npm - @fodx/codelens - Versions diffs - 2.0.1 → 2.1.0 - Mend

@fodx/codelens 2.0.1 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (17) hide show

package/README.md +10 -8
package/adapters/pi/extension.json +1 -1
package/build/src/installer/agents.js +8 -4
package/build/src/installer/agents.js.map +1 -1
package/build/src/obs/usage.js +33 -5
package/build/src/obs/usage.js.map +1 -1
package/build/src/server.js +2 -2
package/build/src/tools/explore.js +40 -3
package/build/src/tools/explore.js.map +1 -1
package/build/src/tools/impact.js +22 -5
package/build/src/tools/impact.js.map +1 -1
package/build/src/tools/registry.js +7 -1
package/build/src/tools/registry.js.map +1 -1
package/docs/how-it-works.md +154 -0
package/docs/tools.md +4 -4
package/docs/usage-metrics.md +89 -0
package/package.json +5 -2

package/README.md CHANGED Viewed

@@ -23,10 +23,10 @@ Cursor, Gemini CLI, opencode, Codex CLI) or directly from the terminal.
 - **Durable** — saved contexts live in a separate DB and survive index rebuilds.
 - **Self-cleaning** — automatic TTL prunes inactive indexes.
-## Install (one command)
+## Install
-The installer builds the tool, puts `codelens` on your PATH, and wires the
-MCP server into your agents/IDEs automatically (Claude Code, Cursor, Gemini CLI,
+One command builds the tool, installs the `codelens` launcher, and wires the MCP
+server into detected agents/IDEs automatically (Claude Code, Cursor, Gemini CLI,
 opencode, Codex CLI). Requires Node.js ≥ 22.5.
 **macOS / Linux:**
@@ -39,9 +39,9 @@ curl -fsSL https://raw.githubusercontent.com/ex-git/codeLens/main/install.sh | s
 irm https://raw.githubusercontent.com/ex-git/codeLens/main/install.ps1 | iex
 ```
-Then open a new terminal (so PATH picks up) and the agents you use are configured.
-The installer wires the MCP server into every detected agent; to choose
-explicitly or re-run later:
+After it finishes, open a new terminal so your shell picks up the newly installed
+`codelens` command. The agents detected during install are already configured;
+to choose targets explicitly or re-run later:
 ```bash
 codelens install --target all --yes        # wire all agents
@@ -188,6 +188,7 @@ npm test            # vitest run
 npm run build       # tsc + copy schema assets
 npm run benchmark   # performance gate (search <50ms, cold <3s)
 npm run quality     # retrieval-quality fixture (recall@5/MRR/top-1/latency)
+npm run eval:agent  # deterministic with/without-CodeLens discovery proxy
 ```
 ## Docs
@@ -207,8 +208,9 @@ npm run quality     # retrieval-quality fixture (recall@5/MRR/top-1/latency)
   incremental + the file watcher thereafter (cold index ~3.5s for 2000 files).
 - **Routing hooks are advisory** (soft nudges, not hard blocks) per the no-
   throttling design decision — raw reads remain allowed for editing/verification.
-- **npm package** — published automatically from `v*` git tags via the
-  `publish` workflow; `npx -y @fodx/codelens` works once a tag is pushed. See
+- **npm package** — published on npm as `@fodx/codelens`; releases are
+  published automatically from `v*` git tags via the `publish` workflow. Use
+  `npx -y @fodx/codelens` for manual MCP configuration. See
   `.github/workflows/publish.yml`.
 - **Windows not tested** — path normalization handles backslashes, but `fs.watch`
   recursive behavior and native builds are unverified on Windows.

package/adapters/pi/extension.json CHANGED Viewed

@@ -6,5 +6,5 @@
     "command": "npx",
     "args": ["-y", "@fodx/codelens"]
   },
-  "description": "Branch-aware code search & relation graph (MCP server + CLI). Routes agents to cl_search/cl_related/cl_expand instead of raw grep/read."
+  "description": "Branch-aware code search & relation graph (MCP server + CLI). Routes agents to cl_explore/cl_search/cl_related/cl_impact/cl_expand instead of raw grep/read."
 }

package/build/src/installer/agents.js CHANGED Viewed

@@ -8,13 +8,14 @@ const CODEX_START = `# codelens routing start (managed by \`codelens install\`)`
 const CODEX_END = `# codelens routing end`;
 const INSTRUCTIONS_BODY = `# CodeLens routing
-Prefer the codelens MCP tools (\`cl_search\`, \`cl_related\`, \`cl_expand\`,
-\`cl_map\`, \`cl_save\`, \`cl_load\`) for code discovery — they keep context lean
-and are branch-scoped.
+Prefer the codelens MCP tools (\`cl_search\`, \`cl_explore\`, \`cl_related\`,
+\`cl_impact\`, \`cl_expand\`, \`cl_map\`, \`cl_save\`, \`cl_load\`) for code
+discovery — they keep context lean and are branch-scoped.
 Use codelens when:
 - you don't know the exact name/string (semantic or conceptual search)
-- you need relationships (importers, tests, callers) or a file outline
+- you need broad orientation in one call (\`cl_explore\`)
+- you need relationships (importers, tests, callers), blast radius before edits (\`cl_impact\`), or a file outline
 - the repo is large or unfamiliar, or you'd otherwise grep + read many files
 Raw \`grep\`/\`find\`/\`read\` is fine when:
@@ -22,6 +23,7 @@ Raw \`grep\`/\`find\`/\`read\` is fine when:
 - you're reading or editing a single known file
 - the repo is tiny or familiar
+If a result has \`stale:true\` or \`freshness:"partial"\`, read that file directly before relying on indexed snippets/edges.
 Always use \`cl_expand\` or a raw read for the exact file you're about to edit.
