@galaxy-tool-util/core 0.3.0 → 1.0.0

package/dist/cache/tool-cache.d.ts

@@ -1,4 +1,4 @@
-import { ParsedTool } from "../models/parsed-tool.js";
+import { ParsedTool } from "@galaxy-tool-util/schema";
 import { CacheIndex } from "./cache-index.js";
 import type { CacheStorage } from "./storage/interface.js";
 import { DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR } from "./tool-cache-defaults.js";

package/dist/cache/tool-cache.js

@@ -1,5 +1,5 @@
 import * as S from "effect/Schema";
-import { ParsedTool } from "../models/parsed-tool.js";
+import { ParsedTool } from "@galaxy-tool-util/schema";
 import { CacheIndex } from "./cache-index.js";
 import { cacheKey } from "./cache-key.js";
 import { parseToolshedToolId, toolIdFromTrs } from "./tool-id.js";

package/dist/client/index.d.ts

@@ -1,2 +1,4 @@
 export { fetchFromToolShed, fetchFromGalaxy, ToolFetchError } from "./toolshed.js";
+export { getTRSToolVersions, getLatestTRSToolVersion } from "./trs.js";
+export type { TRSToolVersion } from "./trs.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/client/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/client/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/client/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AACnF,OAAO,EAAE,kBAAkB,EAAE,uBAAuB,EAAE,MAAM,UAAU,CAAC;AACvE,YAAY,EAAE,cAAc,EAAE,MAAM,UAAU,CAAC"}

package/dist/client/index.js

@@ -1,2 +1,3 @@
 export { fetchFromToolShed, fetchFromGalaxy, ToolFetchError } from "./toolshed.js";
+export { getTRSToolVersions, getLatestTRSToolVersion } from "./trs.js";
 //# sourceMappingURL=index.js.map

package/dist/client/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/client/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/client/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AACnF,OAAO,EAAE,kBAAkB,EAAE,uBAAuB,EAAE,MAAM,UAAU,CAAC"}

package/dist/client/toolshed.d.ts

@@ -1,4 +1,4 @@
-import { ParsedTool } from "../models/parsed-tool.js";
+import { ParsedTool } from "@galaxy-tool-util/schema";
 /** Error thrown when fetching a tool from a remote source fails. */
 export declare class ToolFetchError extends Error {
     /** The URL that was requested. */

package/dist/client/toolshed.js

@@ -1,5 +1,5 @@
 import * as S from "effect/Schema";
-import { ParsedTool } from "../models/parsed-tool.js";
+import { ParsedTool } from "@galaxy-tool-util/schema";
 /** Error thrown when fetching a tool from a remote source fails. */
 export class ToolFetchError extends Error {
     url;

package/dist/client/trs.d.ts

@@ -0,0 +1,32 @@
+/**
+ * Subset of a TRS `ToolVersion` object as returned by Tool Shed's
+ * `/api/ga4gh/trs/v2/tools/{id}/versions` endpoint. Only the fields we
+ * actually consume downstream are typed strictly; the rest are kept as
+ * unknown so unexpected nulls or new additions don't cause decode failures.
+ */
+export interface TRSToolVersion {
+    /** TRS version id (e.g. `"0.74+galaxy0"`). */
+    id: string;
+    /** Display name, often `null` on Tool Shed. */
+    name: string | null;
+    /** Repository URL. */
+    url: string;
+    /** Declared descriptor types (e.g. `["GALAXY"]`). */
+    descriptor_type: string[];
+    /** Author list. */
+    author: string[];
+    [extra: string]: unknown;
+}
+/**
+ * Fetch the list of TRS tool versions for a given `trsToolId`
+ * (`<owner>~<repo>~<toolId>` form). Returns the raw server order —
+ * Tool Shed typically returns newest first.
+ */
+export declare function getTRSToolVersions(toolshedUrl: string, trsToolId: string, fetcher?: typeof fetch): Promise<TRSToolVersion[]>;
+/**
+ * Fetch the latest TRS tool version id. Returns `null` if the tool has no
+ * published versions. Tool Shed returns versions newest-first; we take the
+ * first entry.
+ */
+export declare function getLatestTRSToolVersion(toolshedUrl: string, trsToolId: string, fetcher?: typeof fetch): Promise<string | null>;
+//# sourceMappingURL=trs.d.ts.map

package/dist/client/trs.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"trs.d.ts","sourceRoot":"","sources":["../../src/client/trs.ts"],"names":[],"mappings":"AAIA;;;;;GAKG;AACH,MAAM,WAAW,cAAc;IAC7B,8CAA8C;IAC9C,EAAE,EAAE,MAAM,CAAC;IACX,+CAA+C;IAC/C,IAAI,EAAE,MAAM,GAAG,IAAI,CAAC;IACpB,sBAAsB;IACtB,GAAG,EAAE,MAAM,CAAC;IACZ,qDAAqD;IACrD,eAAe,EAAE,MAAM,EAAE,CAAC;IAC1B,mBAAmB;IACnB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;CAC1B;AA6BD;;;;GAIG;AACH,wBAAsB,kBAAkB,CACtC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,EACjB,OAAO,GAAE,OAAO,KAAwB,GACvC,OAAO,CAAC,cAAc,EAAE,CAAC,CAyC3B;AAED;;;;GAIG;AACH,wBAAsB,uBAAuB,CAC3C,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,EACjB,OAAO,GAAE,OAAO,KAAwB,GACvC,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAGxB"}

