@galaxy-tool-util/gxwf-web 1.0.0 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (134) hide show
  1. package/dist/app.js +3 -3
  2. package/dist/app.js.map +1 -1
  3. package/dist/generated/api-types.d.ts +344 -0
  4. package/dist/generated/api-types.d.ts.map +1 -1
  5. package/dist/router.d.ts +2 -1
  6. package/dist/router.d.ts.map +1 -1
  7. package/dist/router.js +77 -1
  8. package/dist/router.js.map +1 -1
  9. package/dist/tool-cache.d.ts +63 -0
  10. package/dist/tool-cache.d.ts.map +1 -0
  11. package/dist/tool-cache.js +118 -0
  12. package/dist/tool-cache.js.map +1 -0
  13. package/dist/workflows.d.ts +13 -0
  14. package/dist/workflows.d.ts.map +1 -1
  15. package/dist/workflows.js +19 -1
  16. package/dist/workflows.js.map +1 -1
  17. package/openapi.json +296 -0
  18. package/package.json +5 -4
  19. package/public/assets/FileView-BjO71gOh.css +1 -0
  20. package/public/assets/FileView-CsOpVj29.js +1389 -0
  21. package/public/assets/ToolCacheView-E1LZS0xv.css +1 -0
  22. package/public/assets/ToolCacheView-bRFTq8lT.js +120 -0
  23. package/public/assets/WorkflowView-CRSqinCX.js +198 -0
  24. package/public/assets/WorkflowView-DIO7pNhW.css +1 -0
  25. package/public/assets/_baseFor-CPf-8vV8.js +1 -0
  26. package/public/assets/arc-Cwod2qo3.js +1 -0
  27. package/public/assets/architecture-YZFGNWBL-DQVw0vyH.js +1 -0
  28. package/public/assets/architectureDiagram-Q4EWVU46-jinf4bpr.js +36 -0
  29. package/public/assets/array-DYRGGQae.js +1 -0
  30. package/public/assets/blockDiagram-DXYQGD6D-DyH9QtyX.js +132 -0
  31. package/public/assets/browser-DVDf39JZ.js +107 -0
  32. package/public/assets/c4Diagram-AHTNJAMY-eIaaNFF5.js +10 -0
  33. package/public/assets/channel-B9wkeALp.js +1 -0
  34. package/public/assets/chunk-2KRD3SAO-CbETq-ui.js +1 -0
  35. package/public/assets/chunk-336JU56O-K6Z1vrz8.js +2 -0
  36. package/public/assets/chunk-426QAEUC-B7stkjff.js +1 -0
  37. package/public/assets/chunk-4BX2VUAB-DAYhiPDD.js +1 -0
  38. package/public/assets/chunk-4TB4RGXK-DzYiMt8K.js +206 -0
  39. package/public/assets/chunk-55IACEB6-Bs8d_KN7.js +1 -0
  40. package/public/assets/chunk-5FUZZQ4R-BXjMW0vl.js +62 -0
  41. package/public/assets/chunk-5PVQY5BW-DpYMb9bR.js +2 -0
  42. package/public/assets/chunk-67CJDMHE-CYVqyDPX.js +1 -0
  43. package/public/assets/chunk-7N4EOEYR-DSMoHHQB.js +1 -0
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  45. package/public/assets/chunk-BSJP7CBP-DG8ixKk7.js +1 -0
  46. package/public/assets/chunk-Bj-mKKzh.js +1 -0
  47. package/public/assets/chunk-CIAEETIT-ChsKIYeM.js +1 -0
  48. package/public/assets/chunk-EDXVE4YY-B13SDZ3c.js +1 -0
  49. package/public/assets/chunk-ENJZ2VHE-DrVCiAoi.js +10 -0
  50. package/public/assets/chunk-FMBD7UC4-Cwhu6s_B.js +15 -0
  51. package/public/assets/chunk-FOC6F5B3-CXZWmV4p.js +1 -0
  52. package/public/assets/chunk-ICPOFSXX-DwxYmUOT.js +121 -0
  53. package/public/assets/chunk-K5T4RW27-DjpJ2Af8.js +94 -0
  54. package/public/assets/chunk-KGLVRYIC-l_Galra0.js +1 -0
  55. package/public/assets/chunk-LIHQZDEY-SFFOoGZ_.js +1 -0
  56. package/public/assets/chunk-ORNJ4GCN-CJCUlfd1.js +1 -0
  57. package/public/assets/chunk-OYMX7WX6-CmfQJYSW.js +231 -0
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  59. package/public/assets/chunk-U2HBQHQK-oBXc92ns.js +70 -0
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  61. package/public/assets/chunk-XPW4576I-DLAs5a7i.js +32 -0
  62. package/public/assets/chunk-YZCP3GAM-0MxWrEbo.js +1 -0
  63. package/public/assets/chunk-ZZ45TVLE-BqOxN5U6.js +1 -0
  64. package/public/assets/classDiagram-6PBFFD2Q-A_f6K02B.js +1 -0
  65. package/public/assets/classDiagram-v2-HSJHXN6E-DrcrbPO1.js +1 -0
  66. package/public/assets/clone-grQBEjNN.js +1 -0
  67. package/public/assets/cose-bilkent-S5V4N54A-D4wikFr1.js +1 -0
  68. package/public/assets/cytoscape-dagre-CO2HNyOd.js +1 -0
  69. package/public/assets/cytoscape-popper-D30IDL9Y.js +1 -0
  70. package/public/assets/cytoscape.esm-Cj_wycbY.js +321 -0
  71. package/public/assets/dagre-BxiFovGJ.js +1 -0
  72. package/public/assets/dagre-KV5264BT-1zSgR5z0.js +4 -0
  73. package/public/assets/defaultLocale-Du1XY3Dp.js +1 -0
  74. package/public/assets/diagram-5BDNPKRD-DpWxP0aE.js +10 -0
  75. package/public/assets/diagram-G4DWMVQ6-BhUB45RQ.js +24 -0
  76. package/public/assets/diagram-MMDJMWI5-D3tAT1JA.js +43 -0
  77. package/public/assets/diagram-TYMM5635-Y66BFGuY.js +24 -0
  78. package/public/assets/dist-J4JWBlIj.js +1 -0
  79. package/public/assets/erDiagram-SMLLAGMA-olVV48Hp.js +85 -0
  80. package/public/assets/flatten-CJeJD637.js +1 -0
  81. package/public/assets/flowDiagram-DWJPFMVM-QayyKS33.js +162 -0
  82. package/public/assets/ganttDiagram-T4ZO3ILL-DmE3LL1i.js +292 -0
  83. package/public/assets/gitGraph-7Q5UKJZL-CFN6X8um.js +1 -0
  84. package/public/assets/gitGraphDiagram-UUTBAWPF-KhK3dvbQ.js +106 -0
  85. package/public/assets/graphlib-Bi-ymRsv.js +1 -0
  86. package/public/assets/{iconv-lite-umd-B_p9IM1r.js → iconv-lite-umd-D-w9FMFt.js} +1 -1
  87. package/public/assets/index-4Ycp0GGC.js +1824 -0
  88. package/public/assets/index-DwHu09Uc.css +1 -0
  89. package/public/assets/info-OMHHGYJF-DTuIGRm4.js +1 -0
  90. package/public/assets/infoDiagram-42DDH7IO-BmhfgIe-.js +2 -0
  91. package/public/assets/init-B5BXBRcm.js +1 -0
  92. package/public/assets/isEmpty-D5KDGotR.js +1 -0
  93. package/public/assets/ishikawaDiagram-UXIWVN3A-D-BfQrbQ.js +70 -0
