@fodx/codelens 2.1.0 → 2.1.1

package/README.md

@@ -46,6 +46,7 @@ to choose targets explicitly or re-run later:
 ```bash
 codelens install --target all --yes        # wire all agents
 codelens install --target claude,cursor    # wire specific agents
+codelens install --target cursor --location=local --yes  # reliable Cursor workspace attach
 codelens install --target auto --location=local   # project-local config
 codelens --print-config codex              # print a snippet, no writes
 codelens uninstall                         # remove from all agents
@@ -76,14 +77,19 @@ instead. All writes are idempotent and removable with `codelens uninstall`.
 | Host | target id | Config file (global → local) | Entry shape |
 |---|---|---|---|
 | Claude Code | `claude` | `~/.claude.json` → `.mcp.json` | `mcpServers.codelens = { command, args: [] }` |
-| Cursor | `cursor` | `~/.cursor/mcp.json` → `.cursor/mcp.json` | `mcpServers.codelens = { command, args: [] }` |
+| Cursor | `cursor` | `~/.cursor/mcp.json` → `.cursor/mcp.json` | global uses MCP Roots; local uses `mcpServers.codelens = { command, args: ["--cwd", "${workspaceFolder}"] }` |
 | Gemini CLI | `gemini` | `~/.gemini/settings.json` → `.gemini/settings.json` | `mcpServers.codelens = { command, args: [] }` |
 | opencode | `opencode` | `~/.config/opencode/opencode.json` → `./opencode.json` | `mcp.codelens = { type: "local", command: [cmd], enabled: true }` |
 | Codex CLI | `codex` | `~/.codex/config.toml` → `.codex/config.toml` | TOML `[mcp_servers.codelens]` block (`command`, `args = []`) |
 | Pi Coding Agent | `pi` | `pi install npm:@fodx/codelens` (loads `adapters/pi/codelens.extension.ts`) | Pi extension that bridges the MCP server via `pi.registerTool` |
 
 `command` is the absolute path to the installed `codelens` launcher (written by
-the installer); for a manual snippet use `npx -y @fodx/codelens`.
+the installer); for a manual snippet use `npx -y @fodx/codelens`. CodeLens uses
+root priority `--cwd` → MCP Roots → process cwd. **Project-local installs**
+(`--location=local`) attach the server to the workspace: Cursor uses
+`--cwd ${workspaceFolder}`, and other hosts pin the concrete workspace path.
+**Global installs** keep empty args and rely on MCP Roots, so prefer local
+install for any client that doesn't send Roots.
 
 **Routing instructions** are also written so the host prefers codelens tools for
 discovery over raw grep/read:

package/build/src/cli.js

@@ -16,6 +16,7 @@ import { scheduleAutoPrune } from "./index/autoprune.js";
 import { runInstall, runUninstall, printConfig, HOSTS } from "./installer/agents.js";
 import { VERSION } from "./version.js";
 import { checkUpgrade, performUpgrade } from "./upgrade.js";
+import { parseCwdArg, resolveCwd } from "./runtime/root.js";
 import { existsSync } from "node:fs";
 import { fileURLToPath } from "node:url";
 /**
@@ -58,10 +59,12 @@ function ensureActiveIndex(coreDb, repoRoot) {
         buildIndex(coreDb, scope);
 }
 export async function cli(args) {
+    const parsed = parseCwdArg(args);
+    args = parsed.args;
     const cmd = args[0];
-    const repoRoot = process.cwd();
+    const repoRoot = resolveCwd(parsed.cwd);
     if (!cmd || cmd === "--help" || cmd === "-h") {
-        console.log("codelens [current|index|search <q>|related <path>|stats|doctor|install|uninstall|upgrade|version]");
+        console.log("codelens [--cwd <path>] [current|index|search <q>|related <path>|stats|doctor|install|uninstall|upgrade|version]");
         return 0;
     }
     // ── DB-free commands (no repo/index needed) ──────────────────

package/build/src/cli.js.map

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package/build/src/installer/agents.js

@@ -2,6 +2,18 @@ import { readFileSync, writeFileSync, existsSync, mkdirSync, rmSync } from "node
 import { join, dirname } from "node:path";
 import { homedir } from "node:os";
 import { VERSION } from "../version.js";
+/**
+ * Args that attach the server to the workspace for LOCAL installs. Global
+ * installs return [] and rely on MCP Roots (a single global config must not pin
+ * one repo). Cursor expands `${workspaceFolder}`; other hosts have no portable
+ * variable, so we pin the concrete workspace root (the dir the local config is
+ * written into = process.cwd() at install time).