package/dist/client/trs.js

@@ -0,0 +1,66 @@
+import { ToolFetchError } from "./toolshed.js";
+const REQUEST_TIMEOUT_MS = 30_000;
+function coerceTRSVersion(value, index) {
+    if (typeof value !== "object" || value === null || Array.isArray(value)) {
+        throw new Error(`TRS versions response: entries[${index}] must be an object`);
+    }
+    const v = value;
+    if (typeof v.id !== "string") {
+        throw new Error(`TRS versions response: entries[${index}].id must be a string`);
+    }
+    if (v.name !== null && typeof v.name !== "string") {
+        throw new Error(`TRS versions response: entries[${index}].name must be a string or null`);
+    }
+    if (typeof v.url !== "string") {
+        throw new Error(`TRS versions response: entries[${index}].url must be a string`);
+    }
+    if (!Array.isArray(v.descriptor_type) || v.descriptor_type.some((x) => typeof x !== "string")) {
+        throw new Error(`TRS versions response: entries[${index}].descriptor_type must be a string array`);
+    }
+    if (!Array.isArray(v.author) || v.author.some((x) => typeof x !== "string")) {
+        throw new Error(`TRS versions response: entries[${index}].author must be a string array`);
+    }
+    return v;
+}
+/**
+ * Fetch the list of TRS tool versions for a given `trsToolId`
+ * (`<owner>~<repo>~<toolId>` form). Returns the raw server order —
+ * Tool Shed typically returns newest first.
+ */
+export async function getTRSToolVersions(toolshedUrl, trsToolId, fetcher = globalThis.fetch) {
+    const url = `${toolshedUrl}/api/ga4gh/trs/v2/tools/${encodeURIComponent(trsToolId)}/versions`;
+    let response;
+    try {
+        response = await fetcher(url, {
+            headers: { Accept: "application/json" },
+            signal: AbortSignal.timeout(REQUEST_TIMEOUT_MS),
+        });
+    }
+    catch (err) {
+        throw new ToolFetchError(`TRS versions request to ${url} failed: ${err.message}`, url);
+    }
+    if (!response.ok) {
+        const body = await response.text().catch(() => "");
+        throw new ToolFetchError(`TRS versions request to ${url} failed: ${response.status} ${body.slice(0, 200)}`, url, response.status);
+    }
+    const json = await response.json();
+    if (!Array.isArray(json)) {
+        throw new ToolFetchError(`TRS versions response from ${url} was not an array`, url, response.status);
+    }
+    try {
+        return json.map(coerceTRSVersion);
+    }
+    catch (err) {
+        throw new ToolFetchError(`TRS versions response from ${url} was malformed: ${err.message}`, url, response.status);
+    }
+}
+/**
+ * Fetch the latest TRS tool version id. Returns `null` if the tool has no
+ * published versions. Tool Shed returns versions newest-first; we take the
+ * first entry.
+ */
+export async function getLatestTRSToolVersion(toolshedUrl, trsToolId, fetcher = globalThis.fetch) {
+    const versions = await getTRSToolVersions(toolshedUrl, trsToolId, fetcher);
+    return versions.length > 0 ? versions[0].id : null;
+}
+//# sourceMappingURL=trs.js.map

package/dist/client/trs.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"trs.js","sourceRoot":"","sources":["../../src/client/trs.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAE/C,MAAM,kBAAkB,GAAG,MAAM,CAAC;AAsBlC,SAAS,gBAAgB,CAAC,KAAc,EAAE,KAAa;IACrD,IAAI,OAAO,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,IAAI,IAAI,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;QACxE,MAAM,IAAI,KAAK,CAAC,kCAAkC,KAAK,qBAAqB,CAAC,CAAC;IAChF,CAAC;IACD,MAAM,CAAC,GAAG,KAAgC,CAAC;IAE3C,IAAI,OAAO,CAAC,CAAC,EAAE,KAAK,QAAQ,EAAE,CAAC;QAC7B,MAAM,IAAI,KAAK,CAAC,kCAAkC,KAAK,uBAAuB,CAAC,CAAC;IAClF,CAAC;IACD,IAAI,CAAC,CAAC,IAAI,KAAK,IAAI,IAAI,OAAO,CAAC,CAAC,IAAI,KAAK,QAAQ,EAAE,CAAC;QAClD,MAAM,IAAI,KAAK,CAAC,kCAAkC,KAAK,iCAAiC,CAAC,CAAC;IAC5F,CAAC;IACD,IAAI,OAAO,CAAC,CAAC,GAAG,KAAK,QAAQ,EAAE,CAAC;QAC9B,MAAM,IAAI,KAAK,CAAC,kCAAkC,KAAK,wBAAwB,CAAC,CAAC;IACnF,CAAC;IACD,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,CAAC,IAAI,CAAC,CAAC,eAAe,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,QAAQ,CAAC,EAAE,CAAC;QAC9F,MAAM,IAAI,KAAK,CACb,kCAAkC,KAAK,0CAA0C,CAClF,CAAC;IACJ,CAAC;IACD,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,QAAQ,CAAC,EAAE,CAAC;QAC5E,MAAM,IAAI,KAAK,CAAC,kCAAkC,KAAK,iCAAiC,CAAC,CAAC;IAC5F,CAAC;IAED,OAAO,CAA8B,CAAC;AACxC,CAAC;AAED;;;;GAIG;AACH,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,WAAmB,EACnB,SAAiB,EACjB,UAAwB,UAAU,CAAC,KAAK;IAExC,MAAM,GAAG,GAAG,GAAG,WAAW,2BAA2B,kBAAkB,CAAC,SAAS,CAAC,WAAW,CAAC;IAC9F,IAAI,QAAkB,CAAC;IACvB,IAAI,CAAC;QACH,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,EAAE;YAC5B,OAAO,EAAE,EAAE,MAAM,EAAE,kBAAkB,EAAE;YACvC,MAAM,EAAE,WAAW,CAAC,OAAO,CAAC,kBAAkB,CAAC;SAChD,CAAC,CAAC;IACL,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,MAAM,IAAI,cAAc,CACtB,2BAA2B,GAAG,YAAa,GAAa,CAAC,OAAO,EAAE,EAClE,GAAG,CACJ,CAAC;IACJ,CAAC;IAED,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC;QACnD,MAAM,IAAI,cAAc,CACtB,2BAA2B,GAAG,YAAY,QAAQ,CAAC,MAAM,IAAI,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,EACjF,GAAG,EACH,QAAQ,CAAC,MAAM,CAChB,CAAC;IACJ,CAAC;IAED,MAAM,IAAI,GAAY,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;IAC5C,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;QACzB,MAAM,IAAI,cAAc,CACtB,8BAA8B,GAAG,mBAAmB,EACpD,GAAG,EACH,QAAQ,CAAC,MAAM,CAChB,CAAC;IACJ,CAAC;IACD,IAAI,CAAC;QACH,OAAO,IAAI,CAAC,GAAG,CAAC,gBAAgB,CAAC,CAAC;IACpC,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,MAAM,IAAI,cAAc,CACtB,8BAA8B,GAAG,mBAAoB,GAAa,CAAC,OAAO,EAAE,EAC5E,GAAG,EACH,QAAQ,CAAC,MAAM,CAChB,CAAC;IACJ,CAAC;AACH,CAAC;AAED;;;;GAIG;AACH,MAAM,CAAC,KAAK,UAAU,uBAAuB,CAC3C,WAAmB,EACnB,SAAiB,EACjB,UAAwB,UAAU,CAAC,KAAK;IAExC,MAAM,QAAQ,GAAG,MAAM,kBAAkB,CAAC,WAAW,EAAE,SAAS,EAAE,OAAO,CAAC,CAAC;IAC3E,OAAO,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;AACrD,CAAC"}

