@galaxy-tool-util/cli 1.1.0 → 1.3.0

package/dist/commands/validate-workflow.js

@@ -9,6 +9,7 @@ import { renderStepResults } from "./render-results.js";
 import { readWorkflowFile, resolveFormat } from "./workflow-io.js";
 import { resolveStrictOptions } from "./strict-options.js";
 import { writeReportHtml } from "./report-output.js";
+import { buildConnectionReport } from "./connection-validation.js";
 function formatIssues(error) {
     const issues = ParseResult.ArrayFormatter.formatErrorSync(error);
     return issues.map((i) => `${i.path.join(".")}: ${i.message}`);
@@ -115,32 +116,66 @@ export async function runValidateWorkflow(filePath, opts) {
         }
     }
     const stateOk = !results.some((r) => r.status === "fail");
+    let connectionReport = null;
+    if (opts.connections) {
+        connectionReport = await buildConnectionReport(data, cache);
+    }
+    const connectionsOk = connectionReport === null || connectionReport.valid;
     if (opts.json || opts.reportHtml) {
         const report = buildSingleValidationReport(filePath, results, {
             structure_errors: structureErrors,
             encoding_errors: encodingErrors,
         });
+        if (connectionReport !== null) {
+            report.connection_report = connectionReport;
+        }
         if (opts.json) {
             console.log(JSON.stringify(report, null, 2));
         }
         await writeReportHtml("validate", report, opts.reportHtml);
-        process.exitCode = structOk && stateOk ? 0 : 1;
+        process.exitCode = structOk && stateOk && connectionsOk ? 0 : 1;
         return;
     }
     if (results.length === 0) {
         console.log("No tool steps to validate state for.");
-        process.exitCode = structOk ? 0 : 1;
+        if (connectionReport !== null)
+            printConnectionReport(connectionReport);
+        process.exitCode = structOk && connectionsOk ? 0 : 1;
         return;
     }
     const { validated, skipped } = renderStepResults(results);
     console.log(`\nTool state: ${validated} validated, ${skipped} skipped`);
+    if (connectionReport !== null)
+        printConnectionReport(connectionReport);
     // --- strict state: promote skips to failures ---
     if (strict.strictState && results.some((r) => r.status !== "ok" && r.status !== "fail")) {
         console.error("Strict state: skipped steps not allowed");
         process.exitCode = 2;
         return;
     }
-    process.exitCode = structOk && stateOk ? 0 : 1;
+    process.exitCode = structOk && stateOk && connectionsOk ? 0 : 1;
+}
+function printConnectionReport(report) {
+    const { ok = 0, invalid = 0, skip = 0 } = report.summary;
+    console.log(`\nConnections: ${report.valid ? "OK" : "INVALID"} — ${ok} ok, ${invalid} invalid, ${skip} skip`);
+    if (!report.has_details)
+        return;
+    for (const sr of report.step_results) {
+        if (sr.errors.length === 0 && sr.connections.every((c) => c.status === "ok"))
+            continue;
+        const label = sr.tool_id ? `${sr.step} (${sr.tool_id})` : sr.step;
+        console.log(`  step ${label}${sr.map_over ? ` [map_over=${sr.map_over}]` : ""}`);
+        for (const e of sr.errors)
+            console.log(`    error: ${e}`);
+        for (const cr of sr.connections) {
+            if (cr.status === "ok")
+                continue;
+            const arrow = `${cr.source_step}/${cr.source_output} -> ${cr.target_input}`;
+            console.log(`    ${cr.status}: ${arrow}`);
+            for (const e of cr.errors)
+                console.log(`      ${e}`);
+        }
+    }
 }
 // --- Native validation ---
 export async function validateNativeSteps(data, cache, prefix = "", expansionOpts) {

