@galaxy-tool-util/core 0.1.0 → 0.3.0

package/dist/cache/storage/interface.d.ts

@@ -0,0 +1,17 @@
+/**
+ * Pluggable storage backend for the tool cache.
+ * Implementations: FilesystemCacheStorage (Node.js), IndexedDBCacheStorage (browser/Web Worker).
+ */
+export interface CacheStorage {
+    /** Load a value by key. Returns null if not found. */
+    load(key: string): Promise<unknown | null>;
+    /** Persist a value under key. Creates storage if needed. */
+    save(key: string, data: unknown): Promise<void>;
+    /** Remove a key. No-op if not found. */
+    delete(key: string): Promise<void>;
+    /** List all tool keys (excludes internal metadata keys). */
+    list(): Promise<string[]>;
+    /** Optional bulk insert — single transaction for efficiency (e.g. pre-populating from bundle). */
+    saveAll?(entries: ReadonlyArray<[string, unknown]>): Promise<void>;
+}
+//# sourceMappingURL=interface.d.ts.map

package/dist/cache/storage/interface.d.ts.map

@@ -0,0 +1 @@
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package/dist/cache/storage/interface.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=interface.js.map

package/dist/cache/storage/interface.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"interface.js","sourceRoot":"","sources":["../../../src/cache/storage/interface.ts"],"names":[],"mappings":""}

package/dist/cache/tool-cache-defaults.d.ts

@@ -0,0 +1,7 @@
+/** Default Galaxy ToolShed URL. */
+export declare const DEFAULT_TOOLSHED_URL = "https://toolshed.g2.bx.psu.edu";
+/** Environment variable to override the default ToolShed URL. */
+export declare const TOOLSHED_URL_ENV_VAR = "GALAXY_TOOLSHED_URL";
+/** Environment variable to override the cache directory. */
+export declare const CACHE_DIR_ENV_VAR = "GALAXY_TOOL_CACHE_DIR";
+//# sourceMappingURL=tool-cache-defaults.d.ts.map

package/dist/cache/tool-cache-defaults.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"tool-cache-defaults.d.ts","sourceRoot":"","sources":["../../src/cache/tool-cache-defaults.ts"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,eAAO,MAAM,oBAAoB,mCAAmC,CAAC;AACrE,iEAAiE;AACjE,eAAO,MAAM,oBAAoB,wBAAwB,CAAC;AAC1D,4DAA4D;AAC5D,eAAO,MAAM,iBAAiB,0BAA0B,CAAC"}

package/dist/cache/tool-cache-defaults.js

@@ -0,0 +1,7 @@
+/** Default Galaxy ToolShed URL. */
+export const DEFAULT_TOOLSHED_URL = "https://toolshed.g2.bx.psu.edu";
+/** Environment variable to override the default ToolShed URL. */
+export const TOOLSHED_URL_ENV_VAR = "GALAXY_TOOLSHED_URL";
+/** Environment variable to override the cache directory. */
+export const CACHE_DIR_ENV_VAR = "GALAXY_TOOL_CACHE_DIR";
+//# sourceMappingURL=tool-cache-defaults.js.map

package/dist/cache/tool-cache-defaults.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tool-cache-defaults.js","sourceRoot":"","sources":["../../src/cache/tool-cache-defaults.ts"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,MAAM,CAAC,MAAM,oBAAoB,GAAG,gCAAgC,CAAC;AACrE,iEAAiE;AACjE,MAAM,CAAC,MAAM,oBAAoB,GAAG,qBAAqB,CAAC;AAC1D,4DAA4D;AAC5D,MAAM,CAAC,MAAM,iBAAiB,GAAG,uBAAuB,CAAC"}