package/dist/index.d.ts

@@ -5,8 +5,6 @@
  * Node built-ins (filesystem cache storage, YAML config loading) live under
  * `@galaxy-tool-util/core/node`.
  */
-/** Effect Schema for parsed tool metadata (id, version, name, inputs, outputs, etc.). */
-export { ParsedTool, HelpContent, XrefDict, Citation } from "./models/parsed-tool.js";
 export { 
 /** Parse a full ToolShed tool ID into ToolCoordinates (toolshedUrl, trsToolId, version). */
 parseToolshedToolId, 
@@ -23,6 +21,9 @@ export type { ToolCoordinates, CacheIndexEntry, CacheIndexData, CacheStorage, Re
 export { IndexedDBCacheStorage } from "./cache/index.js";
 /** Fetch parsed tool metadata from a ToolShed instance via TRS API. */
 export { fetchFromToolShed, fetchFromGalaxy, ToolFetchError } from "./client/index.js";
+/** Query TRS for the set of versions published for a tool. */
+export { getTRSToolVersions, getLatestTRSToolVersion } from "./client/index.js";
+export type { TRSToolVersion } from "./client/index.js";
 /** High-level service: fetch tools from multiple sources with automatic caching. */
 export { ToolInfoService } from "./tool-info.js";
 export type { ToolInfoOptions, ToolSource } from "./tool-info.js";

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,yFAAyF;AACzF,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AACtF,OAAO;AACL,4FAA4F;AAC5F,mBAAmB;AACnB,oEAAoE;AACpE,aAAa;AACb,sFAAsF;AACtF,QAAQ;AACR,iFAAiF;AACjF,UAAU;AACV,mEAAmE;AACnE,SAAS,EACT,oBAAoB,EACpB,oBAAoB,GACrB,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EACV,eAAe,EACf,eAAe,EACf,cAAc,EACd,YAAY,EACZ,mBAAmB,GACpB,MAAM,kBAAkB,CAAC;AAC1B,sEAAsE;AACtE,OAAO,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AACzD,uEAAuE;AACvE,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AACvF,oFAAoF;AACpF,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AACjD,YAAY,EAAE,eAAe,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAClE,qEAAqE;AACrE,OAAO,EACL,kBAAkB,EAClB,gBAAgB,EAChB,eAAe,EACf,yBAAyB,GAC1B,MAAM,aAAa,CAAC;AACrB,YAAY,EAAE,qBAAqB,EAAE,MAAM,aAAa,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO;AACL,4FAA4F;AAC5F,mBAAmB;AACnB,oEAAoE;AACpE,aAAa;AACb,sFAAsF;AACtF,QAAQ;AACR,iFAAiF;AACjF,UAAU;AACV,mEAAmE;AACnE,SAAS,EACT,oBAAoB,EACpB,oBAAoB,GACrB,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EACV,eAAe,EACf,eAAe,EACf,cAAc,EACd,YAAY,EACZ,mBAAmB,GACpB,MAAM,kBAAkB,CAAC;AAC1B,sEAAsE;AACtE,OAAO,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AACzD,uEAAuE;AACvE,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AACvF,8DAA8D;AAC9D,OAAO,EAAE,kBAAkB,EAAE,uBAAuB,EAAE,MAAM,mBAAmB,CAAC;AAChF,YAAY,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AACxD,oFAAoF;AACpF,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AACjD,YAAY,EAAE,eAAe,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAClE,qEAAqE;AACrE,OAAO,EACL,kBAAkB,EAClB,gBAAgB,EAChB,eAAe,EACf,yBAAyB,GAC1B,MAAM,aAAa,CAAC;AACrB,YAAY,EAAE,qBAAqB,EAAE,MAAM,aAAa,CAAC"}