package/dist/commands/validate-workflow.js.map

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package/dist/index.d.ts

@@ -55,6 +55,9 @@ export { loadToolInputsForWorkflow } from "./commands/stateful-tool-inputs.js";
 export type { ToolLoadStatus, LoadedToolInputs } from "./commands/stateful-tool-inputs.js";
 /** Default subworkflow ref resolver (base64, TRS, HTTP, file paths). */
 export { createDefaultResolver } from "./commands/url-resolver.js";
+/** Build the edge-annotation lookup the visualizers consume. */
+export { resolveEdgeAnnotations, resolveEdgeAnnotationsWithCache, resolveEdgeAnnotationsAndSpecsWithCache, } from "./commands/annotate-connections.js";
+export type { ResolvedToolSpec } from "./commands/annotate-connections.js";
 /** JSON-Schema-based (AJV) step validation and structural error decoding. */
 export { validateNativeStepsJsonSchema, validateFormat2StepsJsonSchema, decodeStructureErrorsJsonSchema, } from "./commands/validate-workflow-json-schema.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sEAAsE;AACtE,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAChE,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,8BAA8B,CAAC;AAC9F,4DAA4D;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AACzE,YAAY,EACV,wBAAwB,EACxB,uBAAuB,GACxB,MAAM,mCAAmC,CAAC;AAC3C,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AACjE,YAAY,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AACxE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAC5B,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACjG,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,4EAA4E;AAC5E,OAAO,EACL,mBAAmB,EACnB,oBAAoB,EACpB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,iCAAiC,CAAC;AACzC,kFAAkF;AAClF,OAAO,EAAE,yBAAyB,EAAE,MAAM,oCAAoC,CAAC;AAC/E,YAAY,EAAE,cAAc,EAAE,gBAAgB,EAAE,MAAM,oCAAoC,CAAC;AAC3F,wEAAwE;AACxE,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,6EAA6E;AAC7E,OAAO,EACL,6BAA6B,EAC7B,8BAA8B,EAC9B,+BAA+B,GAChC,MAAM,6CAA6C,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sEAAsE;AACtE,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAChE,YAAY,EAAE,oBAAoB,EAAE,mBAAmB,EAAE,MAAM,8BAA8B,CAAC;AAC9F,4DAA4D;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AACzE,YAAY,EACV,wBAAwB,EACxB,uBAAuB,GACxB,MAAM,mCAAmC,CAAC;AAC3C,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AACjE,YAAY,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AACxE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAC5B,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACjG,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,4EAA4E;AAC5E,OAAO,EACL,mBAAmB,EACnB,oBAAoB,EACpB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,iCAAiC,CAAC;AACzC,kFAAkF;AAClF,OAAO,EAAE,yBAAyB,EAAE,MAAM,oCAAoC,CAAC;AAC/E,YAAY,EAAE,cAAc,EAAE,gBAAgB,EAAE,MAAM,oCAAoC,CAAC;AAC3F,wEAAwE;AACxE,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,gEAAgE;AAChE,OAAO,EACL,sBAAsB,EACtB,+BAA+B,EAC/B,uCAAuC,GACxC,MAAM,oCAAoC,CAAC;AAC5C,YAAY,EAAE,gBAAgB,EAAE,MAAM,oCAAoC,CAAC;AAC3E,6EAA6E;AAC7E,OAAO,EACL,6BAA6B,EAC7B,8BAA8B,EAC9B,+BAA+B,GAChC,MAAM,6CAA6C,CAAC"}

