@galaxy-tool-util/cli 1.4.0 → 1.6.0

package/dist/commands/validate-tool-source-tree.js

@@ -0,0 +1,113 @@
+/**
+ * ``gxwf validate-tool-source-tree`` — batch-validate every user-defined tool
+ * source YAML under a directory. Discovery parses each candidate YAML and
+ * checks for ``class: GalaxyUserTool`` / ``class: GalaxyTool`` rather than
+ * relying on a filename suffix (UDTs don't have an established convention).
+ */
+import { readdir, readFile } from "node:fs/promises";
+import { join, relative } from "node:path";
+import { parse as parseYaml } from "yaml";
+import { validateUserToolSource } from "@galaxy-tool-util/schema";
+const EXCLUDE_DIRS = new Set([".git", ".hg", ".venv", "node_modules", "__pycache__", ".snakemake"]);
+const YAML_EXTS = [".yml", ".yaml"];
+const TOOL_CLASSES = new Set(["GalaxyUserTool", "GalaxyTool"]);
+function isYamlFile(name) {
+    return YAML_EXTS.some((e) => name.endsWith(e));
+}
+async function discoverYamlFiles(root) {
+    const out = [];
+    await walk(root, out);
+    out.sort();
+    return out;
+}
+async function walk(dir, out) {
+    let entries;
+    try {
+        entries = await readdir(dir, { withFileTypes: true });
+    }
+    catch {
+        return;
+    }
+    for (const entry of entries) {
+        if (entry.isDirectory()) {
+            if (!EXCLUDE_DIRS.has(entry.name)) {
+                await walk(join(dir, entry.name), out);
+            }
+            continue;
+        }
+        if (entry.isFile() && isYamlFile(entry.name)) {
+            out.push(join(dir, entry.name));
+        }
+    }
+}
+async function validateOne(path, root, schemaOnly) {
+    const rel = relative(root, path);
+    let parsed;
+    try {
+        const raw = await readFile(path, "utf-8");
+        parsed = parseYaml(raw);
+    }
+    catch (err) {
+        const msg = err instanceof Error ? err.message : String(err);
+        return {
+            path: rel,
+            valid: false,
+            loadError: true,
+            errors: [
+                { path: "(root)", message: `YAML parse error: ${msg}`, keyword: "yaml", params: {} },
+            ],
+        };
+    }
+    if (!parsed || typeof parsed !== "object" || Array.isArray(parsed)) {
+        return undefined;
+    }
+    const cls = parsed["class"];
+    if (typeof cls !== "string" || !TOOL_CLASSES.has(cls)) {
+        return undefined;
+    }
+    const { valid, errors } = validateUserToolSource(parsed, { schemaOnly });
+    return { path: rel, valid, errors };
+}
+export async function runValidateToolSourceTree(dir, opts = {}) {
+    const paths = await discoverYamlFiles(dir);
+    const files = [];
+    for (const p of paths) {
+        const result = await validateOne(p, dir, opts.schemaOnly === true);
+        if (result)
+            files.push(result);
+    }
+    const summary = {
+        total: files.length,
+        ok: files.filter((f) => f.valid).length,
+        fail: files.filter((f) => !f.valid && !f.loadError).length,
+        error: files.filter((f) => f.loadError).length,
+    };
+    const report = {
+        root: dir,
+        files: files.map(({ path, valid, errors }) => ({ path, valid, errors })),
+        summary,
+    };
+    if (opts.json) {
+        console.log(JSON.stringify(report, null, 2));
+    }
+    else {
+        for (const f of files) {
+            if (f.loadError) {
+                console.error(`  ${f.path}: ERROR (${f.errors[0]?.message ?? "load failed"})`);
+            }
+            else if (f.valid) {
+                console.log(`  ${f.path}: OK`);
+            }
+            else {
+                console.error(`  ${f.path}: ${f.errors.length} validation error(s)`);
+                for (const e of f.errors) {
+                    console.error(`    ${e.path}: ${e.message} [${e.keyword}]`);
+                }
+            }
+        }
+        const s = summary;
+        console.log(`\nSummary: ${s.total} files | ${s.ok} OK, ${s.fail} FAIL, ${s.error} ERROR`);
+    }
+    process.exitCode = summary.fail > 0 || summary.error > 0 ? 1 : 0;
+}
+//# sourceMappingURL=validate-tool-source-tree.js.map

package/dist/commands/validate-tool-source-tree.js.map

@@ -0,0 +1 @@
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package/dist/commands/validate-tool-source.d.ts