  94. package/public/assets/journeyDiagram-VCZTEJTY-CT0HRztw.js +139 -0
  95. package/public/assets/{jschardet-CGqe33Rd.js → jschardet-tASGyPDl.js} +1 -1
  96. package/public/assets/kanban-definition-6JOO6SKY-BZnydE-0.js +89 -0
  97. package/public/assets/katex-B-EfS3nw.js +257 -0
  98. package/public/assets/lib-qyXcPJAL.js +1 -0
  99. package/public/assets/line-qKqldnLj.js +1 -0
  100. package/public/assets/linear-BiJptqH_.js +1 -0
  101. package/public/assets/mermaid-parser.core-C09j9HB7.js +4 -0
  102. package/public/assets/mermaid.core-BDhviqRd.js +11 -0
  103. package/public/assets/mindmap-definition-QFDTVHPH-Dt3WMSPV.js +96 -0
  104. package/public/assets/ordinal-BDi6f4xk.js +1 -0
  105. package/public/assets/packet-4T2RLAQJ-tlarMvy0.js +1 -0
  106. package/public/assets/path-CNO468J-.js +1 -0
  107. package/public/assets/pie-ZZUOXDRM-BQlXSSpD.js +1 -0
  108. package/public/assets/pieDiagram-DEJITSTG-Yqe8uCAr.js +30 -0
  109. package/public/assets/purify.es-PlwmxSh4.js +2 -0
  110. package/public/assets/quadrantDiagram-34T5L4WZ-D6S_SKNN.js +7 -0
  111. package/public/assets/radar-PYXPWWZC-CazFChG-.js +1 -0
  112. package/public/assets/reduce-CulceXYF.js +1 -0
  113. package/public/assets/requirementDiagram-MS252O5E-jfbAS50v.js +84 -0
  114. package/public/assets/rough.esm-Ci7Kjt46.js +1 -0
  115. package/public/assets/sankeyDiagram-XADWPNL6-BAUJwgc9.js +10 -0
  116. package/public/assets/sequenceDiagram-FGHM5R23-D7HLbuOf.js +157 -0
  117. package/public/assets/src-Com_8MQM.js +1 -0
  118. package/public/assets/stateDiagram-FHFEXIEX-BX7o31BE.js +1 -0
  119. package/public/assets/stateDiagram-v2-QKLJ7IA2-Co5H7aCg.js +1 -0
  120. package/public/assets/timeline-definition-GMOUNBTQ-CZLMeEm3.js +120 -0
  121. package/public/assets/tippy-Lcq2UOUK.css +1 -0
  122. package/public/assets/tippy.esm-BUtiz0E2.js +1 -0
  123. package/public/assets/treeView-SZITEDCU-DF1ehvU3.js +1 -0
  124. package/public/assets/treemap-W4RFUUIX-BPejKas6.js +1 -0
  125. package/public/assets/useApi-CXAk43j3.js +1511 -0
  126. package/public/assets/useOperation-6c4UXxWc.js +74 -0
  127. package/public/assets/useToolInfoService-BoFJqmDR.js +276 -0
  128. package/public/assets/vennDiagram-DHZGUBPP-CU_yL8Jq.js +34 -0
  129. package/public/assets/wardley-RL74JXVD-BMMwMdqw.js +1 -0
  130. package/public/assets/wardleyDiagram-NUSXRM2D-BJ2G793c.js +20 -0
  131. package/public/assets/xychartDiagram-5P7HB3ND-CtCVgkGt.js +7 -0
  132. package/public/index.html +4 -2
  133. package/public/assets/index-BuA7-9w3.js +0 -4768
  134. package/public/assets/index-CWluWhm0.css +0 -1
package/openapi.json CHANGED
@@ -1016,6 +1016,170 @@
1016
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  }
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  }
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  }
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+ },
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+ "/api/tool-cache": {
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+ "get": {
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+ "tags": ["tool-cache"],
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+ "summary": "List cached tools and aggregate stats",
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+ "operationId": "list_tool_cache_api_tool_cache_get",
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+ "parameters": [
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+ {
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+ "name": "decode",
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+ "in": "query",
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+ "required": false,
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+ "description": "Set to '1' to probe each entry for ParsedTool decode-ability. Adds N file reads.",
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+ "schema": { "type": "string", "enum": ["1"], "title": "Decode" }
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+ }
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+ ],
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+ "responses": {
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+ "200": {
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+ "description": "Successful Response",
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+ "content": {
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+ "application/json": {
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+ "schema": { "$ref": "#/components/schemas/ToolCacheListResponse" }
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+ }
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+ }
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+ }
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+ }
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+ },
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+ "delete": {
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+ "tags": ["tool-cache"],
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+ "summary": "Clear all entries (or by tool-id prefix)",
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+ "operationId": "clear_tool_cache_api_tool_cache_delete",
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+ "parameters": [
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+ {
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+ "name": "prefix",
