@galaxy-tool-util/core 1.7.1 → 1.8.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cache/tool-cache-defaults.d.ts +6 -0
- package/dist/cache/tool-cache-defaults.d.ts.map +1 -1
- package/dist/cache/tool-cache-defaults.js +6 -0
- package/dist/cache/tool-cache-defaults.js.map +1 -1
- package/dist/cache/tool-cache.d.ts +2 -2
- package/dist/cache/tool-cache.d.ts.map +1 -1
- package/dist/cache/tool-cache.js +3 -3
- package/dist/cache/tool-cache.js.map +1 -1
- package/dist/tool-info.d.ts.map +1 -1
- package/dist/tool-info.js +2 -1
- package/dist/tool-info.js.map +1 -1
- package/package.json +2 -2
|
@@ -4,4 +4,10 @@ export declare const DEFAULT_TOOLSHED_URL = "https://toolshed.g2.bx.psu.edu";
|
|
|
4
4
|
export declare const TOOLSHED_URL_ENV_VAR = "GALAXY_TOOLSHED_URL";
|
|
5
5
|
/** Environment variable to override the cache directory. */
|
|
6
6
|
export declare const CACHE_DIR_ENV_VAR = "GALAXY_TOOL_CACHE_DIR";
|
|
7
|
+
/**
|
|
8
|
+
* Sentinel version for stock/built-in Galaxy tools (`cat1`, `__APPLY_RULES__`, …)
|
|
9
|
+
* that carry no explicit version. Mirrors the Python `_default_` convention so a
|
|
10
|
+
* cache key / schema-cache entry can still be formed instead of skipping the tool.
|
|
11
|
+
*/
|
|
12
|
+
export declare const DEFAULT_TOOL_VERSION = "_default_";
|
|
7
13
|
//# sourceMappingURL=tool-cache-defaults.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tool-cache-defaults.d.ts","sourceRoot":"","sources":["../../src/cache/tool-cache-defaults.ts"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,eAAO,MAAM,oBAAoB,mCAAmC,CAAC;AACrE,iEAAiE;AACjE,eAAO,MAAM,oBAAoB,wBAAwB,CAAC;AAC1D,4DAA4D;AAC5D,eAAO,MAAM,iBAAiB,0BAA0B,CAAC"}
|
|
1
|
+
{"version":3,"file":"tool-cache-defaults.d.ts","sourceRoot":"","sources":["../../src/cache/tool-cache-defaults.ts"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,eAAO,MAAM,oBAAoB,mCAAmC,CAAC;AACrE,iEAAiE;AACjE,eAAO,MAAM,oBAAoB,wBAAwB,CAAC;AAC1D,4DAA4D;AAC5D,eAAO,MAAM,iBAAiB,0BAA0B,CAAC;AACzD;;;;GAIG;AACH,eAAO,MAAM,oBAAoB,cAAc,CAAC"}
|
|
@@ -4,4 +4,10 @@ export const DEFAULT_TOOLSHED_URL = "https://toolshed.g2.bx.psu.edu";
|
|
|
4
4
|
export const TOOLSHED_URL_ENV_VAR = "GALAXY_TOOLSHED_URL";
|
|
5
5
|
/** Environment variable to override the cache directory. */
|
|
6
6
|
export const CACHE_DIR_ENV_VAR = "GALAXY_TOOL_CACHE_DIR";
|
|
7
|
+
/**
|
|
8
|
+
* Sentinel version for stock/built-in Galaxy tools (`cat1`, `__APPLY_RULES__`, …)
|
|
9
|
+
* that carry no explicit version. Mirrors the Python `_default_` convention so a
|
|
10
|
+
* cache key / schema-cache entry can still be formed instead of skipping the tool.
