@fractary/core-cli 0.4.13 → 0.4.16

package/README.md

@@ -7,15 +7,15 @@ Command-line interface for Fractary Core SDK - work tracking, repository managem
 
 ## Overview
 
-The Fractary Core CLI provides command-line access to all core operations including work tracking, repository management, specification management, logging, file storage, and documentation. It's designed for automation, scripting, and CI/CD integration.
+The Fractary Core CLI provides command-line access to all core operations including configuration management, work tracking, repository management, specification management, logging, file storage, and documentation. It is designed for automation, scripting, and CI/CD integration.
 
 ### Key Features
 
-- **6 Command Modules**: work, repo, spec, logs, file, docs
+- **7 Command Modules**: config, work, repo, spec, logs, file, docs
 - **Multi-Platform Support**: GitHub, GitLab, Bitbucket, Jira, Linear
-- **JSON Output**: Machine-readable output for scripting
-- **Configuration Files**: YAML/JSON configuration support
-- **Environment Variables**: Flexible configuration options
+- **JSON Output**: Machine-readable output for scripting (`--json` flag on all commands)
+- **YAML Configuration**: Unified configuration at `.fractary/config.yaml`
+- **Environment Management**: Switch between dev, staging, and production environments
 
 ## Installation
 
@@ -29,58 +29,99 @@ npx @fractary/core-cli [command]
 
 ## Usage
 
-The CLI provides six main command categories:
+The CLI provides seven main command categories with dash-separated subcommand names:
 
 ```bash
-fractary-core <command> [subcommand] [options]
+fractary-core <module> <command> [arguments] [options]
+```
+
+### Configuration
+
+Manage Fractary Core configuration and environments:
+
+```bash
+# Initialize configuration
+fractary-core config configure --work-platform github --file-handler local
+
+# Validate configuration
+fractary-core config validate
+
+# Show configuration (sensitive values redacted)
+fractary-core config show
+
+# Switch environment
+fractary-core config env-switch prod
+
+# List available environments
+fractary-core config env-list
+
+# Show current environment status
+fractary-core config env-show
+
+# Clear environment credentials
+fractary-core config env-clear
 ```
 
 ### Work Tracking
 
-Manage work items, issues, and project tasks:
+Manage work items, issues, comments, and labels:
 
 ```bash
 # Fetch an issue
-fractary-core work issue fetch 123
+fractary-core work issue-fetch 123
 
 # Create a new issue
-fractary-core work issue create --title "Add feature" --body "Description"
+fractary-core work issue-create --title "Add feature" --body "Description"
 
 # Search issues
-fractary-core work issue search --query "bug" --state open
+fractary-core work issue-search --query "bug" --state open
 
-# Add comment
-fractary-core work comment create 123 --body "Fixed in PR #456"
+# Add a comment
+fractary-core work issue-comment 123 --body "Fixed in PR #456"
+
+# List comments
+fractary-core work issue-comment-list 123
 
 # Manage labels
-fractary-core work label add 123 --labels "bug,urgent"
+fractary-core work label-add 123 --labels "bug,urgent"
+fractary-core work label-remove 123 --labels "wontfix"
+fractary-core work label-list
+
+# Classify work type
+fractary-core work issue-classify 123
 
-# Initialize work tracking
-fractary-core work init --platform github
+# Configure work tracking
+fractary-core work configure --platform github
 ```
 
 ### Repository Operations
 
-Manage Git repositories, branches, commits, and pull requests:
+Manage Git repositories, branches, commits, pull requests, tags, and worktrees:
 
 ```bash
 # Create a branch
-fractary-core repo branch create feature/new-feature
+fractary-core repo branch-create feature/new-feature --base main --checkout
 
 # Commit with conventional commits
 fractary-core repo commit --message "Add login" --type feat --scope auth
 
 # Create pull request
-fractary-core repo pr create --title "Add feature" --body "Description"
+fractary-core repo pr-create --title "Add feature" --body "Description" --draft
+
+# Merge pull request
+fractary-core repo pr-merge 42 --strategy squash --delete-branch
 
 # Manage tags
-fractary-core repo tag create v1.0.0 --message "Release 1.0.0"
+fractary-core repo tag-create v1.0.0 --message "Release 1.0.0"
+fractary-core repo tag-push v1.0.0
 
 # Work with worktrees
-fractary-core repo worktree create feature-branch
+fractary-core repo worktree-create feature-branch --base main
 
-# Check status
+# Check status, push, and pull
 fractary-core repo status
+fractary-core repo push --set-upstream
+fractary-core repo pull --rebase
 ```
 
 ### Specification Management
@@ -89,104 +130,193 @@ Create and manage technical specifications:
 
 ```bash
 # Create specification
-fractary-core spec create "User Authentication" --template feature
+fractary-core spec spec-create-file "User Authentication" --template feature
 
-# Validate specification
-fractary-core spec validate SPEC-20241216
+# Get specification
+fractary-core spec spec-get SPEC-00123
 
 # List specifications
-fractary-core spec list --status validated
+fractary-core spec spec-list --status validated
 
-# Generate refinement questions
-fractary-core spec refine SPEC-20241216
+# Validate specification structure
+fractary-core spec spec-validate-check SPEC-00123
+
+# Scan for refinement gaps
+fractary-core spec spec-refine-scan SPEC-00123
+
+# Archive specs for a completed issue
+fractary-core spec spec-archive 123
+
+# List available templates
+fractary-core spec template-list
 ```
 