@@ -0,0 +1,20 @@
+/**
+ * ``gxwf validate-tool-source`` — validate a user-defined Galaxy tool source
+ * YAML file (``class: GalaxyUserTool`` / ``class: GalaxyTool``) against the
+ * JSON Schema synced from Galaxy's ``galaxy.tool_util_models.DynamicToolSources``
+ * Pydantic models, plus the semantic checks added in
+ * galaxyproject/galaxy#22615 (input refs, output discovery, citation shape,
+ * blank required fields).
+ */
+import { type UserToolSourceDiagnostic } from "@galaxy-tool-util/schema";
+export interface ValidateToolSourceOptions {
+    json?: boolean;
+    schemaOnly?: boolean;
+}
+export interface ValidateToolSourceReport {
+    file: string;
+    valid: boolean;
+    errors: UserToolSourceDiagnostic[];
+}
+export declare function runValidateToolSource(filePath: string, opts?: ValidateToolSourceOptions): Promise<void>;
+//# sourceMappingURL=validate-tool-source.d.ts.map

package/dist/commands/validate-tool-source.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/validate-tool-source.js

@@ -0,0 +1,52 @@
+/**
+ * ``gxwf validate-tool-source`` — validate a user-defined Galaxy tool source
+ * YAML file (``class: GalaxyUserTool`` / ``class: GalaxyTool``) against the
+ * JSON Schema synced from Galaxy's ``galaxy.tool_util_models.DynamicToolSources``
+ * Pydantic models, plus the semantic checks added in
+ * galaxyproject/galaxy#22615 (input refs, output discovery, citation shape,
+ * blank required fields).
+ */
+import { readFile } from "node:fs/promises";
+import { parse as parseYaml } from "yaml";
+import { validateUserToolSource } from "@galaxy-tool-util/schema";
+export async function runValidateToolSource(filePath, opts = {}) {
+    const raw = await readFile(filePath, "utf-8");
+    let parsed;
+    try {
+        parsed = parseYaml(raw);
+    }
+    catch (err) {
+        const msg = err instanceof Error ? err.message : String(err);
+        if (opts.json) {
+            const report = {
+                file: filePath,
+                valid: false,
+                errors: [
+                    { path: "(root)", message: `YAML parse error: ${msg}`, keyword: "yaml", params: {} },
+                ],
+            };
+            console.log(JSON.stringify(report, null, 2));
+        }
+        else {
+            console.error(`${filePath}: YAML parse error: ${msg}`);
+        }
+        process.exitCode = 2;
+        return;
+    }
+    const { valid, errors } = validateUserToolSource(parsed, { schemaOnly: opts.schemaOnly });
+    if (opts.json) {
+        const report = { file: filePath, valid, errors };
+        console.log(JSON.stringify(report, null, 2));
+    }
+    else if (valid) {
+        console.log(`${filePath}: OK`);
+    }
+    else {
+        console.error(`${filePath}: ${errors.length} validation error(s)`);
+        for (const e of errors) {
+            console.error(`  ${e.path}: ${e.message} [${e.keyword}]`);
+        }
+    }
+    process.exitCode = valid ? 0 : 1;
+}
+//# sourceMappingURL=validate-tool-source.js.map

package/dist/commands/validate-tool-source.js.map

@@ -0,0 +1 @@
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package/dist/commands/validate-workflow.d.ts.map