package/dist/index.js

@@ -5,8 +5,6 @@
  * Node built-ins (filesystem cache storage, YAML config loading) live under
  * `@galaxy-tool-util/core/node`.
  */
-/** Effect Schema for parsed tool metadata (id, version, name, inputs, outputs, etc.). */
-export { ParsedTool, HelpContent, XrefDict, Citation } from "./models/parsed-tool.js";
 export { 
 /** Parse a full ToolShed tool ID into ToolCoordinates (toolshedUrl, trsToolId, version). */
 parseToolshedToolId, 
@@ -22,6 +20,8 @@ ToolCache, DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR, } from "./cache/index.js"
 export { IndexedDBCacheStorage } from "./cache/index.js";
 /** Fetch parsed tool metadata from a ToolShed instance via TRS API. */
 export { fetchFromToolShed, fetchFromGalaxy, ToolFetchError } from "./client/index.js";
+/** Query TRS for the set of versions published for a tool. */
+export { getTRSToolVersions, getLatestTRSToolVersion } from "./client/index.js";
 /** High-level service: fetch tools from multiple sources with automatic caching. */
 export { ToolInfoService } from "./tool-info.js";
 /** Shared YAML config schema for tool sources and cache settings. */

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,yFAAyF;AACzF,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AACtF,OAAO;AACL,4FAA4F;AAC5F,mBAAmB;AACnB,oEAAoE;AACpE,aAAa;AACb,sFAAsF;AACtF,QAAQ;AACR,iFAAiF;AACjF,UAAU;AACV,mEAAmE;AACnE,SAAS,EACT,oBAAoB,EACpB,oBAAoB,GACrB,MAAM,kBAAkB,CAAC;AAQ1B,sEAAsE;AACtE,OAAO,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AACzD,uEAAuE;AACvE,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AACvF,oFAAoF;AACpF,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAEjD,qEAAqE;AACrE,OAAO,EACL,kBAAkB,EAClB,gBAAgB,EAChB,eAAe,EACf,yBAAyB,GAC1B,MAAM,aAAa,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO;AACL,4FAA4F;AAC5F,mBAAmB;AACnB,oEAAoE;AACpE,aAAa;AACb,sFAAsF;AACtF,QAAQ;AACR,iFAAiF;AACjF,UAAU;AACV,mEAAmE;AACnE,SAAS,EACT,oBAAoB,EACpB,oBAAoB,GACrB,MAAM,kBAAkB,CAAC;AAQ1B,sEAAsE;AACtE,OAAO,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AACzD,uEAAuE;AACvE,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AACvF,8DAA8D;AAC9D,OAAO,EAAE,kBAAkB,EAAE,uBAAuB,EAAE,MAAM,mBAAmB,CAAC;AAEhF,oFAAoF;AACpF,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAEjD,qEAAqE;AACrE,OAAO,EACL,kBAAkB,EAClB,gBAAgB,EAChB,eAAe,EACf,yBAAyB,GAC1B,MAAM,aAAa,CAAC"}

package/dist/tool-info.d.ts

@@ -1,4 +1,4 @@
-import type { ParsedTool } from "./models/parsed-tool.js";
+import type { ParsedTool } from "@galaxy-tool-util/schema";
 import { ToolCache } from "./cache/tool-cache.js";
 import type { CacheStorage } from "./cache/storage/interface.js";
 /** A remote source for fetching tool metadata. */
@@ -27,6 +27,11 @@ export declare class ToolInfoService {
     private readonly fetcher;
     constructor(opts: ToolInfoOptions);
     getToolInfo(toolId: string, toolVersion?: string | null): Promise<ParsedTool | null>;
+    /**
+     * Resolve the latest TRS version for a tool on a Tool Shed. Returns `null`
+     * if the tool is unknown to the shed or has no published versions.
+     */
+    private resolveLatestVersion;
     addTool(toolId: string, toolVersion: string, parsedTool: ParsedTool, source?: string, sourceUrl?: string): Promise<string>;
 }
 //# sourceMappingURL=tool-info.d.ts.map