package/dist/cache/tool-cache.d.ts

@@ -1,48 +1,43 @@
 import { ParsedTool } from "../models/parsed-tool.js";
 import { CacheIndex } from "./cache-index.js";
-/** Default cache directory: `~/.galaxy/tool_info_cache`. */
-export declare const DEFAULT_CACHE_DIR: string;
-/** Environment variable to override the cache directory. */
-export declare const CACHE_DIR_ENV_VAR = "GALAXY_TOOL_CACHE_DIR";
-/** Default Galaxy ToolShed URL. */
-export declare const DEFAULT_TOOLSHED_URL = "https://toolshed.g2.bx.psu.edu";
-/** Environment variable to override the default ToolShed URL. */
-export declare const TOOLSHED_URL_ENV_VAR = "GALAXY_TOOLSHED_URL";
-/** Resolve cache directory: explicit override > env var > default. */
-export declare function getCacheDir(override?: string): string;
-interface ResolvedCoordinates {
+import type { CacheStorage } from "./storage/interface.js";
+import { DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR } from "./tool-cache-defaults.js";
+export { DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR };
+export interface ResolvedCoordinates {
     toolshedUrl: string;
     trsToolId: string;
     version: string | null;
     readableId: string;
 }
 /**
- * Two-layer cache (memory + filesystem) for parsed Galaxy tool metadata.
+ * Two-layer cache (memory + storage) for parsed Galaxy tool metadata.
  * Resolves tool IDs to cache keys, loads/saves tool JSON, and manages the cache index.
+ *
+ * `storage` is required — pass a `FilesystemCacheStorage` (Node.js) or
+ * `IndexedDBCacheStorage` (browser). Node callers can use `makeNodeToolCache`
+ * from `@galaxy-tool-util/core/node` to get the default filesystem setup.
  */
 export declare class ToolCache {
-    readonly cacheDir: string;
     readonly defaultToolshedUrl: string;
     readonly index: CacheIndex;
+    private readonly storage;
     private memoryCache;
-    constructor(opts?: {
-        cacheDir?: string;
+    constructor(opts: {
+        storage: CacheStorage;
         defaultToolshedUrl?: string;
     });
     resolveToolCoordinates(toolId: string, toolVersion?: string | null): ResolvedCoordinates;
-    private cachePath;
-    hasCached(toolId: string, toolVersion?: string | null): boolean;
+    hasCached(toolId: string, toolVersion?: string | null): Promise<boolean>;
     loadCached(key: string): Promise<ParsedTool | null>;
     saveTool(key: string, parsedTool: ParsedTool, toolId: string, toolVersion: string, source: string, sourceUrl?: string): Promise<void>;
-    listCached(): Array<{
+    listCached(): Promise<Array<{
         cache_key: string;
         tool_id: string;
         tool_version: string;
         source: string;
         source_url: string;
         cached_at: string;
-    }>;
+    }>>;
     clearCache(toolIdPrefix?: string): Promise<void>;
 }
-export {};
 //# sourceMappingURL=tool-cache.d.ts.map

package/dist/cache/tool-cache.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"tool-cache.d.ts","sourceRoot":"","sources":["../../src/cache/tool-cache.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAG9C,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,MAAM,0BAA0B,CAAC;AAEtF,OAAO,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,CAAC;AAStD,MAAM,WAAW,mBAAmB;IAClC,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;;;;;;GAOG;AACH,qBAAa,SAAS;IACpB,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,QAAQ,CAAC,KAAK,EAAE,UAAU,CAAC;IAC3B,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAe;IACvC,OAAO,CAAC,WAAW,CAAiC;gBAExC,IAAI,EAAE;QAAE,OAAO,EAAE,YAAY,CAAC;QAAC,kBAAkB,CAAC,EAAE,MAAM,CAAA;KAAE;IAMxE,sBAAsB,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,mBAAmB;IAkBlF,SAAS,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,OAAO,CAAC,OAAO,CAAC;IAOxE,UAAU,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,GAAG,IAAI,CAAC;IAoBnD,QAAQ,CACZ,GAAG,EAAE,MAAM,EACX,UAAU,EAAE,UAAU,EACtB,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,MAAM,EACnB,MAAM,EAAE,MAAM,EACd,SAAS,GAAE,MAAW,GACrB,OAAO,CAAC,IAAI,CAAC;IAMV,UAAU,IAAI,OAAO,CACzB,KAAK,CAAC;QACJ,SAAS,EAAE,MAAM,CAAC;QAClB,OAAO,EAAE,MAAM,CAAC;QAChB,YAAY,EAAE,MAAM,CAAC;QACrB,MAAM,EAAE,MAAM,CAAC;QACf,UAAU,EAAE,MAAM,CAAC;QACnB,SAAS,EAAE,MAAM,CAAC;KACnB,CAAC,CACH;IAIK,UAAU,CAAC,YAAY,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;CAkBvD"}