+ */
+function workspaceCwdArgs(hostId, loc) {
+    if (loc !== "local")
+        return [];
+    return hostId === "cursor" ? ["--cwd", "${workspaceFolder}"] : ["--cwd", process.cwd()];
+}
 const INSTRUCTIONS_START = `<!-- codelens routing start (managed by \`codelens install\`) -->`;
 const INSTRUCTIONS_END = `<!-- codelens routing end -->`;
 const CODEX_START = `# codelens routing start (managed by \`codelens install\`)`;
@@ -24,6 +36,7 @@ Raw \`grep\`/\`find\`/\`read\` is fine when:
 - the repo is tiny or familiar
 
 If a result has \`stale:true\` or \`freshness:"partial"\`, read that file directly before relying on indexed snippets/edges.
+If \`cl_current.inGitRepo\` is false or the repo path is not this workspace, report the setup issue and ask the user to run \`codelens install --target cursor --location local --yes\` from the workspace root; do not silently fall back to raw find/grep.
 Always use \`cl_expand\` or a raw read for the exact file you're about to edit.
 Results are scoped to the current branch; call \`cl_current\` after a
 \`git checkout\`. See \`docs/routing.md\`. Remove with: \`codelens uninstall\`.`;
@@ -166,10 +179,10 @@ class ClaudeCodeTarget {
     detect() {
         return existsSync(join(homedir(), ".claude.json")) || existsSync(join(homedir(), ".claude"));
     }
-    buildEntry(cmd) {
-        return { command: cmd, args: [] };
+    buildEntry(cmd, loc) {
+        return { command: cmd, args: workspaceCwdArgs(this.id, loc) };
     }
-    apply(cmd, loc) { return jsonApply(this.configPath(loc), "mcpServers", this.entryKey, this.buildEntry(cmd)); }
+    apply(cmd, loc) { return jsonApply(this.configPath(loc), "mcpServers", this.entryKey, this.buildEntry(cmd, loc)); }
     remove(loc) { return jsonRemove(this.configPath(loc), "mcpServers", this.entryKey); }
     commandsDir(loc) {
         return loc === "global" ? join(homedir(), ".claude", "commands") : join(process.cwd(), ".claude", "commands");
@@ -207,8 +220,8 @@ alwaysApply: true
 ` + INSTRUCTIONS_BODY;
     }
     detect() { return existsSync(join(homedir(), ".cursor")); }
-    buildEntry(cmd) { return { command: cmd, args: [] }; }
-    apply(cmd, loc) { return jsonApply(this.configPath(loc), "mcpServers", this.entryKey, this.buildEntry(cmd)); }
+    buildEntry(cmd, loc) { return { command: cmd, args: workspaceCwdArgs(this.id, loc) }; }
+    apply(cmd, loc) { return jsonApply(this.configPath(loc), "mcpServers", this.entryKey, this.buildEntry(cmd, loc)); }
     remove(loc) { return jsonRemove(this.configPath(loc), "mcpServers", this.entryKey); }
 }
 class GeminiTarget {
@@ -222,8 +235,8 @@ class GeminiTarget {
         return loc === "global" ? join(homedir(), ".gemini", "GEMINI.md") : join(process.cwd(), "GEMINI.md");
     }
     detect() { return existsSync(join(homedir(), ".gemini")); }
-    buildEntry(cmd) { return { command: cmd, args: [] }; }
-    apply(cmd, loc) { return jsonApply(this.configPath(loc), "mcpServers", this.entryKey, this.buildEntry(cmd)); }
+    buildEntry(cmd, loc) { return { command: cmd, args: workspaceCwdArgs(this.id, loc) }; }
+    apply(cmd, loc) { return jsonApply(this.configPath(loc), "mcpServers", this.entryKey, this.buildEntry(cmd, loc)); }
     remove(loc) { return jsonRemove(this.configPath(loc), "mcpServers", this.entryKey); }
 }
 class OpencodeTarget {
@@ -238,15 +251,15 @@ class OpencodeTarget {
         return loc === "global" ? join(homedir(), ".config", "opencode", "AGENTS.md") : join(process.cwd(), "AGENTS.md");
     }
     detect() { return existsSync(join(homedir(), ".config", "opencode")) || existsSync(join(process.cwd(), "opencode.json")); }
-    buildEntry(cmd) {
-        return { type: "local", command: [cmd], enabled: true };
+    buildEntry(cmd, loc) {
+        return { type: "local", command: [cmd, ...workspaceCwdArgs(this.id, loc)], enabled: true };
     }
     apply(cmd, loc) {
         // opencode uses a "mcp" object whose values are {type, command, enabled}.