package/dist/tool-info.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"tool-info.d.ts","sourceRoot":"","sources":["../src/tool-info.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,yBAAyB,CAAC;AAC1D,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAGlD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,8BAA8B,CAAC;AAEjE,kDAAkD;AAClD,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,UAAU,GAAG,QAAQ,CAAC;IAC5B,GAAG,EAAE,MAAM,CAAC;CACb;AAED,0DAA0D;AAC1D,MAAM,WAAW,eAAe;IAC9B,gGAAgG;IAChG,OAAO,EAAE,YAAY,CAAC;IACtB,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,4FAA4F;IAC5F,OAAO,CAAC,EAAE,UAAU,EAAE,CAAC;IACvB,4EAA4E;IAC5E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,OAAO,KAAK,CAAC;CACxB;AAED;;;GAGG;AACH,qBAAa,eAAe;IAC1B,QAAQ,CAAC,KAAK,EAAE,SAAS,CAAC;IAC1B,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;IACvC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;gBAE3B,IAAI,EAAE,eAAe;IAsB3B,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,OAAO,CAAC,UAAU,GAAG,IAAI,CAAC;IAqDpF,OAAO,CACX,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,UAAU,EACtB,MAAM,GAAE,MAAgB,EACxB,SAAS,GAAE,MAAW,GACrB,OAAO,CAAC,MAAM,CAAC;CAOnB"}
+{"version":3,"file":"tool-info.d.ts","sourceRoot":"","sources":["../src/tool-info.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AAC3D,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAIlD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,8BAA8B,CAAC;AAEjE,kDAAkD;AAClD,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,UAAU,GAAG,QAAQ,CAAC;IAC5B,GAAG,EAAE,MAAM,CAAC;CACb;AAED,0DAA0D;AAC1D,MAAM,WAAW,eAAe;IAC9B,gGAAgG;IAChG,OAAO,EAAE,YAAY,CAAC;IACtB,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,4FAA4F;IAC5F,OAAO,CAAC,EAAE,UAAU,EAAE,CAAC;IACvB,4EAA4E;IAC5E,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,OAAO,KAAK,CAAC;CACxB;AAED;;;GAGG;AACH,qBAAa,eAAe;IAC1B,QAAQ,CAAC,KAAK,EAAE,SAAS,CAAC;IAC1B,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;IACvC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;gBAE3B,IAAI,EAAE,eAAe;IAsB3B,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,OAAO,CAAC,UAAU,GAAG,IAAI,CAAC;IAyD1F;;;OAGG;YACW,oBAAoB;IAa5B,OAAO,CACX,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,UAAU,EACtB,MAAM,GAAE,MAAgB,EACxB,SAAS,GAAE,MAAW,GACrB,OAAO,CAAC,MAAM,CAAC;CAOnB"}

package/dist/tool-info.js

@@ -1,6 +1,7 @@
 import { ToolCache } from "./cache/tool-cache.js";
 import { cacheKey } from "./cache/cache-key.js";
 import { fetchFromToolShed, fetchFromGalaxy } from "./client/toolshed.js";
+import { getLatestTRSToolVersion } from "./client/trs.js";
 /**
  * High-level service for fetching Galaxy tool metadata with automatic caching.
  * Tries configured sources in order and caches on first successful fetch.
@@ -32,10 +33,14 @@ export class ToolInfoService {
     }
     async getToolInfo(toolId, toolVersion) {
         const coords = this.cache.resolveToolCoordinates(toolId, toolVersion);
-        if (coords.version === null) {
-            throw new Error(`No version available for tool: ${toolId}`);
+        let resolvedVersion = coords.version;
+        if (resolvedVersion === null) {
+            resolvedVersion = await this.resolveLatestVersion(coords.toolshedUrl, coords.trsToolId);
+            if (resolvedVersion === null) {
+                throw new Error(`No version available for tool: ${toolId}`);
+            }
         }
-        const key = await cacheKey(coords.toolshedUrl, coords.trsToolId, coords.version);
+        const key = await cacheKey(coords.toolshedUrl, coords.trsToolId, resolvedVersion);
         // Check storage cache (ToolCache checks memory first internally)
         const cached = await this.cache.loadCached(key);
         if (cached !== null)
@@ -47,16 +52,16 @@ export class ToolInfoService {
                 let sourceLabel;
                 let sourceUrl;
                 if (source.type === "toolshed") {
-                    parsedTool = await fetchFromToolShed(source.url, coords.trsToolId, coords.version, this.fetcher);
+                    parsedTool = await fetchFromToolShed(source.url, coords.trsToolId, resolvedVersion, this.fetcher);
                     sourceLabel = "api";
-                    sourceUrl = `${source.url}/api/tools/${coords.trsToolId}/versions/${coords.version}`;
+                    sourceUrl = `${source.url}/api/tools/${coords.trsToolId}/versions/${resolvedVersion}`;
                 }
                 else {
-                    parsedTool = await fetchFromGalaxy(source.url, toolId, toolVersion, this.fetcher);
+                    parsedTool = await fetchFromGalaxy(source.url, toolId, resolvedVersion, this.fetcher);
                     sourceLabel = "galaxy";
                     sourceUrl = `${source.url}/api/tools/${encodeURIComponent(toolId)}/parsed`;
                 }
-                await this.cache.saveTool(key, parsedTool, coords.readableId, coords.version, sourceLabel, sourceUrl);
+                await this.cache.saveTool(key, parsedTool, coords.readableId, resolvedVersion, sourceLabel, sourceUrl);
                 return parsedTool;
             }
             catch (err) {
@@ -66,6 +71,20 @@ export class ToolInfoService {
         }
         return null;
     }
+    /**
+     * Resolve the latest TRS version for a tool on a Tool Shed. Returns `null`
+     * if the tool is unknown to the shed or has no published versions.
+     */
+    async resolveLatestVersion(toolshedUrl, trsToolId) {
+        try {
+            return await getLatestTRSToolVersion(toolshedUrl, trsToolId, this.fetcher);
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            console.debug(`TRS latest-version lookup failed for ${trsToolId} on ${toolshedUrl}: ${msg}`);
+            return null;
+        }
+    }
     async addTool(toolId, toolVersion, parsedTool, source = "local", sourceUrl = "") {
         const coords = this.cache.resolveToolCoordinates(toolId, toolVersion);
         const version = coords.version ?? toolVersion;