|
|
11
|
+
*/
|
|
12
|
+
export const DEFAULT_TOOL_VERSION = "_default_";
|
|
7
13
|
//# sourceMappingURL=tool-cache-defaults.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tool-cache-defaults.js","sourceRoot":"","sources":["../../src/cache/tool-cache-defaults.ts"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,MAAM,CAAC,MAAM,oBAAoB,GAAG,gCAAgC,CAAC;AACrE,iEAAiE;AACjE,MAAM,CAAC,MAAM,oBAAoB,GAAG,qBAAqB,CAAC;AAC1D,4DAA4D;AAC5D,MAAM,CAAC,MAAM,iBAAiB,GAAG,uBAAuB,CAAC"}
|
|
1
|
+
{"version":3,"file":"tool-cache-defaults.js","sourceRoot":"","sources":["../../src/cache/tool-cache-defaults.ts"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,MAAM,CAAC,MAAM,oBAAoB,GAAG,gCAAgC,CAAC;AACrE,iEAAiE;AACjE,MAAM,CAAC,MAAM,oBAAoB,GAAG,qBAAqB,CAAC;AAC1D,4DAA4D;AAC5D,MAAM,CAAC,MAAM,iBAAiB,GAAG,uBAAuB,CAAC;AACzD;;;;GAIG;AACH,MAAM,CAAC,MAAM,oBAAoB,GAAG,WAAW,CAAC"}
|
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
import { ParsedTool } from "@galaxy-tool-util/schema";
|
|
2
2
|
import { CacheIndex } from "./cache-index.js";
|
|
3
3
|
import type { CacheStorage } from "./storage/interface.js";
|
|
4
|
-
import { DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR } from "./tool-cache-defaults.js";
|
|
5
|
-
export { DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR };
|
|
4
|
+
import { DEFAULT_TOOL_VERSION, DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR } from "./tool-cache-defaults.js";
|
|
5
|
+
export { DEFAULT_TOOL_VERSION, DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR };
|
|
6
6
|
export interface CacheStats {
|
|
7
7
|
count: number;
|
|
8
8
|
/** Omitted if the storage backend does not implement `stat()`. */
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tool-cache.d.ts","sourceRoot":"","sources":["../../src/cache/tool-cache.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAG9C,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,
|
|
1
|
+
{"version":3,"file":"tool-cache.d.ts","sourceRoot":"","sources":["../../src/cache/tool-cache.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAG9C,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EACL,oBAAoB,EACpB,oBAAoB,EACpB,oBAAoB,EACrB,MAAM,0BAA0B,CAAC;AAElC,OAAO,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,CAAC;AAS5E,MAAM,WAAW,UAAU;IACzB,KAAK,EAAE,MAAM,CAAC;IACd,kEAAkE;IAClE,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACjC,4DAA4D;IAC5D,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,4DAA4D;IAC5D,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,mBAAmB;IAClC,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;;;;;;GAOG;AACH,qBAAa,SAAS;IACpB,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,QAAQ,CAAC,KAAK,EAAE,UAAU,CAAC;IAC3B,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;IACvC,OAAO,CAAC,WAAW,CAAiC;gBAExC,IAAI,EAAE;QAAE,OAAO,EAAE,YAAY,CAAC;QAAC,kBAAkB,CAAC,EAAE,MAAM,CAAA;KAAE;IAMxE,sBAAsB,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,mBAAmB;IAmBlF,SAAS,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,