@fraction12/deepclean 0.1.0-alpha.0

package/dist/clusters.js

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+import { clusterId } from "./ids.js";
+import { candidateCategories, schemaVersion, } from "./types.js";
+const priorityScore = { P0: 0, P1: 1, P2: 2, P3: 3 };
+const confidenceScore = { low: 1, medium: 2, high: 3 };
+const effortScore = { small: 1, medium: 2, large: 3 };
+const impactScore = { local: 1, feature: 2, "cross-cutting": 3 };
+const riskScore = { safe: 1, moderate: 2, "design-needed": 3 };
+export function buildClusters(runId, candidates, evidence, createdAt = new Date().toISOString(), options = {}) {
+    const maxCandidates = options.maxCandidates ?? 12;
+    const maxFiles = options.maxFiles ?? 18;
+    const splitBroad = options.splitBroad ?? true;
+    const active = candidates.filter((candidate) => !["ignored", "false-positive", "stale"].includes(candidate.status));
+    const graph = buildCandidateGraph(active, evidence);
+    const components = connectedComponents(active, graph.edges);
+    const clusters = components
+        .flatMap((component) => splitBroad ? splitBroadComponent(component, maxCandidates) : [component])
+        .filter((component) => component.length >= 2)
+        .map((component, index) => clusterForComponent(runId, component, index, graph.reasons, createdAt, {
+        maxCandidates,
+        maxFiles,
+    }));
+    return clusters.sort(compareClusters).map((cluster, index) => ({
+        ...cluster,
+        id: clusterId(index),
+    }));
+}
+export function unclusteredCandidateIds(candidates, clusters) {
+    const clustered = new Set(clusters.flatMap((cluster) => cluster.candidateIds));
+    return candidates
+        .filter((candidate) => candidate.status === "open" && !clustered.has(candidate.id))
+        .map((candidate) => candidate.id);
+}
+function buildCandidateGraph(candidates, evidence) {
+    const codeEdges = codeGraphEdges(evidence);
+    const edges = [];
+    const reasons = new Map();
+    for (let leftIndex = 0; leftIndex < candidates.length; leftIndex += 1) {
+        for (let rightIndex = leftIndex + 1; rightIndex < candidates.length; rightIndex += 1) {
+            const left = candidates[leftIndex];
+            const right = candidates[rightIndex];
+            if (!left || !right) {
+                continue;
+            }
+            const result = similarity(left, right, codeEdges);
+            if (result.weight < 4) {
+                continue;
+            }
+            edges.push({ from: left.id, to: right.id, weight: result.weight });
+            reasons.set(pairKey(left.id, right.id), result.reasons);
+        }
+    }
+    return { edges, reasons };
+}
+function similarity(left, right, codeEdges) {
+    let weight = 0;
+    const reasons = [];
+    const sharedEvidence = intersection(left.evidenceIds, right.evidenceIds);
+    if (sharedEvidence.length > 0) {
+        weight += Math.min(8, sharedEvidence.length * 5);
+        reasons.push(`shared evidence ${sharedEvidence.join(", ")}`);
+    }
+    const leftFiles = left.files.map((file) => file.path);
+    const rightFiles = right.files.map((file) => file.path);
+    const sharedFiles = intersection(leftFiles, rightFiles);
+    if (sharedFiles.length > 0) {
+        weight += Math.min(8, sharedFiles.length * 4);
+        reasons.push(`shared files ${sharedFiles.slice(0, 3).join(", ")}`);
+    }
+    const sharedAreas = intersection(leftFiles.map(moduleArea), rightFiles.map(moduleArea))
+        .filter((area) => area !== "." && area.split("/").length >= 3);
+    if (sharedAreas.length > 0) {
+        weight += 2;
+        reasons.push(`same module area ${sharedAreas[0]}`);
+    }
+    if (hasCodeGraphLink(leftFiles, rightFiles, codeEdges)) {
+        weight += 3;
+        reasons.push("connected by local import graph");
+    }
+    if (left.category === right.category) {
+        weight += 1;
+    }
+    const titleOverlap = intersection(tokens(left.title), tokens(right.title));
+    if (titleOverlap.length >= 2) {
+        weight += 1.5;
+        reasons.push(`related language ${titleOverlap.slice(0, 3).join(", ")}`);
+    }
+    return { weight, reasons };
+}
+function connectedComponents(candidates, edges) {
+    const byId = new Map(candidates.map((candidate) => [candidate.id, candidate]));
+    const adjacency = new Map();
+    for (const candidate of candidates) {
+        adjacency.set(candidate.id, new Set());
+    }
+    for (const edge of edges) {
+        adjacency.get(edge.from)?.add(edge.to);
+        adjacency.get(edge.to)?.add(edge.from);
+    }
+    const visited = new Set();
+    const components = [];
+    for (const candidate of candidates) {
+        if (visited.has(candidate.id)) {
+            continue;
+        }
+        const stack = [candidate.id];
+        const component = [];
+        visited.add(candidate.id);
+        while (stack.length > 0) {
+            const id = stack.pop();
+            if (!id) {
+                continue;
+            }
+            const item = byId.get(id);
+            if (item) {
+                component.push(item);
+            }
+            for (const next of adjacency.get(id) ?? []) {
+                if (!visited.has(next)) {