         const path = this.configPath(loc);
         const cfg = existsSync(path) ? readJson(path) : {};
         const mcp = (cfg["mcp"] ?? {});
-        const entry = this.buildEntry(cmd);
+        const entry = this.buildEntry(cmd, loc);
         if (deepEqualJson(mcp[this.entryKey], entry))
             return { wrote: false, path, already: true };
         mcp[this.entryKey] = entry;
@@ -282,8 +295,9 @@ class CodexTarget {
     }
     detect() { return existsSync(join(homedir(), ".codex")); }
     buildEntry(_cmd) { return null; } // TOML; use tomlBlock()
-    tomlBlock(cmd) {
-        return `${CODEX_START}\n[mcp_servers.codelens]\ncommand = "${cmd.replace(/"/g, '\\"')}"\nargs = []\n${CODEX_END}`;
+    tomlBlock(cmd, loc) {
+        const args = workspaceCwdArgs(this.id, loc);
+        return `${CODEX_START}\n[mcp_servers.codelens]\ncommand = "${cmd.replace(/"/g, '\\"')}"\nargs = ${JSON.stringify(args)}\n${CODEX_END}`;
     }
     apply(cmd, loc) {
         const path = this.configPath(loc);
@@ -293,7 +307,7 @@ class CodexTarget {
             existing = readFileSync(path, "utf-8");
         }
         catch { /* none */ }
-        const block = this.tomlBlock(cmd);
+        const block = this.tomlBlock(cmd, loc);
         const startIdx = existing.indexOf(CODEX_START);
         if (startIdx >= 0) {
             const endIdx = existing.indexOf(CODEX_END, startIdx);
@@ -443,11 +457,11 @@ export function printConfig(hostId, serverCommand, loc = "global") {
     if (!h)
         return null;
     if (h.id === "codex")
-        return h.tomlBlock(serverCommand);
+        return h.tomlBlock(serverCommand, loc);
     if (h.id === "pi") {
         return `# Pi supports MCP via a TS extension bridge. Add an MCP extension manifest\n# (see adapters/pi/extension.json) pointing at: ${serverCommand}`;
     }
-    const entry = h.buildEntry(serverCommand);
+    const entry = h.buildEntry(serverCommand, loc);
     const key = h.id === "opencode" ? "mcp" : "mcpServers";
     const cfg = { [key]: { [h.entryKey]: entry } };
     return `${h.configPath(loc)}:\n${JSON.stringify(cfg, null, 2)}`;

package/build/src/installer/agents.js.map

@@ -1 +1 @@
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package/build/src/runtime/root.js

@@ -0,0 +1,31 @@
+import { existsSync } from "node:fs";
+import { resolveReal } from "../util/paths.js";
+/** Strip a global --cwd option before CLI/MCP dispatch. */
+export function parseCwdArg(args) {
+    const rest = [];
+    let cwd;
+    for (let i = 0; i < args.length; i++) {
+        const arg = args[i];
+        if (arg === "--cwd") {
+            cwd = args[++i];
+        }
+        else if (arg.startsWith("--cwd=")) {
+            cwd = arg.slice("--cwd=".length);
+        }
+        else {
+            rest.push(arg);
+        }
+    }
+    return { cwd, args: rest };
+}
+/** True when an explicit --cwd value is usable (exists and not an unexpanded template). */
+export function isUsableCwd(cwd) {
+    return !!cwd && !cwd.includes("${") && existsSync(cwd);
+}
+/** Resolve a user/client-provided cwd, falling back when a host leaves template variables unexpanded. */
+export function resolveCwd(cwd, fallback = process.cwd()) {
+    if (!isUsableCwd(cwd))
+        return resolveReal(fallback);
+    return resolveReal(cwd);
+}
+//# sourceMappingURL=root.js.map