OAAO,CAAC,OAAO,CAAC;IAOxE,UAAU,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,GAAG,IAAI,CAAC;IAyBzD;;;;OAIG;IACG,aAAa,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,GAAG,IAAI,CAAC;IAIzD,+DAA+D;IACzD,UAAU,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC;QAAE,SAAS,EAAE,MAAM,CAAC;QAAC,KAAK,CAAC,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI,CAAC;IAKpF;;;OAGG;IACG,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAU3C,QAAQ,CACZ,GAAG,EAAE,MAAM,EACX,UAAU,EAAE,UAAU,EACtB,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,MAAM,EACnB,MAAM,EAAE,MAAM,EACd,SAAS,GAAE,MAAW,GACrB,OAAO,CAAC,IAAI,CAAC;IAMV,UAAU,IAAI,OAAO,CACzB,KAAK,CAAC;QACJ,SAAS,EAAE,MAAM,CAAC;QAClB,OAAO,EAAE,MAAM,CAAC;QAChB,YAAY,EAAE,MAAM,CAAC;QACrB,MAAM,EAAE,MAAM,CAAC;QACf,UAAU,EAAE,MAAM,CAAC;QACnB,SAAS,EAAE,MAAM,CAAC;KACnB,CAAC,CACH;IAIK,aAAa,IAAI,OAAO,CAAC,UAAU,CAAC;IAwB1C,mEAAmE;IAC7D,UAAU,CAAC,YAAY,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;CAmBzD"}
|
package/dist/cache/tool-cache.js
CHANGED
|
@@ -3,8 +3,8 @@ import { ParsedTool } from "@galaxy-tool-util/schema";
|
|
|
3
3
|
import { CacheIndex } from "./cache-index.js";
|
|
4
4
|
import { cacheKey } from "./cache-key.js";
|
|
5
5
|
import { normalizeShortTrsToolId, parseToolshedToolId, toolIdFromTrs } from "./tool-id.js";
|
|
6
|
-
import { DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR } from "./tool-cache-defaults.js";
|
|
7
|
-
export { DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR };
|
|
6
|
+
import { DEFAULT_TOOL_VERSION, DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR, } from "./tool-cache-defaults.js";
|
|
7
|
+
export { DEFAULT_TOOL_VERSION, DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR };
|
|
8
8
|
function envToolshedUrl() {
|
|
9
9
|
if (typeof process !== "undefined" && process.env) {
|
|
10
10
|
return process.env[TOOLSHED_URL_ENV_VAR];
|
|
@@ -43,7 +43,7 @@ export class ToolCache {
|
|
|
43
43
|
return {
|
|
44
44
|
toolshedUrl: this.defaultToolshedUrl,
|
|
45
45
|
trsToolId,
|
|
46
|
-
version: toolVersion ??
|
|
46
|
+
version: toolVersion ?? DEFAULT_TOOL_VERSION,
|
|
47
47
|
readableId: toolIdFromTrs(this.defaultToolshedUrl, trsToolId),
|
|
48
48
|
};
|
|
49
49
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tool-cache.js","sourceRoot":"","sources":["../../src/cache/tool-cache.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,CAAC,MAAM,eAAe,CAAC;AAEnC,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAC1C,OAAO,EAAE,uBAAuB,EAAE,mBAAmB,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAE3F,OAAO,
|
|
1
|
+