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+ "in": "query",
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+ "required": false,
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+ "schema": { "type": "string", "title": "Prefix" }
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+ }
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+ ],
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+ "responses": {
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+ "200": {
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+ "description": "Successful Response",
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+ "content": {
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+ "application/json": {
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+ "schema": { "$ref": "#/components/schemas/ToolCacheClearResponse" }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ },
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+ "/api/tool-cache/stats": {
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+ "get": {
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+ "tags": ["tool-cache"],
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+ "summary": "Aggregate cache stats",
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+ "operationId": "get_tool_cache_stats_api_tool_cache_stats_get",
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+ "responses": {
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+ "200": {
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+ "description": "Successful Response",
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+ "content": {
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+ "application/json": {
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+ "schema": { "$ref": "#/components/schemas/CacheStats" }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ },
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+ "/api/tool-cache/refetch": {
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+ "post": {
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+ "tags": ["tool-cache"],
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+ "summary": "Re-fetch a tool from its source (replacing the cached entry)",
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+ "operationId": "refetch_tool_cache_api_tool_cache_refetch_post",
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+ "requestBody": {
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+ "required": true,
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+ "content": {
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+ "application/json": {
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+ "schema": { "$ref": "#/components/schemas/ToolCacheRefetchRequest" }
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+ }
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+ }
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+ },
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+ "responses": {
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+ "200": {
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+ "description": "Successful Response",
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+ "content": {
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+ "application/json": {
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+ "schema": { "$ref": "#/components/schemas/ToolCacheRefetchResponse" }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ },
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+ "/api/tool-cache/add": {
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+ "post": {
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+ "tags": ["tool-cache"],
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+ "summary": "Populate the cache for a known tool id (diagnostic)",
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+ "operationId": "add_tool_cache_api_tool_cache_add_post",
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+ "requestBody": {
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+ "required": true,
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+ "content": {
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+ "application/json": {
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+ "schema": { "$ref": "#/components/schemas/ToolCacheAddRequest" }
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+ }
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+ }
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+ },
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+ "responses": {
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+ "200": {
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+ "description": "Successful Response",
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+ "content": {
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+ "application/json": {
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+ "schema": { "$ref": "#/components/schemas/ToolCacheAddResponse" }
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+ }
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+ }
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+ }
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+ }
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+ }
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+ },