package/dist/index.js

@@ -50,6 +50,8 @@ export { validateNativeSteps, validateFormat2Steps, decodeStructureErrors, detec
 export { loadToolInputsForWorkflow } from "./commands/stateful-tool-inputs.js";
 /** Default subworkflow ref resolver (base64, TRS, HTTP, file paths). */
 export { createDefaultResolver } from "./commands/url-resolver.js";
+/** Build the edge-annotation lookup the visualizers consume. */
+export { resolveEdgeAnnotations, resolveEdgeAnnotationsWithCache, resolveEdgeAnnotationsAndSpecsWithCache, } from "./commands/annotate-connections.js";
 /** JSON-Schema-based (AJV) step validation and structural error decoding. */
 export { validateNativeStepsJsonSchema, validateFormat2StepsJsonSchema, decodeStructureErrorsJsonSchema, } from "./commands/validate-workflow-json-schema.js";
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sEAAsE;AACtE,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAEhE,4DAA4D;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AAKzE,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAEjE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAE5B,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,4EAA4E;AAC5E,OAAO,EACL,mBAAmB,EACnB,oBAAoB,EACpB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,iCAAiC,CAAC;AACzC,kFAAkF;AAClF,OAAO,EAAE,yBAAyB,EAAE,MAAM,oCAAoC,CAAC;AAE/E,wEAAwE;AACxE,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,6EAA6E;AAC7E,OAAO,EACL,6BAA6B,EAC7B,8BAA8B,EAC9B,+BAA+B,GAChC,MAAM,6CAA6C,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sEAAsE;AACtE,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAEhE,4DAA4D;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AAKzE,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAEjE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAE5B,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,4EAA4E;AAC5E,OAAO,EACL,mBAAmB,EACnB,oBAAoB,EACpB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,iCAAiC,CAAC;AACzC,kFAAkF;AAClF,OAAO,EAAE,yBAAyB,EAAE,MAAM,oCAAoC,CAAC;AAE/E,wEAAwE;AACxE,OAAO,EAAE,qBAAqB,EAAE,MAAM,4BAA4B,CAAC;AACnE,gEAAgE;AAChE,OAAO,EACL,sBAAsB,EACtB,+BAA+B,EAC/B,uCAAuC,GACxC,MAAM,oCAAoC,CAAC;AAE5C,6EAA6E;AAC7E,OAAO,EACL,6BAA6B,EAC7B,8BAA8B,EAC9B,+BAA+B,GAChC,MAAM,6CAA6C,CAAC"}

package/dist/meta/extract-spec.d.ts

@@ -0,0 +1,13 @@
+/**
+ * Browser-safe derivation of the parsed `CliProgramSpec` view from a
+ * `ProgramSpec`. Replicates commander's flag-string parsing without
+ * importing commander, so the `meta` subpath stays node-free.
+ *
+ * Kept in sync with `meta-build.ts` (the commander-walking variant) by
+ * the spec parity test — both must produce identical output for any
+ * spec covered by the live in-code program.
+ */
+import type { CliProgramSpec } from "./types.js";
+import type { ProgramSpec } from "./spec-types.js";
+export declare function extractProgramFromSpec(spec: ProgramSpec): CliProgramSpec;
+//# sourceMappingURL=extract-spec.d.ts.map

package/dist/meta/extract-spec.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"extract-spec.d.ts","sourceRoot":"","sources":["../../src/meta/extract-spec.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AACH,OAAO,KAAK,EAIV,cAAc,EACf,MAAM,YAAY,CAAC;AACpB,OAAO,KAAK,EAAE,WAAW,EAAoC,MAAM,iBAAiB,CAAC;AAErF,wBAAgB,sBAAsB,CAAC,IAAI,EAAE,WAAW,GAAG,cAAc,CAQxE"}