 ### Log Management
 
-Capture and manage operational logs:
+Capture and manage operational logs with typed schemas:
 
 ```bash
+# List available log types
+fractary-core logs types
+
+# Get log type definition
+fractary-core logs type-info session
+
+# Validate a log file against its type schema
+fractary-core logs validate ./logs/session-2024-01-15.md
+
 # Start session capture
 fractary-core logs capture 123 --model claude-3.5-sonnet
 
+# Stop session capture
+fractary-core logs stop
+
 # Write log entry
 fractary-core logs write --type build --title "Build" --content "Success"
 
+# Read a log entry
+fractary-core logs read log-abc123
+
 # Search logs
 fractary-core logs search --query "error" --type session
 
+# List logs
+fractary-core logs list --type build --limit 20
+
 # Archive old logs
-fractary-core logs archive --max-age 90
+fractary-core logs archive --max-age 90 --compress
+
+# Delete a log
+fractary-core logs delete log-abc123
 ```
 
 ### File Storage
 
-Manage file storage operations:
+Manage file storage operations with multi-source support:
 
 ```bash
-# Write file
+# Upload a local file
+fractary-core file upload ./data.json --remote-path "backups/data.json"
+
+# Download a file
+fractary-core file download "backups/data.json" --local-path ./data.json
+
+# Write content directly
 fractary-core file write data.json --content '{"key":"value"}'
 
-# Read file
+# Read file content
 fractary-core file read data.json
 
 # List files
 fractary-core file list --prefix "data/"
 
-# Copy file
+# Check if file exists
+fractary-core file exists data.json
+
+# Copy and move files
 fractary-core file copy source.txt destination.txt
+fractary-core file move old-path.txt new-path.txt
+
+# Get a URL for a file
+fractary-core file get-url report.pdf --expires-in 3600
+
+# Show file plugin configuration
+fractary-core file show-config
+
+# Test storage connection
+fractary-core file test-connection --source my-s3-bucket
 ```
 
 ### Documentation Management
 
-Create and manage documentation:
+Create and manage typed documentation:
 
 ```bash
 # Create document
-fractary-core docs create guide-001 \
+fractary-core docs doc-create guide-001 \
   --title "User Guide" \
   --content "..." \
   --format markdown \
+  --doc-type api \
   --tags "guide,user"
 
+# Get a document
+fractary-core docs doc-get guide-001
+
 # Search documents
-fractary-core docs search --text "authentication" --tags "api"
+fractary-core docs doc-search --text "authentication" --tags "api" --doc-type adr
 
 # List documents
-fractary-core docs list --category "guides"
+fractary-core docs doc-list --category "guides"
+
+# Update a document
+fractary-core docs doc-update guide-001 --content "..." --title "Updated Guide"
+
+# Delete a document
+fractary-core docs doc-delete guide-001
+
+# Archive a document
+fractary-core docs doc-archive guide-001
+
+# Scan for gaps and refinement areas
+fractary-core docs doc-refine-scan guide-001
+
+# Validate implementation fulfillment
+fractary-core docs doc-validate-fulfillment spec-001
+
+# List available document types
+fractary-core docs type-list
+
+# Get document type details
+fractary-core docs type-info adr --template
 ```
 
 ## Configuration
 
-The CLI uses configuration files stored in `.fractary/core/config.json`:
-
-```json
-{
-  "work": {
-    "platform": "github",
-    "repository": {
-      "owner": "fractary",
-      "name": "core"
-    }
-  },
-  "repo": {
-    "platform": "github"
-  }
-}
+The CLI uses a unified YAML configuration file at `.fractary/config.yaml`:
+
+```yaml
+version: "2.0"
+
+work:
+  active_handler: github
+  handlers:
+    github:
+      owner: fractary
+      repo: core
+      token: ${GITHUB_TOKEN}
+
+repo:
+  active_handler: github
+  handlers:
+    github:
+      owner: fractary
+      repo: core
+      token: ${GITHUB_TOKEN}
+      merge:
+        strategy: squash  # options: squash, merge, rebase
+
+file:
+  active_handler: local
+  handlers:
+    local:
+      base_path: .fractary/files
 ```
 
-Initialize configuration for each plugin:
+Initialize configuration:
 
 ```bash
-fractary-core work init --platform github
+fractary-core config configure --work-platform github --file-handler local
 ```
 
+Environment variables are referenced using `${VAR_NAME}` syntax in the config file and resolved at runtime from `.env` files. Manage environments with `config env-*` commands.
+
 ## JSON Output
 
-All commands support `--json` flag for machine-readable output:
+All commands support the `--json` flag for machine-readable output:
 