 Results are scoped to the current branch; call \`cl_current\` after a
 \`git checkout\`. See \`docs/routing.md\`. Remove with: \`codelens uninstall\`.`;
@@ -178,6 +180,8 @@ class ClaudeCodeTarget {
             { name: "codelens-stats.md", content: "Call the `cl_stats` MCP tool and report the current index statistics (files/symbols/chunks/edges)." },
             { name: "codelens-doctor.md", content: "Call the `cl_doctor` MCP tool and report the health check results." },
             { name: "codelens-search.md", content: "Call the `cl_search` MCP tool with query: $ARGUMENTS (limit 5). Show the ranked handles." },
+            { name: "codelens-explore.md", content: "Call the `cl_explore` MCP tool with query: $ARGUMENTS (limit 8). Summarize grouped files and relationships." },
+            { name: "codelens-impact.md", content: "Call the `cl_impact` MCP tool for symbol/path: $ARGUMENTS. Summarize callers, callees, affected files, and affected tests." },
             { name: "codelens-refresh.md", content: "Call the `cl_refresh` MCP tool to build/update the current branch index, then report the result." },
         ];
     }

package/build/src/installer/agents.js.map CHANGED Viewed

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package/build/src/obs/usage.js CHANGED Viewed

@@ -11,17 +11,17 @@ import { join } from "node:path";
  * can show both totals and a per-repo breakdown.
  *
  * "bytes_saved" is a defensible estimate for DISCOVERY tools (cl_search,
- * cl_related): the agent would otherwise grep + read ~N files at ~avg file
+ * cl_explore, cl_related, cl_impact): the agent would otherwise grep + read ~N files at ~avg file
  * size; instead it got compact handles. saved ≈ max(0, N*AVG_FILE_BYTES -
  * bytesServed). Non-discovery tools record calls + bytes_served but claim no
  * savings.
  */
 const AVG_FILE_BYTES = 4096;
-export const DISCOVERY_TOOLS = new Set(["cl_search", "cl_related"]);
+export const DISCOVERY_TOOLS = new Set(["cl_search", "cl_explore", "cl_related", "cl_impact"]);
 /** Tools that count as "usage" (retrieval + context management). Operational
  *  tools (refresh/doctor/stats/prune/drop/current/usage) are NOT tracked — they
  *  are maintenance, not the agent using the retrieval system. */
-export const TRACKED_TOOLS = new Set(["cl_search", "cl_related", "cl_expand", "cl_save", "cl_load"]);
+export const TRACKED_TOOLS = new Set(["cl_search", "cl_explore", "cl_related", "cl_impact", "cl_expand", "cl_save", "cl_load"]);
 function usageDbPath() {
     const dir = join(homedir(), ".codelens");
     mkdirSync(dir, { recursive: true });
@@ -99,9 +99,15 @@ export class UsageTracker {
     reset() { this.db.prepare("DELETE FROM tool_usage").run(); }
 }
 function countHandles(tool, resultText) {
-    void tool;
     try {
         const obj = JSON.parse(resultText);
+        if (tool === "cl_explore")
+            return Array.isArray(obj.files) ? obj.files.length : 0;
+        if (tool === "cl_impact") {
+            return [obj.callers, obj.callees, obj.affectedFiles, obj.affectedTests, obj.candidates]
+                .filter(Array.isArray)
+                .reduce((n, arr) => n + arr.length, 0);
+        }
         return Array.isArray(obj.results) ? obj.results.length : 0;
     }
     catch {
@@ -126,7 +132,29 @@ export function estimateSavedFromPaths(db, indexId, paths, bytesServed, cap = 50
 export function extractDiscoveryPaths(resultText) {
     try {
         const obj = JSON.parse(resultText);
-        return (obj.results ?? []).map((r) => r.path).filter((p) => typeof p === "string");
+        const paths = [];
+        if (typeof obj.path === "string")
+            paths.push(obj.path);
+        if (typeof obj.target?.path === "string")
+            paths.push(obj.target.path);
+        for (const r of obj.results ?? [])
+            if (typeof r.path === "string")
+                paths.push(r.path);
+        for (const f of obj.files ?? [])
+            if (typeof f.path === "string")
+                paths.push(f.path);
+        for (const r of obj.related ?? []) {
+            if (typeof r.sourcePath === "string")
+                paths.push(r.sourcePath);
+            if (typeof r.path === "string")
+                paths.push(r.path);
+        }
+        for (const arr of [obj.candidates, obj.callers, obj.callees, obj.affectedFiles, obj.affectedTests]) {
+            for (const r of arr ?? [])
+                if (typeof r.path === "string")
+                    paths.push(r.path);
+        }
+        return paths;
     }
     catch {
         return [];

package/build/src/obs/usage.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/build/src/server.js CHANGED Viewed

@@ -20,8 +20,8 @@ import { join } from "node:path";
  * CodeLens MCP server (Step 24 wiring).
  *
  * Resolves the repo root from cwd, opens the core index DB and the contexts DB
- * (separate file), registers all 10 tools from the registry, and starts the
- * stdio transport. Auto-prune runs on startup + periodic idle timer.
+ * (separate file), registers all tools from the registry, and starts the stdio
+ * transport. Auto-prune runs on startup + periodic idle timer.