package/dist/cache/tool-cache.js

@@ -1,38 +1,33 @@
-import { readFile, writeFile, mkdir, unlink } from "node:fs/promises";
-import { existsSync } from "node:fs";
-import { join } from "node:path";
-import { homedir } from "node:os";
 import * as S from "effect/Schema";
 import { ParsedTool } from "../models/parsed-tool.js";
 import { CacheIndex } from "./cache-index.js";
 import { cacheKey } from "./cache-key.js";
 import { parseToolshedToolId, toolIdFromTrs } from "./tool-id.js";
-/** Default cache directory: `~/.galaxy/tool_info_cache`. */
-export const DEFAULT_CACHE_DIR = join(homedir(), ".galaxy", "tool_info_cache");
-/** Environment variable to override the cache directory. */
-export const CACHE_DIR_ENV_VAR = "GALAXY_TOOL_CACHE_DIR";
-/** Default Galaxy ToolShed URL. */
-export const DEFAULT_TOOLSHED_URL = "https://toolshed.g2.bx.psu.edu";
-/** Environment variable to override the default ToolShed URL. */
-export const TOOLSHED_URL_ENV_VAR = "GALAXY_TOOLSHED_URL";
-/** Resolve cache directory: explicit override > env var > default. */
-export function getCacheDir(override) {
-    return override ?? process.env[CACHE_DIR_ENV_VAR] ?? DEFAULT_CACHE_DIR;
+import { DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR } from "./tool-cache-defaults.js";
+export { DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR };
+function envToolshedUrl() {
+    if (typeof process !== "undefined" && process.env) {
+        return process.env[TOOLSHED_URL_ENV_VAR];
+    }
+    return undefined;
 }
 /**
- * Two-layer cache (memory + filesystem) for parsed Galaxy tool metadata.
+ * Two-layer cache (memory + storage) for parsed Galaxy tool metadata.
  * Resolves tool IDs to cache keys, loads/saves tool JSON, and manages the cache index.
+ *
+ * `storage` is required — pass a `FilesystemCacheStorage` (Node.js) or
+ * `IndexedDBCacheStorage` (browser). Node callers can use `makeNodeToolCache`
+ * from `@galaxy-tool-util/core/node` to get the default filesystem setup.
  */
 export class ToolCache {
-    cacheDir;
     defaultToolshedUrl;
     index;
+    storage;
     memoryCache = new Map();
     constructor(opts) {
-        this.cacheDir = getCacheDir(opts?.cacheDir);
-        this.defaultToolshedUrl =
-            opts?.defaultToolshedUrl ?? process.env[TOOLSHED_URL_ENV_VAR] ?? DEFAULT_TOOLSHED_URL;
-        this.index = new CacheIndex(this.cacheDir);
+        this.defaultToolshedUrl = opts.defaultToolshedUrl ?? envToolshedUrl() ?? DEFAULT_TOOLSHED_URL;
+        this.storage = opts.storage;
+        this.index = new CacheIndex(this.storage);
     }
     resolveToolCoordinates(toolId, toolVersion) {
         const parsed = parseToolshedToolId(toolId);
@@ -51,29 +46,25 @@ export class ToolCache {
             readableId: toolIdFromTrs(this.defaultToolshedUrl, toolId),
         };
     }
-    cachePath(key) {
-        return join(this.cacheDir, `${key}.json`);
-    }
-    hasCached(toolId, toolVersion) {
+    async hasCached(toolId, toolVersion) {
         const coords = this.resolveToolCoordinates(toolId, toolVersion);
         if (coords.version === null)
             return false;
-        const key = cacheKey(coords.toolshedUrl, coords.trsToolId, coords.version);
-        return this.memoryCache.has(key) || existsSync(this.cachePath(key));
+        const key = await cacheKey(coords.toolshedUrl, coords.trsToolId, coords.version);
+        return this.memoryCache.has(key) || (await this.storage.load(key)) !== null;
     }
     async loadCached(key) {
         if (this.memoryCache.has(key)) {
             return this.memoryCache.get(key);
         }
-        const path = this.cachePath(key);
-        if (!existsSync(path))
-            return null;
         try {
-            const raw = await readFile(path, "utf-8");
-            const data = JSON.parse(raw);
+            const data = await this.storage.load(key);
+            if (data === null)
+                return null;
             const parsedTool = S.decodeUnknownSync(ParsedTool)(data);
-            if (!this.index.has(key)) {
-                await this.index.add(key, data.id ?? "unknown", data.version ?? "unknown", "unknown");
+            if (!(await this.index.has(key))) {
+                const d = data;
+                await this.index.add(key, d.id ?? "unknown", d.version ?? "unknown", "unknown");
             }
             this.memoryCache.set(key, parsedTool);
             return parsedTool;
@@ -84,32 +75,27 @@ export class ToolCache {
         }
     }
     async saveTool(key, parsedTool, toolId, toolVersion, source, sourceUrl = "") {
-        await mkdir(this.cacheDir, { recursive: true });
-        const path = this.cachePath(key);
-        await writeFile(path, JSON.stringify(parsedTool, null, 2));
+        await this.storage.save(key, parsedTool);
         await this.index.add(key, toolId, toolVersion, source, sourceUrl);
         this.memoryCache.set(key, parsedTool);
     }
-    listCached() {
+    async listCached() {
         return this.index.listAll();
     }
     async clearCache(toolIdPrefix) {
         if (toolIdPrefix === undefined) {
-            for (const entry of this.index.listAll()) {
-                const path = this.cachePath(entry.cache_key);
-                if (existsSync(path))
-                    await unlink(path);
+            const keys = await this.storage.list();
+            for (const key of keys) {
+                await this.storage.delete(key);
             }
             await this.index.clear();
             this.memoryCache.clear();
         }
         else {
             const prefix = toolIdPrefix.replace(/\*$/, "");
-            const toRemove = this.index.listAll().filter((e) => e.tool_id.startsWith(prefix));
+            const toRemove = (await this.index.listAll()).filter((e) => e.tool_id.startsWith(prefix));
             for (const entry of toRemove) {
-                const path = this.cachePath(entry.cache_key);
-                if (existsSync(path))
-                    await unlink(path);
+                await this.storage.delete(entry.cache_key);
                 await this.index.remove(entry.cache_key);
                 this.memoryCache.delete(entry.cache_key);
             }