package/dist/tool-info.js.map

@@ -1 +1 @@
-{"version":3,"file":"tool-info.js","sourceRoot":"","sources":["../src/tool-info.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AAqB1E;;;GAGG;AACH,MAAM,OAAO,eAAe;IACjB,KAAK,CAAY;IACT,OAAO,CAAe;IACtB,OAAO,CAAe;IAEvC,YAAY,IAAqB;QAC/B,IAAI,CAAC,KAAK,GAAG,IAAI,SAAS,CAAC;YACzB,OAAO,EAAE,IAAI,CAAC,OAAO;YACrB,kBAAkB,EAAE,IAAI,CAAC,kBAAkB;SAC5C,CAAC,CAAC;QACH,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,UAAU,CAAC,KAAK,CAAC;QAEhD,IAAI,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC5C,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;QAC9B,CAAC;aAAM,CAAC;YACN,IAAI,CAAC,OAAO,GAAG;gBACb;oBACE,IAAI,EAAE,UAAU;oBAChB,GAAG,EAAE,IAAI,CAAC,kBAAkB,IAAI,IAAI,CAAC,KAAK,CAAC,kBAAkB;iBAC9D;aACF,CAAC;YACF,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC;gBACnB,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,EAAE,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC;YAC7D,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,MAAc,EAAE,WAA2B;QAC3D,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QACtE,IAAI,MAAM,CAAC,OAAO,KAAK,IAAI,EAAE,CAAC;YAC5B,MAAM,IAAI,KAAK,CAAC,kCAAkC,MAAM,EAAE,CAAC,CAAC;QAC9D,CAAC;QACD,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;QAEjF,iEAAiE;QACjE,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;QAChD,IAAI,MAAM,KAAK,IAAI;YAAE,OAAO,MAAM,CAAC;QAEnC,2BAA2B;QAC3B,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAClC,IAAI,CAAC;gBACH,IAAI,UAAsB,CAAC;gBAC3B,IAAI,WAAmB,CAAC;gBACxB,IAAI,SAAiB,CAAC;gBAEtB,IAAI,MAAM,CAAC,IAAI,KAAK,UAAU,EAAE,CAAC;oBAC/B,UAAU,GAAG,MAAM,iBAAiB,CAClC,MAAM,CAAC,GAAG,EACV,MAAM,CAAC,SAAS,EAChB,MAAM,CAAC,OAAO,EACd,IAAI,CAAC,OAAO,CACb,CAAC;oBACF,WAAW,GAAG,KAAK,CAAC;oBACpB,SAAS,GAAG,GAAG,MAAM,CAAC,GAAG,cAAc,MAAM,CAAC,SAAS,aAAa,MAAM,CAAC,OAAO,EAAE,CAAC;gBACvF,CAAC;qBAAM,CAAC;oBACN,UAAU,GAAG,MAAM,eAAe,CAAC,MAAM,CAAC,GAAG,EAAE,MAAM,EAAE,WAAW,EAAE,IAAI,CAAC,OAAO,CAAC,CAAC;oBAClF,WAAW,GAAG,QAAQ,CAAC;oBACvB,SAAS,GAAG,GAAG,MAAM,CAAC,GAAG,cAAc,kBAAkB,CAAC,MAAM,CAAC,SAAS,CAAC;gBAC7E,CAAC;gBAED,MAAM,IAAI,CAAC,KAAK,CAAC,QAAQ,CACvB,GAAG,EACH,UAAU,EACV,MAAM,CAAC,UAAU,EACjB,MAAM,CAAC,OAAO,EACd,WAAW,EACX,SAAS,CACV,CAAC;gBACF,OAAO,UAAU,CAAC;YACpB,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gBAC7D,OAAO,CAAC,KAAK,CACX,GAAG,MAAM,CAAC,IAAI,kBAAkB,MAAM,CAAC,GAAG,SAAS,MAAM,CAAC,SAAS,KAAK,GAAG,EAAE,CAC9E,CAAC;YACJ,CAAC;QACH,CAAC;QAED,OAAO,IAAI,CAAC;IACd,CAAC;IAED,KAAK,CAAC,OAAO,CACX,MAAc,EACd,WAAmB,EACnB,UAAsB,EACtB,SAAiB,OAAO,EACxB,YAAoB,EAAE;QAEtB,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QACtE,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,IAAI,WAAW,CAAC;QAC9C,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QAC1E,MAAM,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,GAAG,EAAE,UAAU,EAAE,MAAM,CAAC,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC;QAC1F,OAAO,GAAG,CAAC;IACb,CAAC;CACF"}
+{"version":3,"file":"tool-info.js","sourceRoot":"","sources":["../src/tool-info.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AAC1E,OAAO,EAAE,uBAAuB,EAAE,MAAM,iBAAiB,CAAC;AAqB1D;;;GAGG;AACH,MAAM,OAAO,eAAe;IACjB,KAAK,CAAY;IACT,OAAO,CAAe;IACtB,OAAO,CAAe;IAEvC,YAAY,IAAqB;QAC/B,IAAI,CAAC,KAAK,GAAG,IAAI,SAAS,CAAC;YACzB,OAAO,EAAE,IAAI,CAAC,OAAO;YACrB,kBAAkB,EAAE,IAAI,CAAC,kBAAkB;SAC5C,CAAC,CAAC;QACH,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,IAAI,UAAU,CAAC,KAAK,CAAC;QAEhD,IAAI,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC5C,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;QAC9B,CAAC;aAAM,CAAC;YACN,IAAI,CAAC,OAAO,GAAG;gBACb;oBACE,IAAI,EAAE,UAAU;oBAChB,GAAG,EAAE,IAAI,CAAC,kBAAkB,IAAI,IAAI,CAAC,KAAK,CAAC,kBAAkB;iBAC9D;aACF,CAAC;YACF,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC;gBACnB,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,EAAE,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC;YAC7D,CAAC;QACH,CAAC;IACH,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,MAAc,EAAE,WAA2B;QAC3D,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QACtE,IAAI,eAAe,GAAG,MAAM,CAAC,OAAO,CAAC;QACrC,IAAI,eAAe,KAAK,IAAI,EAAE,CAAC;YAC7B,eAAe,GAAG,MAAM,IAAI,CAAC,oBAAoB,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC;YACxF,IAAI,eAAe,KAAK,IAAI,EAAE,CAAC;gBAC7B,MAAM,IAAI,KAAK,CAAC,kCAAkC,MAAM,EAAE,CAAC,CAAC;YAC9D,CAAC;QACH,CAAC;QACD,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,eAAe,CAAC,CAAC;QAElF,iEAAiE;QACjE,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;QAChD,IAAI,MAAM,KAAK,IAAI;YAAE,OAAO,MAAM,CAAC;QAEnC,2BAA2B;QAC3B,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAClC,IAAI,CAAC;gBACH,IAAI,UAAsB,CAAC;gBAC3B,IAAI,WAAmB,CAAC;gBACxB,IAAI,SAAiB,CAAC;gBAEtB,IAAI,MAAM,CAAC,IAAI,KAAK,UAAU,EAAE,CAAC;oBAC/B,UAAU,GAAG,MAAM,iBAAiB,CAClC,MAAM,CAAC,GAAG,EACV,MAAM,CAAC,SAAS,EAChB,eAAe,EACf,IAAI,CAAC,OAAO,CACb,CAAC;oBACF,WAAW,GAAG,KAAK,CAAC;oBACpB,SAAS,GAAG,GAAG,MAAM,CAAC,GAAG,cAAc,MAAM,CAAC,SAAS,aAAa,eAAe,EAAE,CAAC;gBACxF,CAAC;qBAAM,CAAC;oBACN,UAAU,GAAG,MAAM,eAAe,CAAC,MAAM,CAAC,GAAG,EAAE,MAAM,EAAE,eAAe,EAAE,IAAI,CAAC,OAAO,CAAC,CAAC;oBACtF,WAAW,GAAG,QAAQ,CAAC;oBACvB,SAAS,GAAG,GAAG,MAAM,CAAC,GAAG,cAAc,kBAAkB,CAAC,MAAM,CAAC,SAAS,CAAC;gBAC7E,CAAC;gBAED,MAAM,IAAI,CAAC,KAAK,CAAC,QAAQ,CACvB,GAAG,EACH,UAAU,EACV,MAAM,CAAC,UAAU,EACjB,eAAe,EACf,WAAW,EACX,SAAS,CACV,CAAC;gBACF,OAAO,UAAU,CAAC;YACpB,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gBAC7D,OAAO,CAAC,KAAK,CACX,GAAG,MAAM,CAAC,IAAI,kBAAkB,MAAM,CAAC,GAAG,SAAS,MAAM,CAAC,SAAS,KAAK,GAAG,EAAE,CAC9E,CAAC;YACJ,CAAC;QACH,CAAC;QAED,OAAO,IAAI,CAAC;IACd,CAAC;IAED;;;OAGG;IACK,KAAK,CAAC,oBAAoB,CAChC,WAAmB,EACnB,SAAiB;QAEjB,IAAI,CAAC;YACH,OAAO,MAAM,uBAAuB,CAAC,WAAW,EAAE,SAAS,EAAE,IAAI,CAAC,OAAO,CAAC,CAAC;QAC7E,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,MAAM,GAAG,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YAC7D,OAAO,CAAC,KAAK,CAAC,wCAAwC,SAAS,OAAO,WAAW,KAAK,GAAG,EAAE,CAAC,CAAC;YAC7F,OAAO,IAAI,CAAC;QACd,CAAC;IACH,CAAC;IAED,KAAK,CAAC,OAAO,CACX,MAAc,EACd,WAAmB,EACnB,UAAsB,EACtB,SAAiB,OAAO,EACxB,YAAoB,EAAE;QAEtB,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QACtE,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,IAAI,WAAW,CAAC;QAC9C,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;QAC1E,MAAM,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,GAAG,EAAE,UAAU,EAAE,MAAM,CAAC,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC;QAC1F,OAAO,GAAG,CAAC;IACb,CAAC;CACF"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@galaxy-tool-util/core",
-  "version": "0.3.0",
+  "version": "1.0.0",
   "description": "Galaxy tool cache, ToolShed client, and ParsedTool models",
   "type": "module",
   "sideEffects": false,
@@ -36,7 +36,8 @@
   },
   "dependencies": {
     "effect": "^3.21.0",
-    "yaml": "^2.8.3"
+    "yaml": "^2.8.3",
+    "@galaxy-tool-util/schema": "1.0.0"
   },
   "scripts": {
     "build": "tsc",