  */
 function createServer(ctx) {
     const server = new McpServer({ name: "codelens", version: VERSION });

package/build/src/tools/explore.js CHANGED Viewed

@@ -3,9 +3,17 @@ import { getPendingPaths } from "../index/staleness.js";
 import { neighbors } from "../graph/query.js";
 import { ctxSearch } from "./search.js";
 const DEFAULT_LIMIT = 8;
+const DEFAULT_MAX_FILES = 6;
+const DEFAULT_MAX_RESULTS_PER_FILE = 3;
+const DEFAULT_MAX_RELATED = 20;
 const DEFAULT_RELATED_DEPTH = 1;
 const MAX_RELATED_DEPTH = 3;
 const RELATED_SOURCE_LIMIT = 3;
+function clampPositive(value, fallback, max) {
+    if (value === undefined)
+        return fallback;
+    return Math.min(Math.max(1, Math.floor(value)), max);
+}
 function signatureFor(db, indexId, handle) {
     if (!handle)
         return undefined;
@@ -73,10 +81,28 @@ export function ctxExplore(db, query, opts) {
             file.results.push(toExploreItem(hit));
         }
     }
+    const maxFiles = clampPositive(opts?.maxFiles, DEFAULT_MAX_FILES, 50);
+    const maxResultsPerFile = clampPositive(opts?.maxResultsPerFile, DEFAULT_MAX_RESULTS_PER_FILE, 20);
+    const maxRelated = clampPositive(opts?.maxRelated, DEFAULT_MAX_RELATED, 100);
+    let omittedResults = 0;
+    for (const file of byFile.values()) {
+        file.results.sort((a, b) => b.score - a.score || a.lines.localeCompare(b.lines));
+        if (file.results.length > maxResultsPerFile) {
+            omittedResults += file.results.length - maxResultsPerFile;
+            file.results = file.results.slice(0, maxResultsPerFile);
+        }
+    }
+    const orderedFiles = [...byFile.values()].sort((a, b) => {
+        const aScore = a.results[0]?.score ?? 0;
+        const bScore = b.results[0]?.score ?? 0;
+        return bScore - aScore || a.path.localeCompare(b.path);
+    });
+    const omittedFiles = Math.max(0, orderedFiles.length - maxFiles);
+    const files = orderedFiles.slice(0, maxFiles);
     const relatedDepth = Math.min(Math.max(1, opts?.relatedDepth ?? DEFAULT_RELATED_DEPTH), MAX_RELATED_DEPTH);
     const related = [];
     const seenRelated = new Set();
-    for (const sourcePath of [...byFile.keys()].slice(0, RELATED_SOURCE_LIMIT)) {
+    for (const sourcePath of files.map((f) => f.path).slice(0, RELATED_SOURCE_LIMIT)) {
         try {
             for (const n of neighbors(db, indexId, sourcePath, { types: ["imports", "imported_by", "tests", "calls", "references"], depth: relatedDepth })) {
                 const key = `${sourcePath}\0${n.path}\0${n.edgeType}\0${n.hops}`;
@@ -93,14 +119,25 @@ export function ctxExplore(db, query, opts) {
             // Graph is best-effort; search results remain useful without it.
         }
     }
+    related.sort((a, b) => a.hops - b.hops || b.confidence - a.confidence || a.sourcePath.localeCompare(b.sourcePath) || a.path.localeCompare(b.path));
+    const omittedRelated = Math.max(0, related.length - maxRelated);
     const out = {
         indexId,
         query: search.query,
         count: search.count,
-        files: [...byFile.values()],
-        related,
+        files,
+        related: related.slice(0, maxRelated),
         freshness: search.freshness,
     };
+    const truncated = {};
+    if (omittedFiles > 0)
+        truncated.files = omittedFiles;
+    if (omittedResults > 0)
+        truncated.results = omittedResults;
+    if (omittedRelated > 0)
+        truncated.related = omittedRelated;
+    if (Object.keys(truncated).length > 0)
+        out.truncated = truncated;
     if (search.pendingFiles !== undefined)
         out.pendingFiles = search.pendingFiles;
     if (search.nextCursor)

package/build/src/tools/explore.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/build/src/tools/impact.js CHANGED Viewed

@@ -6,13 +6,22 @@ const MAX_DEPTH = 3;
 function clampDepth(depth) {
     return Math.min(Math.max(1, depth ?? DEFAULT_DEPTH), MAX_DEPTH);
 }
-function staleAware(indexId, n) {
+function confidenceLabel(confidence) {
+    if (confidence >= 0.8)
+        return "high";
+    if (confidence >= 0.5)
+        return "medium";
+    return "low";
+}
+function staleAware(indexId, n, provenance = "graph") {
     const item = {
         handle: `rel:${n.path}`,
         path: n.path,
         edgeType: n.edgeType,
         hops: n.hops,
         confidence: n.confidence,
+        provenance,
+        confidenceLabel: confidenceLabel(n.confidence),
     };
     if (getPendingPaths(indexId).has(n.path))
         item.stale = true;
@@ -30,7 +39,7 @@ function uniq(handles) {
             byKey.set(key, h);
         }
     }
-    return [...byKey.values()].sort((a, b) => a.hops - b.hops || b.confidence - a.confidence || a.path.localeCompare(b.path));
+    return [...byKey.values()].sort((a, b) => a.hops - b.hops || b.confidence - a.confidence || a.edgeType.localeCompare(b.edgeType) || a.path.localeCompare(b.path));
 }
 function resolveSymbol(db, indexId, symbol, path) {
     const pathClause = path ? " AND path = ?" : "";
@@ -48,6 +57,7 @@ function resolveSymbol(db, indexId, symbol, path) {
 function candidateFrom(row, stale) {
     const c = {
         id: row.id,
+        symbolId: row.id,
         path: row.path,
         symbol: row.name,
         kind: row.kind,
@@ -67,6 +77,7 @@ function targetFrom(row, path, stale) {