 ```bash
-fractary-core work issue fetch 123 --json
+fractary-core work issue-fetch 123 --json
 ```
 
 Output format:
@@ -202,6 +332,18 @@ Output format:
 }
 ```
 
+Error output format:
+
+```json
+{
+  "status": "error",
+  "error": {
+    "code": "NOT_FOUND",
+    "message": "Issue not found: 999"
+  }
+}
+```
+
 ## Programmatic Usage
 
 Import and use CLI components programmatically:
@@ -223,87 +365,122 @@ program.parse();
 
 ## Command Reference
 
+### Config Commands
+
+| Command | Description |
+|---------|-------------|
+| `config configure` | Initialize or update `.fractary/config.yaml` |
+| `config validate` | Validate `.fractary/config.yaml` |
+| `config show` | Display configuration (sensitive values redacted) |
+| `config env-switch <name>` | Switch to a different environment |
+| `config env-list` | List available environments |
+| `config env-show` | Show current environment status |
+| `config env-clear` | Clear environment credentials |
+
 ### Work Commands
 
-- `work issue fetch <number>` - Fetch issue details
-- `work issue create` - Create new issue
-- `work issue update <number>` - Update issue
-- `work issue close <number>` - Close issue
-- `work issue reopen <number>` - Reopen issue
-- `work issue assign <number>` - Assign/unassign issue
-- `work issue classify <number>` - Classify work type
-- `work issue search` - Search issues
-- `work comment create <number>` - Add comment
-- `work comment list <number>` - List comments
-- `work label add <number>` - Add labels
-- `work label remove <number>` - Remove labels
-- `work label list` - List all labels
-- `work milestone create` - Create milestone
-- `work milestone list` - List milestones
-- `work milestone set <number>` - Set milestone
-- `work init` - Initialize work tracking
+| Command | Description |
+|---------|-------------|
+| `work issue-fetch <number>` | Fetch a work item by ID |
+| `work issue-create` | Create a new work item |
+| `work issue-update <number>` | Update a work item |
+| `work issue-close <number>` | Close a work item |
+| `work issue-reopen <number>` | Reopen a closed work item |
+| `work issue-assign <number>` | Assign or unassign a work item |
+| `work issue-classify <number>` | Classify work item type (feature, bug, chore, patch) |
+| `work issue-search` | Search work items |
+| `work issue-comment <number>` | Add a comment to a work item |
+| `work issue-comment-list <number>` | List comments on a work item |
+| `work label-add <number>` | Add labels to a work item |
+| `work label-remove <number>` | Remove labels from a work item |
+| `work label-list` | List all available labels |
+| `work configure` | Configure work tracking settings |
 
 ### Repo Commands
 
-- `repo branch create <name>` - Create branch
-- `repo branch delete <name>` - Delete branch
-- `repo branch list` - List branches
-- `repo commit` - Create commit
-- `repo pr create` - Create pull request
-- `repo pr list` - List pull requests
-- `repo pr merge <number>` - Merge pull request
-- `repo pr review <number>` - Review pull request
-- `repo tag create <name>` - Create tag
-- `repo tag push <name>` - Push tag
-- `repo tag list` - List tags
-- `repo worktree create <branch>` - Create worktree
-- `repo worktree list` - List worktrees
-- `repo worktree remove <path>` - Remove worktree
-- `repo worktree cleanup` - Clean up worktrees
-- `repo status` - Show status
-- `repo push` - Push to remote
-- `repo pull` - Pull from remote
+| Command | Description |
+|---------|-------------|
+| `repo branch-create <name>` | Create a new branch |
+| `repo branch-delete <name>` | Delete a branch |
+| `repo branch-list` | List branches |
+| `repo commit` | Create a commit with conventional commit format |
+| `repo pr-create` | Create a new pull request |
+| `repo pr-list` | List pull requests |
+| `repo pr-merge <number>` | Merge a pull request |
+| `repo pr-review <number>` | Review a pull request |
+| `repo tag-create <name>` | Create a new tag |
+| `repo tag-push <name>` | Push tag(s) to remote |
+| `repo tag-list` | List tags |
+| `repo worktree-create <branch>` | Create a new worktree |
+| `repo worktree-list` | List worktrees |
+| `repo worktree-remove <path>` | Remove a worktree |
+| `repo worktree-cleanup` | Clean up stale worktrees |
+| `repo status` | Show repository status |
+| `repo push` | Push commits to remote |
+| `repo pull` | Pull changes from remote |
 
 ### Spec Commands
 
-- `spec create <title>` - Create specification
-- `spec get <id>` - Get specification
-- `spec list` - List specifications
-- `spec update <id>` - Update specification
-- `spec validate <id>` - Validate specification
-- `spec refine <id>` - Generate refinement questions
-- `spec delete <id>` - Delete specification
-- `spec templates` - List templates
+| Command | Description |
+|---------|-------------|
+| `spec spec-create-file <title>` | Create a new specification file |
+| `spec spec-get <id>` | Get a specification by ID or path |
+| `spec spec-list` | List specifications |
+| `spec spec-update <id>` | Update a specification |
+| `spec spec-delete <id>` | Delete a specification |
+| `spec spec-validate-check <id>` | Run structural validation checks |
+| `spec spec-refine-scan <id>` | Scan for structural gaps and refinement areas |
+| `spec spec-archive <issue_number>` | Archive specifications for a completed issue |
+| `spec template-list` | List available specification templates |
 