package/dist/models/parsed-tool.d.ts

@@ -1,46 +0,0 @@
-import * as S from "effect/Schema";
-/** Tool help content with format (rst, markdown, etc.) and rendered content. */
-export declare const HelpContent: S.Struct<{
-    format: typeof S.String;
-    content: typeof S.String;
-}>;
-/** External reference (e.g. bio.tools ID, bioconductor package). */
-export declare const XrefDict: S.Struct<{
-    value: typeof S.String;
-    type: typeof S.String;
-}>;
-/** Tool citation entry (bibtex, doi, etc.). */
-export declare const Citation: S.Struct<{
-    type: typeof S.String;
-    content: typeof S.String;
-}>;
-/**
- * Effect Schema for parsed Galaxy tool metadata as returned by the ToolShed TRS API
- * or Galaxy's /api/tools/:id/parsed endpoint.
- */
-export declare const ParsedTool: S.Struct<{
-    id: typeof S.String;
-    version: S.NullOr<typeof S.String>;
-    name: typeof S.String;
-    description: S.transform<S.NullOr<typeof S.String>, S.NullOr<typeof S.String>>;
-    inputs: S.Array$<typeof S.Unknown>;
-    outputs: S.Array$<typeof S.Unknown>;
-    citations: S.Array$<S.Struct<{
-        type: typeof S.String;
-        content: typeof S.String;
-    }>>;
-    license: S.NullOr<typeof S.String>;
-    profile: S.NullOr<typeof S.String>;
-    edam_operations: S.Array$<typeof S.String>;
-    edam_topics: S.Array$<typeof S.String>;
-    xrefs: S.Array$<S.Struct<{
-        value: typeof S.String;
-        type: typeof S.String;
-    }>>;
-    help: S.optional<S.Union<[S.Struct<{
-        format: typeof S.String;
-        content: typeof S.String;
-    }>, typeof S.Null]>>;
-}>;
-export type ParsedTool = S.Schema.Type<typeof ParsedTool>;
-//# sourceMappingURL=parsed-tool.d.ts.map