     }
     const target = {
         path: row.path,
+        symbolId: row.id,
         symbol: row.name,
         kind: row.kind,
         signature: row.signature,
@@ -137,8 +148,8 @@ export function ctxImpact(db, opts) {
         ? uniq([
             ...testsFor(db, indexId, targetPath).map((n) => staleAware(indexId, n)),
             ...affectedFiles.flatMap((f) => testsFor(db, indexId, f.path).map((n) => staleAware(indexId, n))),
-            ...affectedFiles.filter((f) => isTestPath(f.path)).map((f) => ({ ...f, edgeType: "tests" })),
-            ...callers.filter((f) => isTestPath(f.path)).map((f) => ({ ...f, edgeType: "tests" })),
+            ...affectedFiles.filter((f) => isTestPath(f.path)).map((f) => ({ ...f, edgeType: "tests", confidence: Math.min(f.confidence, 0.6), confidenceLabel: "medium", provenance: "path-heuristic" })),
+            ...callers.filter((f) => isTestPath(f.path)).map((f) => ({ ...f, edgeType: "tests", confidence: Math.min(f.confidence, 0.6), confidenceLabel: "medium", provenance: "path-heuristic" })),
         ])
         : [];
     const out = {
@@ -149,7 +160,13 @@ export function ctxImpact(db, opts) {
         affectedFiles,
         affectedTests,
         depth,
-        confidenceNote: "Impact is derived from indexed file/symbol edges. calls/references are currently strongest for TS/JS; lower-confidence or sparse languages may need cl_search/cl_expand follow-up.",
+        summary: {
+            callers: callers.length,
+            callees: callees.length,
+            affectedFiles: affectedFiles.length,
+            affectedTests: affectedTests.length,
+        },
+        confidenceNote: "Impact is derived from indexed file/symbol edges. calls/references are currently strongest for TS/JS; path-heuristic tests are conservative and lower-confidence; sparse languages may need cl_search/cl_expand follow-up.",
         freshness: pendingPaths.size > 0 ? "partial" : "fresh",
     };
     if (pendingPaths.size > 0)

package/build/src/tools/impact.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"impact.js","sourceRoot":"","sources":["../../../src/tools/impact.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AACjE,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAsB,MAAM,mBAAmB,CAAC;AA4D5E,MAAM,aAAa,GAAG,CAAC,CAAC;AACxB,MAAM,SAAS,GAAG,CAAC,CAAC;AAEpB,SAAS,UAAU,CAAC,KAAc;IAChC,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,IAAI,aAAa,CAAC,EAAE,SAAS,CAAC,CAAC;AAClE,CAAC;AAED,SAAS,eAAe,CAAC,UAAkB;IACzC,IAAI,UAAU,IAAI,GAAG;QAAE,OAAO,MAAM,CAAC;IACrC,IAAI,UAAU,IAAI,GAAG;QAAE,OAAO,QAAQ,CAAC;IACvC,OAAO,KAAK,CAAC;AACf,CAAC;AAED,SAAS,UAAU,CAAC,OAAe,EAAE,CAAgB,EAAE,aAAyC,OAAO;IACrG,MAAM,IAAI,GAAiB;QACzB,MAAM,EAAE,OAAO,CAAC,CAAC,IAAI,EAAE;QACvB,IAAI,EAAE,CAAC,CAAC,IAAI;QACZ,QAAQ,EAAE,CAAC,CAAC,QAAQ;QACpB,IAAI,EAAE,CAAC,CAAC,IAAI;QACZ,UAAU,EAAE,CAAC,CAAC,UAAU;QACxB,UAAU;QACV,eAAe,EAAE,eAAe,CAAC,CAAC,CAAC,UAAU,CAAC;KAC/C,CAAC;IACF,IAAI,eAAe,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC;QAAE,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;IAC5D,OAAO,IAAI,CAAC;AACd,CAAC;AAED,SAAS,UAAU,CAAC,IAAY;IAC9B,OAAO,4BAA4B,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,8BAA8B,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC9F,CAAC;AAED,SAAS,IAAI,CAAC,OAAuB;IACnC,MAAM,KAAK,GAAG,IAAI,GAAG,EAAwB,CAAC;IAC9C,KAAK,MAAM,CAAC,IAAI,OAAO,EAAE,CAAC;QACxB,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,QAAQ,EAAE,CAAC;QACvC,MAAM,QAAQ,GAAG,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QAChC,IAAI,CAAC,QAAQ,IAAI,CAAC,CAAC,IAAI,GAAG,QAAQ,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,IAAI,IAAI,CAAC,CAAC,UAAU,GAAG,QAAQ,CAAC,UAAU,CAAC,EAAE,CAAC;YAC5G,KAAK,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC;QACpB,CAAC;IACH,CAAC;IACD,OAAO,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,IAAI,CAAC,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;AACpK,CAAC;AAED,SAAS,aAAa,CAAC,EAAqB,EAAE,OAAe,EAAE,MAAc,EAAE,IAAa;IAC1F,MAAM,UAAU,GAAG,IAAI,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,EAAE,CAAC;IAC/C,MAAM,MAAM,GAAc,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IAC7E,MAAM,KAAK,GAAG,EAAE,CAAC,OAAO,CACtB;mDAC+C,UAAU;gDACb,CAC7C,CAAC,GAAG,CAAC,GAAG,MAAM,CAAgB,CAAC;IAChC,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC;QAAE,OAAO,KAAK,CAAC;IACnC,MAAM,UAAU,GAAc,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,IAAI,MAAM,GAAG,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,IAAI,MAAM,GAAG,CAAC,CAAC;IAC/F,OAAO,EAAE,CAAC,OAAO,CACf;sDACkD,UAAU;gDAChB,CAC7C,CAAC,GAAG,CAAC,GAAG,UAAU,CAAgB,CAAC;AACtC,CAAC;AAED,SAAS,aAAa,CAAC,GAAc,EAAE,KAAc;IACnD,MAAM,CAAC,GAAoB;QACzB,EAAE,EAAE,GAAG,CAAC,EAAE;QACV,QAAQ,EAAE,GAAG,CAAC,EAAE;QAChB,IAAI,EAAE,GAAG,CAAC,IAAI;QACd,MAAM,EAAE,GAAG,CAAC,IAAI;QAChB,IAAI,EAAE,GAAG,CAAC,IAAI;QACd,SAAS,EAAE,GAAG,CAAC,SAAS;QACxB,KAAK,EAAE,GAAG,GAAG,CAAC,UAAU,IAAI,GAAG,CAAC,QAAQ,EAAE;KAC3C,CAAC;IACF,IAAI,KAAK;QAAE,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC;IAC1B,OAAO,CAAC,CAAC;AACX,CAAC;AAED,SAAS,UAAU,CAAC,GAA0B,EAAE,IAAY,EAAE,KAAc;IAC1E,IAAI,CAAC,GAAG,EAAE,CAAC;QACT,MAAM,MAAM,GAAiB,EAAE,IAAI,EAAE,CAAC;QACtC,IAAI,KAAK;YAAE,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC;QAC/B,OAAO,MAAM,CAAC;IAChB,CAAC;IACD,MAAM,MAAM,GAAiB;QAC3B,IAAI,EAAE,GAAG,CAAC,IAAI;QACd,QAAQ,EAAE,GAAG,CAAC,EAAE;QAChB,MAAM,EAAE,GAAG,CAAC,IAAI;QAChB,IAAI,EAAE,GAAG,CAAC,IAAI;QACd,SAAS,EAAE,GAAG,CAAC,SAAS;QACxB,KAAK,EAAE,GAAG,GAAG,CAAC,UAAU,IAAI,GAAG,CAAC,QAAQ,EAAE;KAC3C,CAAC;IACF,IAAI,KAAK;QAAE,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC;IAC/B,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,SAAS,CACvB,EAAqB,EACrB,IAAgF;IAEhF,MAAM,OAAO,GAAG,gBAAgB,EAAE,CAAC;IACnC,IAAI,CAAC,OAAO,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,OAAO,CAAC;QAAE,MAAM,IAAI,KAAK,CAAC,yCAAyC,CAAC,CAAC;IACnG,IAAI,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI;QAAE,MAAM,IAAI,KAAK,CAAC,mCAAmC,CAAC,CAAC;IAErF,MAAM,KAAK,GAAG,UAAU,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IACrC,MAAM,YAAY,GAAG,IAAI,CAAC,YAAY,IAAI,IAAI,CAAC;IAC/C,MAAM,YAAY,GAAG,eAAe,CAAC,OAAO,CAAC,CAAC;IAC9C,IAAI,UAAU,GAAG,IAAI,CAAC,IAAI,EAAE,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;IAClD,IAAI,YAAmC,CAAC;IAExC,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;QAChB,MAAM,OAAO,GAAG,aAAa,CAAC,EAAE,EAAE,OAAO,EAAE,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;QACpE,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,UAAU,EAAE,CAAC;YACtC,MAAM,UAAU,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,aAAa,CAAC,CAAC,EAAE,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAClF,MAAM,GAAG,GAAiB;gBACxB,OAAO;gBACP,UAAU;gBACV,OAAO,EAAE,EAAE;gBACX,OAAO,EAAE,EAAE;gBACX,aAAa,EAAE,EAAE;gBACjB,aAAa,EAAE,EAAE;gBACjB,KAAK;gBACL,cAAc,EAAE,qGAAqG;gBACrH,SAAS,EAAE,YAAY,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO;aACvD,CAAC;YACF,IAAI,YAAY,CAAC,IAAI,GAAG,CAAC;gBAAE,GAAG,CAAC,YAAY,GAAG,YAAY,CAAC,IAAI,CAAC;YAChE,OAAO,GAAG,CAAC;QACb,CAAC;QACD,YAAY,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;QAC1B,IAAI,CAAC,YAAY,EAAE,CAAC;YAClB,MAAM,GAAG,GAAiB;gBACxB,OAAO;gBACP,UAAU,EAAE,EAAE;gBACd,OAAO,EAAE,EAAE;gBACX,OAAO,EAAE,EAAE;gBACX,aAAa,EAAE,EAAE;gBACjB,aAAa,EAAE,EAAE;gBACjB,KAAK;gBACL,cAAc,EAAE,wEAAwE;gBACxF,SAAS,E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package/build/src/tools/registry.js CHANGED Viewed

@@ -77,7 +77,7 @@ export const TOOLS = [
     },
     {
         name: "cl_explore",
-        description: "One-call code exploration over the current branch index: hybrid search grouped by file, compact source previews, signature-collapse, and a relationship/blast map. Use for broad questions like 'how does X work?' before falling back to separate search/expand/related calls.\n\nRETURNS: {indexId, query, count, files:[{path, stale?, results:[{handle,lines,score,why,preview,signature?,collapsed?,stale?}]}], related:[{sourcePath,path,edgeType,hops,confidence,stale?}], freshness, pendingFiles?, nextCursor?}\n\nEXAMPLE: cl_explore(query: \"session validation flow\", limit: 8)",
+        description: "One-call code exploration over the current branch index: hybrid search grouped by file, compact source previews, signature-collapse, and a relationship/blast map. Use for broad questions like 'how does X work?' before falling back to separate search/expand/related calls.\n\nRETURNS: {indexId, query, count, files:[{path, stale?, results:[{handle,lines,score,why,preview,signature?,collapsed?,stale?}]}], related:[{sourcePath,path,edgeType,hops,confidence,stale?}], freshness, pendingFiles?, nextCursor?, truncated?}\n\nEXAMPLE: cl_explore(query: \"session validation flow\", limit: 8)",
         schema: {
             query: z.string().describe("Exploration query (2-6 specific technical terms recommended)."),
             limit: z.coerce.number().optional().default(8).describe("Maximum ranked chunks to group into files (default 8)."),
@@ -85,6 +85,9 @@ export const TOOLS = [
             contentType: z.enum(["code", "prose"]).optional().describe("Filter by chunk type: 'code' or 'prose'."),
             snippet: z.enum(["none", "headline", "compact", "full"]).optional().describe("Preview verbosity. Default compact."),
             relatedDepth: z.coerce.number().optional().default(1).describe("Relationship map depth (default 1, capped at 3)."),
+            maxFiles: z.coerce.number().optional().default(6).describe("Maximum file groups to return (default 6)."),
+            maxResultsPerFile: z.coerce.number().optional().default(3).describe("Maximum result previews per file group (default 3)."),
+            maxRelated: z.coerce.number().optional().default(20).describe("Maximum relationship-map entries (default 20)."),
         },
         handler: (ctx, args) => {
             ensureActive(ctx);
@@ -94,6 +97,9 @@ export const TOOLS = [
                 contentType: args.contentType,
                 snippet: args.snippet,
                 relatedDepth: args.relatedDepth,
+                maxFiles: args.maxFiles,
+                maxResultsPerFile: args.maxResultsPerFile,
+                maxRelated: args.maxRelated,
             });
         },
     },

package/build/src/tools/registry.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/docs/how-it-works.md ADDED Viewed

@@ -0,0 +1,154 @@
+# How CodeLens works
+CodeLens is a **branch-aware local code knowledge retrieval engine**. It indexes
+the current repo/branch into SQLite and lets coding agents ask "what code is
+relevant to X?" via compact ranked handles — instead of grep/find/read flooding
+their context window. No chat LLM is used anywhere in the core path.