 ### Logs Commands
 
-- `logs capture <issue>` - Start session capture
-- `logs stop` - Stop capture
-- `logs write` - Write log entry
-- `logs read <id>` - Read log entry
-- `logs search` - Search logs
-- `logs list` - List logs
-- `logs archive` - Archive logs
-- `logs delete <id>` - Delete log
+| Command | Description |
+|---------|-------------|
+| `logs types` | List available log types |
+| `logs type-info <type>` | Get log type definition |
+| `logs validate <file>` | Validate a log file against its type schema |
+| `logs capture <issue_number>` | Start session capture |
+| `logs stop` | Stop session capture |
+| `logs write` | Write a log entry |
+| `logs read <id>` | Read a log entry |
+| `logs search` | Search logs |
+| `logs list` | List logs |
+| `logs archive` | Archive old logs |
+| `logs delete <id>` | Delete a log entry |
 
 ### File Commands
 
-- `file write <path>` - Write file
-- `file read <path>` - Read file
-- `file exists <path>` - Check existence
-- `file list` - List files
-- `file delete <path>` - Delete file
-- `file copy <source> <dest>` - Copy file
-- `file move <source> <dest>` - Move file
+| Command | Description |
+|---------|-------------|
+| `file upload <local-path>` | Upload a local file to storage |
+| `file download <remote-path>` | Download a file from storage to local path |
+| `file write <path>` | Write content to a storage path |
+| `file read <path>` | Read content from a storage path |
+| `file list` | List files in storage |
+| `file delete <path>` | Delete a file from storage |
+| `file exists <path>` | Check if a file exists in storage |
+| `file copy <src> <dest>` | Copy a file within storage |
+| `file move <src> <dest>` | Move a file within storage |
+| `file get-url <path>` | Get a URL for a file in storage |
+| `file show-config` | Show file plugin configuration |
+| `file test-connection` | Test storage connection |
 
 ### Docs Commands
 
-- `docs create <id>` - Create document
-- `docs get <id>` - Get document
-- `docs list` - List documents
-- `docs update <id>` - Update document
-- `docs delete <id>` - Delete document
-- `docs search` - Search documents
+| Command | Description |
+|---------|-------------|
+| `docs doc-create <id>` | Create a new document |
+| `docs doc-get <id>` | Get a document |
+| `docs doc-list` | List documents |
+| `docs doc-update <id>` | Update a document |
+| `docs doc-delete <id>` | Delete a document |
+| `docs doc-search` | Search documents |
+| `docs doc-archive <id>` | Archive a document |
+| `docs doc-refine-scan <id>` | Scan for gaps and generate refinement questions |
+| `docs doc-validate-fulfillment <id>` | Validate implementation fulfillment |
+| `docs type-list` | List available document types |
+| `docs type-info <type>` | Get detailed info about a document type |
 
 ## Platform Support
 

package/dist/commands/docs/doc.d.ts

@@ -8,4 +8,7 @@ export declare function createDocListCommand(): Command;
 export declare function createDocUpdateCommand(): Command;
 export declare function createDocDeleteCommand(): Command;
 export declare function createDocSearchCommand(): Command;
+export declare function createDocArchiveCommand(): Command;
+export declare function createDocRefineScanCommand(): Command;
+export declare function createDocValidateFulfillmentCommand(): Command;
 //# sourceMappingURL=doc.d.ts.map

package/dist/commands/docs/doc.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doc.d.ts","sourceRoot":"","sources":["../../../src/commands/docs/doc.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAKpC,wBAAgB,sBAAsB,IAAI,OAAO,CAqEhD;AAED,wBAAgB,mBAAmB,IAAI,OAAO,CA8C7C;AAED,wBAAgB,oBAAoB,IAAI,OAAO,CA8C9C;AAED,wBAAgB,sBAAsB,IAAI,OAAO,CAiDhD;AAED,wBAAgB,sBAAsB,IAAI,OAAO,CAqChD;AAED,wBAAgB,sBAAsB,IAAI,OAAO,CAgDhD"}
+{"version":3,"file":"doc.d.ts","sourceRoot":"","sources":["../../../src/commands/docs/doc.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAKpC,wBAAgB,sBAAsB,IAAI,OAAO,CAqEhD;AAED,wBAAgB,mBAAmB,IAAI,OAAO,CA8C7C;AAED,wBAAgB,oBAAoB,IAAI,OAAO,CA8C9C;AAED,wBAAgB,sBAAsB,IAAI,OAAO,CAiDhD;AAED,wBAAgB,sBAAsB,IAAI,OAAO,CAqChD;AAED,wBAAgB,sBAAsB,IAAI,OAAO,CAgDhD;AAED,wBAAgB,uBAAuB,IAAI,OAAO,CA6FjD;AAED,wBAAgB,0BAA0B,IAAI,OAAO,CAkIpD;AAED,wBAAgB,mCAAmC,IAAI,OAAO,CA+G7D"}