package/dist/meta/extract-spec.js

@@ -0,0 +1,90 @@
+export function extractProgramFromSpec(spec) {
+    const groups = spec.optionGroups ?? {};
+    return {
+        name: spec.name,
+        description: spec.description,
+        version: spec.version,
+        commands: spec.commands.map((c) => extractCommand(c, spec.name, groups)),
+    };
+}
+function extractCommand(cmd, parentPath, groups) {
+    const fullName = `${parentPath} ${cmd.name}`.trim();
+    const args = (cmd.args ?? []).map(extractArg);
+    const options = [
+        ...(cmd.options ?? []).map(extractOption),
+        ...(cmd.optionGroups ?? []).flatMap((g) => (groups[g] ?? []).map(extractOption)),
+    ];
+    return {
+        name: cmd.name,
+        fullName,
+        description: cmd.description,
+        synopsis: `${fullName} ${synopsisSuffix(args, options)}`.trim(),
+        args,
+        options,
+        commands: [],
+    };
+}
+function extractArg(arg) {
+    // Match commander's `Argument(name)` parser: strips `<>`/`[]` and trailing `...`.
+    const raw = arg.raw;
+    const inner = raw.replace(/^[<[]|[>\]]$/g, "");
+    const variadic = inner.endsWith("...");
+    const name = (variadic ? inner.slice(0, -3) : inner).trim();
+    const required = raw.startsWith("<");
+    return {
+        raw: name,
+        name,
+        required,
+        variadic,
+        description: arg.description ?? undefined,
+    };
+}
+function extractOption(opt) {
+    const flags = opt.flags;
+    const tokens = flags.split(/[ ,|]+/).filter(Boolean);
+    const short = tokens.find((t) => /^-[^-]/.test(t));
+    const long = tokens.find((t) => t.startsWith("--"));
+    const placeholder = matchPlaceholder(flags);
+    const negatable = long?.startsWith("--no-") ?? false;
+    return {
+        flags,
+        name: attributeNameFromFlags(flags),
+        short: short || undefined,
+        description: opt.description,
+        takesArgument: placeholder !== undefined,
+        argumentPlaceholder: placeholder,
+        optionalArgument: placeholder?.startsWith("[") ?? false,
+        negatable,
+        defaultValue: opt.default,
+    };
+}
+function matchPlaceholder(flags) {
+    const m = flags.match(/[<[][^>\]]+[>\]]/);
+    return m ? m[0] : undefined;
+}
+/**
+ * Replicates commander's `Option.attributeName()`: takes the long flag
+ * (or short if no long), strips `--no-`, camelCases.
+ */
+function attributeNameFromFlags(flags) {
+    const tokens = flags.split(/[ ,|]+/).filter(Boolean);
+    const long = tokens.find((t) => t.startsWith("--"));
+    const base = long ?? tokens.find((t) => t.startsWith("-")) ?? flags;
+    const stripped = base.replace(/^--(no-)?/, "").replace(/^-/, "");
+    return stripped.replace(/-([a-z])/g, (_m, c) => c.toUpperCase());
+}
+/**
+ * Reproduces commander's `Command.usage()` for the leaf-command shape
+ * used here: `[options] <required> [optional]`.
+ */
+function synopsisSuffix(args, options) {
+    const parts = [];
+    if (options.length > 0)
+        parts.push("[options]");
+    for (const a of args) {
+        const inner = a.variadic ? `${a.name}...` : a.name;
+        parts.push(a.required ? `<${inner}>` : `[${inner}]`);
+    }
+    return parts.join(" ");
+}
+//# sourceMappingURL=extract-spec.js.map

package/dist/meta/extract-spec.js.map

@@ -0,0 +1 @@
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package/dist/meta/index.d.ts

@@ -0,0 +1,8 @@
+export type { CliProgramSpec, CliCommandSpec, CliOptionSpec, CliPositionalArgSpec, } from "./types.js";
+export type { ProgramSpec, SpecCommand, SpecOption, SpecArg } from "./spec-types.js";
+/** Raw spec — same shape consumers can load from `spec/*.json` directly. */
+export { gxwfSpec, galaxyToolCacheSpec } from "./specs.js";
+/** Parsed `CliProgramSpec` view derived from the raw spec. */
+export declare const gxwfCliMeta: import("./types.js").CliProgramSpec;
+export declare const galaxyToolCacheCliMeta: import("./types.js").CliProgramSpec;
+//# sourceMappingURL=index.d.ts.map

