@galaxy-tool-util/cli 0.1.0 → 0.2.0

package/dist/commands/validate-workflow.js

@@ -1,36 +1,21 @@
 import { ToolCache } from "@galaxy-tool-util/core";
-import { createFieldModel, detectFormat, GalaxyWorkflowSchema, NativeGalaxyWorkflowSchema, expandedNative, expandedFormat2, injectConnectionsIntoState, stripConnectedValues, scanForReplacements, } from "@galaxy-tool-util/schema";
+import { createFieldModel, GalaxyWorkflowSchema, NativeGalaxyWorkflowSchema, expandedNative, expandedFormat2, injectConnectionsIntoState, stripConnectedValues, scanForReplacements, } from "@galaxy-tool-util/schema";
 import * as ParseResult from "effect/ParseResult";
 import * as S from "effect/Schema";
-import { readFile } from "node:fs/promises";
 import { dirname } from "node:path";
-import * as YAML from "yaml";
 import { isResolveError, loadCachedTool } from "./resolve-tool.js";
 import { createDefaultResolver } from "./url-resolver.js";
+import { renderStepResults } from "./render-results.js";
+import { readWorkflowFile, resolveFormat } from "./workflow-io.js";
 function formatIssues(error) {
     const issues = ParseResult.ArrayFormatter.formatErrorSync(error);
     return issues.map((i) => `${i.path.join(".")}: ${i.message}`);
 }
 export async function runValidateWorkflow(filePath, opts) {
-    const raw = await readFile(filePath, "utf-8");
-    let data;
-    try {
-        if (filePath.endsWith(".ga") || filePath.endsWith(".json")) {
-            data = JSON.parse(raw);
-        }
-        else {
-            data = YAML.parse(raw);
-        }
-    }
-    catch (e) {
-        const msg = e instanceof Error ? e.message : String(e);
-        console.error(`Failed to parse ${filePath}: ${msg}`);
-        process.exitCode = 1;
+    const data = await readWorkflowFile(filePath);
+    if (!data)
         return;
-    }
-    const format = opts.format === "native" || opts.format === "format2"
-        ? opts.format
-        : detectFormat(data);
+    const format = resolveFormat(data, opts.format);
     const mode = opts.mode === "json-schema" ? "json-schema" : "effect";
     console.log(`Detected format: ${format}, mode: ${mode}`);
     // Build expansion options for resolving external subworkflow references
@@ -83,27 +68,8 @@ export async function runValidateWorkflow(filePath, opts) {
         process.exitCode = structOk ? 0 : 1;
         return;
     }
-    let stateOk = true;
-    let validated = 0;
-    let skipped = 0;
-    for (const r of results) {
-        if (r.status === "skip") {
-            skipped++;
-            console.warn(`  [${r.stepLabel}] skipped — ${r.errors[0] ?? "unknown"}`);
-        }
-        else if (r.status === "fail") {
-            validated++;
-            stateOk = false;
-            console.error(`  [${r.stepLabel}] tool_state errors (${r.toolId}):`);
-            for (const line of r.errors) {
-                console.error(`    ${line}`);
-            }
-        }
-        else {
-            validated++;
-            console.log(`  [${r.stepLabel}] tool_state: OK`);
-        }
-    }
+    const { validated, skipped } = renderStepResults(results);
+    const stateOk = !results.some((r) => r.status === "fail");
     console.log(`\nTool state: ${validated} validated, ${skipped} skipped`);
     process.exitCode = structOk && stateOk ? 0 : 1;
 }
@@ -134,9 +100,7 @@ async function _validateNativeWorkflow(wf, cache, prefix) {
 async function _validateNativeStep(step, stepLabel, toolId, toolVersion, cache) {
     const resolved = await loadCachedTool(cache, toolId, toolVersion);
     if (isResolveError(resolved)) {
-        const reason = resolved.kind === "no_version"
-            ? `no version for ${toolId}`
-            : `${toolId} not in cache`;
+        const reason = resolved.kind === "no_version" ? `no version for ${toolId}` : `${toolId} not in cache`;
         return { stepLabel, toolId, toolVersion, status: "skip", errors: [reason] };
     }
     const bundle = {
@@ -145,7 +109,13 @@ async function _validateNativeStep(step, stepLabel, toolId, toolVersion, cache)
     // Skip validation if replacement parameters (${...}) are present in typed fields
     const replacementScan = scanForReplacements(bundle.parameters, step.tool_state);
     if (replacementScan === "yes") {
-        return { stepLabel, toolId, toolVersion, status: "skip", errors: ["replacement parameters detected"] };
+        return {
+            stepLabel,
+            toolId,
+            toolVersion,
+            status: "skip",
+            errors: ["replacement parameters detected"],
+        };
     }
     // Deep copy state and inject connection markers