+## Architecture
+```
+Agent (Pi / Claude Code / Cursor / Gemini / opencode / Codex)
+   │  MCP stdio
+   ▼
+CodeLens MCP server  ──▶  CLI (codelens <subcommand>)
+   │
+   ├── Git scope detector        (repo / worktree / branch / HEAD / dirty)
+   ├── Index manager             (per-branch index identity)
+   ├── File scanner              (.gitignore-aware, binary/size filters)
+   ├── FTS5 indexer              (structure-aware chunks + content hash)
+   ├── Tree-sitter symbol extractor (11 grammars, text fallback)
+   ├── Source graph builder      (imports / defines / tests / belongs_to)
+   ├── Graph query (recursive CTE + bounded BFS)
+   ├── Freshness checker          (mtime/size fast → hash on suspicion)
+   ├── TTL pruner                (never-delete guards)
+   ├── Saved-context store       (separate DB, survives rebuilds)
+   └── Usage tracker             (global, actual-file-size savings)
+   │
+   ▼
+SQLite
+   ├── per-branch index DB  (~/.codelens/indexes/index-<repoId>.db)
+   ├── saved-contexts DB   (~/.codelens/contexts/contexts-<repoId>.db)
+   └── global usage DB     (~/.codelens/usage.db)
+```
+## The index layers
+1. **Files**: path, language, size, mtime, content hash.
+2. **FTS5 lexical**: structure-aware code chunks with line-based fallback and
+   Porter-stemming/BM25 ranking. Code files with extractable symbols are chunked
+   around outermost functions/classes/methods/types; oversized symbols and non-structural
+   gaps (imports, top-level statements, inter-symbol regions) are line-chunked.
+   Leading comment/decorator blocks are attached to the following symbol chunk.
+   Line fallback uses small overlap to reduce boundary loss. Chunks carry
+   `code` vs `prose`, `chunker`, `chunker_version`, and `symbol_id` when aligned
+   to a symbol. The match-only FTS text preserves the original chunk and appends
+   bounded, deduplicated identifier subtokens (for example `validateSession` →
+   `validate session`) so code-identifier queries can match without changing
+   snippets or `cl_expand` content.
+3. **Symbols** (tree-sitter): functions/classes/methods/types/exports/imports
+   with line ranges + signatures + exported flag. Parser-eligible files are
+   parsed once and the same tree-sitter tree is reused for symbols and edges;
+   structure-aware chunking consumes those extracted symbol ranges. 11 grammars
+   shipped; unknown languages fall back to text-only FTS.
+4. **Source graph**: edges `imports`, `defines`, `belongs_to`, `exports`,
+   `tests` (filename heuristics). Resolution handles TS ESM `.js`→`.ts`
+   substitution. Unresolved imports emit no edge (no wrong edges).
+5. *(No vector/semantic layer — removed; ranking is FTS + symbol + graph.)*
+## Branch isolation (the core idea)
+Every index is scoped to `repoRoot + worktreePath + branch + HEAD`:
+```
+index_id = sha256(repoRoot | worktreePath | branch | headSha)
+```
+Every table row carries `index_id`; every query filters by it. So `git checkout`
+activates/creates a different index automatically — results from `main` never
+leak into `feature-b`. `cl_current` reports which index is active.
+## Freshness (local files are source of truth)
+Before query tools answer (`cl_search`, `cl_explore`, `cl_related`, `cl_impact`, `cl_map`), `ensureFreshIndex` runs:
+1. Detect current git scope → activate/create the branch index.
+2. Scan files, diff `mtime`+`size` vs indexed rows (fast); hash only
+   changed/suspicious files.
+3. Reindex changed/new files in per-file transactions; drop deleted. Files with
+   chunks from an older/unknown `chunker_version` are also treated as changed, so
+   chunker improvements roll forward on the next refresh.
+4. Budget-bounded (default 500ms); if incomplete, surface
+   `freshness:"partial"` + `pendingFiles`. A chunker-version bump can require a
+   full budget-bounded re-chunk over several refresh cycles.