package/build/src/runtime/root.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"root.js","sourceRoot":"","sources":["../../../src/runtime/root.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AAO/C,2DAA2D;AAC3D,MAAM,UAAU,WAAW,CAAC,IAAc;IACxC,MAAM,IAAI,GAAa,EAAE,CAAC;IAC1B,IAAI,GAAuB,CAAC;IAC5B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACrC,MAAM,GAAG,GAAG,IAAI,CAAC,CAAC,CAAE,CAAC;QACrB,IAAI,GAAG,KAAK,OAAO,EAAE,CAAC;YACpB,GAAG,GAAG,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;QAClB,CAAC;aAAM,IAAI,GAAG,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;YACpC,GAAG,GAAG,GAAG,CAAC,KAAK,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;QACnC,CAAC;aAAM,CAAC;YACN,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACjB,CAAC;IACH,CAAC;IACD,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;AAC7B,CAAC;AAED,2FAA2F;AAC3F,MAAM,UAAU,WAAW,CAAC,GAAuB;IACjD,OAAO,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,UAAU,CAAC,GAAG,CAAC,CAAC;AACzD,CAAC;AAED,yGAAyG;AACzG,MAAM,UAAU,UAAU,CAAC,GAAuB,EAAE,QAAQ,GAAG,OAAO,CAAC,GAAG,EAAE;IAC1E,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC;QAAE,OAAO,WAAW,CAAC,QAAQ,CAAC,CAAC;IACpD,OAAO,WAAW,CAAC,GAAI,CAAC,CAAC;AAC3B,CAAC"}

package/build/src/server.js

@@ -12,10 +12,13 @@ import { FileWatcher } from "./index/watcher.js";
 import { cli } from "./cli.js";
 import { registerWatcher } from "./index/reindex.js";
 import { VERSION } from "./version.js";
+import { detectScope } from "./git/scope.js";
+import { parseCwdArg, resolveCwd, isUsableCwd } from "./runtime/root.js";
 import { createHash } from "node:crypto";
-import { mkdirSync } from "node:fs";
+import { mkdirSync, rmSync } from "node:fs";
 import { homedir } from "node:os";
 import { join } from "node:path";
+import { fileURLToPath } from "node:url";
 /**
  * CodeLens MCP server (Step 24 wiring).
  *
@@ -23,12 +26,14 @@ import { join } from "node:path";
  * (separate file), registers all tools from the registry, and starts the stdio
  * transport. Auto-prune runs on startup + periodic idle timer.
  */
-function createServer(ctx) {
+function createServer(ctx, beforeTool) {
     const server = new McpServer({ name: "codelens", version: VERSION });
     for (const tool of TOOLS) {
         server.tool(tool.name, tool.description, tool.schema, async (args) => {
             const usage = new UsageTracker(openGlobalUsageDb());
             try {
+                if (beforeTool)
+                    await beforeTool();
                 const result = await tool.handler(ctx, args);
                 const text = JSON.stringify(result);
                 let savedOverride;
@@ -60,8 +65,8 @@ function createServer(ctx) {
     }
     return server;
 }
-function repoRootFromCwd() {
-    return resolveReal(process.cwd());
+function repoRootFromCwd(cwd) {
+    return resolveCwd(cwd);
 }
 const CLI_COMMANDS = new Set(["current", "index", "refresh", "search", "related", "stats", "usage", "doctor", "install", "uninstall", "upgrade", "version", "--print-config", "-v", "--version", "--help", "-h"]);
 export async function main() {
@@ -69,10 +74,11 @@ export async function main() {
     // `install` or a flag-style one like `--print-config`/`--version`), run the
     // CLI with the FULL arg list so --target/--command/--yes are preserved.
     // Otherwise start the MCP stdio server.
-    const fullArgs = process.argv.slice(2);
+    const parsed = parseCwdArg(process.argv.slice(2));
+    const fullArgs = parsed.args;
     const head = fullArgs[0];
     if (head && CLI_COMMANDS.has(head)) {
-        const code = await cli(fullArgs);
+        const code = await cli(process.argv.slice(2));
         process.exit(code);
         return;
     }
@@ -84,7 +90,48 @@ export async function main() {
         console.log(JSON.stringify({ ok: true, tools: TOOLS.map((t) => t.name) }));
         return;
     }
-    const repoRoot = repoRootFromCwd();
+    const initialRoot = repoRootFromCwd(parsed.cwd);
+    const runtime = openRuntime(initialRoot);
+    const ctx = runtime.ctx;
+    let watcher = runtime.watcher;
+    let stopPrune = runtime.stopPrune;
+    // Only treat root resolution as settled when an explicit, usable --cwd was
+    // given. If --cwd was missing/unusable (e.g. unexpanded ${workspaceFolder}),
+    // we fell back to process.cwd() and should still query MCP Roots.