+                    visited.add(next);
+                    stack.push(next);
+                }
+            }
+        }
+        components.push(component);
+    }
+    return components;
+}
+function clusterForComponent(runId, candidates, index, reasons, createdAt, options) {
+    const sorted = [...candidates].sort(compareCandidates);
+    const allFiles = uniqueFiles(sorted.flatMap((candidate) => candidate.files));
+    const files = allFiles.slice(0, 20);
+    const category = mode(sorted.map((candidate) => candidate.category), candidateCategories);
+    const focus = clusterFocus(sorted, files);
+    const priority = minBy(sorted.map((candidate) => candidate.priority), priorityScore);
+    const confidence = maxBy(sorted.map((candidate) => candidate.confidence), confidenceScore);
+    const impact = maxBy(sorted.map((candidate) => candidate.impact), impactScore);
+    const effort = maxBy(sorted.map((candidate) => candidate.effort), effortScore);
+    const risk = maxBy(sorted.map((candidate) => candidate.risk), riskScore);
+    const evidenceIds = unique(sorted.flatMap((candidate) => candidate.evidenceIds));
+    const connectionReasons = connectionReasonsFor(sorted, reasons);
+    const title = clusterTitle(category, focus, sorted);
+    const warnings = clusterWarnings(sorted, allFiles, options);
+    const actionability = warnings.length > 0 ? "too-broad" : "bounded";
+    return {
+        schemaVersion,
+        recordType: "cluster",
+        id: clusterId(index),
+        runId,
+        title,
+        summary: `${sorted.length} related candidates point at ${focus === "." ? "a shared cleanup theme" : focus}.`,
+        category,
+        status: aggregateStatus(sorted),
+        priority,
+        confidence,
+        impact,
+        effort,
+        risk,
+        candidateIds: sorted.map((candidate) => candidate.id),
+        evidenceIds,
+        files,
+        rationale: connectionReasons.length > 0
+            ? `Candidates are grouped because they have ${connectionReasons.slice(0, 4).join("; ")}.`
+            : "Candidates are grouped because they share module area, files, category, or graph relationships.",
+        suggestedDirection: `Treat this as one cleanup theme. Start by mapping the shared responsibility in ${focus}, then address the highest-priority candidate first while keeping the remaining candidates visible as constraints.`,
+        verification: unique(sorted.flatMap((candidate) => candidate.verification)),
+        actionability,
+        warnings,
+        createdAt,
+        updatedAt: createdAt,
+    };
+}
+function splitBroadComponent(candidates, maxCandidates) {
+    if (candidates.length <= maxCandidates) {
+        return [candidates];
+    }
+    const byArea = groupBy(candidates, (candidate) => primaryArea(candidate));
+    const areaGroups = [...byArea.values()].filter((group) => group.length >= 2);
+    const singletons = [...byArea.values()].filter((group) => group.length === 1).flat();
+    if (areaGroups.length > 1) {
+        return [...areaGroups, ...splitByCategory(singletons, maxCandidates)].filter((group) => group.length >= 2);
+    }
+    return splitByCategory(candidates, maxCandidates);
+}
+function splitByCategory(candidates, maxCandidates) {
+    if (candidates.length === 0) {
+        return [];
+    }
+    const byCategory = groupBy(candidates, (candidate) => candidate.category);
+    const groups = [...byCategory.values()];
+    if (groups.length === 1 && candidates.length > maxCandidates) {
+        return chunk(candidates, maxCandidates);
+    }
+    return groups;
+}
+function clusterWarnings(candidates, files, options) {
+    const warnings = [];
+    if (candidates.length > options.maxCandidates) {
+        warnings.push(`Theme has ${candidates.length} candidates, above the configured ${options.maxCandidates} candidate limit.`);
+    }
+    if (files.length > options.maxFiles) {
+        warnings.push(`Theme spans ${files.length} files, above the configured ${options.maxFiles} file limit.`);
+    }
+    return warnings;
+}
+function primaryArea(candidate) {
+    return mode(candidate.files.map((file) => moduleArea(file.path)), []) || candidate.category;
+}
+function codeGraphEdges(evidence) {
+    const graph = evidence.find((record) => record.kind === "code-graph-summary");
+    const rawEdges = graph?.data["edges"];
+    const edges = new Set();
+    if (!Array.isArray(rawEdges)) {
+        return edges;
+    }
+    for (const edge of rawEdges) {
+        if (!isObject(edge) || typeof edge["from"] !== "string" || typeof edge["to"] !== "string") {
+            continue;
+        }
+        edges.add(`${edge["from"]}->${edge["to"]}`);
+        edges.add(`${edge["to"]}->${edge["from"]}`);
+    }
+    return edges;
+}
+function hasCodeGraphLink(leftFiles, rightFiles, codeEdges) {
+    for (const left of leftFiles) {
+        for (const right of rightFiles) {
+            if (codeEdges.has(`${left}->${right}`)) {
+                return true;
+            }
+        }
+    }
+    return false;
+}
+function connectionReasonsFor(candidates, reasons) {
+    const values = [];
+    for (let leftIndex = 0; leftIndex < candidates.length; leftIndex += 1) {