package/dist/cache/tool-cache.js.map

@@ -1 +1 @@
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+{"version":3,"file":"tool-cache.js","sourceRoot":"","sources":["../../src/cache/tool-cache.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,CAAC,MAAM,eAAe,CAAC;AAEnC,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAC1C,OAAO,EAAE,mBAAmB,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAElE,OAAO,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,MAAM,0BAA0B,CAAC;AAEtF,OAAO,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,CAAC;AAEtD,SAAS,cAAc;IACrB,IAAI,OAAO,OAAO,KAAK,WAAW,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;QAClD,OAAO,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,CAAC;IAC3C,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AASD;;;;;;;GAOG;AACH,MAAM,OAAO,SAAS;IACX,kBAAkB,CAAS;IAC3B,KAAK,CAAa;IACV,OAAO,CAAe;IAC/B,WAAW,GAAG,IAAI,GAAG,EAAsB,CAAC;IAEpD,YAAY,IAA4D;QACtE,IAAI,CAAC,kBAAkB,GAAG,IAAI,CAAC,kBAAkB,IAAI,cAAc,EAAE,IAAI,oBAAoB,CAAC;QAC9F,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;QAC5B,IAAI,CAAC,KAAK,GAAG,IAAI,UAAU,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IAC5C,CAAC;IAED,sBAAsB,CAAC,MAAc,EAAE,WAA2B;QAChE,MAAM,MAAM,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAC;QAC3C,IAAI,MAAM,KAAK,IAAI,EAAE,CAAC;YACpB,OAAO;gBACL,WAAW,EAAE,MAAM,CAAC,WAAW;gBAC/B,SAAS,EAAE,MAAM,CAAC,SAAS;gBAC3B,OAAO,EAAE,WAAW,IAAI,MAAM,CAAC,WAAW;gBAC1C,UAAU,EAAE,aAAa,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,CAAC;aAChE,CAAC;QACJ,CAAC;QACD,OAAO;YACL,WAAW,EAAE,IAAI,CAAC,kBAAkB;YACpC,SAAS,EAAE,MAAM;YACjB,OAAO,EAAE,WAAW,IAAI,IAAI;YAC5B,UAAU,EAAE,aAAa,CAAC,IAAI,CAAC,kBAAkB,EAAE,MAAM,CAAC;SAC3D,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,MAAc,EAAE,WAA2B;QACzD,MAAM,MAAM,GAAG,IAAI,CAAC,sBAAsB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QAChE,IAAI,MAAM,CAAC,OAAO,KAAK,IAAI;YAAE,OAAO,KAAK,CAAC;QAC1C,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;QACjF,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,KAAK,IAAI,CAAC;IAC9E,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,GAAW;QAC1B,IAAI,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;YAC9B,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,CAAE,CAAC;QACpC,CAAC;QACD,IAAI,CAAC;YACH,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YAC1C,IAAI,IAAI,KAAK,IAAI;gBAAE,OAAO,IAAI,CAAC;YAC/B,MAAM,UAAU,GAAG,CAAC,CAAC,iBAAiB,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,CAAC;YACzD,IAAI,CAAC,CAAC,MAAM,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC;gBACjC,MAAM,CAAC,GAAG,IAAyC,CAAC;gBACpD,MAAM,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,IAAI,SAAS,EAAE,CAAC,CAAC,OAAO,IAAI,SAAS,EAAE,SAAS,CAAC,CAAC;YAClF,CAAC;YACD,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,EAAE,UAAU,CAAC,CAAC;YACtC,OAAO,UAAU,CAAC;QACpB,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,OAAO,CAAC,KAAK,CAAC,8BAA8B,GAAG,KAAK,GAAG,EAAE,CAAC,CAAC;YAC3D,OAAO,IAAI,CAAC;QACd,CAAC;IACH,CAAC;IAED,KAAK,CAAC,QAAQ,CACZ,GAAW,EACX,UAAsB,EACtB,MAAc,EACd,WAAmB,EACnB,MAAc,EACd,YAAoB,EAAE;QAEtB,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,EAAE,UAAU,CAAC,CAAC;QACzC,MAAM,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC;QAClE,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,GAAG,EAAE,UAAU,CAAC,CAAC;IACxC,CAAC;IAED,KAAK,CAAC,UAAU;QAUd,OAAO,IAAI,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC;IAC9B,CAAC;IAED,KAAK,CAAC,UAAU,CAAC,YAAqB;QACpC,IAAI,YAAY,KAAK,SAAS,EAAE,CAAC;YAC/B,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC;YACvC,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;gBACvB,MAAM,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YACjC,CAAC;YACD,MAAM,IAAI,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC;YACzB,IAAI,CAAC,WAAW,CAAC,KAAK,EAAE,CAAC;QAC3B,CAAC;aAAM,CAAC;YACN,MAAM,MAAM,GAAG,YAAY,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;YAC/C,MAAM,QAAQ,GAAG,CAAC,MAAM,IAAI,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC;YAC1F,KAAK,MAAM,KAAK,IAAI,QAAQ,EAAE,CAAC;gBAC7B,MAAM,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;gBAC3C,MAAM,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;gBACzC,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;YAC3C,CAAC;QACH,CAAC;IACH,CAAC;CACF"}