     const state = structuredClone(step.tool_state);
@@ -157,7 +127,13 @@ async function _validateNativeStep(step, stepLabel, toolId, toolVersion, cache)
     // Validate against workflow_step_native schema
     const fieldModel = createFieldModel(bundle, "workflow_step_native");
     if (!fieldModel) {
-        return { stepLabel, toolId, toolVersion, status: "skip", errors: ["unsupported parameter types"] };
+        return {
+            stepLabel,
+            toolId,
+            toolVersion,
+            status: "skip",
+            errors: ["unsupported parameter types"],
+        };
     }
     const validate = S.decodeUnknownEither(fieldModel, {
         onExcessProperty: "ignore",
@@ -169,7 +145,7 @@ async function _validateNativeStep(step, stepLabel, toolId, toolVersion, cache)
     return { stepLabel, toolId, toolVersion, status: "ok", errors: [] };
 }
 // --- Format2 validation ---
-async function validateFormat2Steps(data, cache, prefix = "", expansionOpts) {
+export async function validateFormat2Steps(data, cache, prefix = "", expansionOpts) {
     const expanded = await expandedFormat2(data, expansionOpts);
     return _validateFormat2Workflow(expanded, cache, prefix);
 }
@@ -196,9 +172,7 @@ async function _validateFormat2Workflow(wf, cache, prefix) {
 async function _validateFormat2Step(step, stepLabel, toolId, toolVersion, cache) {
     const resolved = await loadCachedTool(cache, toolId, toolVersion);
     if (isResolveError(resolved)) {
-        const reason = resolved.kind === "no_version"
-            ? `no version for ${toolId}`
-            : `${toolId} not in cache`;
+        const reason = resolved.kind === "no_version" ? `no version for ${toolId}` : `${toolId} not in cache`;
         return { stepLabel, toolId, toolVersion, status: "skip", errors: [reason] };
     }
     const bundle = {
@@ -212,14 +186,26 @@ async function _validateFormat2Step(step, stepLabel, toolId, toolVersion, cache)
     // Level 1: Validate base state against workflow_step
     const baseModel = createFieldModel(bundle, "workflow_step");
     if (!baseModel) {
-        return { stepLabel, toolId, toolVersion, status: "skip", errors: ["unsupported parameter types"] };
+        return {
+            stepLabel,
+            toolId,
+            toolVersion,
+            status: "skip",
+            errors: ["unsupported parameter types"],
+        };
     }
     const baseValidate = S.decodeUnknownEither(baseModel, {
         onExcessProperty: "ignore",
     });
     const baseResult = baseValidate(state);
     if (baseResult._tag === "Left") {
-        return { stepLabel, toolId, toolVersion, status: "fail", errors: formatIssues(baseResult.left) };
+        return {
+            stepLabel,
+            toolId,
+            toolVersion,
+            status: "fail",
+            errors: formatIssues(baseResult.left),
+        };
     }
     // Build connections dict from step.in entries
     const connections = {};
@@ -236,20 +222,35 @@ async function _validateFormat2Step(step, stepLabel, toolId, toolVersion, cache)
         const unmatchedKeys = Object.keys(remaining);
         if (unmatchedKeys.length > 0) {
             return {
-                stepLabel, toolId, toolVersion, status: "fail",
+                stepLabel,
+                toolId,
+                toolVersion,
+                status: "fail",
                 errors: unmatchedKeys.map((k) => `No parameter definition matching connection key "${k}"`),
             };
         }
         const linkedModel = createFieldModel(bundle, "workflow_step_linked");
         if (!linkedModel) {
-            return { stepLabel, toolId, toolVersion, status: "skip", errors: ["unsupported parameter types"] };
+            return {
+                stepLabel,
+                toolId,
+                toolVersion,
+                status: "skip",
+                errors: ["unsupported parameter types"],
+            };
         }
         const linkedValidate = S.decodeUnknownEither(linkedModel, {
             onExcessProperty: "ignore",
         });
         const linkedResult = linkedValidate(linkedState);
         if (linkedResult._tag === "Left") {
-            return { stepLabel, toolId, toolVersion, status: "fail", errors: formatIssues(linkedResult.left) };
+            return {
+                stepLabel,
+                toolId,
+                toolVersion,
+                status: "fail",
+                errors: formatIssues(linkedResult.left),
+            };
         }
     }
     return { stepLabel, toolId, toolVersion, status: "ok", errors: [] };