package/dist/commands/docs/doc.js

@@ -2,6 +2,39 @@
 /**
  * Document operations for documentation management
  */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
@@ -12,6 +45,9 @@ exports.createDocListCommand = createDocListCommand;
 exports.createDocUpdateCommand = createDocUpdateCommand;
 exports.createDocDeleteCommand = createDocDeleteCommand;
 exports.createDocSearchCommand = createDocSearchCommand;
+exports.createDocArchiveCommand = createDocArchiveCommand;
+exports.createDocRefineScanCommand = createDocRefineScanCommand;
+exports.createDocValidateFulfillmentCommand = createDocValidateFulfillmentCommand;
 const commander_1 = require("commander");
 const chalk_1 = __importDefault(require("chalk"));
 const factory_1 = require("../../sdk/factory");
@@ -296,4 +332,325 @@ function createDocSearchCommand() {
         }
     });
 }
+function createDocArchiveCommand() {
+    return new commander_1.Command('doc-archive')
+        .description('Archive a document using its type\'s configured archive source')
+        .argument('<id>', 'Document ID')
+        .option('--source <name>', 'Override archive source (default: from type config)')
+        .option('--json', 'Output as JSON')
+        .action(async (id, options) => {
+        try {
+            const docsManager = await (0, factory_1.getDocsManager)();
+            const doc = await docsManager.getDoc(id);
+            if (!doc) {
+                if (options.json) {
+                    console.error(JSON.stringify({ status: 'error', error: { code: 'DOC_NOT_FOUND', message: `Document not found: ${id}` } }, null, 2));
+                }
+                else {
+                    console.error(chalk_1.default.red(`Document not found: ${id}`));
+                }
+                process.exit(3);
+            }
+            // Load type config for archive settings
+            const registry = await (0, factory_1.getDocTypeRegistry)();
+            const docType = doc.metadata.docType ? registry.getType(doc.metadata.docType) : null;
+            const archiveConfig = docType?.archive;
+            if (!archiveConfig?.enabled && !options.source) {
+                const msg = `Document type '${doc.metadata.docType || 'unknown'}' does not have archival enabled. Use --source to specify an archive source.`;
+                if (options.json) {
+                    console.error(JSON.stringify({ status: 'error', error: { code: 'ARCHIVE_NOT_ENABLED', message: msg } }, null, 2));
+                }
+                else {
+                    console.error(chalk_1.default.red(msg));
+                }
+                process.exit(1);
+            }
+            const sourceName = options.source || archiveConfig.source;
+            const verifyChecksum = archiveConfig?.verifyChecksum ?? true;
+            const deleteOriginal = archiveConfig?.deleteOriginal ?? false;
+            // Get file manager for the archive source
+            const fileManager = await (0, factory_1.getFileManagerForSource)(sourceName);
+            // Read source content
+            const content = doc.content;
+            const archivePath = `archive/${doc.metadata.docType || 'docs'}/${new Date().getFullYear()}/${id}.md`;
+            // Compute checksum
+            const crypto = await Promise.resolve().then(() => __importStar(require('crypto')));
+            const checksum = crypto.createHash('sha256').update(content).digest('hex');
+            // Write to archive
+            await fileManager.write(archivePath, content);
+            // Verify if configured
+            if (verifyChecksum) {
+                const archived = await fileManager.read(archivePath);
+                if (!archived) {
+                    throw new Error('Archive verification failed: file not readable after write');
+                }
+                const archivedChecksum = crypto.createHash('sha256').update(archived).digest('hex');
+                if (checksum !== archivedChecksum) {
+                    throw new Error(`Archive checksum mismatch: expected ${checksum}, got ${archivedChecksum}`);
+                }
+            }
+            // Delete original if configured
+            if (deleteOriginal) {
+                await docsManager.deleteDoc(id);
+            }
+            const result = {
+                success: true,
+                sourcePath: doc.path || id,
+                archivePath,
+                checksum,
+                originalDeleted: deleteOriginal,
+            };
+            if (options.json) {
+                console.log(JSON.stringify({ status: 'success', data: result }, null, 2));
+            }
+            else {
+                console.log(chalk_1.default.green(`✓ Archived document: ${id}`));
+                console.log(chalk_1.default.gray(`  Archive path: ${archivePath}`));
+                console.log(chalk_1.default.gray(`  Checksum: ${checksum}`));
+                console.log(chalk_1.default.gray(`  Source: ${sourceName}`));
+                if (deleteOriginal) {
+                    console.log(chalk_1.default.gray(`  Original deleted: yes`));
+                }
+            }
+        }
+        catch (error) {
+            (0, errors_1.handleError)(error, options);
+        }
+    });
+}
+function createDocRefineScanCommand() {
+    return new commander_1.Command('doc-refine-scan')
+        .description('Scan a document for gaps and generate refinement questions')
+        .argument('<id>', 'Document ID')
+        .option('--json', 'Output as JSON')
+        .action(async (id, options) => {
+        try {
+            const docsManager = await (0, factory_1.getDocsManager)();
+            const doc = await docsManager.getDoc(id);
+            if (!doc) {
+                if (options.json) {
