@galaxy-tool-util/cli 1.3.0 → 1.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/commands/structural-schema.js +1 -1
- package/dist/programs/galaxy-tool-cache.d.ts.map +1 -1
- package/dist/programs/galaxy-tool-cache.js +0 -2
- package/dist/programs/galaxy-tool-cache.js.map +1 -1
- package/dist/programs/gxwf.d.ts.map +1 -1
- package/dist/programs/gxwf.js +2 -0
- package/dist/programs/gxwf.js.map +1 -1
- package/package.json +1 -1
- package/spec/galaxy-tool-cache.json +0 -16
- package/spec/gxwf.json +16 -0
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* `
|
|
2
|
+
* `gxwf structural-schema` — export the structural JSON Schema
|
|
3
3
|
* for Galaxy workflow validation (gxformat2 or native).
|
|
4
4
|
*/
|
|
5
5
|
import { GalaxyWorkflowSchema, NativeGalaxyWorkflowSchema } from "@galaxy-tool-util/schema";
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"galaxy-tool-cache.d.ts","sourceRoot":"","sources":["../../src/programs/galaxy-tool-cache.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;
|
|
1
|
+
{"version":3,"file":"galaxy-tool-cache.d.ts","sourceRoot":"","sources":["../../src/programs/galaxy-tool-cache.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAqBzC,wBAAgB,2BAA2B,IAAI,OAAO,CAErD"}
|
|
@@ -5,7 +5,6 @@ import { runClear } from "../commands/clear.js";
|
|
|
5
5
|
import { runPopulateWorkflow } from "../commands/populate-workflow.js";
|
|
6
6
|
import { runSchema } from "../commands/schema.js";
|
|
7
7
|
import { runSummarize } from "../commands/summarize.js";
|
|
8
|
-
import { runStructuralSchema } from "../commands/structural-schema.js";
|
|
9
8
|
import { buildProgramFromSpec } from "../spec/build-program.js";
|
|
10
9
|
import { galaxyToolCacheSpec } from "../meta/specs.js";
|
|
11
10
|
const handlers = {
|
|
@@ -16,7 +15,6 @@ const handlers = {
|
|
|
16
15
|
schema: runSchema,
|
|
17
16
|
summarize: runSummarize,
|
|
18
17
|
populateWorkflow: runPopulateWorkflow,
|
|
19
|
-
structuralSchema: runStructuralSchema,
|
|
20
18
|
};
|
|
21
19
|
export function buildGalaxyToolCacheProgram() {
|
|
22
20
|
return buildProgramFromSpec(galaxyToolCacheSpec, handlers);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"galaxy-tool-cache.js","sourceRoot":"","sources":["../../src/programs/galaxy-tool-cache.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAC;AAC5C,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAClD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,OAAO,EAAE,
|
|
1
|
+
{"version":3,"file":"galaxy-tool-cache.js","sourceRoot":"","sources":["../../src/programs/galaxy-tool-cache.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAC;AAC5C,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAClD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,OAAO,EAAE,oBAAoB,EAAwB,MAAM,0BAA0B,CAAC;AACtF,OAAO,EAAE,mBAAmB,EAAE,MAAM,kBAAkB,CAAC;AAEvD,MAAM,QAAQ,GAAoB;IAChC,GAAG,EAAE,MAAM;IACX,IAAI,EAAE,OAAO;IACb,IAAI,EAAE,OAAO;IACb,KAAK,EAAE,QAAQ;IACf,MAAM,EAAE,SAAS;IACjB,SAAS,EAAE,YAAY;IACvB,gBAAgB,EAAE,mBAAmB;CACtC,CAAC;AAEF,MAAM,UAAU,2BAA2B;IACzC,OAAO,oBAAoB,CAAC,mBAAmB,EAAE,QAAQ,CAAC,CAAC;AAC7D,CAAC"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"gxwf.d.ts","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;