package/dist/meta/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/meta/index.ts"],"names":[],"mappings":"AAgBA,YAAY,EACV,cAAc,EACd,cAAc,EACd,aAAa,EACb,oBAAoB,GACrB,MAAM,YAAY,CAAC;AAEpB,YAAY,EAAE,WAAW,EAAE,WAAW,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAErF,4EAA4E;AAC5E,OAAO,EAAE,QAAQ,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAE3D,8DAA8D;AAC9D,eAAO,MAAM,WAAW,qCAAmC,CAAC;AAC5D,eAAO,MAAM,sBAAsB,qCAA8C,CAAC"}

package/dist/meta/index.js

@@ -0,0 +1,21 @@
+/**
+ * @module @galaxy-tool-util/cli/meta
+ *
+ * Browser-safe CLI metadata for the `gxwf` and `galaxy-tool-cache`
+ * programs. Consumers (Galaxy Workflow Foundry site, casting bundles)
+ * import this subpath without dragging in commander or any node-only
+ * dependency.
+ *
+ * Source of truth lives in `spec/*.json`. This module imports those
+ * specs directly and derives the parsed `CliProgramSpec` view via the
+ * commander-free walker in `spec/extract-spec.ts`. No build-time
+ * codegen — the spec ships as data and is interpreted at module load.
+ */
+import { extractProgramFromSpec } from "./extract-spec.js";
+import { gxwfSpec, galaxyToolCacheSpec } from "./specs.js";
+/** Raw spec — same shape consumers can load from `spec/*.json` directly. */
+export { gxwfSpec, galaxyToolCacheSpec } from "./specs.js";
+/** Parsed `CliProgramSpec` view derived from the raw spec. */
+export const gxwfCliMeta = extractProgramFromSpec(gxwfSpec);
+export const galaxyToolCacheCliMeta = extractProgramFromSpec(galaxyToolCacheSpec);
+//# sourceMappingURL=index.js.map

package/dist/meta/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/meta/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AACH,OAAO,EAAE,sBAAsB,EAAE,MAAM,mBAAmB,CAAC;AAC3D,OAAO,EAAE,QAAQ,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAW3D,4EAA4E;AAC5E,OAAO,EAAE,QAAQ,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAC;AAE3D,8DAA8D;AAC9D,MAAM,CAAC,MAAM,WAAW,GAAG,sBAAsB,CAAC,QAAQ,CAAC,CAAC;AAC5D,MAAM,CAAC,MAAM,sBAAsB,GAAG,sBAAsB,CAAC,mBAAmB,CAAC,CAAC"}

package/dist/meta/spec-types.d.ts

@@ -0,0 +1,40 @@
+/**
+ * Types for the declarative CLI spec — the source of truth for the
+ * `gxwf` and `galaxy-tool-cache` programs. Specs live in `spec/*.yml`
+ * and are loaded into commander at runtime by `build-program.ts`.
+ *
+ * Keep this aligned with `meta/types.ts` (which describes the *extracted*
+ * shape after commander has parsed flag strings). Spec carries raw
+ * commander-style flag strings; meta carries the parsed view.
+ */
+export interface SpecOption {
+    /** Raw commander flag string, e.g. `--cache-dir <dir>` or `--no-tool-state`. */
+    flags: string;
+    description: string;
+    /** Commander default; passed as the third arg to `.option()`. */
+    default?: string | boolean;
+}
+export interface SpecArg {
+    /** Raw commander argument form, e.g. `<file>`, `[output]`, `[items...]`. */
+    raw: string;
+    description?: string;
+}
+export interface SpecCommand {
+    name: string;
+    description: string;
+    args?: SpecArg[];
+    options?: SpecOption[];
+    /** Names of shared option groups (resolved against `ProgramSpec.optionGroups`). */
+    optionGroups?: string[];
+    /** Key into the handler registry passed to `buildProgramFromSpec`. */
+    handler: string;
+}
+export interface ProgramSpec {
+    name: string;
+    description: string;
+    version: string;
+    /** Reusable option groups (e.g. `strict` for the four strict-validation flags). */
+    optionGroups?: Record<string, SpecOption[]>;
+    commands: SpecCommand[];
+}
+//# sourceMappingURL=spec-types.d.ts.map

