@fodx/codelens 2.0.0 → 2.1.0

package/README.md

@@ -17,16 +17,16 @@ Cursor, Gemini CLI, opencode, Codex CLI) or directly from the terminal.
   leak across branches.
 - **Relations, not just text** — graph edges (imports / tests / callers / …)
   ranked alongside FTS5 + symbol-name matches.
-- **Fresh** — auto-refreshes changed files before query; `cl_expand` always
-  reads from disk.
+- **Fresh** — query tools auto-refresh changed files before answering, flag
+  budget-limited stale results, and `cl_expand` always reads from disk.
 - **Compact** — returns ranked handles; expand only what you need.
 - **Durable** — saved contexts live in a separate DB and survive index rebuilds.
 - **Self-cleaning** — automatic TTL prunes inactive indexes.
 
-## Install (one command)
+## Install
 
-The installer builds the tool, puts `codelens` on your PATH, and wires the
-MCP server into your agents/IDEs automatically (Claude Code, Cursor, Gemini CLI,
+One command builds the tool, installs the `codelens` launcher, and wires the MCP
+server into detected agents/IDEs automatically (Claude Code, Cursor, Gemini CLI,
 opencode, Codex CLI). Requires Node.js ≥ 22.5.
 
 **macOS / Linux:**
@@ -39,9 +39,9 @@ curl -fsSL https://raw.githubusercontent.com/ex-git/codeLens/main/install.sh | s
 irm https://raw.githubusercontent.com/ex-git/codeLens/main/install.ps1 | iex
 ```
 
-Then open a new terminal (so PATH picks up) and the agents you use are configured.
-The installer wires the MCP server into every detected agent; to choose
-explicitly or re-run later:
+After it finishes, open a new terminal so your shell picks up the newly installed
+`codelens` command. The agents detected during install are already configured;
+to choose targets explicitly or re-run later:
 
 ```bash
 codelens install --target all --yes        # wire all agents
@@ -149,10 +149,12 @@ node build/src/server.js
 
 1. In your repo, the agent calls `cl_current` (builds index if missing) or
    `cl_refresh` explicitly.
-2. `cl_search(query: "session validation")` → ranked handles (signature-first previews; pass `snippet:"full"` for more).
-3. `cl_related(path: "src/auth/session.ts", types: ["tests"])` → tests/callers.
-4. `cl_map(path: "src/auth")` → per-file symbol outline for orientation.
-5. `cl_expand(path: "src/auth/session.ts", startLine: 12, endLine: 58)` → exact code.
+2. `cl_explore(query: "session validation flow")` → grouped previews + relationship map in one call.
+3. `cl_search(query: "session validation")` → lean ranked handles when you only need locations.
+4. `cl_impact(symbol: "validateSession", path: "src/auth/session.ts")` → callers/callees/affected tests before edits.
+5. `cl_related(path: "src/auth/session.ts", types: ["tests"])` → targeted graph expansion.
+6. `cl_map(path: "src/auth")` → per-file symbol outline for orientation.
+7. `cl_expand(path: "src/auth/session.ts", startLine: 12, endLine: 58)` → exact code.
 