package/dist/cache/tool-id.d.ts

@@ -1,14 +1,14 @@
 /**
  * Parse and manipulate Galaxy toolshed tool IDs.
  *
- * Input format: toolshed.g2.bx.psu.edu/repos/owner/repo/tool_name/version
- * Or with scheme: https://toolshed.g2.bx.psu.edu/repos/owner/repo/tool_name/version
+ * Input format: toolshed.g2.bx.psu.edu/repos/owner/repo/tool_id/version
+ * Or with scheme: https://toolshed.g2.bx.psu.edu/repos/owner/repo/tool_id/version
  */
 /** Parsed components of a ToolShed tool ID. */
 export interface ToolCoordinates {
     /** ToolShed base URL (with https:// scheme). */
     toolshedUrl: string;
-    /** TRS-style tool ID: `owner~repo~tool_name`. */
+    /** TRS-style tool ID: `owner~repo~tool_id`. */
     trsToolId: string;
     /** Tool version, or null if not present in the ID. */
     toolVersion: string | null;
@@ -16,8 +16,8 @@ export interface ToolCoordinates {
 /**
  * Parse a full ToolShed tool ID into its components.
  * Accepts both scheme-prefixed and bare formats:
- * - `toolshed.g2.bx.psu.edu/repos/owner/repo/tool_name/version`
- * - `https://toolshed.g2.bx.psu.edu/repos/owner/repo/tool_name/version`
+ * - `toolshed.g2.bx.psu.edu/repos/owner/repo/tool_id/version`
+ * - `https://toolshed.g2.bx.psu.edu/repos/owner/repo/tool_id/version`
  * @returns Parsed coordinates, or null if the ID doesn't match the ToolShed format.
  */
 export declare function parseToolshedToolId(toolId: string): ToolCoordinates | null;

package/dist/cache/tool-id.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"tool-id.d.ts","sourceRoot":"","sources":["../../src/cache/tool-id.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,+CAA+C;AAC/C,MAAM,WAAW,eAAe;IAC9B,gDAAgD;IAChD,WAAW,EAAE,MAAM,CAAC;IACpB,iDAAiD;IACjD,SAAS,EAAE,MAAM,CAAC;IAClB,sDAAsD;IACtD,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;CAC5B;AAED;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,MAAM,GAAG,eAAe,GAAG,IAAI,CAa1E;AAED,gFAAgF;AAChF,wBAAgB,aAAa,CAAC,WAAW,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CAI5E"}
+{"version":3,"file":"tool-id.d.ts","sourceRoot":"","sources":["../../src/cache/tool-id.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,+CAA+C;AAC/C,MAAM,WAAW,eAAe;IAC9B,gDAAgD;IAChD,WAAW,EAAE,MAAM,CAAC;IACpB,+CAA+C;IAC/C,SAAS,EAAE,MAAM,CAAC;IAClB,sDAAsD;IACtD,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;CAC5B;AAED;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,MAAM,GAAG,eAAe,GAAG,IAAI,CAa1E;AAED,gFAAgF;AAChF,wBAAgB,aAAa,CAAC,WAAW,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CAI5E"}

package/dist/cache/tool-id.js

@@ -1,14 +1,14 @@
 /**
  * Parse and manipulate Galaxy toolshed tool IDs.
  *
- * Input format: toolshed.g2.bx.psu.edu/repos/owner/repo/tool_name/version
- * Or with scheme: https://toolshed.g2.bx.psu.edu/repos/owner/repo/tool_name/version
+ * Input format: toolshed.g2.bx.psu.edu/repos/owner/repo/tool_id/version
+ * Or with scheme: https://toolshed.g2.bx.psu.edu/repos/owner/repo/tool_id/version
  */
 /**
  * Parse a full ToolShed tool ID into its components.
  * Accepts both scheme-prefixed and bare formats:
- * - `toolshed.g2.bx.psu.edu/repos/owner/repo/tool_name/version`
- * - `https://toolshed.g2.bx.psu.edu/repos/owner/repo/tool_name/version`
+ * - `toolshed.g2.bx.psu.edu/repos/owner/repo/tool_id/version`
+ * - `https://toolshed.g2.bx.psu.edu/repos/owner/repo/tool_id/version`
  * @returns Parsed coordinates, or null if the ID doesn't match the ToolShed format.
  */
 export function parseToolshedToolId(toolId) {