package/dist/meta/spec-types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"spec-types.d.ts","sourceRoot":"","sources":["../../src/meta/spec-types.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,MAAM,WAAW,UAAU;IACzB,gFAAgF;IAChF,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,EAAE,MAAM,CAAC;IACpB,iEAAiE;IACjE,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC;CAC5B;AAED,MAAM,WAAW,OAAO;IACtB,4EAA4E;IAC5E,GAAG,EAAE,MAAM,CAAC;IACZ,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,IAAI,CAAC,EAAE,OAAO,EAAE,CAAC;IACjB,OAAO,CAAC,EAAE,UAAU,EAAE,CAAC;IACvB,mFAAmF;IACnF,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,sEAAsE;IACtE,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,EAAE,MAAM,CAAC;IAChB,mFAAmF;IACnF,YAAY,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,UAAU,EAAE,CAAC,CAAC;IAC5C,QAAQ,EAAE,WAAW,EAAE,CAAC;CACzB"}

package/dist/meta/spec-types.js

@@ -0,0 +1,11 @@
+/**
+ * Types for the declarative CLI spec — the source of truth for the
+ * `gxwf` and `galaxy-tool-cache` programs. Specs live in `spec/*.yml`
+ * and are loaded into commander at runtime by `build-program.ts`.
+ *
+ * Keep this aligned with `meta/types.ts` (which describes the *extracted*
+ * shape after commander has parsed flag strings). Spec carries raw
+ * commander-style flag strings; meta carries the parsed view.
+ */
+export {};
+//# sourceMappingURL=spec-types.js.map

package/dist/meta/spec-types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"spec-types.js","sourceRoot":"","sources":["../../src/meta/spec-types.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG"}

package/dist/meta/specs.d.ts

@@ -0,0 +1,4 @@
+import type { ProgramSpec } from "./spec-types.js";
+export declare const gxwfSpec: ProgramSpec;
+export declare const galaxyToolCacheSpec: ProgramSpec;
+//# sourceMappingURL=specs.d.ts.map

package/dist/meta/specs.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"specs.d.ts","sourceRoot":"","sources":["../../src/meta/specs.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AAEnD,eAAO,MAAM,QAAQ,EAAW,WAAW,CAAC;AAC5C,eAAO,MAAM,mBAAmB,EAAsB,WAAW,CAAC"}

package/dist/meta/specs.js

@@ -0,0 +1,10 @@
+/**
+ * Static imports of the JSON specs. Single import site so consumers
+ * (program builders, browser-safe meta) share one parsed-and-typed
+ * view of the spec data.
+ */
+import gxwf from "../../spec/gxwf.json" with { type: "json" };
+import galaxyToolCache from "../../spec/galaxy-tool-cache.json" with { type: "json" };
+export const gxwfSpec = gxwf;
+export const galaxyToolCacheSpec = galaxyToolCache;
+//# sourceMappingURL=specs.js.map

package/dist/meta/specs.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"specs.js","sourceRoot":"","sources":["../../src/meta/specs.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,IAAI,MAAM,sBAAsB,CAAC,OAAO,IAAI,EAAE,MAAM,EAAE,CAAC;AAC9D,OAAO,eAAe,MAAM,mCAAmC,CAAC,OAAO,IAAI,EAAE,MAAM,EAAE,CAAC;AAGtF,MAAM,CAAC,MAAM,QAAQ,GAAG,IAAmB,CAAC;AAC5C,MAAM,CAAC,MAAM,mBAAmB,GAAG,eAA8B,CAAC"}

