@galaxy-tool-util/cli 0.4.0 → 1.0.0

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Files changed (10) hide show
  1. package/dist/bin/gxwf.js +8 -0
  2. package/dist/bin/gxwf.js.map +1 -1
  3. package/dist/commands/mermaid.d.ts +6 -0
  4. package/dist/commands/mermaid.d.ts.map +1 -0
  5. package/dist/commands/mermaid.js +22 -0
  6. package/dist/commands/mermaid.js.map +1 -0
  7. package/dist/commands/resolve-tool.d.ts +2 -1
  8. package/dist/commands/resolve-tool.d.ts.map +1 -1
  9. package/dist/commands/resolve-tool.js.map +1 -1
  10. package/package.json +3 -3
package/dist/bin/gxwf.js CHANGED
@@ -7,6 +7,7 @@ import { runConvertTree } from "../commands/convert-tree.js";
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  import { runRoundtrip } from "../commands/roundtrip.js";
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  import { runRoundtripTree } from "../commands/roundtrip-tree.js";
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  import { runLint } from "../commands/lint.js";
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+ import { runMermaid } from "../commands/mermaid.js";
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  import { runLintTree } from "../commands/lint-tree.js";
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  import { runValidateWorkflow } from "../commands/validate-workflow.js";
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  import { runValidateTests } from "../commands/validate-tests.js";
@@ -79,6 +80,13 @@ addStrictOptions(program
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  .option("--errors-only", "Suppress benign diffs and clean steps from output")
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  .option("--benign-only", "Show only steps with benign diffs (no errors, no failures)")
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  .option("--brief", "Omit per-diff list; show only the one-line summary")).action(runRoundtrip);
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+ program
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+ .command("mermaid")
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+ .description("Render a Galaxy workflow as a Mermaid flowchart diagram")
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+ .argument("<file>", "Workflow file (.ga, .gxwf.yml)")
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+ .argument("[output]", "Output path (.mmd for raw, .md for fenced code block); stdout if omitted")
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+ .option("--comments", "Render frame comments as Mermaid subgraphs")
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+ .action((file, output, opts) => runMermaid(file, { output, comments: opts.comments }));
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  // -- Tree (batch) variants --
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  addStrictOptions(program
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  .command("validate-tree")
package/dist/bin/gxwf.js.map CHANGED
@@ -1 +1 @@
1
- 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1
+ 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package/dist/commands/mermaid.d.ts ADDED
@@ -0,0 +1,6 @@
1
+ export interface MermaidCommandOptions {
2
+ output?: string;
3
+ comments?: boolean;
4
+ }
5
+ export declare function runMermaid(filePath: string, opts: MermaidCommandOptions): Promise<void>;
6
+ //# sourceMappingURL=mermaid.d.ts.map
package/dist/commands/mermaid.d.ts.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"mermaid.d.ts","sourceRoot":"","sources":["../../src/commands/mermaid.ts"],"names":[],"mappings":"AAOA,MAAM,WAAW,qBAAqB;IACpC,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAED,wBAAsB,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,qBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CAgB7F"}
package/dist/commands/mermaid.js ADDED
@@ -0,0 +1,22 @@
1
+ /**
2
+ * `gxwf mermaid` — render a Galaxy workflow as a Mermaid flowchart diagram.
3
+ */
4
+ import { workflowToMermaid } from "@galaxy-tool-util/schema";
5
+ import { writeFile } from "node:fs/promises";
6
+ import { readWorkflowFile } from "./workflow-io.js";
7
+ export async function runMermaid(filePath, opts) {
8
+ const data = await readWorkflowFile(filePath);
9
+ if (!data)
10
+ return;
11
+ const diagram = workflowToMermaid(data, { comments: opts.comments });
12
+ if (!opts.output) {
13
+ process.stdout.write(diagram + "\n");
14
+ return;
15
+ }
16
+ const content = opts.output.endsWith(".md")
17
+ ? `\`\`\`mermaid\n${diagram}\n\`\`\`\n`
18
+ : diagram + "\n";
19
+ await writeFile(opts.output, content, "utf-8");
20
+ console.error(`Mermaid diagram written to ${opts.output}`);
21
+ }
22
+ //# sourceMappingURL=mermaid.js.map