+        for (let rightIndex = leftIndex + 1; rightIndex < candidates.length; rightIndex += 1) {
+            const left = candidates[leftIndex];
+            const right = candidates[rightIndex];
+            if (!left || !right) {
+                continue;
+            }
+            values.push(...(reasons.get(pairKey(left.id, right.id)) ?? []));
+        }
+    }
+    return unique(values);
+}
+function compareClusters(a, b) {
+    const priorityDelta = priorityScore[a.priority] - priorityScore[b.priority];
+    if (priorityDelta !== 0) {
+        return priorityDelta;
+    }
+    const impactDelta = impactScore[b.impact] - impactScore[a.impact];
+    if (impactDelta !== 0) {
+        return impactDelta;
+    }
+    return b.candidateIds.length - a.candidateIds.length;
+}
+function compareCandidates(a, b) {
+    const priorityDelta = priorityScore[a.priority] - priorityScore[b.priority];
+    if (priorityDelta !== 0) {
+        return priorityDelta;
+    }
+    return a.id.localeCompare(b.id);
+}
+function clusterTitle(category, focus, candidates) {
+    const label = category
+        .replace("-", " ")
+        .replace(/\b\w/g, (value) => value.toUpperCase());
+    if (focus !== ".") {
+        return `${label} cleanup around ${focus}`;
+    }
+    return `${label} cleanup theme: ${candidates[0]?.title ?? "related candidates"}`;
+}
+function clusterFocus(candidates, files) {
+    const specificAreas = files
+        .map((file) => moduleArea(file.path))
+        .filter((area) => area !== "." && area.split("/").length >= 3);
+    if (specificAreas.length > 0) {
+        return mode(specificAreas, []);
+    }
+    const fileCounts = new Map();
+    for (const candidate of candidates) {
+        for (const file of candidate.files) {
+            fileCounts.set(file.path, (fileCounts.get(file.path) ?? 0) + 1);
+        }
+    }
+    const commonFile = [...fileCounts.entries()].sort((a, b) => b[1] - a[1])[0];
+    if (commonFile && commonFile[1] >= 2) {
+        return commonFile[0];
+    }
+    return candidates[0]?.files[0]?.path ?? ".";
+}
+function aggregateStatus(candidates) {
+    if (candidates.some((candidate) => candidate.status === "open")) {
+        return "open";
+    }
+    return candidates[0]?.status ?? "open";
+}
+function uniqueFiles(files) {
+    const seen = new Set();
+    const result = [];
+    for (const file of files) {
+        const key = `${file.path}:${file.startLine ?? ""}:${file.endLine ?? ""}`;
+        if (seen.has(key)) {
+            continue;
+        }
+        seen.add(key);
+        result.push(file);
+    }
+    return result;
+}
+function moduleArea(filePath) {
+    const parts = filePath.split("/");
+    if (parts.includes("src")) {
+        const srcIndex = parts.indexOf("src");
+        return parts.slice(0, Math.min(parts.length - 1, srcIndex + 3)).join("/");
+    }
+    if (parts.length <= 1) {
+        return ".";
+    }
+    return parts.slice(0, Math.min(parts.length - 1, 2)).join("/");
+}
+function pairKey(left, right) {
+    return [left, right].sort().join("|");
+}
+function intersection(left, right) {
+    const rightSet = new Set(right);
+    return unique(left.filter((item) => rightSet.has(item)));
+}
+function tokens(value) {
+    return unique(value.toLowerCase().match(/[a-z][a-z0-9]{2,}/g) ?? [])
+        .filter((token) => ![
+        "the",
+        "and",
+        "with",
+        "from",
+        "into",
+        "around",
+        "candidate",
+        "large",
+        "source",
+        "file",
+        "function",
+        "nearby",
+        "test",
+        "discovered",
+        "cleanup",
+    ].includes(token));
+}
+function unique(values) {
+    return [...new Set(values)];
+}
+function groupBy(values, keyFor) {
+    const groups = new Map();
+    for (const value of values) {
+        const key = keyFor(value);
+        const group = groups.get(key) ?? [];
+        group.push(value);
+        groups.set(key, group);
+    }
+    return groups;
+}
+function chunk(values, size) {
+    const chunks = [];
+    for (let index = 0; index < values.length; index += size) {
+        chunks.push(values.slice(index, index + size));
+    }
+    return chunks;
+}
+function mode(values, allowed) {
+    const allowedSet = allowed.length > 0 ? new Set(allowed) : undefined;
+    const counts = new Map();
+    for (const value of values) {
+        if (allowedSet && !allowedSet.has(value)) {
+            continue;
+        }
+        counts.set(value, (counts.get(value) ?? 0) + 1);
+    }
+    return [...counts.entries()].sort((a, b) => b[1] - a[1])[0]?.[0] ?? values[0] ?? ".";
+}
+function minBy(values, scores) {
+    const first = [...values].sort((a, b) => scores[a] - scores[b])[0];
+    if (!first) {
+        throw new Error("Cannot select minimum from empty values");
+    }
+    return first;
+}
+function maxBy(values, scores) {
+    const first = [...values].sort((a, b) => scores[b] - scores[a])[0];
+    if (!first) {
+        throw new Error("Cannot select maximum from empty values");
+    }
+    return first;
+}
+function isObject(value) {
+    return typeof value === "object" && value !== null;
+}
+//# sourceMappingURL=clusters.js.map