+`cl_expand` **always reads current disk** (never stale stored text). A file
+watcher (server mode) short-circuits the scan when nothing changed, with a 5s
+periodic full-scan backstop.
+**Edit behavior:** when the agent edits a file, the *next query tool call*
+auto-refreshes and reindexes it (lazy, not eager at edit time). If the refresh
+budget is exhausted, known-stale paths are surfaced with `stale:true` and
+`freshness:"partial"` so the agent can read those files directly.
+## Ranking (hybrid)
+`cl_search` fuses lexical, structural, graph, path, and code/prose signals with
+weights from `src/search/rank.ts`:
+```
+score = fts×0.34 + symbol×0.18 + graph×0.22 + code×0.08 + path×0.08 + exact×0.10
+```
+- `fts`: BM25 normalized. Queries are expanded with the same bounded identifier
+  splitter used at index time, then quoted through the FTS path; expansion is
+  capped to avoid broadening queries or hurting latency.
+- `symbol`: full signal when the chunk's `symbol_id` name partially matches a
+  query term; lower-strength file-level symbol match is kept as fallback.
+- `exact`: full signal when the chunk's `symbol_id` name exactly matches a query
+  term; lower-strength file-level exact match is kept as fallback.
+- `graph`: 1 if the file is graph-proximate to top lexical results.
+- `path`: query term appears in the file path/name.
+- `code`: modest boost for `code` chunks over `prose` (docs), so code discovery
+  isn't drowned out by markdown. Pass `contentType:"code"` to filter to source
+  only.
+`cl_related` runs a recursive-CTE BFS over the `edges` table (direction-aware,
+cycle-guarded, depth-capped at 3).
+## Concurrency & recovery
+- **WAL mode** + a single-writer queue + a cross-process advisory lease
+  (`index_locks`) so two agent processes on the same repo never corrupt rows;
+  readers see the prior committed snapshot.
+- **Corruption recovery:** `PRAGMA quick_check` on startup + on query error →
+  rebuild the core index. Saved contexts live in a **separate DB** and survive.
+- **Schema versioning:** version guard refuses a newer-than-code DB; migrations
+  are transactional with a pre-migration backup.
+## TTL
+Inactive indexes are pruned automatically (startup + periodic): inactive branch
+14d, detached 3d, worktree 48h. **Never** deletes the active index, pinned
+indexes, locked indexes, or recently-accessed ones. `cl_prune` (manual),
+`cl_drop` (explicit, refuses active/pinned).
+## Saved contexts
+`cl_save`/`cl_load` persist named handle sets + notes in a **separate**
+contexts DB (`~/.codelens/contexts/`), keyed by repo. They survive core-index
+rebuilds. Items reference path+symbol (stable across reindex), not chunk ids.
+Pin to prevent TTL deletion.
+## Usage tracking
+Global (`~/.codelens/usage.db`): per-tool calls, bytes served, and an estimated
+context saving computed from **actual indexed file sizes** of the result files.
+Discovery tools (`cl_search`, `cl_explore`, `cl_related`, `cl_impact`) accrue savings. See
+[`docs/usage-metrics.md`](usage-metrics.md).
+## Distribution
+Currently builds from source (Node ≥ 22.5) via `install.sh`/`install.ps1`,
+which also wires agent configs + slash commands. A self-contained bundle
+(vendored Node) like some other tools is future work once published. The `cl_*`
+MCP tools are the same surface across every host.

package/docs/tools.md CHANGED Viewed

@@ -24,8 +24,8 @@ JSON-serialized text content.
 - **Line-range format**: `cl_search` reports `lines` as a `"start-end"` string for compact display; `cl_map` and `cl_expand` use numeric `startLine`/`endLine` for programmatic use. This difference is intentional.
 ## cl_explore
-- **Input**: `{ query: string, limit?: number=8, cursor?: string, contentType?: "code"|"prose", snippet?: "none"|"headline"|"compact"|"full", relatedDepth?: number=1 }`
-- **Returns**: `{ indexId, query, count, files:[{path, stale?, results:[{handle,lines,score,why,preview,signature?,collapsed?,stale?}]}], related:[{sourcePath,path,edgeType,hops,confidence,stale?}], freshness, pendingFiles?, nextCursor? }`
+- **Input**: `{ query: string, limit?: number=8, cursor?: string, contentType?: "code"|"prose", snippet?: "none"|"headline"|"compact"|"full", relatedDepth?: number=1, maxFiles?: number=6, maxResultsPerFile?: number=3, maxRelated?: number=20 }`
+- **Returns**: `{ indexId, query, count, files:[{path, stale?, results:[{handle,lines,score,why,preview,signature?,collapsed?,stale?}]}], related:[{sourcePath,path,edgeType,hops,confidence,stale?}], freshness, pendingFiles?, nextCursor?, truncated? }`
 - **Use**: broad orientation in one call — "how does X work?", "show the flow around Y", or surveying an unfamiliar area. It fuses `cl_search` + grouped previews + graph relationships; use `cl_search` when you only need to locate handles.
 ## cl_related
@@ -35,8 +35,8 @@ JSON-serialized text content.
 ## cl_impact
 - **Input**: `{ symbol?: string, path?: string, depth?: number=2, includeTests?: boolean=true }`
-- **Returns**: `{ indexId, target?, candidates?, callers, callees, affectedFiles, affectedTests, depth, confidenceNote, freshness?, pendingFiles? }`
-- **Use**: before changing shared code. Pass `symbol` plus `path` when possible; if a symbol is ambiguous, CodeLens returns `candidates` instead of guessing. Impact is edge-derived and includes confidence/hop counts; use `cl_expand` to inspect exact current code before editing.