{"version":3,"file":"tool-cache.js","sourceRoot":"","sources":["../../src/cache/tool-cache.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,CAAC,MAAM,eAAe,CAAC;AAEnC,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAC1C,OAAO,EAAE,uBAAuB,EAAE,mBAAmB,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAE3F,OAAO,EACL,oBAAoB,EACpB,oBAAoB,EACpB,oBAAoB,GACrB,MAAM,0BAA0B,CAAC;AAElC,OAAO,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,CAAC;AAE5E,SAAS,cAAc;IACrB,IAAI,OAAO,OAAO,KAAK,WAAW,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;QAClD,OAAO,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,CAAC;IAC3C,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAoBD;;;;;;;GAOG;AACH,MAAM,OAAO,SAAS;IACX,kBAAkB,CAAS;IAC3B,KAAK,CAAa;IACV,OAAO,CAAe;IAC/B,WAAW,GAAG,IAAI,GAAG,EAAsB,CAAC;IAEpD,YAAY,IAA4D;QACtE,IAAI,CAAC,kBAAkB,GAAG,IAAI,CAAC,kBAAkB,IAAI,cAAc,EAAE,IAAI,oBAAoB,CAAC;QAC9F,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;QAC5B,IAAI,CAAC,KAAK,GAAG,IAAI,UAAU,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAC5C,CAAC;IAED,sBAAsB,CAAC,MAAc,EAAE,WAA2B;QAChE,MAAM,MAAM,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAC;QAC3C,IAAI,MAAM,KAAK,IAAI,EAAE,CAAC;YACpB,OAAO;gBACL,WAAW,EAAE,MAAM,CAAC,WAAW;gBAC/B,SAAS,EAAE,MAAM,CAAC,SAAS;gBAC3B,OAAO,EAAE,WAAW,IAAI,MAAM,CAAC,WAAW;gBAC1C,UAAU,EAAE,aAAa,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,CAAC;aAChE,CAAC;QACJ,CAAC;QACD,MAAM,SAAS,GAAG,uBAAuB,CAAC,MAAM,CAAC,IAAI,MAAM,CAAC;QAC5D,OAAO;YACL,WAAW,EAAE,IAAI,CAAC,kBAAkB;YACpC,SAAS;YACT,OAAO,EAAE,WAAW,IAAI,oBAAoB;YAC5C,UAAU,EAAE,aAAa,CAAC,IAAI,CAAC,kBAAkB,EAAE,SAAS,CAAC;SAC9D,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,MAAc,EAAE,WAA2B;QACzD,MAAM,MAAM,GAAG,IAAI,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QAChE,IAAI,MAAM,CAAC,OAAO,KAAK,IAAI;YAAE,OAAO,KAAK,CAAC;QAC1C,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;QACjF,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,KAAK,IAAI,CAAC;IAC9E,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,GAAW;QAC1B,IAAI,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;YAC9B,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAE,CAAC;QACpC,CAAC;QACD,IAAI,CAAC;YACH,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YAC1C,IAAI,IAAI,KAAK,IAAI;gBAAE,OAAO,IAAI,CAAC;YAC/B,MAAM,UAAU,GAAG,CAAC,CAAC,iBAAiB,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,CAAC;YACzD,IAAI,CAAC,CAAC,MAAM,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC;gBACjC,MAAM,CAAC,GAAG,IAAuB,CAAC;gBAClC,MAAM,IAAI,CAAC,KAAK,CAAC,GAAG,CAClB,GAAG,EACH,CAAC,CAAC,EAAE,IAAI,UAAU,CAAC,EAAE,IAAI,SAAS,EAClC,UAAU,CAAC,OAAO,IAAI,SAAS,EAC/B,QAAQ,CACT,CAAC;YACJ,CAAC;YACD,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,EAAE,UAAU,CAAC,CAAC;YACtC,OAAO,UAAU,CAAC;QACpB,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,OAAO,CAAC,KAAK,CAAC,8BAA8B,GAAG,KAAK,GAAG,EAAE,CAAC,CAAC;YAC3D,OAAO,IAAI,CAAC;QACd,CAAC;IACH,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,aAAa,CAAC,GAAW;QAC7B,OAAO,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAChC,CAAC;IAED,+DAA+D;IAC/D,KAAK,CAAC,UAAU,CAAC,GAAW;QAC1B,IAAI,OAAO,IAAI,CAAC,OAAO,CAAC,IAAI,KAAK,UAAU;YAAE,OAAO,IAAI,CAAC;QACzD,OAAO,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAChC,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,YAAY,CAAC,GAAW;QAC5B,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QAC1C,MAAM,SAAS,GAAG,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC;QAC9E,MAAM,OAAO,GAAG,OAAO,IAAI,SAAS,CAAC;QACrC,MAAM,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QAC/B,MAAM,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QAC7B,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QAC7B,OAAO,OAAO,CAAC;IACjB,CAAC;IAED,KAAK,CAAC,QAAQ,CACZ,GAAW,EACX,UAAsB,EACtB,MAAc,EACd,WAAmB,EACnB,MAAc,EACd,YAAoB,EAAE;QAEtB,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,EAAE,UAAU,CAAC,CAAC;QACzC,MAAM,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC;QAClE,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,EAAE,UAAU,CAAC,CAAC;IACxC,CAAC;IAED,KAAK,CAAC,UAAU;QAUd,OAAO,IAAI,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC;IAC9B,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC;QAC3C,MAAM,QAAQ,GAA2B,EAAE,CAAC;QAC5C,IAAI,MAA0B,CAAC;QAC/B,IAAI,MAA0B,CAAC;QAC/B,KAAK,MAAM,CAAC,IAAI,OAAO,EAAE,CAAC;YACxB,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC;YACnD,IAAI,MAAM,KAAK,SAAS,IAAI,CAAC,CAAC,SAAS,GAAG,MAAM;gBAAE,MAAM,GAAG,CAAC,CAAC,SAAS,CAAC;YACvE,IAAI,MAAM,KAAK,SAAS,IAAI,CAAC,CAAC,SAAS,GAAG,MAAM;gBAAE,MAAM,GAAG,CAAC,CAAC,SAAS,CAAC;QACzE,CAAC;QACD,MAAM,KAAK,GAAe,EAAE,KAAK,EAAE,OAAO,CAAC,MAAM,EAAE,QAAQ,EAAE,CAAC;QAC9D,IAAI,MAAM,KAAK,SAAS;YAAE,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC;QAChD,IAAI,MAAM,KAAK,SAAS;YAAE,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC;QAChD,IAAI,OAAO,IAAI,CAAC,OAAO,CAAC,IAAI,KAAK,UAAU,EAAE,CAAC;YAC5C,IAAI,UAAU,GAAG,CAAC,CAAC;YACnB,KAAK,MAAM,CAAC,IAAI,OAAO,EAAE,CAAC;gBACxB,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;gBAC/C,IAAI,CAAC,KAAK,IAAI;oBAAE,UAAU,IAAI,CAAC,CAAC,SAAS,CAAC;YAC5C,CAAC;YACD,KAAK,CAAC,UAAU,GAAG,UAAU,CAAC;QAChC,CAAC;QACD,OAAO,KAAK,CAAC;IACf,CAAC;IAED,mEAAmE;IACnE,KAAK,CAAC,UAAU,CAAC,YAAqB;QACpC,IAAI,YAAY,KAAK,SAAS,EAAE,CAAC;YAC/B,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC;YACvC,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;gBACvB,MAAM,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YACjC,CAAC;YACD,MAAM,IAAI,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC;YACzB,IAAI,CAAC,WAAW,CAAC,KAAK,EAAE,CAAC;YACzB,OAAO,IAAI,CAAC,MAAM,CAAC;QACrB,CAAC;QACD,MAAM,MAAM,GAAG,YAAY,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;QAC/C,MAAM,QAAQ,GAAG,CAAC,MAAM,IAAI,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC;QAC1F,KAAK,MAAM,KAAK,IAAI,QAAQ,EAAE,CAAC;YAC7B,MAAM,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;YAC3C,MAAM,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;YACzC,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;QAC3C,CAAC;QACD,OAAO,QAAQ,CAAC,MAAM,CAAC;IACzB,CAAC;CACF"}
|