package/dist/config-node.d.ts

@@ -0,0 +1,7 @@
+import { WorkflowToolConfig } from "./config.js";
+/**
+ * Load the shared tool configuration portion from a YAML file.
+ * Unknown fields (e.g. `port`, `host`) are silently ignored.
+ */
+export declare function loadWorkflowToolConfig(configPath: string): Promise<WorkflowToolConfig>;
+//# sourceMappingURL=config-node.d.ts.map

package/dist/config-node.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"config-node.d.ts","sourceRoot":"","sources":["../src/config-node.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAC;AAEjD;;;GAGG;AACH,wBAAsB,sBAAsB,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAI5F"}

package/dist/config-node.js

@@ -0,0 +1,14 @@
+import { readFile } from "node:fs/promises";
+import * as S from "effect/Schema";
+import YAML from "yaml";
+import { WorkflowToolConfig } from "./config.js";
+/**
+ * Load the shared tool configuration portion from a YAML file.
+ * Unknown fields (e.g. `port`, `host`) are silently ignored.
+ */
+export async function loadWorkflowToolConfig(configPath) {
+    const raw = await readFile(configPath, "utf-8");
+    const parsed = YAML.parse(raw);
+    return S.decodeUnknownSync(WorkflowToolConfig)(parsed);
+}
+//# sourceMappingURL=config-node.js.map

package/dist/config-node.js.map

@@ -0,0 +1 @@
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package/dist/config.d.ts

@@ -0,0 +1,75 @@
+/**
+ * Shared YAML configuration schema for Galaxy workflow tool settings.
+ *
+ * Both `galaxy-tool-proxy` and `gxwf-web` read the same `galaxy.workflows.*`
+ * sections from their config files. This module defines those shared schemas
+ * so the field names, types, and defaults stay in sync.
+ *
+ * Each server may extend this with its own fields (e.g. `port`/`host` for the
+ * proxy). Use `S.Struct({ ...WorkflowToolConfig.fields, myField: ... })`.
+ */
+import * as S from "effect/Schema";
+import type { ToolSource } from "./tool-info.js";
+/** Effect Schema for a tool source entry. */
+export declare const ToolSourceConfig: S.Struct<{
+    type: S.Union<[S.Literal<["toolshed"]>, S.Literal<["galaxy"]>]>;
+    url: typeof S.String;
+    /** Whether the source is active. Disabled sources are skipped at runtime. */
+    enabled: S.optionalWith<typeof S.Boolean, {
+        default: () => true;
+    }>;
+}>;
+export type ToolSourceConfig = S.Schema.Type<typeof ToolSourceConfig>;
+/** Effect Schema for the cache directory setting. */
+export declare const ToolCacheConfig: S.Struct<{
+    directory: S.optional<typeof S.String>;
+}>;
+export type ToolCacheConfig = S.Schema.Type<typeof ToolCacheConfig>;
+/**
+ * Shared Galaxy workflow tool configuration — the portion of the YAML config
+ * common to both `galaxy-tool-proxy` and `gxwf-web`.
+ *
+ * ```yaml
+ * galaxy.workflows.toolSources:
+ *   - type: toolshed
+ *     url: https://toolshed.g2.bx.psu.edu
+ *   - type: galaxy
+ *     url: https://usegalaxy.org
+ *     enabled: false
+ * galaxy.workflows.toolCache:
+ *   directory: /tmp/galaxy-tool-cache
+ * ```
+ */
+export declare const WorkflowToolConfig: S.Struct<{
+    "galaxy.workflows.toolSources": S.optionalWith<S.Array$<S.Struct<{
+        type: S.Union<[S.Literal<["toolshed"]>, S.Literal<["galaxy"]>]>;
+        url: typeof S.String;
+        /** Whether the source is active. Disabled sources are skipped at runtime. */
+        enabled: S.optionalWith<typeof S.Boolean, {
+            default: () => true;
+        }>;
+    }>>, {
+        default: () => never[];
+    }>;
+    "galaxy.workflows.toolCache": S.optionalWith<S.Struct<{
+        directory: S.optional<typeof S.String>;
+    }>, {
+        default: () => S.Schema.Type<typeof ToolCacheConfig>;
+    }>;
+}>;
+export type WorkflowToolConfig = S.Schema.Type<typeof WorkflowToolConfig>;
+/**
+ * Config-derived runtime options. Narrow subset of tool-info + cache options
+ * that come from a YAML config, without any backend/storage choice.
+ */
+export interface ConfigToolInfoOptions {
+    cacheDir?: string;
+    sources?: ToolSource[];
+}
+/**
+ * Convert a WorkflowToolConfig to runtime options. Filters out disabled sources.
+ * Node callers pair this with `makeNodeToolInfoService` (from `/node`) to
+ * construct a ToolInfoService with filesystem storage.
+ */
+export declare function toolInfoOptionsFromConfig(config: WorkflowToolConfig): ConfigToolInfoOptions;
+//# sourceMappingURL=config.d.ts.map

