@galaxy-tool-util/cli 1.8.1 → 1.9.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/commands/cytoscapejs.d.ts +2 -0
- package/dist/commands/cytoscapejs.d.ts.map +1 -1
- package/dist/commands/cytoscapejs.js +4 -1
- package/dist/commands/cytoscapejs.js.map +1 -1
- package/dist/commands/mermaid.d.ts +2 -0
- package/dist/commands/mermaid.d.ts.map +1 -1
- package/dist/commands/mermaid.js +6 -1
- package/dist/commands/mermaid.js.map +1 -1
- package/dist/programs/gxwf.d.ts.map +1 -1
- package/dist/programs/gxwf.js +2 -0
- package/dist/programs/gxwf.js.map +1 -1
- package/package.json +5 -5
- package/spec/gxwf.json +8 -0
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@@ -6,6 +6,8 @@ export interface CytoscapeJsCommandOptions {
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annotateConnections?: boolean;
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cacheDir?: string;
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layout?: string;
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+
/** When false, force plain rendering for draft workflows (no planned styling). */
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draftOverlay?: boolean;
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}
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export declare function renderHtml(elements: CytoscapeElements, layout?: LayoutName): string;
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export declare function runCytoscapeJs(filePath: string, opts: CytoscapeJsCommandOptions): Promise<void>;
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"cytoscapejs.d.ts","sourceRoot":"","sources":["../../src/commands/cytoscapejs.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AAO9E,MAAM,WAAW,yBAAyB;IACxC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAC9B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;
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1
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{"version":3,"file":"cytoscapejs.d.ts","sourceRoot":"","sources":["../../src/commands/cytoscapejs.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AAO9E,MAAM,WAAW,yBAAyB;IACxC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAC9B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,kFAAkF;IAClF,YAAY,CAAC,EAAE,OAAO,CAAC;CACxB;AAED,wBAAgB,UAAU,CAAC,QAAQ,EAAE,iBAAiB,EAAE,MAAM,GAAE,UAAqB,GAAG,MAAM,CAQ7F;AAmBD,wBAAsB,cAAc,CAClC,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,yBAAyB,GAC9B,OAAO,CAAC,IAAI,CAAC,CAkCf"}
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@@ -42,7 +42,10 @@ export async function runCytoscapeJs(filePath, opts) {
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const edgeAnnotations = opts.annotateConnections
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? await resolveEdgeAnnotations(data, { cacheDir: opts.cacheDir })
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: undefined;
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-
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+
// Drafts auto-detect planned styling; `--no-draft-overlay` (draftOverlay ===
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// false) forces plain. Concrete workflows are unaffected either way.
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const draftOverlay = opts.draftOverlay === false ? null : undefined;
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const elements = cytoscapeElements(data, { edgeAnnotations, layout, draftOverlay });
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const format = chooseFormat(opts);
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// JSON shape: bare list when layout=preset (Python parity), wrapped
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// {elements, layout} when caller opted in to a non-default layout. The
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"cytoscapejs.js","sourceRoot":"","sources":["../../src/commands/cytoscapejs.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AACH,OAAO,EAAE,iBAAiB,EAAE,cAAc,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AAE3F,OAAO,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAE7C,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAC;AACnE,OAAO,EAAE,uBAAuB,EAAE,MAAM,oCAAoC,CAAC;AAC7E,OAAO,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;
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1
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+