+- **Returns**: `{ indexId, target?, candidates?, callers, callees, affectedFiles, affectedTests, depth, summary?, confidenceNote, freshness?, pendingFiles? }`
+- **Use**: before changing shared code. Pass `symbol` plus `path` when possible; if a symbol is ambiguous, CodeLens returns `candidates` instead of guessing. Impact is edge-derived and includes confidence/hop counts plus provenance labels (`graph` or conservative `path-heuristic`); use `cl_expand` to inspect exact current code before editing.
 ## cl_map
 - **Input**: `{ path?: string, limit?: number=50, all?: boolean }`

package/docs/usage-metrics.md ADDED Viewed

@@ -0,0 +1,89 @@
+# Usage metrics — how "saved" is calculated
+`cl_usage` reports per-tool call counts, bytes served, and an **estimated**
+context-window saving. The saving is an *estimate*, not a measurement — this
+page explains exactly how it's computed and its limits.
+## Which tools are tracked
+Only the agent's **retrieval + context-management** tools are tracked as
+"usage" — the ones that represent the agent actually using CodeLens to
+find/read/save code:
+| Tool | tracked | calls | bytes_served | bytes_saved |
+|------|---------|-------|--------------|-------------|
+| `cl_search` | ✅ | ✅ | ✅ | ✅ (discovery) |
+| `cl_explore` | ✅ | ✅ | ✅ | ✅ (discovery) |
+| `cl_related` | ✅ | ✅ | ✅ | ✅ (discovery) |
+| `cl_impact` | ✅ | ✅ | ✅ | ✅ (discovery) |
+| `cl_expand` | ✅ | ✅ | ✅ | 0 (it *is* the scoped read step) |
+| `cl_save` / `cl_load` | ✅ | ✅ | ✅ | 0 (context management) |
+**Operational tools are NOT tracked** (they're maintenance, not usage):
+`cl_refresh`, `cl_doctor`, `cl_stats`, `cl_prune`, `cl_drop`, `cl_current`,
+`cl_usage`. So `cl_refresh` (building the index) does not appear in the usage
+report, and checking `cl_usage` never inflates the numbers.
+Only the **discovery** tools (`cl_search`, `cl_explore`, `cl_related`, `cl_impact`) accrue `bytes_saved` —
+the ones that replace "grep + read a bunch of files" with compact indexed context.
+## The formula (refined — actual file sizes)
+For a discovery call, CodeLens computes savings from the **real sizes of the
+files in the results**, which it already indexes (`files.size`):
+```
+saved = max(0, Σ(distinct result files' indexed sizes) − bytesServed)
+```
+- `distinct result files` = the unique paths among the returned handles/files
+  (`cl_search`/`cl_related` carry `results[].path`; `cl_explore` carries
+  `files[].path`; `cl_impact` carries paths in target/candidates/callers/callees/affected lists).
+- `indexed sizes` = `files.size` for those paths in the current branch index.
+- `bytesServed` = bytes of the JSON actually sent to the model.
+- **Capped at 50 distinct files** so a `cl_related` result returning 100
+  importers doesn't inflate the total (the agent wouldn't read all 100
+  without the tool).
+**Counterfactual being modeled:** without the index, the agent would `grep` +
+`read` the relevant files (whole-file reads at their real sizes); with the tool
+it got compact handles. The difference is the saved context.
+### Fallback (flat proxy)
+If the size lookup fails (e.g. index not ready, paths not yet indexed), CodeLens
+falls back to a flat proxy:
+```
+saved = max(0, handles × 4096 − bytesServed)
+```
+where `4096` is a rough average file size and `handles` = number of result
+entries. This is the older, less-accurate estimate, kept only as a graceful
+fallback.
+## Honest limits
+1. **It's a counterfactual estimate, not a measurement.** We don't know exactly
+   which files the agent *would have* read without the tool — we assume the
+   result files, whole.
+2. **Whole-file assumption.** We credit the full file size, but a raw `read`
+   might be partial, or the agent might read only the relevant part — so the
+   estimate can overstate for large files with small relevant regions.
+3. **No grep-output cost.** It ignores the bytes `grep` itself would have dumped
+   into context, which would make the real saving *larger*.
+4. **No multi-round exploration.** It counts one call, not the exploration
+   rounds the agent avoids.
+5. The 50-file cap is a judgment call to curb broad relationship/impact results.
+Net: treat `saved(est)` as an order-of-magnitude indicator of how much context
+the index tools are sparing, not an audited figure.
+## Storage
+Usage is **global** (`~/.codelens/usage.db`), aggregated across all repos, with
+a `(tool, repo_id)` key so `cl_usage` can break it down per repo. It survives
+restarts and core-index rebuilds (it's separate from the per-branch index DBs).
+Reset with `cl_usage` is not exposed as a tool; from code, `UsageTracker.reset()`
+clears it.

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@fodx/codelens",
-  "version": "2.0.1",
+  "version": "2.1.0",
   "description": "Local, branch-aware code search & relation graph. SQLite FTS5 + tree-sitter symbols + source-graph edges, exposed as an MCP server and CLI. No chat LLM required.",
   "license": "MIT",
   "type": "module",
@@ -39,8 +39,10 @@
     "adapters/pi",
     "README.md",
     "docs/agent-guide.md",
+    "docs/how-it-works.md",
     "docs/routing.md",
     "docs/tools.md",
+    "docs/usage-metrics.md",
     "docs/codelens-preview.png"
   ],
   "pi": {
@@ -58,7 +60,8 @@
     "mcp:smoke": "node build/src/server.js --smoke",
     "start": "node build/src/server.js",
     "benchmark": "npx tsx bench/run.ts",
-    "quality": "npx tsx bench/quality.ts"
+    "quality": "npx tsx bench/quality.ts",
+    "eval:agent": "npx tsx bench/agent-eval.ts"
   },
   "dependencies": {
     "@modelcontextprotocol/sdk": "^1.26.0",