package/dist/clusters.js.map

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package/dist/defaults.d.ts

@@ -0,0 +1,5 @@
+import { type DeepcleanConfig } from "./types.js";
+export declare const stateDirName = ".deepclean";
+export declare const defaultExcludeDirs: string[];
+export declare const sourceExtensions: Set<string>;
+export declare function defaultConfig(): DeepcleanConfig;

package/dist/defaults.js

@@ -0,0 +1,130 @@
+import { schemaVersion } from "./types.js";
+export const stateDirName = ".deepclean";
+export const defaultExcludeDirs = [
+    ".git",
+    ".deepclean",
+    ".clawpatch",
+    ".codex",
+    ".claude",
+    ".vercel",
+    ".potato",
+    "node_modules",
+    "__pycache__",
+    ".pytest_cache",
+    ".mypy_cache",
+    ".ruff_cache",
+    ".venv",
+    "venv",
+    "dist",
+    "build",
+    "coverage",
+    "output",
+    ".next",
+    ".turbo",
+    ".cache",
+    "vendor",
+];
+export const sourceExtensions = new Set([
+    ".ts",
+    ".tsx",
+    ".js",
+    ".jsx",
+    ".mjs",
+    ".cjs",
+    ".mts",
+    ".cts",
+    ".py",
+]);
+export function defaultConfig() {
+    return {
+        schemaVersion,
+        recordType: "config",
+        enabledAdapters: [
+            "file-metrics",
+            "line-window-duplication",
+            "semgrep",
+            "sarif-ingest",
+            "code-graph",
+            "import-graph",
+            "typescript-structure",
+            "git-history",
+            "test-discovery",
+        ],
+        exclude: defaultExcludeDirs,
+        reviewSynthesis: {
+            enabled: false,
+            provider: "codex",
+            command: "codex",
+            timeoutMs: 120_000,
+            maxCandidates: 8,
+        },
+        candidateCaps: {
+            byKind: {
+                "duplicate-cluster": 16,
+                "external-duplicate": 16,
+                "sarif-finding": 24,
+                "dependency-hotspot": 24,
+                "large-function": 24,
+                "large-file": 24,
+                "test-gap": 24,
+                "churn-hotspot": 12,
+                "shallow-wrapper-cluster": 16,
+            },
+            byKindAndArea: {
+                "duplicate-cluster": 4,
+                "external-duplicate": 4,
+                "sarif-finding": 8,
+                "dependency-hotspot": 8,
+                "large-function": 8,
+                "large-file": 8,
+                "test-gap": 8,
+            },
+        },
+        clusters: {
+            maxCandidates: 12,
+            maxFiles: 18,
+            splitBroad: true,
+        },
+        reviewers: {
+            enabled: [
+                "architecture-deepening",
+                "deep-module-discipline",
+                "duplication-consolidation",
+                "dependency-graph",
+                "testability",
+                "feedback-loop-discipline",
+                "domain-language",
+                "agent-ready-slices",
+                "ai-slop-patterns",
+                "critic-pass",
+            ],
+            customPaths: [],
+        },
+        externalAnalyzers: {
+            jscpd: {
+                enabled: false,
+                command: "jscpd",
+                minTokens: 80,
+                maxFindings: 20,
+            },
+            semgrep: {
+                enabled: false,
+                command: "semgrep",
+                config: "auto",
+                timeoutMs: 120_000,
+                maxFindings: 80,
+            },
+            sarifPaths: [
+                "semgrep.sarif",
+                "semgrep-results.sarif",
+                ".semgrep/semgrep.sarif",
+                ".deepclean/input/semgrep.sarif",
+            ],
+        },
+        privacy: {
+            allowSourceInModel: false,
+            allowWebResearch: false,
+        },
+    };
+}
+//# sourceMappingURL=defaults.js.map