{"version":3,"file":"cytoscapejs.js","sourceRoot":"","sources":["../../src/commands/cytoscapejs.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AACH,OAAO,EAAE,iBAAiB,EAAE,cAAc,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AAE3F,OAAO,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAE7C,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAC;AACnE,OAAO,EAAE,uBAAuB,EAAE,MAAM,oCAAoC,CAAC;AAC7E,OAAO,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAapD,MAAM,UAAU,UAAU,CAAC,QAA2B,EAAE,SAAqB,QAAQ;IACnF,MAAM,YAAY,GAAG,IAAI,CAAC,SAAS,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAC,CAAC;IAC9D,yEAAyE;IACzE,oFAAoF;IACpF,OAAO,uBAAuB,CAAC,UAAU,CAAC,WAAW,EAAE,YAAY,CAAC,CAAC,UAAU,CAC7E,SAAS,EACT,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CACvB,CAAC;AACJ,CAAC;AAED,SAAS,YAAY,CAAC,IAA+B;IACnD,IAAI,IAAI,CAAC,IAAI;QAAE,OAAO,MAAM,CAAC;IAC7B,IAAI,IAAI,CAAC,IAAI;QAAE,OAAO,MAAM,CAAC;IAC7B,IAAI,IAAI,CAAC,MAAM,EAAE,QAAQ,CAAC,OAAO,CAAC;QAAE,OAAO,MAAM,CAAC;IAClD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,SAAS,aAAa,CAAC,GAAuB;IAC5C,IAAI,GAAG,IAAI,IAAI;QAAE,OAAO,QAAQ,CAAC;IACjC,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,EAAE,CAAC;QACvB,MAAM,IAAI,KAAK,CACb,qBAAqB,GAAG,gFAAgF,CACzG,CAAC;IACJ,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,QAAgB,EAChB,IAA+B;IAE/B,MAAM,IAAI,GAAG,MAAM,gBAAgB,CAAC,QAAQ,CAAC,CAAC;IAC9C,IAAI,CAAC,IAAI;QAAE,OAAO;IAElB,MAAM,MAAM,GAAG,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAE1C,MAAM,eAAe,GAAG,IAAI,CAAC,mBAAmB;QAC9C,CAAC,CAAC,MAAM,sBAAsB,CAAC,IAAI,EAAE,EAAE,QAAQ,EAAE,IAAI,CAAC,QAAQ,EAAE,CAAC;QACjE,CAAC,CAAC,SAAS,CAAC;IAEd,6EAA6E;IAC7E,qEAAqE;IACrE,MAAM,YAAY,GAAG,IAAI,CAAC,YAAY,KAAK,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS,CAAC;IACpE,MAAM,QAAQ,GAAG,iBAAiB,CAAC,IAAI,EAAE,EAAE,eAAe,EAAE,MAAM,EAAE,YAAY,EAAE,CAAC,CAAC;IACpF,MAAM,MAAM,GAAG,YAAY,CAAC,IAAI,CAAC,CAAC;IAElC,oEAAoE;IACpE,uEAAuE;IACvE,4EAA4E;IAC5E,uBAAuB;IACvB,MAAM,WAAW,GACf,MAAM,KAAK,QAAQ;QACjB,CAAC,CAAC,cAAc,CAAC,QAAQ,CAAC;QAC1B,CAAC,CAAC,EAAE,QAAQ,EAAE,cAAc,CAAC,QAAQ,CAAC,EAAE,MAAM,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,EAAE,CAAC;IAEvE,MAAM,OAAO,GACX,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC,UAAU,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC,WAAW,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;IAE1F,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;QACjB,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,CAAC;QACrC,OAAO;IACT,CAAC;IACD,MAAM,SAAS,CAAC,IAAI,CAAC,MAAM,EAAE,OAAO,GAAG,IAAI,EAAE,OAAO,CAAC,CAAC;IACtD,OAAO,CAAC,KAAK,CAAC,aAAa,MAAM,CAAC,WAAW,EAAE,eAAe,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;AAC/E,CAAC"}
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@@ -3,6 +3,8 @@ export interface MermaidCommandOptions {
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comments?: boolean;
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annotateConnections?: boolean;
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cacheDir?: string;
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/** Force plain rendering for a draft workflow (skip planned/concrete styling). */
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draftOverlay?: boolean;
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}
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export declare function runMermaid(filePath: string, opts: MermaidCommandOptions): Promise<void>;
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//# sourceMappingURL=mermaid.d.ts.map
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@@ -1 +1 @@
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{"version":3,"file":"mermaid.d.ts","sourceRoot":"","sources":["../../src/commands/mermaid.ts"],"names":[],"mappings":"AAQA,MAAM,WAAW,qBAAqB;IACpC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAC9B,QAAQ,CAAC,EAAE,MAAM,CAAC;
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{"version":3,"file":"mermaid.d.ts","sourceRoot":"","sources":["../../src/commands/mermaid.ts"],"names":[],"mappings":"AAQA,MAAM,WAAW,qBAAqB;IACpC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAC9B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,kFAAkF;IAClF,YAAY,CAAC,EAAE,OAAO,CAAC;CACxB;AAED,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CAyB7F"}
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package/dist/commands/mermaid.js
CHANGED
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@@ -12,7 +12,12 @@ export async function runMermaid(filePath, opts) {
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const edgeAnnotations = opts.annotateConnections
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? await resolveEdgeAnnotations(data, { cacheDir: opts.cacheDir })
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: undefined;
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-
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// Drafts auto-detect planned styling; `--no-draft-overlay` forces plain output.