package/dist/commands/validate-workflow.js.map

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package/dist/commands/workflow-io.d.ts

@@ -0,0 +1,16 @@
+/**
+ * Shared workflow file I/O helpers for CLI commands.
+ */
+import { type WorkflowFormat } from "@galaxy-tool-util/schema";
+/** Read and parse a workflow file, auto-detecting JSON vs YAML by extension. */
+export declare function readWorkflowFile(filePath: string): Promise<Record<string, unknown> | null>;
+/** Resolve workflow format from user option or auto-detect. */
+export declare function resolveFormat(data: Record<string, unknown>, formatOpt?: string): WorkflowFormat;
+/** Serialize a workflow to JSON or YAML string based on format. */
+export declare function serializeWorkflow(data: Record<string, unknown>, format: WorkflowFormat, opts?: {
+    json?: boolean;
+    yaml?: boolean;
+}): string;
+/** Write serialized workflow content to a file or stdout. */
+export declare function writeWorkflowOutput(content: string, output?: string, label?: string): Promise<void>;
+//# sourceMappingURL=workflow-io.d.ts.map

package/dist/commands/workflow-io.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/workflow-io.js

@@ -0,0 +1,47 @@
+/**
+ * Shared workflow file I/O helpers for CLI commands.
+ */
+import { detectFormat } from "@galaxy-tool-util/schema";
+import { readFile, writeFile } from "node:fs/promises";
+import * as YAML from "yaml";
+/** Read and parse a workflow file, auto-detecting JSON vs YAML by extension. */
+export async function readWorkflowFile(filePath) {
+    const raw = await readFile(filePath, "utf-8");
+    try {
+        if (filePath.endsWith(".ga") || filePath.endsWith(".json")) {
+            return JSON.parse(raw);
+        }
+        return YAML.parse(raw);
+    }
+    catch (e) {
+        const msg = e instanceof Error ? e.message : String(e);
+        console.error(`Failed to parse ${filePath}: ${msg}`);
+        process.exitCode = 1;
+        return null;
+    }
+}
+/** Resolve workflow format from user option or auto-detect. */
+export function resolveFormat(data, formatOpt) {
+    if (formatOpt === "native" || formatOpt === "format2")
+        return formatOpt;
+    return detectFormat(data);
+}
+/** Serialize a workflow to JSON or YAML string based on format. */
+export function serializeWorkflow(data, format, opts) {
+    const useYaml = opts?.yaml || (!opts?.json && format === "format2");
+    if (useYaml) {
+        return YAML.stringify(data, { lineWidth: 0 });
+    }
+    return JSON.stringify(data, null, 2) + "\n";
+}
+/** Write serialized workflow content to a file or stdout. */
+export async function writeWorkflowOutput(content, output, label = "Workflow") {
+    if (output) {
+        await writeFile(output, content, "utf-8");
+        console.log(`${label} written to ${output}`);
+    }
+    else {
+        process.stdout.write(content);
+    }
+}
+//# sourceMappingURL=workflow-io.js.map

package/dist/commands/workflow-io.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts

@@ -16,4 +16,30 @@ export { runClear } from "./commands/clear.js";
 export { runSchema } from "./commands/schema.js";
 /** Validate a Galaxy workflow file (structure + optional tool state). */
 export { runValidateWorkflow } from "./commands/validate-workflow.js";
+/** Clean a Galaxy workflow — strip stale keys and decode legacy encoding. */
+export { runClean } from "./commands/clean.js";
+/** Lint a Galaxy workflow — structural checks, best practices, tool state validation. */
+export { runLint, lintWorkflowReport } from "./commands/lint.js";
+export type { LintReport, LintReportOptions } from "./commands/lint.js";
+/** Convert a Galaxy workflow between native and format2 formats. */
+export { runConvert } from "./commands/convert.js";
+/** Scan a workflow and cache all referenced tools. */
+export { runPopulateWorkflow } from "./commands/populate-workflow.js";
+/** Export the structural JSON Schema for Galaxy workflows. */
+export { runStructuralSchema } from "./commands/structural-schema.js";
+/** Batch validate all workflows under a directory. */
+export { runValidateTree } from "./commands/validate-tree.js";
+/** Batch lint all workflows under a directory. */
+export { runLintTree } from "./commands/lint-tree.js";
+/** Batch clean all workflows under a directory. */
+export { runCleanTree } from "./commands/clean-tree.js";
+/** Batch convert all workflows under a directory. */
+export { runConvertTree } from "./commands/convert-tree.js";
+/** Tree orchestrator infrastructure. */
+export { discoverWorkflows, collectTree, summarizeOutcomes, skipWorkflow, loadWorkflowSafe, } from "./commands/tree.js";
+export type { WorkflowInfo, WorkflowOutcome, TreeResult, TreeSummary } from "./commands/tree.js";
+/** Render step validation results to console. */
+export { renderStepResults } from "./commands/render-results.js";
+/** Write workflow content to file or stdout. */
+export { writeWorkflowOutput } from "./commands/workflow-io.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AACjE,YAAY,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AACxE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAC5B,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACjG,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC"}

package/dist/index.js

@@ -16,4 +16,28 @@ export { runClear } from "./commands/clear.js";
 export { runSchema } from "./commands/schema.js";
 /** Validate a Galaxy workflow file (structure + optional tool state). */
 export { runValidateWorkflow } from "./commands/validate-workflow.js";
+/** Clean a Galaxy workflow — strip stale keys and decode legacy encoding. */
+export { runClean } from "./commands/clean.js";
+/** Lint a Galaxy workflow — structural checks, best practices, tool state validation. */
+export { runLint, lintWorkflowReport } from "./commands/lint.js";
+/** Convert a Galaxy workflow between native and format2 formats. */
+export { runConvert } from "./commands/convert.js";
+/** Scan a workflow and cache all referenced tools. */
+export { runPopulateWorkflow } from "./commands/populate-workflow.js";
+/** Export the structural JSON Schema for Galaxy workflows. */
+export { runStructuralSchema } from "./commands/structural-schema.js";
+/** Batch validate all workflows under a directory. */
+export { runValidateTree } from "./commands/validate-tree.js";
+/** Batch lint all workflows under a directory. */
+export { runLintTree } from "./commands/lint-tree.js";
+/** Batch clean all workflows under a directory. */
+export { runCleanTree } from "./commands/clean-tree.js";
+/** Batch convert all workflows under a directory. */
+export { runConvertTree } from "./commands/convert-tree.js";
+/** Tree orchestrator infrastructure. */
+export { discoverWorkflows, collectTree, summarizeOutcomes, skipWorkflow, loadWorkflowSafe, } from "./commands/tree.js";
+/** Render step validation results to console. */
+export { renderStepResults } from "./commands/render-results.js";
+/** Write workflow content to file or stdout. */
+export { writeWorkflowOutput } from "./commands/workflow-io.js";
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,qEAAqE;AACrE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,yCAAyC;AACzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,0CAA0C;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAC7C,4DAA4D;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,2FAA2F;AAC3F,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAC;AACjD,yEAAyE;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,6EAA6E;AAC7E,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,yFAAyF;AACzF,OAAO,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,oBAAoB,CAAC;AAEjE,oEAAoE;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,sDAAsD;AACtD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,8DAA8D;AAC9D,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,sDAAsD;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,6BAA6B,CAAC;AAC9D,kDAAkD;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,mDAAmD;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,0BAA0B,CAAC;AACxD,qDAAqD;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC5D,wCAAwC;AACxC,OAAO,EACL,iBAAiB,EACjB,WAAW,EACX,iBAAiB,EACjB,YAAY,EACZ,gBAAgB,GACjB,MAAM,oBAAoB,CAAC;AAE5B,iDAAiD;AACjD,OAAO,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACjE,gDAAgD;AAChD,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC"}