package/dist/tool-info.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tool-info.d.ts","sourceRoot":"","sources":["../src/tool-info.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AAC3D,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAIlD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,8BAA8B,CAAC;AAEjE,kDAAkD;AAClD,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,UAAU,GAAG,QAAQ,CAAC;IAC5B,GAAG,EAAE,MAAM,CAAC;CACb;AAED,0DAA0D;AAC1D,MAAM,WAAW,eAAe;IAC9B,gGAAgG;IAChG,OAAO,EAAE,YAAY,CAAC;IACtB,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,4FAA4F;IAC5F,OAAO,CAAC,EAAE,UAAU,EAAE,CAAC;IACvB,4EAA4E;IAC5E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,OAAO,KAAK,CAAC;CACxB;AAED;;;GAGG;AACH,qBAAa,eAAe;IAC1B,QAAQ,CAAC,KAAK,EAAE,SAAS,CAAC;IAC1B,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;IACvC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;gBAE3B,IAAI,EAAE,eAAe;IAsB3B,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,OAAO,CAAC,UAAU,GAAG,IAAI,CAAC;
|
|
1
|
+
{"version":3,"file":"tool-info.d.ts","sourceRoot":"","sources":["../src/tool-info.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AAC3D,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAIlD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,8BAA8B,CAAC;AAEjE,kDAAkD;AAClD,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,UAAU,GAAG,QAAQ,CAAC;IAC5B,GAAG,EAAE,MAAM,CAAC;CACb;AAED,0DAA0D;AAC1D,MAAM,WAAW,eAAe;IAC9B,gGAAgG;IAChG,OAAO,EAAE,YAAY,CAAC;IACtB,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,4FAA4F;IAC5F,OAAO,CAAC,EAAE,UAAU,EAAE,CAAC;IACvB,4EAA4E;IAC5E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,OAAO,KAAK,CAAC;CACxB;AAED;;;GAGG;AACH,qBAAa,eAAe;IAC1B,QAAQ,CAAC,KAAK,EAAE,SAAS,CAAC;IAC1B,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;IACvC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;gBAE3B,IAAI,EAAE,eAAe;IAsB3B,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,OAAO,CAAC,UAAU,GAAG,IAAI,CAAC;IA0D1F;;;OAGG;YACW,oBAAoB;IAalC;;;;;;;OAOG;IACG,OAAO,CACX,MAAM,EAAE,MAAM,EACd,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,EAC3B,IAAI,CAAC,EAAE;QAAE,KAAK,CAAC,EAAE,OAAO,CAAA;KAAE,GACzB,OAAO,CAAC;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,OAAO,CAAC;QAAC,aAAa,EAAE,OAAO,CAAA;KAAE,CAAC;IAwBpE,OAAO,CACX,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,UAAU,EACtB,MAAM,GAAE,MAAgB,EACxB,SAAS,GAAE,MAAW,GACrB,OAAO,CAAC,MAAM,CAAC;CAOnB"}
|
package/dist/tool-info.js
CHANGED
|
@@ -37,7 +37,8 @@ export class ToolInfoService {
|
|
|
37
37
|
if (resolvedVersion === null) {
|
|
38
38
|
resolvedVersion = await this.resolveLatestVersion(coords.toolshedUrl, coords.trsToolId);
|
|
39
39
|
if (resolvedVersion === null) {
|
|
40
|
-
|
|
40
|
+
console.debug(`No version available for tool: ${toolId}`);
|
|
41
|
+
return null;
|
|
41
42
|
}
|
|
42
43
|
}
|
|
43
44
|
const key = await cacheKey(coords.toolshedUrl, coords.trsToolId, resolvedVersion);
|
package/dist/tool-info.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tool-info.js","sourceRoot":"","sources":["../src/tool-info.