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+ "/api/tool-cache/{cacheKey}": {
1137
+ "get": {
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+ "tags": ["tool-cache"],
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+ "summary": "Get the raw cached payload",
1140
+ "operationId": "read_tool_cache_api_tool_cache_key_get",
1141
+ "parameters": [
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+ {
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+ "name": "cacheKey",
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+ "in": "path",
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+ "required": true,
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+ "schema": { "type": "string", "title": "Cache Key" }
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+ }
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+ ],
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+ "responses": {
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+ "200": {
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+ "description": "Successful Response",
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+ "content": {
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+ "application/json": {
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+ "schema": { "$ref": "#/components/schemas/ToolCacheRawResponse" }
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+ }
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+ }
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+ }
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+ }
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+ },
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+ "delete": {
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+ "tags": ["tool-cache"],
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+ "summary": "Delete a single cache entry",
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+ "operationId": "delete_tool_cache_api_tool_cache_key_delete",
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+ "parameters": [
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+ {
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+ "name": "cacheKey",
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+ "in": "path",
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+ "required": true,
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+ "schema": { "type": "string", "title": "Cache Key" }
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+ }
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+ ],
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+ "responses": {
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+ "200": {
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+ "description": "Successful Response",
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+ "content": {
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+ "application/json": {
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+ "schema": { "$ref": "#/components/schemas/ToolCacheDeleteResponse" }
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+ }
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+ }
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+ }
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+ }
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+ }
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  }
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  },
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  "components": {
@@ -2016,6 +2180,22 @@
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  "title": "Lint Warnings",
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  "default": 0
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  },
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+ "lint_error_messages": {
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+ "items": {
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+ "type": "string"
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+ },
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+ "type": "array",
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+ "title": "Lint Error Messages",
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+ "default": []
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+ },
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+ "lint_warning_messages": {
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+ "items": {
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+ "type": "string"
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+ },
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+ "type": "array",
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+ "title": "Lint Warning Messages",
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+ "default": []
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+ },
2019
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  "results": {
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  "items": {
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  "$ref": "#/components/schemas/ValidationStepResult"
@@ -2569,6 +2749,122 @@
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  ],
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  "title": "WorkflowIndex",
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  "description": "Index of all workflows in the target directory."