@@ -1 +1 @@
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package/dist/commands/validate-workflow.js

@@ -8,7 +8,7 @@ import { createDefaultResolver } from "./url-resolver.js";
 import { renderStepResults } from "./render-results.js";
 import { readWorkflowFile, resolveFormat } from "./workflow-io.js";
 import { resolveStrictOptions } from "./strict-options.js";
-import { writeReportHtml } from "./report-output.js";
+import { findStdoutSinkConflict, writeReportHtml } from "./report-output.js";
 import { buildConnectionReport } from "./connection-validation.js";
 function formatIssues(error) {
     const issues = ParseResult.ArrayFormatter.formatErrorSync(error);
@@ -27,6 +27,12 @@ export function decodeStructureErrors(data, format) {
     return [];
 }
 export async function runValidateWorkflow(filePath, opts) {
+    const conflict = findStdoutSinkConflict(opts);
+    if (conflict) {
+        console.error(conflict);
+        process.exitCode = 2;
+        return;
+    }
     const data = await readWorkflowFile(filePath);
     if (!data)
         return;

package/dist/commands/validate-workflow.js.map

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package/dist/index.d.ts

@@ -22,6 +22,12 @@ export type { ValidateTestsOptions, ValidateTestsReport } from "./commands/valid
 /** Batch-validate workflow-test files under a directory. */
 export { runValidateTestsTree } from "./commands/validate-tests-tree.js";
 export type { ValidateTestsTreeOptions, ValidateTestsTreeReport, } from "./commands/validate-tests-tree.js";
+/** Validate a user-defined Galaxy tool source YAML (class: GalaxyUserTool / GalaxyTool). */
+export { runValidateToolSource } from "./commands/validate-tool-source.js";
+export type { ValidateToolSourceOptions, ValidateToolSourceReport, } from "./commands/validate-tool-source.js";
+/** Batch-validate user-defined Galaxy tool source YAMLs under a directory. */
+export { runValidateToolSourceTree } from "./commands/validate-tool-source-tree.js";
+export type { ValidateToolSourceTreeOptions, ValidateToolSourceTreeReport, } from "./commands/validate-tool-source-tree.js";
 /** Clean a Galaxy workflow — strip stale keys and decode legacy encoding. */
 export { runClean } from "./commands/clean.js";
 /** Lint a Galaxy workflow — structural checks, best practices, tool state validation. */