+                    console.error(JSON.stringify({ status: 'error', error: { code: 'DOC_NOT_FOUND', message: `Document not found: ${id}` } }, null, 2));
+                }
+                else {
+                    console.error(chalk_1.default.red(`Document not found: ${id}`));
+                }
+                process.exit(3);
+            }
+            // Load type for structure info
+            const registry = await (0, factory_1.getDocTypeRegistry)();
+            const docType = doc.metadata.docType ? registry.getType(doc.metadata.docType) : null;
+            const questions = [];
+            const categories = new Set();
+            let qIndex = 0;
+            // Check for missing required sections
+            if (docType?.structure?.requiredSections) {
+                for (const section of docType.structure.requiredSections) {
+                    const sectionRegex = new RegExp(`^##\\s+${section.replace(/[.*+?^${}()|[\]\\]/g, '\\$&')}`, 'm');
+                    if (!sectionRegex.test(doc.content)) {
+                        qIndex++;
+                        categories.add('missing_section');
+                        questions.push({
+                            id: `Q${qIndex}`,
+                            question: `Required section "${section}" is missing. What content should it contain?`,
+                            category: 'missing_section',
+                            priority: 'high',
+                            section,
+                        });
+                    }
+                }
+            }
+            // Check for placeholder/vague content
+            const vagueMarkers = ['TBD', 'TODO', 'FIXME', 'as needed', 'to be determined', '<!-- '];
+            const lines = doc.content.split('\n');
+            let currentSection = '';
+            for (const line of lines) {
+                if (line.startsWith('## ')) {
+                    currentSection = line.replace('## ', '').trim();
+                }
+                for (const marker of vagueMarkers) {
+                    if (line.includes(marker)) {
+                        qIndex++;
+                        categories.add('vague_content');
+                        questions.push({
+                            id: `Q${qIndex}`,
+                            question: `Section "${currentSection}" contains placeholder text ("${marker}"). What specific content should replace it?`,
+                            category: 'vague_content',
+                            priority: 'medium',
+                            section: currentSection,
+                        });
+                        break;
+                    }
+                }
+            }
+            // Check for empty sections
+            const sectionRegex = /^## (.+)$/gm;
+            let match;
+            const sectionPositions = [];
+            while ((match = sectionRegex.exec(doc.content)) !== null) {
+                sectionPositions.push({ name: match[1].trim(), start: match.index + match[0].length });
+            }
+            for (let i = 0; i < sectionPositions.length; i++) {
+                const start = sectionPositions[i].start;
+                const end = i + 1 < sectionPositions.length ? sectionPositions[i + 1].start - sectionPositions[i + 1].name.length - 3 : doc.content.length;
+                const sectionContent = doc.content.slice(start, end).trim();
+                if (sectionContent.length < 10) {
+                    qIndex++;
+                    categories.add('empty_section');
+                    questions.push({
+                        id: `Q${qIndex}`,
+                        question: `Section "${sectionPositions[i].name}" appears to be empty or very brief. What details should be added?`,
+                        category: 'empty_section',
+                        priority: 'high',
+                        section: sectionPositions[i].name,
+                    });
+                }
+            }
+            // Check for unchecked acceptance criteria
+            const uncheckedCount = (doc.content.match(/- \[ \]/g) || []).length;
+            const checkedCount = (doc.content.match(/- \[x\]/gi) || []).length;
+            if (uncheckedCount > 0 && checkedCount === 0) {
+                qIndex++;
+                categories.add('acceptance_criteria');
+                questions.push({
+                    id: `Q${qIndex}`,
+                    question: `All ${uncheckedCount} acceptance criteria are unchecked. Have any been completed?`,
+                    category: 'acceptance_criteria',
+                    priority: 'low',
+                });
+            }
+            const result = {
+                questionsGenerated: questions.length,
+                categories: Array.from(categories),
+                questions,
+            };
+            if (options.json) {
+                console.log(JSON.stringify({ status: 'success', data: result }, null, 2));
+            }
+            else {
+                if (questions.length === 0) {
+                    console.log(chalk_1.default.green('No gaps found - document looks complete'));
+                }
+                else {
+                    console.log(chalk_1.default.yellow(`Found ${questions.length} potential gap(s):\n`));
+                    for (const q of questions) {
+                        const priorityColor = q.priority === 'high' ? chalk_1.default.red : q.priority === 'medium' ? chalk_1.default.yellow : chalk_1.default.gray;
+                        console.log(`  ${q.id} [${priorityColor(q.priority)}] ${q.question}`);
+                    }
+                }
+            }
+        }
+        catch (error) {
+            (0, errors_1.handleError)(error, options);
+        }
+    });
+}
+function createDocValidateFulfillmentCommand() {
+    return new commander_1.Command('doc-validate-fulfillment')