|
|
1
|
+
{"version":3,"file":"gxwf.d.ts","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAyEzC,wBAAgB,gBAAgB,IAAI,OAAO,CAE1C"}
|
package/dist/programs/gxwf.js
CHANGED
|
@@ -16,6 +16,7 @@ import { runToolSearch } from "../commands/tool-search.js";
|
|
|
16
16
|
import { runToolVersions } from "../commands/tool-versions.js";
|
|
17
17
|
import { runToolRevisions } from "../commands/tool-revisions.js";
|
|
18
18
|
import { runRepoSearch } from "../commands/repo-search.js";
|
|
19
|
+
import { runStructuralSchema } from "../commands/structural-schema.js";
|
|
19
20
|
import { buildProgramFromSpec } from "../spec/build-program.js";
|
|
20
21
|
import { gxwfSpec } from "../meta/specs.js";
|
|
21
22
|
const handlers = {
|
|
@@ -49,6 +50,7 @@ const handlers = {
|
|
|
49
50
|
toolVersions: runToolVersions,
|
|
50
51
|
toolRevisions: runToolRevisions,
|
|
51
52
|
repoSearch: runRepoSearch,
|
|
53
|
+
structuralSchema: runStructuralSchema,
|
|
52
54
|
};
|
|
53
55
|
export function buildGxwfProgram() {
|
|
54
56
|
return buildProgramFromSpec(gxwfSpec, handlers);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"gxwf.js","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAOA,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AACzD,OAAO,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAC7D,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,oCAAoC,CAAC;AAC1E,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAC3D,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAC3D,OAAO,EAAE,oBAAoB,EAAwB,MAAM,0BAA0B,CAAC;AACtF,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAE5C,MAAM,QAAQ,GAAoB;IAChC,gBAAgB,EAAE,mBAAmB;IACrC,aAAa,EAAE,gBAAgB;IAC/B,KAAK,EAAE,QAAQ;IACf,IAAI,EAAE,OAAO;IACb,OAAO,EAAE,UAAU;IACnB,SAAS,EAAE,YAAY;IACvB,OAAO,EAAE,CACP,IAAY,EACZ,MAA0B,EAC1B,IAA8E,EAC9E,EAAE,CACF,UAAU,CAAC,IAAI,EAAE;QACf,MAAM;QACN,QAAQ,EAAE,IAAI,CAAC,QAAQ;QACvB,mBAAmB,EAAE,IAAI,CAAC,mBAAmB;QAC7C,QAAQ,EAAE,IAAI,CAAC,QAAQ;KACxB,CAAC;IACJ,WAAW,EAAE,CACX,IAAY,EACZ,MAA0B,EAC1B,IAMC,EACD,EAAE,CACF,cAAc,CAAC,IAAI,EAAE;QACnB,MAAM;QACN,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,mBAAmB,EAAE,IAAI,CAAC,mBAAmB;QAC7C,QAAQ,EAAE,IAAI,CAAC,QAAQ;QACvB,MAAM,EAAE,IAAI,CAAC,MAAM;KACpB,CAAC;IACJ,YAAY,EAAE,eAAe;IAC7B,QAAQ,EAAE,WAAW;IACrB,SAAS,EAAE,YAAY;IACvB,WAAW,EAAE,cAAc;IAC3B,aAAa,EAAE,gBAAgB;IAC/B,iBAAiB,EAAE,oBAAoB;IACvC,UAAU,EAAE,aAAa;IACzB,YAAY,EAAE,eAAe;IAC7B,aAAa,EAAE,gBAAgB;IAC/B,UAAU,EAAE,aAAa;
|
|
1
|
+