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const diagram = workflowToMermaid(data, {
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comments: opts.comments,
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edgeAnnotations,
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draftOverlay: opts.draftOverlay === false ? null : undefined,
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});
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if (!opts.output) {
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process.stdout.write(diagram + "\n");
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return;
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@@ -1 +1 @@
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{"version":3,"file":"mermaid.js","sourceRoot":"","sources":["../../src/commands/mermaid.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,OAAO,EAAE,iBAAiB,EAAE,MAAM,0BAA0B,CAAC;AAC7D,OAAO,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAC7C,OAAO,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AACpD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAC;
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{"version":3,"file":"mermaid.js","sourceRoot":"","sources":["../../src/commands/mermaid.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,OAAO,EAAE,iBAAiB,EAAE,MAAM,0BAA0B,CAAC;AAC7D,OAAO,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAC7C,OAAO,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AACpD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAC;AAWnE,MAAM,CAAC,KAAK,UAAU,UAAU,CAAC,QAAgB,EAAE,IAA2B;IAC5E,MAAM,IAAI,GAAG,MAAM,gBAAgB,CAAC,QAAQ,CAAC,CAAC;IAC9C,IAAI,CAAC,IAAI;QAAE,OAAO;IAElB,MAAM,eAAe,GAAG,IAAI,CAAC,mBAAmB;QAC9C,CAAC,CAAC,MAAM,sBAAsB,CAAC,IAAI,EAAE,EAAE,QAAQ,EAAE,IAAI,CAAC,QAAQ,EAAE,CAAC;QACjE,CAAC,CAAC,SAAS,CAAC;IAEd,gFAAgF;IAChF,MAAM,OAAO,GAAG,iBAAiB,CAAC,IAAI,EAAE;QACtC,QAAQ,EAAE,IAAI,CAAC,QAAQ;QACvB,eAAe;QACf,YAAY,EAAE,IAAI,CAAC,YAAY,KAAK,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,SAAS;KAC7D,CAAC,CAAC;IAEH,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;QACjB,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,CAAC;QACrC,OAAO;IACT,CAAC;IAED,MAAM,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;QACzC,CAAC,CAAC,kBAAkB,OAAO,YAAY;QACvC,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC;IACnB,MAAM,SAAS,CAAC,IAAI,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;IAC/C,OAAO,CAAC,KAAK,CAAC,8BAA8B,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;AAC7D,CAAC"}
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{"version":3,"file":"gxwf.d.ts","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;
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{"version":3,"file":"gxwf.d.ts","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA2FzC,wBAAgB,gBAAgB,IAAI,OAAO,CAE1C"}
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package/dist/programs/gxwf.js
CHANGED
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comments: opts.comments,
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annotateConnections: opts.annotateConnections,
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cacheDir: opts.cacheDir,
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draftOverlay: opts.draftOverlay,
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}),
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cytoscapeJs: (file, output, opts) => runCytoscapeJs(file, {
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annotateConnections: opts.annotateConnections,
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cacheDir: opts.cacheDir,
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layout: opts.layout,
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draftOverlay: opts.draftOverlay,
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}),
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validateTree: runValidateTree,
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lintTree: runLintTree,