+    let rootsChecked = isUsableCwd(parsed.cwd);
+    const serverRef = {};
+    async function switchRoot(repoRoot) {
+        if (repoRoot === ctx.repoRoot)
+            return;
+        // Open the new runtime first; only tear down the old one if it succeeds, so
+        // a failure (e.g. DB permission error) leaves the working root intact.
+        const next = openRuntime(repoRoot);
+        watcher.stop();
+        stopPrune();
+        ctx.coreDb.close();
+        ctx.ctxDb.close();
+        ctx.repoRoot = next.ctx.repoRoot;
+        ctx.coreDb = next.ctx.coreDb;
+        ctx.ctxDb = next.ctx.ctxDb;
+        watcher = next.watcher;
+        stopPrune = next.stopPrune;
+    }
+    async function beforeTool() {
+        if (rootsChecked)
+            return;
+        rootsChecked = true;
+        if (!serverRef.current)
+            return;
+        const root = await rootFromMcpRoots(serverRef.current);
+        if (root)
+            await switchRoot(root);
+    }
+    const server = createServer(ctx, beforeTool);
+    serverRef.current = server;
+    const transport = new StdioServerTransport();
+    await server.connect(transport);
+}
+function openRuntime(repoRoot) {
     let coreDb;
     try {
         coreDb = openDb(dbPathFor(repoRoot));
@@ -92,7 +139,6 @@ export async function main() {
     catch (err) {
         if (err instanceof CorruptDb) {
             // Production recovery: delete the corrupt DB file and rebuild on next refresh.
-            const { rmSync } = await import("node:fs");
             try {
                 rmSync(dbPathFor(repoRoot));
             }
@@ -104,14 +150,29 @@ export async function main() {
         }
     }
     const ctxDb = openContextDb(repoRoot);
-    const ctx = { coreDb, ctxDb, repoRoot };
-    scheduleAutoPrune(coreDb);
+    const stopPrune = scheduleAutoPrune(coreDb);
     const watcher = new FileWatcher(repoRoot);
     watcher.start();
     registerWatcher(watcher);
-    const server = createServer(ctx);
-    const transport = new StdioServerTransport();
-    await server.connect(transport);
+    return { ctx: { coreDb, ctxDb, repoRoot }, watcher, stopPrune };
+}
+async function rootFromMcpRoots(server) {
+    try {
+        if (!server.server.getClientCapabilities()?.roots)
+            return null;
+        const result = await server.server.listRoots(undefined, { timeout: 1000 });
+        for (const root of result.roots) {
+            if (!root.uri.startsWith("file://"))
+                continue;
+            const candidate = resolveReal(fileURLToPath(root.uri));
+            if (detectScope(candidate))
+                return candidate;
+        }
+    }
+    catch {
+        // Best-effort only. Fallback remains explicit --cwd or process.cwd().
+    }
+    return null;
 }
 function dbPathFor(repoRoot) {
     const dir = join(homedir(), ".codelens", "indexes");

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package/docs/routing.md

@@ -25,6 +25,12 @@ reads from disk — never stale), and `cl_save`/`cl_load` to persist working
 context across compaction. If a query result has `stale:true`, read that file
 from disk before relying on indexed snippets/edges.
 
+If `cl_current.inGitRepo` is false or `repo` points outside the current
+workspace, CodeLens is not attached to this workspace. Report the setup issue and
+ask the user to run `codelens install --target cursor --location local --yes`
+from the workspace root (or restart the MCP server after roots attach). Do not
+silently fall back to raw `find`/`grep` for discovery.
+
 ## When raw grep/find/read is fine (or better)
 
 - you already know an exact string/symbol/path
@@ -42,7 +48,9 @@ you're looking for.
 Results are scoped to the **current branch/worktree index only** by default.
 After `git checkout`, results will not leak from the old branch. If you switch
 branches mid-task, call `cl_current` again; the tool activates/creates the new
-branch's index automatically.
+branch's index automatically. MCP clients that provide Roots let CodeLens attach
+to the active workspace even from a global MCP config; otherwise use `--cwd` or
+project-local MCP config.
 
 ## Freshness
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fodx/codelens",
-  "version": "2.1.0",
+  "version": "2.1.1",
   "description": "Local, branch-aware code search & relation graph. SQLite FTS5 + tree-sitter symbols + source-graph edges, exposed as an MCP server and CLI. No chat LLM required.",
   "license": "MIT",
   "type": "module",