{"version":3,"file":"gxwf.js","sourceRoot":"","sources":["../../src/programs/gxwf.ts"],"names":[],"mappings":"AAOA,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAChD,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AACzD,OAAO,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAC7D,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,oCAAoC,CAAC;AAC1E,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAC3D,OAAO,EAAE,eAAe,EAAE,MAAM,8BAA8B,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAC3D,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,oBAAoB,EAAwB,MAAM,0BAA0B,CAAC;AACtF,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAE5C,MAAM,QAAQ,GAAoB;IAChC,gBAAgB,EAAE,mBAAmB;IACrC,aAAa,EAAE,gBAAgB;IAC/B,KAAK,EAAE,QAAQ;IACf,IAAI,EAAE,OAAO;IACb,OAAO,EAAE,UAAU;IACnB,SAAS,EAAE,YAAY;IACvB,OAAO,EAAE,CACP,IAAY,EACZ,MAA0B,EAC1B,IAA8E,EAC9E,EAAE,CACF,UAAU,CAAC,IAAI,EAAE;QACf,MAAM;QACN,QAAQ,EAAE,IAAI,CAAC,QAAQ;QACvB,mBAAmB,EAAE,IAAI,CAAC,mBAAmB;QAC7C,QAAQ,EAAE,IAAI,CAAC,QAAQ;KACxB,CAAC;IACJ,WAAW,EAAE,CACX,IAAY,EACZ,MAA0B,EAC1B,IAMC,EACD,EAAE,CACF,cAAc,CAAC,IAAI,EAAE;QACnB,MAAM;QACN,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,mBAAmB,EAAE,IAAI,CAAC,mBAAmB;QAC7C,QAAQ,EAAE,IAAI,CAAC,QAAQ;QACvB,MAAM,EAAE,IAAI,CAAC,MAAM;KACpB,CAAC;IACJ,YAAY,EAAE,eAAe;IAC7B,QAAQ,EAAE,WAAW;IACrB,SAAS,EAAE,YAAY;IACvB,WAAW,EAAE,cAAc;IAC3B,aAAa,EAAE,gBAAgB;IAC/B,iBAAiB,EAAE,oBAAoB;IACvC,UAAU,EAAE,aAAa;IACzB,YAAY,EAAE,eAAe;IAC7B,aAAa,EAAE,gBAAgB;IAC/B,UAAU,EAAE,aAAa;IACzB,gBAAgB,EAAE,mBAAmB;CACtC,CAAC;AAEF,MAAM,UAAU,gBAAgB;IAC9B,OAAO,oBAAoB,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;AAClD,CAAC"}
|
package/package.json
CHANGED
|
@@ -156,22 +156,6 @@
|
|
|
156
156
|
"description": "Galaxy instance URL for fallback"
|
|
157
157
|
}
|
|
158
158
|
]
|
|
159
|
-
},
|
|
160
|
-
{
|
|
161
|
-
"name": "structural-schema",
|
|
162
|
-
"description": "Export the structural JSON Schema for Galaxy workflows",
|
|
163
|
-
"handler": "structuralSchema",
|
|
164
|
-
"options": [
|
|
165
|
-
{
|
|
166
|
-
"flags": "--format <fmt>",
|
|
167
|
-
"description": "Workflow format: format2 (default) or native",
|
|
168
|
-
"default": "format2"
|
|
169
|
-
},
|
|
170
|
-
{
|
|
171
|
-
"flags": "--output <file>",
|
|
172
|
-
"description": "Output file (default: stdout)"
|
|
173
|
-
}
|
|
174
|
-
]
|
|
175
159
|
}
|
|
176
160
|
]
|
|
177
161
|
}
|
package/spec/gxwf.json
CHANGED
|
@@ -688,6 +688,22 @@
|
|
|
688
688
|
"description": "Emit machine-readable JSON envelope"
|
|
689
689
|
}
|
|
690
690
|
]
|
|
691
|
+
},
|
|
692
|
+
{
|
|
693
|
+
"name": "structural-schema",
|
|
694
|
+
"description": "Export the structural JSON Schema for Galaxy workflows",
|
|
695
|
+
"handler": "structuralSchema",
|
|
696
|
+
"options": [
|
|
697
|
+
{
|
|
698
|
+
"flags": "--format <fmt>",
|
|
699
|
+
"description": "Workflow format: format2 (default) or native",
|
|
700
|
+
"default": "format2"
|
|
701
|
+
},
|
|
702
|
+
{
|
|
703
|
+
"flags": "--output <file>",
|
|
704
|
+
"description": "Output file (default: stdout)"
|
|
705
|
+
}
|
|
706
|
+
]
|
|
691
707
|
}
|
|
692
708
|
]
|
|
693
709
|
}
|