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AAC1E,OAAO,EAAE,uBAAuB,EAAE,MAAM,iBAAiB,CAAC;AAqB1D;;;GAGG;AACH,MAAM,OAAO,eAAe;IACjB,KAAK,CAAY;IACT,OAAO,CAAe;IACtB,OAAO,CAAe;IAEvC,YAAY,IAAqB;QAC/B,IAAI,CAAC,KAAK,GAAG,IAAI,SAAS,CAAC;YACzB,OAAO,EAAE,IAAI,CAAC,OAAO;YACrB,kBAAkB,EAAE,IAAI,CAAC,kBAAkB;SAC5C,CAAC,CAAC;QACH,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,UAAU,CAAC,KAAK,CAAC;QAEhD,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YACjB,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;QAC9B,CAAC;aAAM,CAAC;YACN,IAAI,CAAC,OAAO,GAAG;gBACb;oBACE,IAAI,EAAE,UAAU;oBAChB,GAAG,EAAE,IAAI,CAAC,kBAAkB,IAAI,IAAI,CAAC,KAAK,CAAC,kBAAkB;iBAC9D;aACF,CAAC;YACF,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC;gBACnB,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,EAAE,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC;YAC7D,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,MAAc,EAAE,WAA2B;QAC3D,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QACtE,IAAI,eAAe,GAAG,MAAM,CAAC,OAAO,CAAC;QACrC,IAAI,eAAe,KAAK,IAAI,EAAE,CAAC;YAC7B,eAAe,GAAG,MAAM,IAAI,CAAC,oBAAoB,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC;YACxF,IAAI,eAAe,KAAK,IAAI,EAAE,CAAC;gBAC7B,
|
|
1
|
+
{"version":3,"file":"tool-info.js","sourceRoot":"","sources":["../src/tool-info.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AAC1E,OAAO,EAAE,uBAAuB,EAAE,MAAM,iBAAiB,CAAC;AAqB1D;;;GAGG;AACH,MAAM,OAAO,eAAe;IACjB,KAAK,CAAY;IACT,OAAO,CAAe;IACtB,OAAO,CAAe;IAEvC,YAAY,IAAqB;QAC/B,IAAI,CAAC,KAAK,GAAG,IAAI,SAAS,CAAC;YACzB,OAAO,EAAE,IAAI,CAAC,OAAO;YACrB,kBAAkB,EAAE,IAAI,CAAC,kBAAkB;SAC5C,CAAC,CAAC;QACH,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,UAAU,CAAC,KAAK,CAAC;QAEhD,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YACjB,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;QAC9B,CAAC;aAAM,CAAC;YACN,IAAI,CAAC,OAAO,GAAG;gBACb;oBACE,IAAI,EAAE,UAAU;oBAChB,GAAG,EAAE,IAAI,CAAC,kBAAkB,IAAI,IAAI,CAAC,KAAK,CAAC,kBAAkB;iBAC9D;aACF,CAAC;YACF,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC;gBACnB,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,EAAE,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC;YAC7D,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,MAAc,EAAE,WAA2B;QAC3D,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QACtE,IAAI,eAAe,GAAG,MAAM,CAAC,OAAO,CAAC;QACrC,IAAI,eAAe,KAAK,IAAI,EAAE,CAAC;YAC7B,eAAe,GAAG,MAAM,IAAI,CAAC,oBAAoB,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC;YACxF,IAAI,eAAe,KAAK,IAAI,EAAE,CAAC;gBAC7B,OAAO,CAAC,KAAK,CAAC,kCAAkC,MAAM,EAAE,CAAC,CAAC;gBAC1D,OAAO,IAAI,CAAC;YACd,CAAC;QACH,CAAC;QACD,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,eAAe,CAAC,CAAC;QAElF,iEAAiE;QACjE,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;QAChD,IAAI,MAAM,KAAK,IAAI;YAAE,OAAO,MAAM,CAAC;QAEnC,2BAA2B;QAC3B,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAClC,IAAI,CAAC;gBACH,IAAI,UAAsB,CAAC;gBAC3B,IAAI,WAAmB,CAAC;gBACxB,IAAI,SAAiB,CAAC;gBAEtB,IAAI,MAAM,CAAC,IAAI,KAAK,UAAU,EAAE,CAAC;oBAC/B,UAAU,GAAG,MAAM,iBAAiB,CAClC,MAAM,CAAC,GAAG,EACV,MAAM,CAAC,SAAS,EAChB,eAAe,EACf,IAAI,CAAC,OAAO,CACb,CAAC;oBACF,WAAW,GAAG,KAAK,CAAC;oBACpB,SAAS,GAAG,GAAG,MAAM,CAAC,GAAG,cAAc,MAAM,CAAC,SAAS,aAAa,eAAe,EAAE,CAAC;gBACxF,CAAC;qBAAM,CAAC;oBACN,UAAU,GAAG,MAAM,eAAe,CAAC,MAAM,CAAC,GAAG,EAAE,MAAM,EAAE,eAAe,EAAE,IAAI,CAAC,OAAO,CAAC,CAAC;oBACtF,WAAW