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{"version":3,"file":"gxwf.js","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAOA,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AACzD,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,gCAAgC,CAAC;AAClE,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAC7D,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,oCAAoC,CAAC;AAC1E,OAAO,EAAE,qBAAqB,EAAE,MAAM,qCAAqC,CAAC;AAC5E,OAAO,EAAE,yBAAyB,EAAE,MAAM,0CAA0C,CAAC;AACrF,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAC3D,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAC3D,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,oBAAoB,EAAwB,MAAM,0BAA0B,CAAC;AACtF,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAE5C,MAAM,QAAQ,GAAoB;IAChC,gBAAgB,EAAE,mBAAmB;IACrC,aAAa,EAAE,gBAAgB;IAC/B,KAAK,EAAE,QAAQ;IACf,YAAY,EAAE,eAAe;IAC7B,aAAa,EAAE,gBAAgB;IAC/B,aAAa,EAAE,gBAAgB;IAC/B,IAAI,EAAE,OAAO;IACb,OAAO,EAAE,UAAU;IACnB,SAAS,EAAE,YAAY;IACvB,OAAO,EAAE,CACP,IAAY,EACZ,MAA0B,EAC1B,
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+
{"version":3,"file":"gxwf.js","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAOA,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AACzD,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,gCAAgC,CAAC;AAClE,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAC7D,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,oCAAoC,CAAC;AAC1E,OAAO,EAAE,qBAAqB,EAAE,MAAM,qCAAqC,CAAC;AAC5E,OAAO,EAAE,yBAAyB,EAAE,MAAM,0CAA0C,CAAC;AACrF,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAC3D,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAC3D,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,oBAAoB,EAAwB,MAAM,0BAA0B,CAAC;AACtF,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAE5C,MAAM,QAAQ,GAAoB;IAChC,gBAAgB,EAAE,mBAAmB;IACrC,aAAa,EAAE,gBAAgB;IAC/B,KAAK,EAAE,QAAQ;IACf,YAAY,EAAE,eAAe;IAC7B,aAAa,EAAE,gBAAgB;IAC/B,aAAa,EAAE,gBAAgB;IAC/B,IAAI,EAAE,OAAO;IACb,OAAO,EAAE,UAAU;IACnB,SAAS,EAAE,YAAY;IACvB,OAAO,EAAE,CACP,IAAY,EACZ,MAA0B,EAC1B,IAKC,EACD,EAAE,CACF,UAAU,CAAC,IAAI,EAAE;QACf,MAAM;QACN,QAAQ,EAAE,IAAI,CAAC,QAAQ;QACvB,mBAAmB,EAAE,IAAI,CAAC,mBAAmB;QAC7C,QAAQ,EAAE,IAAI,CAAC,QAAQ;QACvB,YAAY,EAAE,IAAI,CAAC,YAAY;KAChC,CAAC;IACJ,WAAW,EAAE,CACX,IAAY,EACZ,MAA0B,EAC1B,IAOC,EACD,EAAE,CACF,cAAc,CAAC,IAAI,EAAE;QACnB,MAAM;QACN,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,mBAAmB,EAAE,IAAI,CAAC,mBAAmB;QAC7C,QAAQ,EAAE,IAAI,CAAC,QAAQ;QACvB,MAAM,EAAE,IAAI,CAAC,MAAM;QACnB,YAAY,EAAE,IAAI,CAAC,YAAY;KAChC,CAAC;IACJ,YAAY,EAAE,eAAe;IAC7B,QAAQ,EAAE,WAAW;IACrB,SAAS,EAAE,YAAY;IACvB,WAAW,EAAE,cAAc;IAC3B,aAAa,EAAE,gBAAgB;IAC/B,iBAAiB,EAAE,oBAAoB;IACvC,kBAAkB,EAAE,qBAAqB;IACzC,sBAAsB,EAAE,yBAAyB;IACjD,UAAU,EAAE,aAAa;IACzB,YAAY,EAAE,eAAe;IAC7B,aAAa,EAAE,gBAAgB;IAC/B,UAAU,EAAE,aAAa;IACzB,gBAAgB,EAAE,mBAAmB;CACtC,CAAC;AAEF,MAAM,UAAU,gBAAgB;IAC9B,OAAO,oBAAoB,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;AAClD,CAAC"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@galaxy-tool-util/cli",
|
|
3
|
-
"version": "1.
|
|
3
|
+
"version": "1.9.0",
|
|
4
4
|
"description": "galaxy-tool-cache CLI — cache and inspect Galaxy tool metadata",
|
|
5
5
|
"type": "module",
|
|
6
6
|
"bin": {
|
|
@@ -39,10 +39,10 @@
|
|
|
39
39
|
"effect": "^3.21.0",
|
|
40
40
|
"nunjucks": "^3.2.4",
|
|
41
41
|
"yaml": "^2.8.3",
|
|
42
|
-
"@galaxy-tool-util/connection-validation": "1.
|
|
43
|
-
"@galaxy-tool-util/core": "1.
|
|
44
|
-
"@galaxy-tool-util/schema": "1.
|
|
45
|
-
"@galaxy-tool-util/search": "1.
|
|
42
|
+
"@galaxy-tool-util/connection-validation": "1.9.0",
|
|
43
|
+
"@galaxy-tool-util/core": "1.9.0",
|
|
44
|
+
"@galaxy-tool-util/schema": "1.9.0",
|
|
45
|
+
"@galaxy-tool-util/search": "1.9.0"
|
|
46
46
|
},
|
|
47
47
|
"devDependencies": {
|
|
48
48
|
"@types/node": "^25.5.0",
|
package/spec/gxwf.json
CHANGED
|
@@ -369,6 +369,10 @@
|
|
|
369
369
|
{
|
|
370
370
|
"flags": "--cache-dir <dir>",
|
|
371
371
|
"description": "Tool cache directory (used by --annotate-connections)"
|
|
372
|
+
},
|
|
373
|
+
{
|
|
374
|
+
"flags": "--no-draft-overlay",
|
|
375
|
+
"description": "Disable planned/concrete styling for draft workflows (render as plain)"
|
|
372
376
|
}
|
|
373
377
|
]
|
|
374
378
|
},
|
|
@@ -402,6 +406,10 @@
|
|
|
402
406
|
{
|
|
403
407
|
"flags": "--cache-dir <dir>",
|
|
404
408
|
"description": "Tool cache directory (used by --annotate-connections)"
|
|
409
|
+
},
|
|
410
|
+
{
|
|
411
|
+
"flags": "--no-draft-overlay",
|
|
412
|
+
"description": "Disable planned/concrete styling for draft workflows (render as plain)"
|
|
405
413
|
}
|
|
406
414
|
]
|
|
407
415
|
},
|