package/dist/meta/types.d.ts

@@ -0,0 +1,55 @@
+/**
+ * Browser-safe type definitions for CLI program metadata.
+ *
+ * No runtime imports — pure types. Everything in `src/meta/` must remain
+ * importable in a browser environment without polyfills. Enforced by
+ * `test/meta-browser-safe.test.ts`.
+ */
+export interface CliOptionSpec {
+    /** Long flag form, e.g. `--json` or `--cache-dir <dir>`. */
+    flags: string;
+    /** First long-form name without leading dashes or argument placeholder, e.g. `cache-dir`. */
+    name: string;
+    /** Short flag if present, e.g. `-j`. */
+    short?: string;
+    description: string;
+    /** True when the flag itself takes an argument (`--foo <bar>`). */
+    takesArgument: boolean;
+    /** Optional argument placeholder text (`<dir>`, `[file]`). */
+    argumentPlaceholder?: string;
+    /** True for `[file]`-style optional arguments on the flag. */
+    optionalArgument: boolean;
+    /** True for negated boolean flags (`--no-tool-state`). */
+    negatable: boolean;
+    /** Default value, if commander recorded one. */
+    defaultValue?: string | number | boolean;
+}
+export interface CliPositionalArgSpec {
+    /** Argument name as declared, e.g. `<file>` or `[output]`. */
+    raw: string;
+    /** Name without brackets. */
+    name: string;
+    required: boolean;
+    variadic: boolean;
+    description?: string;
+}
+export interface CliCommandSpec {
+    /** Command name as registered with commander (the leaf, no parent prefix). */
+    name: string;
+    /** Full path including parent program, e.g. `gxwf validate`. */
+    fullName: string;
+    description: string;
+    /** Synopsis line, e.g. `gxwf validate <file> [options]`. */
+    synopsis: string;
+    args: CliPositionalArgSpec[];
+    options: CliOptionSpec[];
+    /** Subcommands, if this command groups others. */
+    commands: CliCommandSpec[];
+}
+export interface CliProgramSpec {
+    name: string;
+    description: string;
+    version: string;
+    commands: CliCommandSpec[];
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/meta/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/meta/types.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,MAAM,WAAW,aAAa;IAC5B,4DAA4D;IAC5D,KAAK,EAAE,MAAM,CAAC;IACd,6FAA6F;IAC7F,IAAI,EAAE,MAAM,CAAC;IACb,wCAAwC;IACxC,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,WAAW,EAAE,MAAM,CAAC;IACpB,mEAAmE;IACnE,aAAa,EAAE,OAAO,CAAC;IACvB,8DAA8D;IAC9D,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,8DAA8D;IAC9D,gBAAgB,EAAE,OAAO,CAAC;IAC1B,0DAA0D;IAC1D,SAAS,EAAE,OAAO,CAAC;IACnB,gDAAgD;IAChD,YAAY,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC;CAC1C;AAED,MAAM,WAAW,oBAAoB;IACnC,8DAA8D;IAC9D,GAAG,EAAE,MAAM,CAAC;IACZ,6BAA6B;IAC7B,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,OAAO,CAAC;IAClB,QAAQ,EAAE,OAAO,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,cAAc;IAC7B,8EAA8E;IAC9E,IAAI,EAAE,MAAM,CAAC;IACb,gEAAgE;IAChE,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC;IACpB,4DAA4D;IAC5D,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,oBAAoB,EAAE,CAAC;IAC7B,OAAO,EAAE,aAAa,EAAE,CAAC;IACzB,kDAAkD;IAClD,QAAQ,EAAE,cAAc,EAAE,CAAC;CAC5B;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE,cAAc,EAAE,CAAC;CAC5B"}

package/dist/meta/types.js

@@ -0,0 +1,9 @@
+/**
+ * Browser-safe type definitions for CLI program metadata.
+ *
+ * No runtime imports — pure types. Everything in `src/meta/` must remain
+ * importable in a browser environment without polyfills. Enforced by
+ * `test/meta-browser-safe.test.ts`.
+ */
+export {};
+//# sourceMappingURL=types.js.map

package/dist/meta/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/meta/types.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG"}