package/dist/models/parsed-tool.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"parsed-tool.d.ts","sourceRoot":"","sources":["../../src/models/parsed-tool.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,CAAC,MAAM,eAAe,CAAC;AAEnC,gFAAgF;AAChF,eAAO,MAAM,WAAW;;;EAGtB,CAAC;AAEH,oEAAoE;AACpE,eAAO,MAAM,QAAQ;;;EAGnB,CAAC;AAEH,+CAA+C;AAC/C,eAAO,MAAM,QAAQ;;;EAGnB,CAAC;AAQH;;;GAGG;AACH,eAAO,MAAM,UAAU;;;;;;;;;;;;;;;;;;;;;;;EAcrB,CAAC;AAEH,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,UAAU,CAAC,CAAC"}

package/dist/models/parsed-tool.js

@@ -1,41 +0,0 @@
-import * as S from "effect/Schema";
-/** Tool help content with format (rst, markdown, etc.) and rendered content. */
-export const HelpContent = S.Struct({
-    format: S.String,
-    content: S.String,
-});
-/** External reference (e.g. bio.tools ID, bioconductor package). */
-export const XrefDict = S.Struct({
-    value: S.String,
-    type: S.String,
-});
-/** Tool citation entry (bibtex, doi, etc.). */
-export const Citation = S.Struct({
-    type: S.String,
-    content: S.String,
-});
-/** Normalize empty string to null for description field. */
-const NullableDescription = S.transform(S.NullOr(S.String), S.NullOr(S.String), {
-    decode: (val) => (val === "" ? null : val),
-    encode: (val) => val,
-});
-/**
- * Effect Schema for parsed Galaxy tool metadata as returned by the ToolShed TRS API
- * or Galaxy's /api/tools/:id/parsed endpoint.
- */
-export const ParsedTool = S.Struct({
-    id: S.String,
-    version: S.NullOr(S.String),
-    name: S.String,
-    description: NullableDescription,
-    inputs: S.Array(S.Unknown),
-    outputs: S.Array(S.Unknown),
-    citations: S.Array(Citation),
-    license: S.NullOr(S.String),
-    profile: S.NullOr(S.String),
-    edam_operations: S.Array(S.String),
-    edam_topics: S.Array(S.String),
-    xrefs: S.Array(XrefDict),
-    help: S.optional(S.Union(HelpContent, S.Null)),
-});
-//# sourceMappingURL=parsed-tool.js.map

package/dist/models/parsed-tool.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"parsed-tool.js","sourceRoot":"","sources":["../../src/models/parsed-tool.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,CAAC,MAAM,eAAe,CAAC;AAEnC,gFAAgF;AAChF,MAAM,CAAC,MAAM,WAAW,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,MAAM,EAAE,CAAC,CAAC,MAAM;IAChB,OAAO,EAAE,CAAC,CAAC,MAAM;CAClB,CAAC,CAAC;AAEH,oEAAoE;AACpE,MAAM,CAAC,MAAM,QAAQ,GAAG,CAAC,CAAC,MAAM,CAAC;IAC/B,KAAK,EAAE,CAAC,CAAC,MAAM;IACf,IAAI,EAAE,CAAC,CAAC,MAAM;CACf,CAAC,CAAC;AAEH,+CAA+C;AAC/C,MAAM,CAAC,MAAM,QAAQ,GAAG,CAAC,CAAC,MAAM,CAAC;IAC/B,IAAI,EAAE,CAAC,CAAC,MAAM;IACd,OAAO,EAAE,CAAC,CAAC,MAAM;CAClB,CAAC,CAAC;AAEH,4DAA4D;AAC5D,MAAM,mBAAmB,GAAG,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,EAAE;IAC9E,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,GAAG,KAAK,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC;IAC1C,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG;CACrB,CAAC,CAAC;AAEH;;;GAGG;AACH,MAAM,CAAC,MAAM,UAAU,GAAG,CAAC,CAAC,MAAM,CAAC;IACjC,EAAE,EAAE,CAAC,CAAC,MAAM;IACZ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC;IAC3B,IAAI,EAAE,CAAC,CAAC,MAAM;IACd,WAAW,EAAE,mBAAmB;IAChC,MAAM,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC;IAC1B,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC;IAC3B,SAAS,EAAE,CAAC,CAAC,KAAK,CAAC,QAAQ,CAAC;IAC5B,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC;IAC3B,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC;IAC3B,eAAe,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC;IAClC,WAAW,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC;IAC9B,KAAK,EAAE,CAAC,CAAC,KAAK,CAAC,QAAQ,CAAC;IACxB,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;CAC/C,CAAC,CAAC"}