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+ },
2753
+ "CachedToolEntry": {
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+ "type": "object",
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+ "title": "CachedToolEntry",
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+ "required": [
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+ "cacheKey",
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+ "toolId",
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+ "toolVersion",
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+ "source",
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+ "sourceUrl",
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+ "cachedAt",
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+ "decodable",
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+ "refetchable"
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+ ],
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+ "properties": {
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+ "cacheKey": { "type": "string", "title": "Cache Key" },
2768
+ "toolId": { "type": "string", "title": "Tool Id" },
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+ "toolVersion": { "type": "string", "title": "Tool Version" },
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+ "source": { "type": "string", "title": "Source" },
2771
+ "sourceUrl": { "type": "string", "title": "Source Url" },
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+ "cachedAt": { "type": "string", "title": "Cached At" },
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+ "sizeBytes": { "type": "integer", "title": "Size Bytes" },
2774
+ "decodable": { "type": "boolean", "title": "Decodable" },
2775
+ "toolshedUrl": { "type": "string", "title": "Toolshed Url" },
2776
+ "refetchable": { "type": "boolean", "title": "Refetchable" }
2777
+ }
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+ },
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+ "CacheStats": {
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+ "type": "object",
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+ "title": "CacheStats",
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+ "required": ["count", "bySource"],
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+ "properties": {
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+ "count": { "type": "integer", "title": "Count" },
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+ "totalBytes": { "type": "integer", "title": "Total Bytes" },
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+ "bySource": {
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+ "type": "object",
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+ "additionalProperties": { "type": "integer" },
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+ "title": "By Source"
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+ },
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+ "oldest": { "type": "string", "title": "Oldest" },
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+ "newest": { "type": "string", "title": "Newest" }
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+ }
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+ },
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+ "ToolCacheListResponse": {
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+ "type": "object",
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+ "title": "ToolCacheListResponse",
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+ "required": ["entries", "stats"],
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+ "properties": {
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+ "entries": {
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+ "type": "array",
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+ "items": { "$ref": "#/components/schemas/CachedToolEntry" }
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+ },
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+ "stats": { "$ref": "#/components/schemas/CacheStats" }
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+ }
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+ },
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+ "ToolCacheRawResponse": {
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+ "type": "object",
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+ "title": "ToolCacheRawResponse",
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+ "required": ["contents", "decodable"],
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+ "properties": {
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+ "contents": { "title": "Contents" },
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+ "decodable": { "type": "boolean", "title": "Decodable" }
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+ }
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+ },
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+ "ToolCacheDeleteResponse": {
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+ "type": "object",
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+ "title": "ToolCacheDeleteResponse",
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+ "required": ["removed"],
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+ "properties": {
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+ "removed": { "type": "boolean", "title": "Removed" }
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+ }
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+ },
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+ "ToolCacheClearResponse": {
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+ "type": "object",
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+ "title": "ToolCacheClearResponse",
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+ "required": ["removed"],
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+ "properties": {
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+ "removed": { "type": "integer", "title": "Removed" }
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+ }
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+ },
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+ "ToolCacheRefetchRequest": {
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+ "type": "object",
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+ "title": "ToolCacheRefetchRequest",
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+ "required": ["toolId"],
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+ "properties": {
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+ "toolId": { "type": "string", "title": "Tool Id" },
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+ "toolVersion": { "type": "string", "title": "Tool Version" }
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+ }
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+ },
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+ "ToolCacheRefetchResponse": {
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+ "type": "object",
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+ "title": "ToolCacheRefetchResponse",
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+ "required": ["cacheKey", "fetched", "alreadyCached"],
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+ "properties": {
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+ "cacheKey": { "type": "string", "title": "Cache Key" },
2847
+ "fetched": { "type": "boolean", "title": "Fetched" },
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+ "alreadyCached": { "type": "boolean", "title": "Already Cached" }
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+ }
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+ },
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+ "ToolCacheAddRequest": {
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+ "type": "object",
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+ "title": "ToolCacheAddRequest",
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+ "required": ["toolId"],
2855
+ "properties": {
2856
+ "toolId": { "type": "string", "title": "Tool Id" },
2857
+ "toolVersion": { "type": "string", "title": "Tool Version" }
2858
+ }
2859
+ },
2860
+ "ToolCacheAddResponse": {
2861
+ "type": "object",
2862
+ "title": "ToolCacheAddResponse",
2863
+ "required": ["cacheKey", "alreadyCached"],
2864
+ "properties": {
2865
+ "cacheKey": { "type": "string", "title": "Cache Key" },
2866
+ "alreadyCached": { "type": "boolean", "title": "Already Cached" }
2867
+ }
2572
2868
  }
2573
2869
  }
2574
2870
  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@galaxy-tool-util/gxwf-web",
3
- "version": "1.0.0",
3
+ "version": "1.2.0",
4
4
  "description": "Galaxy workflow development HTTP server — validate, lint, clean, convert workflows",
5
5
  "type": "module",
6
6
  "bin": {
@@ -32,9 +32,10 @@
32
32
  "dependencies": {
33
33
  "effect": "^3.21.0",
34
34
  "yaml": "^2.8.3",
35
- "@galaxy-tool-util/cli": "1.0.0",
36
- "@galaxy-tool-util/core": "1.0.0",
37
- "@galaxy-tool-util/schema": "1.0.0"
35
+ "@galaxy-tool-util/cli": "1.2.0",
36
+ "@galaxy-tool-util/connection-validation": "1.2.0",
37
+ "@galaxy-tool-util/core": "1.2.0",
38
+ "@galaxy-tool-util/schema": "1.2.0"
38
39
  },
39
40
  "devDependencies": {
40
41
  "@types/node": "^25.5.0",