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sEAAsE;AACtE,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAChE,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,8BAA8B,CAAC;AAC9F,4DAA4D;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AACzE,YAAY,EACV,wBAAwB,EACxB,uBAAuB,GACxB,MAAM,mCAAmC,CAAC;AAC3C,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AACjE,YAAY,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AACxE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAC5B,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACjG,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,4EAA4E;AAC5E,OAAO,EACL,mBAAmB,EACnB,oBAAoB,EACpB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,iCAAiC,CAAC;AACzC,kFAAkF;AAClF,OAAO,EAAE,yBAAyB,EAAE,MAAM,oCAAoC,CAAC;AAC/E,YAAY,EAAE,cAAc,EAAE,gBAAgB,EAAE,MAAM,oCAAoC,CAAC;AAC3F,wEAAwE;AACxE,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,gEAAgE;AAChE,OAAO,EACL,sBAAsB,EACtB,+BAA+B,EAC/B,uCAAuC,GACxC,MAAM,oCAAoC,CAAC;AAC5C,YAAY,EAAE,gBAAgB,EAAE,MAAM,oCAAoC,CAAC;AAC3E,6EAA6E;AAC7E,OAAO,EACL,6BAA6B,EAC7B,8BAA8B,EAC9B,+BAA+B,GAChC,MAAM,6CAA6C,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sEAAsE;AACtE,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAChE,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,8BAA8B,CAAC;AAC9F,4DAA4D;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AACzE,YAAY,EACV,wBAAwB,EACxB,uBAAuB,GACxB,MAAM,mCAAmC,CAAC;AAC3C,4FAA4F;AAC5F,OAAO,EAAE,qBAAqB,EAAE,MAAM,oCAAoC,CAAC;AAC3E,YAAY,EACV,yBAAyB,EACzB,wBAAwB,GACzB,MAAM,oCAAoC,CAAC;AAC5C,8EAA8E;AAC9E,OAAO,EAAE,yBAAyB,EAAE,MAAM,yCAAyC,CAAC;AACpF,YAAY,EACV,6BAA6B,EAC7B,4BAA4B,GAC7B,MAAM,yCAAyC,CAAC;AACjD,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AACjE,YAAY,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AACxE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAC5B,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACjG,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,4EAA4E;AAC5E,OAAO,EACL,mBAAmB,EACnB,oBAAoB,EACpB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,iCAAiC,CAAC;AACzC,kFAAkF;AAClF,OAAO,EAAE,yBAAyB,EAAE,MAAM,oCAAoC,CAAC;AAC/E,YAAY,EAAE,cAAc,EAAE,gBAAgB,EAAE,MAAM,oCAAoC,CAAC;AAC3F,wEAAwE;AACxE,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,gEAAgE;AAChE,OAAO,EACL,sBAAsB,EACtB,+BAA+B,EAC/B,uCAAuC,GACxC,MAAM,oCAAoC,CAAC;AAC5C,YAAY,EAAE,gBAAgB,EAAE,MAAM,oCAAoC,CAAC;AAC3E,6EAA6E;AAC7E,OAAO,EACL,6BAA6B,EAC7B,8BAA8B,EAC9B,+BAA+B,GAChC,MAAM,6CAA6C,CAAC"}

package/dist/index.js

@@ -20,6 +20,10 @@ export { runValidateWorkflow } from "./commands/validate-workflow.js";
 export { runValidateTests } from "./commands/validate-tests.js";
 /** Batch-validate workflow-test files under a directory. */
 export { runValidateTestsTree } from "./commands/validate-tests-tree.js";
+/** Validate a user-defined Galaxy tool source YAML (class: GalaxyUserTool / GalaxyTool). */
+export { runValidateToolSource } from "./commands/validate-tool-source.js";
+/** Batch-validate user-defined Galaxy tool source YAMLs under a directory. */
+export { runValidateToolSourceTree } from "./commands/validate-tool-source-tree.js";
 /** Clean a Galaxy workflow — strip stale keys and decode legacy encoding. */
 export { runClean } from "./commands/clean.js";
 /** Lint a Galaxy workflow — structural checks, best practices, tool state validation. */

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sEAAsE;AACtE,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAEhE,4DAA4D;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AAKzE,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAEjE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAE5B,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,4EAA4E;AAC5E,OAAO,EACL,mBAAmB,EACnB,oBAAoB,EACpB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,iCAAiC,CAAC;AACzC,kFAAkF;AAClF,OAAO,EAAE,yBAAyB,EAAE,MAAM,oCAAoC,CAAC;AAE/E,wEAAwE;AACxE,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,gEAAgE;AAChE,OAAO,EACL,sBAAsB,EACtB,+BAA+B,EAC/B,uCAAuC,GACxC,MAAM,oCAAoC,CAAC;AAE5C,6EAA6E;AAC7E,OAAO,EACL,6BAA6B,EAC7B,8BAA8B,EAC9B,+BAA+B,GAChC,MAAM,6CAA6C,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sEAAsE;AACtE,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAEhE,4DAA4D;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AAKzE,4FAA4F;AAC5F,OAAO,EAAE,qBAAqB,EAAE,MAAM,oCAAoC,CAAC;AAK3E,8EAA8E;AAC9E,OAAO,EAAE,yBAAyB,EAAE,MAAM,yCAAyC,CAAC;AAKpF,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAEjE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAE5B,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,4EAA4E;AAC5E,OAAO,EACL,mBAAmB,EACnB,oBAAoB,EACpB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,iCAAiC,CAAC;AACzC,kFAAkF;AAClF,OAAO,EAAE,yBAAyB,EAAE,MAAM,oCAAoC,CAAC;AAE/E,wEAAwE;AACxE,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,gEAAgE;AAChE,OAAO,EACL,sBAAsB,EACtB,+BAA+B,EAC/B,uCAAuC,GACxC,MAAM,oCAAoC,CAAC;AAE5C,6EAA6E;AAC7E,OAAO,EACL,6BAA6B,EAC7B,8BAA8B,EAC9B,+BAA+B,GAChC,MAAM,6CAA6C,CAAC"}