package/dist/config.d.ts.map

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package/dist/config.js

@@ -0,0 +1,60 @@
+/**
+ * Shared YAML configuration schema for Galaxy workflow tool settings.
+ *
+ * Both `galaxy-tool-proxy` and `gxwf-web` read the same `galaxy.workflows.*`
+ * sections from their config files. This module defines those shared schemas
+ * so the field names, types, and defaults stay in sync.
+ *
+ * Each server may extend this with its own fields (e.g. `port`/`host` for the
+ * proxy). Use `S.Struct({ ...WorkflowToolConfig.fields, myField: ... })`.
+ */
+import * as S from "effect/Schema";
+/** Effect Schema for a tool source entry. */
+export const ToolSourceConfig = S.Struct({
+    type: S.Union(S.Literal("toolshed"), S.Literal("galaxy")),
+    url: S.String,
+    /** Whether the source is active. Disabled sources are skipped at runtime. */
+    enabled: S.optionalWith(S.Boolean, { default: () => true }),
+});
+/** Effect Schema for the cache directory setting. */
+export const ToolCacheConfig = S.Struct({
+    directory: S.optional(S.String),
+});
+/**
+ * Shared Galaxy workflow tool configuration — the portion of the YAML config
+ * common to both `galaxy-tool-proxy` and `gxwf-web`.
+ *
+ * ```yaml
+ * galaxy.workflows.toolSources:
+ *   - type: toolshed
+ *     url: https://toolshed.g2.bx.psu.edu
+ *   - type: galaxy
+ *     url: https://usegalaxy.org
+ *     enabled: false
+ * galaxy.workflows.toolCache:
+ *   directory: /tmp/galaxy-tool-cache
+ * ```
+ */
+export const WorkflowToolConfig = S.Struct({
+    "galaxy.workflows.toolSources": S.optionalWith(S.Array(ToolSourceConfig), {
+        default: () => [],
+    }),
+    "galaxy.workflows.toolCache": S.optionalWith(ToolCacheConfig, {
+        default: () => ({}),
+    }),
+});
+/**
+ * Convert a WorkflowToolConfig to runtime options. Filters out disabled sources.
+ * Node callers pair this with `makeNodeToolInfoService` (from `/node`) to
+ * construct a ToolInfoService with filesystem storage.
+ */
+export function toolInfoOptionsFromConfig(config) {
+    const enabledSources = config["galaxy.workflows.toolSources"]
+        .filter((s) => s.enabled)
+        .map((s) => ({ type: s.type, url: s.url }));
+    return {
+        cacheDir: config["galaxy.workflows.toolCache"]?.directory,
+        sources: enabledSources.length > 0 ? enabledSources : undefined,
+    };
+}
+//# sourceMappingURL=config.js.map