 See [`docs/agent-guide.md`](docs/agent-guide.md) for a full walkthrough,
 [`docs/tools.md`](docs/tools.md) for the tool reference, and
@@ -186,25 +188,29 @@ npm test            # vitest run
 npm run build       # tsc + copy schema assets
 npm run benchmark   # performance gate (search <50ms, cold <3s)
 npm run quality     # retrieval-quality fixture (recall@5/MRR/top-1/latency)
+npm run eval:agent  # deterministic with/without-CodeLens discovery proxy
 ```
 
 ## Docs
 
 - [How CodeLens works](docs/how-it-works.md) — architecture, index layers, branch isolation, freshness, ranking, TTL, saved contexts, usage.
 - [Usage metrics & how "saved" is calculated](docs/usage-metrics.md) — the formula, assumptions, and limits.
-- [CodeLens vs CodeGraph](docs/vs-codegraph.md) — feature comparison.
 
 ## Limitations
 
-- **No semantic/vector search** — the ONNX subsystem was removed; ranking is
-  FTS5 + symbol-name + graph proximity. (A real tokenizer can be re-added later.)
+- **No vector/semantic search** — there is no embedding model; ranking fuses
+  FTS5 BM25 + symbol-name + graph proximity + path + code/prose + exact-match
+  signals. Code identifiers are matched via bounded subtoken expansion
+  (e.g. `session` finds `validateSession`); a true semantic/vector layer is
+  still out of scope.
 - **Lazy on-demand indexing for very large repos** is future work — `cl_refresh`
   is eager. The recommended pattern for large repos is one `cl_refresh` then
-  incremental + the file watcher thereafter (cold index ~1.6s for 2000 files).
+  incremental + the file watcher thereafter (cold index ~3.5s for 2000 files).
 - **Routing hooks are advisory** (soft nudges, not hard blocks) per the no-
   throttling design decision — raw reads remain allowed for editing/verification.
-- **npm package** — published automatically from `v*` git tags via the
-  `publish` workflow; `npx -y @fodx/codelens` works once a tag is pushed. See
+- **npm package** — published on npm as `@fodx/codelens`; releases are
+  published automatically from `v*` git tags via the `publish` workflow. Use
+  `npx -y @fodx/codelens` for manual MCP configuration. See
   `.github/workflows/publish.yml`.
 - **Windows not tested** — path normalization handles backslashes, but `fs.watch`
   recursive behavior and native builds are unverified on Windows.

package/adapters/pi/codelens.extension.ts

@@ -151,13 +151,15 @@ const ROUTING = `
 A local branch-scoped code index is available via these tools:
 - cl_current  — repo/branch/index status (call if unsure whether the index is ready)
 - cl_search   — ranked semantic+lexical search → compact handles (path + line range + score)
+- cl_explore  — one-call grouped search + previews + relationship map for broad orientation
 - cl_related  — graph neighbors of a file/symbol (imports/importers/tests/callers)
+- cl_impact   — callers/callees/affected files/tests before edits
 - cl_map      — per-file symbol outline (repo map) for quick orientation
 - cl_expand   — exact current file content by path/range (reads disk, never stale)
 
 Prefer cl_* for discovery when:
 - you don't know the exact name/string (semantic or conceptual search)
-- you need relationships (importers, tests, callers) or a quick outline
+- you need broad orientation, relationships (importers, tests, callers), blast radius, or a quick outline
 - the repo is large or unfamiliar, or you'd otherwise grep + read many files
 - branch-scoped correctness matters (results won't leak across branches)
 
@@ -166,6 +168,7 @@ Raw grep/find/read is fine (or better) when:
 - you're reading or editing a single known file
 - the repo is tiny or familiar
 
+If a result has stale:true or freshness:"partial", read that file directly before relying on indexed snippets/edges.
 Always use cl_expand or a raw read for the exact file you're about to edit.
 After \`git checkout\`, results auto-scope to the new branch; call cl_current to
 confirm. You do NOT need the user's permission to use these tools.`;

package/adapters/pi/extension.json

@@ -6,5 +6,5 @@
     "command": "npx",
     "args": ["-y", "@fodx/codelens"]
   },
