name: typeof Schema.String;
1121
+ /** The revision of the tool shed repository this tool can be found in. */
1122
+ changeset_revision: typeof Schema.String;
1123
+ /** The owner of the tool shed repository this tool can be found in. */
1124
+ owner: typeof Schema.String;
1125
+ /** The URI of the tool shed containing the repository this tool can be found in - typically this should be toolshed.g2.bx.psu.edu. */
1126
+ tool_shed: typeof Schema.String;
1127
+ }>]>>;
1128
+ tool_version: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1129
+ position: Schema.optional<Schema.Union<[typeof Schema.Null, Schema.Struct<{
1130
+ /** Relative vertical position of the step's node when rendered in the workflow editor. */
1131
+ top: typeof Schema.Number;
1132
+ /** Relative horizontal position of the step's node when rendered in the workflow editor. */
1133
+ left: typeof Schema.Number;
1134
+ }>]>>;
1135
+ doc: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String, Schema.Array$<typeof Schema.String>]>>;
1136
+ label: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1137
+ id: Schema.optional<Schema.Union<[typeof Schema.Null, typeof Schema.String]>>;
1138
+ }>;
1139
+ export type WorkflowStep = typeof WorkflowStepSchema.Type;
1140
+ //# sourceMappingURL=gxformat2.effect.d.ts.map