package/dist/meta/spec-types.d.ts

@@ -28,6 +28,8 @@ export interface SpecCommand {
     optionGroups?: string[];
     /** Key into the handler registry passed to `buildProgramFromSpec`. */
     handler: string;
+    /** When true, suppress this command from `--help` output. */
+    hidden?: boolean;
 }
 export interface ProgramSpec {
     name: string;

package/dist/meta/spec-types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"spec-types.d.ts","sourceRoot":"","sources":["../../src/meta/spec-types.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,MAAM,WAAW,UAAU;IACzB,gFAAgF;IAChF,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,EAAE,MAAM,CAAC;IACpB,iEAAiE;IACjE,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC;CAC5B;AAED,MAAM,WAAW,OAAO;IACtB,4EAA4E;IAC5E,GAAG,EAAE,MAAM,CAAC;IACZ,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,IAAI,CAAC,EAAE,OAAO,EAAE,CAAC;IACjB,OAAO,CAAC,EAAE,UAAU,EAAE,CAAC;IACvB,mFAAmF;IACnF,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,sEAAsE;IACtE,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,EAAE,MAAM,CAAC;IAChB,mFAAmF;IACnF,YAAY,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,UAAU,EAAE,CAAC,CAAC;IAC5C,QAAQ,EAAE,WAAW,EAAE,CAAC;CACzB"}
+{"version":3,"file":"spec-types.d.ts","sourceRoot":"","sources":["../../src/meta/spec-types.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,MAAM,WAAW,UAAU;IACzB,gFAAgF;IAChF,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,EAAE,MAAM,CAAC;IACpB,iEAAiE;IACjE,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC;CAC5B;AAED,MAAM,WAAW,OAAO;IACtB,4EAA4E;IAC5E,GAAG,EAAE,MAAM,CAAC;IACZ,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,IAAI,CAAC,EAAE,OAAO,EAAE,CAAC;IACjB,OAAO,CAAC,EAAE,UAAU,EAAE,CAAC;IACvB,mFAAmF;IACnF,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,sEAAsE;IACtE,OAAO,EAAE,MAAM,CAAC;IAChB,6DAA6D;IAC7D,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,EAAE,MAAM,CAAC;IAChB,mFAAmF;IACnF,YAAY,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,UAAU,EAAE,CAAC,CAAC;IAC5C,QAAQ,EAAE,WAAW,EAAE,CAAC;CACzB"}

package/dist/programs/gxwf.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"gxwf.d.ts","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAyEzC,wBAAgB,gBAAgB,IAAI,OAAO,CAE1C"}
+{"version":3,"file":"gxwf.d.ts","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAmFzC,wBAAgB,gBAAgB,IAAI,OAAO,CAE1C"}