package/dist/config.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts

@@ -1,8 +1,9 @@
 /**
  * @module @galaxy-tool-util/core
  *
- * Galaxy tool cache, ToolShed/Galaxy API client, and ParsedTool model.
- * Handles fetching tool metadata from remote sources and caching locally.
+ * Universal entry — safe to import in Node or browser. Symbols that require
+ * Node built-ins (filesystem cache storage, YAML config loading) live under
+ * `@galaxy-tool-util/core/node`.
  */
 /** Effect Schema for parsed tool metadata (id, version, name, inputs, outputs, etc.). */
 export { ParsedTool, HelpContent, XrefDict, Citation } from "./models/parsed-tool.js";
@@ -15,14 +16,17 @@ toolIdFromTrs,
 cacheKey, 
 /** Cache metadata index — tracks tool IDs, versions, sources, and timestamps. */
 CacheIndex, 
-/** Two-layer cache (memory + filesystem) for parsed tool metadata. */
-ToolCache, 
-/** Resolve cache directory from explicit override, env var, or default. */
-getCacheDir, DEFAULT_CACHE_DIR, CACHE_DIR_ENV_VAR, DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR, } from "./cache/index.js";
-export type { ToolCoordinates, CacheIndexEntry, CacheIndexData } from "./cache/index.js";
+/** Two-layer cache (memory + storage) for parsed tool metadata. */
+ToolCache, DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR, } from "./cache/index.js";
+export type { ToolCoordinates, CacheIndexEntry, CacheIndexData, CacheStorage, ResolvedCoordinates, } from "./cache/index.js";
+/** IndexedDB-backed cache storage for browser/Web Worker contexts. */
+export { IndexedDBCacheStorage } from "./cache/index.js";
 /** Fetch parsed tool metadata from a ToolShed instance via TRS API. */
 export { fetchFromToolShed, fetchFromGalaxy, ToolFetchError } from "./client/index.js";
 /** High-level service: fetch tools from multiple sources with automatic caching. */
 export { ToolInfoService } from "./tool-info.js";
 export type { ToolInfoOptions, ToolSource } from "./tool-info.js";
+/** Shared YAML config schema for tool sources and cache settings. */
+export { WorkflowToolConfig, ToolSourceConfig, ToolCacheConfig, toolInfoOptionsFromConfig, } from "./config.js";
+export type { ConfigToolInfoOptions } from "./config.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,yFAAyF;AACzF,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AACtF,OAAO;AACL,4FAA4F;AAC5F,mBAAmB;AACnB,oEAAoE;AACpE,aAAa;AACb,sFAAsF;AACtF,QAAQ;AACR,iFAAiF;AACjF,UAAU;AACV,mEAAmE;AACnE,SAAS,EACT,oBAAoB,EACpB,oBAAoB,GACrB,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EACV,eAAe,EACf,eAAe,EACf,cAAc,EACd,YAAY,EACZ,mBAAmB,GACpB,MAAM,kBAAkB,CAAC;AAC1B,sEAAsE;AACtE,OAAO,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AACzD,uEAAuE;AACvE,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AACvF,oFAAoF;AACpF,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AACjD,YAAY,EAAE,eAAe,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAClE,qEAAqE;AACrE,OAAO,EACL,kBAAkB,EAClB,gBAAgB,EAChB,eAAe,EACf,yBAAyB,GAC1B,MAAM,aAAa,CAAC;AACrB,YAAY,EAAE,qBAAqB,EAAE,MAAM,aAAa,CAAC"}

package/dist/index.js

@@ -1,8 +1,9 @@
 /**
  * @module @galaxy-tool-util/core
  *
- * Galaxy tool cache, ToolShed/Galaxy API client, and ParsedTool model.
- * Handles fetching tool metadata from remote sources and caching locally.
+ * Universal entry — safe to import in Node or browser. Symbols that require
+ * Node built-ins (filesystem cache storage, YAML config loading) live under
+ * `@galaxy-tool-util/core/node`.
  */
 /** Effect Schema for parsed tool metadata (id, version, name, inputs, outputs, etc.). */
 export { ParsedTool, HelpContent, XrefDict, Citation } from "./models/parsed-tool.js";
@@ -15,12 +16,14 @@ toolIdFromTrs,
 cacheKey, 
 /** Cache metadata index — tracks tool IDs, versions, sources, and timestamps. */
 CacheIndex, 
-/** Two-layer cache (memory + filesystem) for parsed tool metadata. */
-ToolCache, 
-/** Resolve cache directory from explicit override, env var, or default. */
-getCacheDir, DEFAULT_CACHE_DIR, CACHE_DIR_ENV_VAR, DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR, } from "./cache/index.js";
+/** Two-layer cache (memory + storage) for parsed tool metadata. */
+ToolCache, DEFAULT_TOOLSHED_URL, TOOLSHED_URL_ENV_VAR, } from "./cache/index.js";
+/** IndexedDB-backed cache storage for browser/Web Worker contexts. */
+export { IndexedDBCacheStorage } from "./cache/index.js";
 /** Fetch parsed tool metadata from a ToolShed instance via TRS API. */
 export { fetchFromToolShed, fetchFromGalaxy, ToolFetchError } from "./client/index.js";
 /** High-level service: fetch tools from multiple sources with automatic caching. */
 export { ToolInfoService } from "./tool-info.js";
+/** Shared YAML config schema for tool sources and cache settings. */
+export { WorkflowToolConfig, ToolSourceConfig, ToolCacheConfig, toolInfoOptionsFromConfig, } from "./config.js";
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,yFAAyF;AACzF,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AACtF,OAAO;AACL,4FAA4F;AAC5F,mBAAmB;AACnB,oEAAoE;AACpE,aAAa;AACb,sFAAsF;AACtF,QAAQ;AACR,iFAAiF;AACjF,UAAU;AACV,mEAAmE;AACnE,SAAS,EACT,oBAAoB,EACpB,oBAAoB,GACrB,MAAM,kBAAkB,CAAC;AAQ1B,sEAAsE;AACtE,OAAO,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AACzD,uEAAuE;AACvE,OAAO,EAAE,iBAAiB,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,mBAAmB,CAAC;AACvF,oFAAoF;AACpF,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAEjD,qEAAqE;AACrE,OAAO,EACL,kBAAkB,EAClB,gBAAgB,EAChB,eAAe,EACf,yBAAyB,GAC1B,MAAM,aAAa,CAAC"}