-  "description": "Branch-aware code search & relation graph (MCP server + CLI). Routes agents to cl_search/cl_related/cl_expand instead of raw grep/read."
+  "description": "Branch-aware code search & relation graph (MCP server + CLI). Routes agents to cl_explore/cl_search/cl_related/cl_impact/cl_expand instead of raw grep/read."
 }

package/build/src/index/indexer.js

@@ -1,6 +1,7 @@
 import { getOrCreateIndex, getActiveIndexId } from "./manager.js";
 import { scanFiles } from "./scanner.js";
 import { indexFile, deleteFileFromIndex } from "./fts.js";
+import { setPendingPaths } from "./staleness.js";
 export function buildIndex(db, scope) {
     const row = getOrCreateIndex(db, scope);
     const indexId = row.id;
@@ -26,6 +27,7 @@ export function buildIndex(db, scope) {
             skipped++;
         }
     }
+    setPendingPaths(indexId, []);
     return { indexId, indexedFiles, totalChunks, skipped };
 }
 /** Convenience: ensure active index id is set after build. */

package/build/src/index/indexer.js.map

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package/build/src/index/reindex.js

@@ -3,6 +3,7 @@ import { diffFiles } from "./freshness.js";
 import { indexFile, deleteFileFromIndex } from "./fts.js";
 import { getOrCreateIndex } from "./manager.js";
 import { acquireWriteLease, releaseWriteLease, newOwnerId } from "./queue.js";
+import { getPendingPaths, setPendingPaths } from "./staleness.js";
 const DEFAULT_BUDGET_MS = 500;
 const FULL_SCAN_INTERVAL_MS = 5000;
 let lastFullScanAt = 0;
@@ -19,7 +20,7 @@ export function ensureFreshIndex(db, scope, opts) {
     // since the last full scan, and we scanned recently, skip the re-scan
     // entirely (the quiet-period optimization). A periodic full scan
     // (FULL_SCAN_INTERVAL_MS) catches anything the watcher missed.
-    if (watcher?.active && watcher.dirty.size === 0 && (Date.now() - lastFullScanAt) < FULL_SCAN_INTERVAL_MS) {
+    if (watcher?.active && watcher.dirty.size === 0 && getPendingPaths(indexId).size === 0 && (Date.now() - lastFullScanAt) < FULL_SCAN_INTERVAL_MS) {
         return { refreshed: 0, deleted: 0, pending: 0, durationMs: 0 };
     }
     // Cross-process write lease: skip if another process is mid-reindex.
@@ -43,9 +44,11 @@ export function ensureFreshIndex(db, scope, opts) {
         const toProcess = [...diff.changed, ...diff.newFiles];
         let refreshed = 0;
         let pending = 0;
+        let pendingPaths = [];
         for (const f of toProcess) {
             if (Date.now() - start > budget) {
-                pending = toProcess.length - refreshed;
+                pendingPaths = toProcess.slice(refreshed).map((p) => p.path);
+                pending = pendingPaths.length;
                 break;
             }
             try {
@@ -56,6 +59,7 @@ export function ensureFreshIndex(db, scope, opts) {
                 // skip unreadable
             }
         }
+        setPendingPaths(indexId, pendingPaths);
         let deleted = 0;
         for (const d of diff.deleted) {
             deleteFileFromIndex(db, indexId, d.path);

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+{"version":3,"file":"reindex.js","sourceRoot":"","sources":["../../../src/index/reindex.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,SAAS,EAAE,MAAM,cAAc,CAAC;AACzC,OAAO,EAAE,SAAS,EAAsB,MAAM,gBAAgB,CAAC;AAC/D,OAAO,EAAE,SAAS,EAAE,mBAAmB,EAAE,MAAM,UAAU,CAAC;AAC1D,OAAO,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;AAChD,OAAO,EAAE,iBAAiB,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,YAAY,CAAC;AAE9E,OAAO,EAAE,eAAe,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAsBlE,MAAM,iBAAiB,GAAG,GAAG,CAAC;AAC9B,MAAM,qBAAqB,GAAG,IAAI,CAAC;AACnC,IAAI,cAAc,GAAG,CAAC,CAAC;AACvB,IAAI,aAAa,GAAuB,IAAI,CAAC;AAE7C,oEAAoE;AACpE,MAAM,UAAU,eAAe,CAAC,CAAqB,IAAU,aAAa,GAAG,CAAC,CAAC,CAAC,CAAC;AAEnF,MAAM,UAAU,gBAAgB,CAC9B,EAAqB,EACrB,KAAe,EACf,IAAmD;IAEnD,MAAM,GAAG,GAAG,gBAAgB,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC;IACxC,MAAM,OAAO,GAAG,GAAG,CAAC,EAAE,CAAC;IACvB,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IACzB,MAAM,MAAM,GAAG,IAAI,EAAE,QAAQ,IAAI,iBAAiB,CAAC;IACnD,MAAM,OAAO,GAAG,IAAI,EAAE,OAAO,IAAI,aAAa,CAAC;IAE/C,4EAA4E;