package/dist/defaults.js.map

@@ -0,0 +1 @@
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package/dist/discovery.d.ts

@@ -0,0 +1,10 @@
+export interface SourceFile {
+    path: string;
+    absolutePath: string;
+    extension: string;
+    text: string;
+    lines: string[];
+}
+export declare function discoverSourceFiles(root: string, excludes: string[]): Promise<SourceFile[]>;
+export declare function normalizePath(value: string): string;
+export declare function isTestPath(filePath: string): boolean;

package/dist/discovery.js

@@ -0,0 +1,48 @@
+import { readdir, readFile } from "node:fs/promises";
+import path from "node:path";
+import { sourceExtensions } from "./defaults.js";
+export async function discoverSourceFiles(root, excludes) {
+    const files = [];
+    const excludeSet = new Set(excludes);
+    async function walk(dir) {
+        const entries = await readdir(dir, { withFileTypes: true });
+        for (const entry of entries) {
+            if (excludeSet.has(entry.name)) {
+                continue;
+            }
+            const absolutePath = path.join(dir, entry.name);
+            if (entry.isDirectory()) {
+                await walk(absolutePath);
+                continue;
+            }
+            if (!entry.isFile()) {
+                continue;
+            }
+            const extension = path.extname(entry.name);
+            if (!sourceExtensions.has(extension)) {
+                continue;
+            }
+            const text = await readFile(absolutePath, "utf8");
+            const relativePath = path.relative(root, absolutePath);
+            files.push({
+                path: normalizePath(relativePath),
+                absolutePath,
+                extension,
+                text,
+                lines: text.split(/\r?\n/),
+            });
+        }
+    }
+    await walk(root);
+    return files.sort((a, b) => a.path.localeCompare(b.path));
+}
+export function normalizePath(value) {
+    return value.split(path.sep).join("/");
+}
+export function isTestPath(filePath) {
+    return /(^|\/)(__tests__|test|tests|spec)\//.test(filePath)
+        || /\.(test|spec)\.[cm]?[jt]sx?$/.test(filePath)
+        || /(^|\/)test_[^/]+\.py$/.test(filePath)
+        || /(^|\/)[^/]+_(test|tests)\.py$/.test(filePath);
+}
+//# sourceMappingURL=discovery.js.map

package/dist/discovery.js.map

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package/dist/evidence.d.ts

@@ -0,0 +1,16 @@
+import { type SourceFile } from "./discovery.js";
+import { type DeepcleanConfig, type Diagnostic, type EvidenceRecord } from "./types.js";
+export interface AdapterContext {
+    root: string;
+    runId: string;
+    createdAt: string;
+    files: SourceFile[];
+    config: DeepcleanConfig;
+}
+export interface AdapterResult {
+    evidence: EvidenceRecord[];
+    diagnostics: Diagnostic[];
+}
+export type EvidenceAdapter = (context: AdapterContext) => Promise<AdapterResult>;
+export declare const evidenceAdapters: Record<string, EvidenceAdapter>;
+export declare function runEvidenceAdapters(enabledAdapters: string[], context: AdapterContext): Promise<AdapterResult>;