+        .description('Validate whether implementation fulfills the document\'s requirements')
+        .argument('<id>', 'Document ID')
+        .option('--json', 'Output as JSON')
+        .action(async (id, options) => {
+        try {
+            const docsManager = await (0, factory_1.getDocsManager)();
+            const doc = await docsManager.getDoc(id);
+            if (!doc) {
+                if (options.json) {
+                    console.error(JSON.stringify({ status: 'error', error: { code: 'DOC_NOT_FOUND', message: `Document not found: ${id}` } }, null, 2));
+                }
+                else {
+                    console.error(chalk_1.default.red(`Document not found: ${id}`));
+                }
+                process.exit(3);
+            }
+            // Load type for fulfillment config
+            const registry = await (0, factory_1.getDocTypeRegistry)();
+            const docType = doc.metadata.docType ? registry.getType(doc.metadata.docType) : null;
+            const fulfillmentConfig = docType?.fulfillment;
+            if (!fulfillmentConfig?.enabled) {
+                const msg = `Document type '${doc.metadata.docType || 'unknown'}' does not have fulfillment validation enabled.`;
+                if (options.json) {
+                    console.error(JSON.stringify({ status: 'error', error: { code: 'FULFILLMENT_NOT_ENABLED', message: msg } }, null, 2));
+                }
+                else {
+                    console.error(chalk_1.default.red(msg));
+                }
+                process.exit(1);
+            }
+            const checks = {};
+            let totalChecks = 0;
+            let passedChecks = 0;
+            // Check acceptance criteria
+            if (fulfillmentConfig.checkAcceptanceCriteria) {
+                totalChecks++;
+                const unchecked = (doc.content.match(/- \[ \]/g) || []).length;
+                const checked = (doc.content.match(/- \[x\]/gi) || []).length;
+                const total = unchecked + checked;
+                if (total === 0) {
+                    checks['acceptance_criteria'] = { status: 'warn', detail: 'No acceptance criteria checkboxes found' };
+                }
+                else if (unchecked === 0) {
+                    checks['acceptance_criteria'] = { status: 'pass', detail: `All ${total} criteria met` };
+                    passedChecks++;
+                }
+                else {
+                    checks['acceptance_criteria'] = { status: 'fail', detail: `${checked}/${total} criteria met (${unchecked} remaining)` };
+                }
+            }
+            // Check files modified (presence of Files to Modify section with content)
+            if (fulfillmentConfig.checkFilesModified) {
+                totalChecks++;
+                const filesSection = /## Files to Modify\s*\n([\s\S]*?)(?=\n## |\n$)/i.exec(doc.content);
+                if (filesSection && filesSection[1].trim().length > 10) {
+                    checks['files_modified'] = { status: 'pass', detail: 'Files to Modify section has content' };
+                    passedChecks++;
+                }
+                else {
+                    checks['files_modified'] = { status: 'warn', detail: 'Files to Modify section is missing or empty' };
+                }
+            }
+            // Check tests added (presence of testing section with content)
+            if (fulfillmentConfig.checkTestsAdded) {
+                totalChecks++;
+                const testSection = /## (?:Testing|Testing Strategy|Tests)\s*\n([\s\S]*?)(?=\n## |\n$)/i.exec(doc.content);
+                if (testSection && testSection[1].trim().length > 10) {
+                    checks['tests_added'] = { status: 'pass', detail: 'Testing section has content' };
+                    passedChecks++;
+                }
+                else {
+                    checks['tests_added'] = { status: 'warn', detail: 'Testing section is missing or empty' };
+                }
+            }
+            // Check docs updated
+            if (fulfillmentConfig.checkDocsUpdated) {
+                totalChecks++;
+                const updatedAt = doc.metadata.updatedAt;
+                if (updatedAt) {
+                    checks['docs_updated'] = { status: 'pass', detail: `Document last updated: ${updatedAt}` };
+                    passedChecks++;
+                }
+                else {
+                    checks['docs_updated'] = { status: 'warn', detail: 'No updatedAt timestamp found' };
+                }
+            }
+            const score = totalChecks > 0 ? Math.round((passedChecks / totalChecks) * 100) : 0;
+            const status = score >= 100 ? 'pass' : score >= 50 ? 'partial' : 'fail';
+            const result = { status, score, checks };
+            if (options.json) {
+                console.log(JSON.stringify({ status: 'success', data: result }, null, 2));
+            }
+            else {
+                const statusColor = status === 'pass' ? chalk_1.default.green : status === 'partial' ? chalk_1.default.yellow : chalk_1.default.red;
+                console.log(statusColor(`Fulfillment: ${status.toUpperCase()} (${score}%)\n`));
+                for (const [name, check] of Object.entries(checks)) {
+                    const checkColor = check.status === 'pass' ? chalk_1.default.green : check.status === 'warn' ? chalk_1.default.yellow : chalk_1.default.red;
+                    const icon = check.status === 'pass' ? '✓' : check.status === 'warn' ? '!' : '✗';
+                    console.log(`  ${checkColor(icon)} ${name}: ${check.detail}`);
+                }
+            }
+        }
+        catch (error) {
+            (0, errors_1.handleError)(error, options);
+        }
+    });
+}
 //# sourceMappingURL=doc.js.map