package/dist/meta-build.d.ts

@@ -0,0 +1,13 @@
+/**
+ * Walks a Commander program and produces a `CliProgramSpec`.
+ *
+ * NODE-ONLY: imports `commander`. Kept as the commander-derived oracle
+ * for the spec parity test, which asserts that `extractProgramFromSpec`
+ * (browser-safe, in `src/meta/`) produces identical output. Lives
+ * outside `src/meta/` so the published `meta` subpath stays free of
+ * commander.
+ */
+import type { Command } from "commander";
+import type { CliProgramSpec } from "./meta/types.js";
+export declare function extractProgram(program: Command): CliProgramSpec;
+//# sourceMappingURL=meta-build.d.ts.map

package/dist/meta-build.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"meta-build.d.ts","sourceRoot":"","sources":["../src/meta-build.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AACH,OAAO,KAAK,EAAE,OAAO,EAAoB,MAAM,WAAW,CAAC;AAC3D,OAAO,KAAK,EAIV,cAAc,EACf,MAAM,iBAAiB,CAAC;AAEzB,wBAAgB,cAAc,CAAC,OAAO,EAAE,OAAO,GAAG,cAAc,CAO/D"}

package/dist/meta-build.js

@@ -0,0 +1,60 @@
+export function extractProgram(program) {
+    return {
+        name: program.name(),
+        description: program.description(),
+        version: program.version() ?? "",
+        commands: program.commands.map((c) => extractCommand(c, program.name())),
+    };
+}
+function extractCommand(cmd, parentPath) {
+    const name = cmd.name();
+    const fullName = `${parentPath} ${name}`.trim();
+    return {
+        name,
+        fullName,
+        description: cmd.description(),
+        synopsis: `${fullName} ${cmd.usage()}`.trim(),
+        args: cmd.registeredArguments.map(extractArg),
+        options: cmd.options.map(extractOption),
+        commands: cmd.commands.map((c) => extractCommand(c, fullName)),
+    };
+}
+function extractArg(arg) {
+    return {
+        raw: arg.name(),
+        name: arg.name(),
+        required: arg.required,
+        variadic: arg.variadic,
+        description: arg.description || undefined,
+    };
+}
+function extractOption(opt) {
+    const flags = opt.flags;
+    const name = opt.attributeName();
+    const short = opt.short || undefined;
+    const placeholder = extractPlaceholder(flags);
+    return {
+        flags,
+        name,
+        short,
+        description: opt.description,
+        takesArgument: placeholder !== undefined,
+        argumentPlaceholder: placeholder,
+        optionalArgument: placeholder?.startsWith("[") ?? false,
+        negatable: opt.long?.startsWith("--no-") ?? false,
+        defaultValue: serializableDefault(opt.defaultValue),
+    };
+}
+function extractPlaceholder(flags) {
+    const match = flags.match(/[<[][^>\]]+[>\]]/);
+    return match ? match[0] : undefined;
+}
+function serializableDefault(value) {
+    if (value === undefined || value === null)
+        return undefined;
+    if (typeof value === "string" || typeof value === "number" || typeof value === "boolean") {
+        return value;
+    }
+    return undefined;
+}
+//# sourceMappingURL=meta-build.js.map

package/dist/meta-build.js.map

@@ -0,0 +1 @@
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package/dist/programs/galaxy-tool-cache.d.ts

@@ -1,3 +1,7 @@
-import { Command } from "commander";
+/**
+ * `galaxy-tool-cache` commander program — built at runtime from
+ * `spec/galaxy-tool-cache.json` plus the handler registry below.
+ */
+import type { Command } from "commander";
 export declare function buildGalaxyToolCacheProgram(): Command;
 //# sourceMappingURL=galaxy-tool-cache.d.ts.map

package/dist/programs/galaxy-tool-cache.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"galaxy-tool-cache.d.ts","sourceRoot":"","sources":["../../src/programs/galaxy-tool-cache.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAuBzC,wBAAgB,2BAA2B,IAAI,OAAO,CAErD"}