package/dist/programs/gxwf.js

@@ -1,5 +1,8 @@
 import { runClean } from "../commands/clean.js";
 import { runCleanTree } from "../commands/clean-tree.js";
+import { runDraftExtract } from "../commands/draft-extract.js";
+import { runDraftNextStep } from "../commands/draft-next-step.js";
+import { runDraftValidate } from "../commands/draft-validate.js";
 import { runConvert } from "../commands/convert.js";
 import { runConvertTree } from "../commands/convert-tree.js";
 import { runRoundtrip } from "../commands/roundtrip.js";
@@ -11,6 +14,8 @@ import { runLintTree } from "../commands/lint-tree.js";
 import { runValidateWorkflow } from "../commands/validate-workflow.js";
 import { runValidateTests } from "../commands/validate-tests.js";
 import { runValidateTestsTree } from "../commands/validate-tests-tree.js";
+import { runValidateToolSource } from "../commands/validate-tool-source.js";
+import { runValidateToolSourceTree } from "../commands/validate-tool-source-tree.js";
 import { runValidateTree } from "../commands/validate-tree.js";
 import { runToolSearch } from "../commands/tool-search.js";
 import { runToolVersions } from "../commands/tool-versions.js";
@@ -23,6 +28,9 @@ const handlers = {
     validateWorkflow: runValidateWorkflow,
     validateTests: runValidateTests,
     clean: runClean,
+    draftExtract: runDraftExtract,
+    draftNextStep: runDraftNextStep,
+    draftValidate: runDraftValidate,
     lint: runLint,
     convert: runConvert,
     roundtrip: runRoundtrip,
@@ -46,6 +54,8 @@ const handlers = {
     convertTree: runConvertTree,
     roundtripTree: runRoundtripTree,
     validateTestsTree: runValidateTestsTree,
+    validateToolSource: runValidateToolSource,
+    validateToolSourceTree: runValidateToolSourceTree,
     toolSearch: runToolSearch,
     toolVersions: runToolVersions,
     toolRevisions: runToolRevisions,

package/dist/programs/gxwf.js.map

@@ -1 +1 @@
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package/dist/spec/build-program.js

@@ -11,7 +11,7 @@ export function buildProgramFromSpec(spec, handlers) {
     program.name(spec.name).description(spec.description).version(spec.version);
     const groups = spec.optionGroups ?? {};
     for (const cmd of spec.commands) {
-        program.addCommand(buildCommand(cmd, groups, handlers));
+        program.addCommand(buildCommand(cmd, groups, handlers), cmd.hidden ? { hidden: true } : {});
     }
     return program;
 }

package/dist/spec/build-program.js.map

@@ -1 +1 @@
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package/dist/workflow/_templates-bundled.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"_templates-bundled.d.ts","sourceRoot":"","sources":["../../src/workflow/_templates-bundled.ts"],"names":[],"mappings":"AACA,eAAO,MAAM,iBAAiB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAiUpD,CAAC"}
+{"version":3,"file":"_templates-bundled.d.ts","sourceRoot":"","sources":["../../src/workflow/_templates-bundled.ts"],"names":[],"mappings":"AACA,eAAO,MAAM,iBAAiB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAsbpD,CAAC"}