package/dist/commands/docs/doc.js.map

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package/dist/commands/docs/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/docs/index.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAIpC;;GAEG;AACH,wBAAgB,iBAAiB,IAAI,OAAO,CAgB3C"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/docs/index.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAIpC;;GAEG;AACH,wBAAgB,iBAAiB,IAAI,OAAO,CAqB3C"}

package/dist/commands/docs/index.js

@@ -23,6 +23,10 @@ function createDocsCommand() {
     docs.addCommand((0, doc_1.createDocUpdateCommand)());
     docs.addCommand((0, doc_1.createDocDeleteCommand)());
     docs.addCommand((0, doc_1.createDocSearchCommand)());
+    // Archive, refinement, and fulfillment operations
+    docs.addCommand((0, doc_1.createDocArchiveCommand)());
+    docs.addCommand((0, doc_1.createDocRefineScanCommand)());
+    docs.addCommand((0, doc_1.createDocValidateFulfillmentCommand)());
     // Type operations (flat with dashes)
     docs.addCommand((0, type_1.createTypeListCommand)());
     docs.addCommand((0, type_1.createTypeInfoCommand)());

package/dist/commands/docs/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/docs/index.ts"],"names":[],"mappings":";AAAA;;;;;;GAMG;;AASH,8CAgBC;AAvBD,yCAAoC;AACpC,+BAAkK;AAClK,iCAAsE;AAEtE;;GAEG;AACH,SAAgB,iBAAiB;IAC/B,MAAM,IAAI,GAAG,IAAI,mBAAO,CAAC,MAAM,CAAC,CAAC,WAAW,CAAC,0BAA0B,CAAC,CAAC;IAEzE,yCAAyC;IACzC,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAsB,GAAE,CAAC,CAAC;IAC1C,IAAI,CAAC,UAAU,CAAC,IAAA,yBAAmB,GAAE,CAAC,CAAC;IACvC,IAAI,CAAC,UAAU,CAAC,IAAA,0BAAoB,GAAE,CAAC,CAAC;IACxC,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAsB,GAAE,CAAC,CAAC;IAC1C,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAsB,GAAE,CAAC,CAAC;IAC1C,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAsB,GAAE,CAAC,CAAC;IAE1C,qCAAqC;IACrC,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAqB,GAAE,CAAC,CAAC;IACzC,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAqB,GAAE,CAAC,CAAC;IAEzC,OAAO,IAAI,CAAC;AACd,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/docs/index.ts"],"names":[],"mappings":";AAAA;;;;;;GAMG;;AASH,8CAqBC;AA5BD,yCAAoC;AACpC,+BAA4P;AAC5P,iCAAsE;AAEtE;;GAEG;AACH,SAAgB,iBAAiB;IAC/B,MAAM,IAAI,GAAG,IAAI,mBAAO,CAAC,MAAM,CAAC,CAAC,WAAW,CAAC,0BAA0B,CAAC,CAAC;IAEzE,yCAAyC;IACzC,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAsB,GAAE,CAAC,CAAC;IAC1C,IAAI,CAAC,UAAU,CAAC,IAAA,yBAAmB,GAAE,CAAC,CAAC;IACvC,IAAI,CAAC,UAAU,CAAC,IAAA,0BAAoB,GAAE,CAAC,CAAC;IACxC,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAsB,GAAE,CAAC,CAAC;IAC1C,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAsB,GAAE,CAAC,CAAC;IAC1C,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAsB,GAAE,CAAC,CAAC;IAE1C,kDAAkD;IAClD,IAAI,CAAC,UAAU,CAAC,IAAA,6BAAuB,GAAE,CAAC,CAAC;IAC3C,IAAI,CAAC,UAAU,CAAC,IAAA,gCAA0B,GAAE,CAAC,CAAC;IAC9C,IAAI,CAAC,UAAU,CAAC,IAAA,yCAAmC,GAAE,CAAC,CAAC;IAEvD,qCAAqC;IACrC,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAqB,GAAE,CAAC,CAAC;IACzC,IAAI,CAAC,UAAU,CAAC,IAAA,4BAAqB,GAAE,CAAC,CAAC;IAEzC,OAAO,IAAI,CAAC;AACd,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fractary/core-cli",
-  "version": "0.4.13",
+  "version": "0.4.16",
   "description": "CLI for Fractary Core SDK - work tracking, repository management, specifications, logging, file storage, and documentation",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
@@ -44,7 +44,7 @@
   "author": "Fractary Team",
   "license": "MIT",
   "dependencies": {
-    "@fractary/core": "^0.7.8",
+    "@fractary/core": "^0.7.9",
     "chalk": "^5.3.0",
     "cli-table3": "^0.6.5",
     "commander": "^11.1.0",