package/package.json

@@ -1,11 +1,11 @@
 {
   "name": "@galaxy-tool-util/cli",
-  "version": "0.1.0",
+  "version": "0.2.0",
   "description": "galaxy-tool-cache CLI — cache and inspect Galaxy tool metadata",
   "type": "module",
   "bin": {
     "galaxy-tool-cache": "dist/bin/galaxy-tool-cache.js",
-    "galaxy-workflow-validate": "dist/bin/galaxy-workflow-validate.js"
+    "gxwf": "dist/bin/gxwf.js"
   },
   "exports": {
     ".": {
@@ -27,25 +27,25 @@
     "access": "public",
     "provenance": true
   },
-  "scripts": {
-    "build": "tsc",
-    "typecheck": "tsc --noEmit",
-    "test": "tsc --noEmit && vitest run",
-    "test:watch": "vitest",
-    "lint": "eslint src/ test/",
-    "format": "prettier --check 'src/**/*.ts' 'test/**/*.ts'",
-    "format-fix": "prettier --write 'src/**/*.ts' 'test/**/*.ts'"
-  },
   "license": "MIT",
   "dependencies": {
-    "@galaxy-tool-util/core": "workspace:*",
-    "@galaxy-tool-util/schema": "workspace:*",
     "ajv": "^8.18.0",
     "commander": "^14.0.0",
     "effect": "^3.21.0",
-    "yaml": "^2.8.3"
+    "yaml": "^2.8.3",
+    "@galaxy-tool-util/core": "0.2.0",
+    "@galaxy-tool-util/schema": "0.2.0"
   },
   "devDependencies": {
     "@types/node": "^25.5.0"
+  },
+  "scripts": {
+    "build": "tsc",
+    "typecheck": "tsc --noEmit",
+    "test": "tsc --noEmit && vitest run",
+    "test:watch": "vitest",
+    "lint": "eslint src/ test/",
+    "format": "prettier --check 'src/**/*.ts' 'test/**/*.ts'",
+    "format-fix": "prettier --write 'src/**/*.ts' 'test/**/*.ts'"
   }
-}
+}

package/dist/bin/galaxy-workflow-validate.d.ts

@@ -1,3 +0,0 @@
-#!/usr/bin/env node
-export {};
-//# sourceMappingURL=galaxy-workflow-validate.d.ts.map

package/dist/bin/galaxy-workflow-validate.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"galaxy-workflow-validate.d.ts","sourceRoot":"","sources":["../../src/bin/galaxy-workflow-validate.ts"],"names":[],"mappings":""}

package/dist/bin/galaxy-workflow-validate.js

@@ -1,17 +0,0 @@
-#!/usr/bin/env node
-import { Command } from "commander";
-import { runValidateWorkflow } from "../commands/validate-workflow.js";
-const program = new Command();
-program
-    .name("galaxy-workflow-validate")
-    .description("Validate Galaxy workflow files (structure + optional tool state)")
-    .version("1.0.0")
-    .argument("<file>", "Workflow file (.ga, .gxwf.yml)")
-    .option("--format <fmt>", "Force format: native or format2 (auto-detected by default)")
-    .option("--no-tool-state", "Skip tool state validation")
-    .option("--cache-dir <dir>", "Tool cache directory")
-    .option("--mode <mode>", "Validation backend: effect (default) or json-schema", "effect")
-    .option("--tool-schema-dir <dir>", "Directory of pre-exported per-tool JSON Schemas (for offline json-schema mode)")
-    .action(runValidateWorkflow);
-program.parse();
-//# sourceMappingURL=galaxy-workflow-validate.js.map

package/dist/bin/galaxy-workflow-validate.js.map

@@ -1 +0,0 @@
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