package/dist/workflow/_templates-bundled.js

@@ -142,6 +142,123 @@ All other workflows have no stale keys.
 | - | {{ step_label }} | error | - | {{ err }} |
 {%   endfor %}
 {% endfor %}
+{% endif %}
+`,
+    "draft_validate.md.j2": `{#-
+  Single-file report for \`\`gxwf draft-validate\`\`.
+
+  Context:
+    report — SingleDraftValidationReport from buildSingleDraftValidationReport
+    meta   — optional generated_at / tool_util_version (ignored here)
+-#}
+# Draft Workflow Validation Report
+
+Workflow: \`{{ report.workflow }}\`
+Status: {% if report.ok %}OK{% else %}FAIL{% endif %}
+Summary: {{ report.summary }}
+
+## Survey
+
+- Draft: {% if report.survey.is_draft %}yes{% else %}no{% endif %}
+- TODO sentinels: {{ report.survey.todo_count }} across {{ report.survey.todo_paths | length }} step path(s)
+- Steps with \`_plan_*\` fields: {{ report.survey.plan_step_paths | length }}
+
+{% if report.structure_errors | length > 0 %}
+## Structure Errors ({{ report.structure_errors | length }})
+
+{% for d in report.structure_errors %}
+- \`\`{% if d.path | length == 0 %}<workflow>{% else %}{{ d.path | join("/") }}{% endif %}\`\` — {{ d.message }}
+{% endfor %}
+
+{% endif %}
+{% if report.topology_errors | length > 0 %}
+## Topology Errors ({{ report.topology_errors | length }})
+
+{% for d in report.topology_errors %}
+- \`\`{% if d.path | length == 0 %}<workflow>{% else %}{{ d.path | join("/") }}{% endif %}\`\` — {{ d.message }}
+{% endfor %}
+
+{% endif %}
+{% if report.semantic_errors | length > 0 %}
+## Semantic Errors ({{ report.semantic_errors | length }})
+
+{% for d in report.semantic_errors %}
+- \`\`{% if d.path | length == 0 %}<workflow>{% else %}{{ d.path | join("/") }}{% endif %}\`\` — {{ d.message }}
+{% endfor %}
+
+{% endif %}
+{% if report.warnings | length > 0 %}
+## Warnings ({{ report.warnings | length }})
+
+{% for d in report.warnings %}
+- \`\`{% if d.path | length == 0 %}<workflow>{% else %}{{ d.path | join("/") }}{% endif %}\`\` — {{ d.message }}
+{% endfor %}
+
+{% endif %}
+{% if report.concrete %}
+## Concrete Subset Validation
+
+- Class after extract: \`{{ report.concrete.class_after }}\`
+{% if report.concrete.skipped_reason %}
+- Status: SKIPPED — {{ report.concrete.skipped_reason }}
+{% else %}
+- Status: {% if report.concrete.ok %}OK{% else %}FAIL{% endif %}
+
+{% if report.concrete.structure_errors | length > 0 %}
+### Structure Errors ({{ report.concrete.structure_errors | length }})
+
+{% for e in report.concrete.structure_errors %}
+- {{ e }}
+{% endfor %}
+
+{% endif %}
+{% if report.concrete.strict_structure_errors and report.concrete.strict_structure_errors | length > 0 %}
+### Strict-Structure Errors ({{ report.concrete.strict_structure_errors | length }})
+
+{% for e in report.concrete.strict_structure_errors %}
+- {{ e }}
+{% endfor %}
+
+{% endif %}
+{% if report.concrete.strict_encoding_errors and report.concrete.strict_encoding_errors | length > 0 %}
+### Strict-Encoding Errors ({{ report.concrete.strict_encoding_errors | length }})
+
+{% for e in report.concrete.strict_encoding_errors %}
+- {{ e }}
+{% endfor %}
+
+{% endif %}
+{% if report.concrete.strict_state_errors and report.concrete.strict_state_errors | length > 0 %}
+### Strict-State Errors ({{ report.concrete.strict_state_errors | length }})
+
+{% for e in report.concrete.strict_state_errors %}
+- {{ e }}
+{% endfor %}
+
+{% endif %}
+{% if report.concrete.tool_state %}
+### Tool State
+
+- Summary: {{ report.concrete.tool_state.summary.ok }} ok, {{ report.concrete.tool_state.summary.fail }} fail, {{ report.concrete.tool_state.summary.skip }} skip
+
+{% for r in report.concrete.tool_state.results %}
+{% if r.status != "ok" %}
+- \`\`{{ r.step }}\`\` ({{ r.tool_id }}) — \`{{ r.status }}\`
+{% for e in r.errors %}
+  - {{ e }}
+{% endfor %}
+{% endif %}
+{% endfor %}
+
+{% endif %}
+{% if report.concrete.connection_report %}
+### Connections
+
+- Status: {% if report.concrete.connection_report.valid %}OK{% else %}INVALID{% endif %} — {{ report.concrete.connection_report.summary.ok }} ok, {{ report.concrete.connection_report.summary.invalid }} invalid, {{ report.concrete.connection_report.summary.skip }} skip
+
+{% endif %}
+{% endif %}
+
 {% endif %}
 `,
     "export_tree.md.j2": `{#-

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