package/dist/commands/mermaid.js.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"mermaid.js","sourceRoot":"","sources":["../../src/commands/mermaid.ts"],"names":[],"mappings":"AAAA;;GAEG;AACH,OAAO,EAAE,iBAAiB,EAAE,MAAM,0BAA0B,CAAC;AAC7D,OAAO,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAC7C,OAAO,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAOpD,MAAM,CAAC,KAAK,UAAU,UAAU,CAAC,QAAgB,EAAE,IAA2B;IAC5E,MAAM,IAAI,GAAG,MAAM,gBAAgB,CAAC,QAAQ,CAAC,CAAC;IAC9C,IAAI,CAAC,IAAI;QAAE,OAAO;IAElB,MAAM,OAAO,GAAG,iBAAiB,CAAC,IAAI,EAAE,EAAE,QAAQ,EAAE,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC;IAErE,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;QACjB,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,CAAC;QACrC,OAAO;IACT,CAAC;IAED,MAAM,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;QACzC,CAAC,CAAC,kBAAkB,OAAO,YAAY;QACvC,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC;IACnB,MAAM,SAAS,CAAC,IAAI,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;IAC/C,OAAO,CAAC,KAAK,CAAC,8BAA8B,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;AAC7D,CAAC"}
package/dist/commands/resolve-tool.d.ts CHANGED
@@ -1,4 +1,5 @@
1
- import { type ToolCache, type ParsedTool } from "@galaxy-tool-util/core";
1
+ import { type ToolCache } from "@galaxy-tool-util/core";
2
+ import type { ParsedTool } from "@galaxy-tool-util/schema";
2
3
  export interface ResolvedTool {
3
4
  tool: ParsedTool;
4
5
  key: string;
package/dist/commands/resolve-tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"resolve-tool.d.ts","sourceRoot":"","sources":["../../src/commands/resolve-tool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,SAAS,EAAY,KAAK,UAAU,EAAE,MAAM,wBAAwB,CAAC;AAEnF,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,UAAU,CAAC;IACjB,GAAG,EAAE,MAAM,CAAC;CACb;AAED,MAAM,MAAM,YAAY,GACpB;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,GACtC;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,CAAC;AAExD,wBAAgB,cAAc,CAAC,CAAC,EAAE,YAAY,GAAG,YAAY,GAAG,CAAC,IAAI,YAAY,CAEhF;AAED,wBAAsB,cAAc,CAClC,KAAK,EAAE,SAAS,EAChB,MAAM,EAAE,MAAM,EACd,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI,GACtB,OAAO,CAAC,YAAY,GAAG,YAAY,CAAC,CAWtC"}
1
+ {"version":3,"file":"resolve-tool.d.ts","sourceRoot":"","sources":["../../src/commands/resolve-tool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,SAAS,EAAY,MAAM,wBAAwB,CAAC;AAClE,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AAE3D,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,UAAU,CAAC;IACjB,GAAG,EAAE,MAAM,CAAC;CACb;AAED,MAAM,MAAM,YAAY,GACpB;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,GACtC;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,CAAC;AAExD,wBAAgB,cAAc,CAAC,CAAC,EAAE,YAAY,GAAG,YAAY,GAAG,CAAC,IAAI,YAAY,CAEhF;AAED,wBAAsB,cAAc,CAClC,KAAK,EAAE,SAAS,EAChB,MAAM,EAAE,MAAM,EACd,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI,GACtB,OAAO,CAAC,YAAY,GAAG,YAAY,CAAC,CAWtC"}
package/dist/commands/resolve-tool.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"resolve-tool.js","sourceRoot":"","sources":["../../src/commands/resolve-tool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAkB,QAAQ,EAAmB,MAAM,wBAAwB,CAAC;AAWnF,MAAM,UAAU,cAAc,CAAC,CAA8B;IAC3D,OAAO,MAAM,IAAI,CAAC,CAAC;AACrB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,KAAgB,EAChB,MAAc,EACd,OAAuB;IAEvB,MAAM,MAAM,GAAG,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAC7D,IAAI,MAAM,CAAC,OAAO,KAAK,IAAI,EAAE,CAAC;QAC5B,OAAO,EAAE,IAAI,EAAE,YAAY,EAAE,MAAM,EAAE,CAAC;IACxC,CAAC;IACD,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;IACjF,MAAM,IAAI,GAAG,MAAM,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;IACzC,IAAI,IAAI,KAAK,IAAI,EAAE,CAAC;QAClB,OAAO,EAAE,IAAI,EAAE,YAAY,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC;IAC7C,CAAC;IACD,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC;AACvB,CAAC"}
1
+ {"version":3,"file":"resolve-tool.js","sourceRoot":"","sources":["../../src/commands/resolve-tool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAkB,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAYlE,MAAM,UAAU,cAAc,CAAC,CAA8B;IAC3D,OAAO,MAAM,IAAI,CAAC,CAAC;AACrB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,KAAgB,EAChB,MAAc,EACd,OAAuB;IAEvB,MAAM,MAAM,GAAG,KAAK,CAAC,sBAAsB,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAC7D,IAAI,MAAM,CAAC,OAAO,KAAK,IAAI,EAAE,CAAC;QAC5B,OAAO,EAAE,IAAI,EAAE,YAAY,EAAE,MAAM,EAAE,CAAC;IACxC,CAAC;IACD,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;IACjF,MAAM,IAAI,GAAG,MAAM,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;IACzC,IAAI,IAAI,KAAK,IAAI,EAAE,CAAC;QAClB,OAAO,EAAE,IAAI,EAAE,YAAY,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC;IAC7C,CAAC;IACD,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC;AACvB,CAAC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@galaxy-tool-util/cli",
3
- "version": "0.4.0",
3
+ "version": "1.0.0",
4
4
  "description": "galaxy-tool-cache CLI — cache and inspect Galaxy tool metadata",
5
5
  "type": "module",
6
6
  "bin": {
@@ -34,8 +34,8 @@
34
34
  "effect": "^3.21.0",
35
35
  "nunjucks": "^3.2.4",
36
36
  "yaml": "^2.8.3",
37
- "@galaxy-tool-util/core": "0.3.0",
38
- "@galaxy-tool-util/schema": "0.4.0"
37
+ "@galaxy-tool-util/core": "1.0.0",
38
+ "@galaxy-tool-util/schema": "1.0.0"
39
39
  },
40
40
  "devDependencies": {
41
41
  "@types/node": "^25.5.0",