@gair/codex-med 0.1.1 → 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +4 -2
- package/package.json +2 -2
package/README.md
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<p align="center"><strong>codex-med</strong> — a medical-domain coding agent built on top of OpenAI's Codex CLI.</p>
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<p align="center">
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Adds biomedical tools (UniProt / GenBank / PDB lookup, antibody training database queries,
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Adds biomedical tools (UniProt / GenBank / PDB lookup, antibody training database queries, vector knowledge search, external model gateway support) on top of the upstream Codex CLI.
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</p>
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---
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@@ -34,7 +34,8 @@ This is a fork; everything in the upstream README about agents, sandboxing, MCP
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- **Built-in biomedical lookup tools** — fetch UniProt entries, GenBank records, PDB structures, and search UniProt directly from the agent loop
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- **Antibody training database tool** — read-only SQL queries over a local SQLite database (`training_ready_v1.sqlite`); see `docs/` for schema
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- **
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- **Vector knowledge search tool** — search a Qdrant-backed medical vector knowledge collection directly from Codex with `search_vector_knowledge`; see [docs/vector-knowledge-tool.md](docs/vector-knowledge-tool.md)
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- **External model gateway integration** — connect self-hosted prediction models (DLP-Affinity, structure prediction, ADMET, etc.) through the MCP gateway documented in [docs/model-integration.md](docs/model-integration.md)
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---
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## Docs
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- [Model integration guide](docs/model-integration.md) — how to plug self-hosted prediction models into the agent
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- [Vector knowledge tool](docs/vector-knowledge-tool.md) — how to configure the built-in vector database search tool
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- [Configuration](docs/config.md)
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- [Contributing](docs/contributing.md)
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package/package.json
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{
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"name": "@gair/codex-med",
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"version": "0.1.
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"version": "0.1.2",
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"description": "Codex CLI for medical domain agents (fork of OpenAI Codex CLI).",
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"license": "Apache-2.0",
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"bin": {
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},
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"packageManager": "pnpm@10.33.0+sha512.10568bb4a6afb58c9eb3630da90cc9516417abebd3fabbe6739f0ae795728da1491e9db5a544c76ad8eb7570f5c4bb3d6c637b2cb41bfdcdb47fa823c8649319",
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"optionalDependencies": {
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"@gair/codex-med-linux-x64": "npm:@gair/codex-med@0.1.
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"@gair/codex-med-linux-x64": "npm:@gair/codex-med@0.1.2-linux-x64"
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}
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}
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