,GAAG,QAAQ,CAAC;oBACvB,SAAS,GAAG,GAAG,MAAM,CAAC,GAAG,cAAc,kBAAkB,CAAC,MAAM,CAAC,SAAS,CAAC;gBAC7E,CAAC;gBAED,MAAM,IAAI,CAAC,KAAK,CAAC,QAAQ,CACvB,GAAG,EACH,UAAU,EACV,MAAM,CAAC,UAAU,EACjB,eAAe,EACf,WAAW,EACX,SAAS,CACV,CAAC;gBACF,OAAO,UAAU,CAAC;YACpB,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gBAC7D,OAAO,CAAC,KAAK,CACX,GAAG,MAAM,CAAC,IAAI,kBAAkB,MAAM,CAAC,GAAG,SAAS,MAAM,CAAC,SAAS,KAAK,GAAG,EAAE,CAC9E,CAAC;YACJ,CAAC;QACH,CAAC;QAED,OAAO,IAAI,CAAC;IACd,CAAC;IAED;;;OAGG;IACK,KAAK,CAAC,oBAAoB,CAChC,WAAmB,EACnB,SAAiB;QAEjB,IAAI,CAAC;YACH,OAAO,MAAM,uBAAuB,CAAC,WAAW,EAAE,SAAS,EAAE,IAAI,CAAC,OAAO,CAAC,CAAC;QAC7E,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YAC7D,OAAO,CAAC,KAAK,CAAC,wCAAwC,SAAS,OAAO,WAAW,KAAK,GAAG,EAAE,CAAC,CAAC;YAC7F,OAAO,IAAI,CAAC;QACd,CAAC;IACH,CAAC;IAED;;;;;;;OAOG;IACH,KAAK,CAAC,OAAO,CACX,MAAc,EACd,WAA2B,EAC3B,IAA0B;QAE1B,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,IAAI,IAAI,CAAC,CAAC;QAC9E,IAAI,eAAe,GAAG,MAAM,CAAC,OAAO,CAAC;QACrC,IAAI,aAAa,GAAG,KAAK,CAAC;QAC1B,IAAI,eAAe,KAAK,IAAI,EAAE,CAAC;YAC7B,aAAa,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC;QACtE,CAAC;QACD,IAAI,aAAa,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,CAAC;YAClC,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,eAAgB,CAAC,CAAC;YACnF,OAAO,EAAE,QAAQ,EAAE,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC;QAChE,CAAC;QACD,IAAI,aAAa,IAAI,IAAI,EAAE,KAAK,IAAI,eAAe,KAAK,IAAI,EAAE,CAAC;YAC7D,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,eAAe,CAAC,CAAC;YAClF,MAAM,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC;QACrC,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,MAAM,EAAE,WAAW,IAAI,IAAI,CAAC,CAAC;QACjE,IAAI,IAAI,KAAK,IAAI,EAAE,CAAC;YAClB,MAAM,IAAI,KAAK,CAAC,yBAAyB,MAAM,EAAE,CAAC,CAAC;QACrD,CAAC;QACD,eAAe,GAAG,IAAI,CAAC,OAAO,IAAI,eAAe,IAAI,SAAS,CAAC;QAC/D,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,eAAe,CAAC,CAAC;QAClF,OAAO,EAAE,QAAQ,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC;IACzD,CAAC;IAED,KAAK,CAAC,OAAO,CACX,MAAc,EACd,WAAmB,EACnB,UAAsB,EACtB,SAAiB,OAAO,EACxB,YAAoB,EAAE;QAEtB,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QACtE,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,IAAI,WAAW,CAAC;QAC9C,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QAC1E,MAAM,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,GAAG,EAAE,UAAU,EAAE,MAAM,CAAC,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC;QAC1F,OAAO,GAAG,CAAC;IACb,CAAC;CACF"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@galaxy-tool-util/core",
|
|
3
|
-
"version": "1.
|
|
3
|
+
"version": "1.8.0",
|
|
4
4
|
"description": "Galaxy tool cache, ToolShed client, and ParsedTool models",
|
|
5
5
|
"type": "module",
|
|
6
6
|
"sideEffects": false,
|
|
@@ -37,7 +37,7 @@
|
|
|
37
37
|
"dependencies": {
|
|
38
38
|
"effect": "^3.21.0",
|
|
39
39
|
"yaml": "^2.8.3",
|
|
40
|
-
"@galaxy-tool-util/schema": "1.
|
|
40
|
+
"@galaxy-tool-util/schema": "1.8.0"
|
|
41
41
|
},
|
|
42
42
|
"scripts": {
|
|
43
43
|
"build": "tsc",
|