IAC5E,sEAAsE;IACtE,iEAAiE;IACjE,+DAA+D;IAC/D,IAAI,OAAO,EAAE,MAAM,IAAI,OAAO,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,IAAI,eAAe,CAAC,OAAO,CAAC,CAAC,IAAI,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,cAAc,CAAC,GAAG,qBAAqB,EAAE,CAAC;QAChJ,OAAO,EAAE,SAAS,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,UAAU,EAAE,CAAC,EAAE,CAAC;IACjE,CAAC;IAED,qEAAqE;IACrE,MAAM,KAAK,GAAG,UAAU,EAAE,CAAC;IAC3B,8EAA8E;IAC9E,mEAAmE;IACnE,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,MAAM,GAAG,CAAC,CAAC,CAAC;IAC5C,IAAI,CAAC,iBAAiB,CAAC,EAAE,EAAE,OAAO,EAAE,KAAK,EAAE,OAAO,CAAC,EAAE,CAAC;QACpD,OAAO,EAAE,SAAS,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,UAAU,EAAE,CAAC,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC;IAC/E,CAAC;IACD,IAAI,CAAC;QACH,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QAC5B,4EAA4E;QAC5E,6EAA6E;QAC7E,4EAA4E;QAC5E,yDAAyD;QACzD,IAAI,OAAO,EAAE,MAAM;YAAE,OAAO,CAAC,OAAO,EAAE,CAAC,CAAC,sBAAsB;QAC9D,MAAM,OAAO,GAAG,SAAS,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;QAC1C,MAAM,IAAI,GAAkB,SAAS,CAAC,EAAE,EAAE,OAAO,EAAE,OAAO,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC;QAE5E,MAAM,SAAS,GAAG,CAAC,GAAG,IAAI,CAAC,OAAO,EAAE,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAC;QACtD,IAAI,SAAS,GAAG,CAAC,CAAC;QAClB,IAAI,OAAO,GAAG,CAAC,CAAC;QAChB,IAAI,YAAY,GAAa,EAAE,CAAC;QAChC,KAAK,MAAM,CAAC,IAAI,SAAS,EAAE,CAAC;YAC1B,IAAI,IAAI,CAAC,GAAG,EAAE,GAAG,KAAK,GAAG,MAAM,EAAE,CAAC;gBAChC,YAAY,GAAG,SAAS,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;gBAC7D,OAAO,GAAG,YAAY,CAAC,MAAM,CAAC;gBAC9B,MAAM;YACR,CAAC;YACD,IAAI,CAAC;gBACH,SAAS,CAAC,EAAE,EAAE,OAAO,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC;gBAC1C,SAAS,EAAE,CAAC;YACd,CAAC;YAAC,MAAM,CAAC;gBACP,kBAAkB;YACpB,CAAC;QACH,CAAC;QACD,eAAe,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QAEvC,IAAI,OAAO,GAAG,CAAC,CAAC;QAChB,KAAK,MAAM,CAAC,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;YAC7B,mBAAmB,CAAC,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;YACzC,OAAO,EAAE,CAAC;QACZ,CAAC;QAED,OAAO,EAAE,SAAS,EAAE,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,KAAK,EAAE,CAAC;IACzE,CAAC;YAAS,CAAC;QACT,iBAAiB,CAAC,EAAE,EAAE,OAAO,EAAE,KAAK,CAAC,CAAC;IACxC,CAAC;AACH,CAAC"}

package/build/src/index/staleness.js

@@ -0,0 +1,16 @@
+const pendingByIndex = new Map();
+/** Remember files that were known stale but not refreshed within the budget. */
+export function setPendingPaths(indexId, paths) {
+    if (paths.length === 0) {
+        pendingByIndex.delete(indexId);
+        return;
+    }
+    pendingByIndex.set(indexId, new Set(paths));
+}
+export function getPendingPaths(indexId) {
+    return pendingByIndex.get(indexId) ?? new Set();
+}
+export function isPendingPath(indexId, path) {
+    return pendingByIndex.get(indexId)?.has(path) ?? false;
+}
+//# sourceMappingURL=staleness.js.map

package/build/src/index/staleness.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"staleness.js","sourceRoot":"","sources":["../../../src/index/staleness.ts"],"names":[],"mappings":"AAAA,MAAM,cAAc,GAAG,IAAI,GAAG,EAAuB,CAAC;AAEtD,gFAAgF;AAChF,MAAM,UAAU,eAAe,CAAC,OAAe,EAAE,KAAe;IAC9D,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACvB,cAAc,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QAC/B,OAAO;IACT,CAAC;IACD,cAAc,CAAC,GAAG,CAAC,OAAO,EAAE,IAAI,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC;AAC9C,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,OAAe;IAC7C,OAAO,cAAc,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,IAAI,GAAG,EAAU,CAAC;AAC1D,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,OAAe,EAAE,IAAY;IACzD,OAAO,cAAc,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,IAAI,KAAK,CAAC;AACzD,CAAC"}

package/build/src/installer/agents.js

@@ -8,13 +8,14 @@ const CODEX_START = `# codelens routing start (managed by \`codelens install\`)`
 const CODEX_END = `# codelens routing end`;
 const INSTRUCTIONS_BODY = `# CodeLens routing
 
-Prefer the codelens MCP tools (\`cl_search\`, \`cl_related\`, \`cl_expand\`,
-\`cl_map\`, \`cl_save\`, \`cl_load\`) for code discovery — they keep context lean
-and are branch-scoped.
+Prefer the codelens MCP tools (\`cl_search\`, \`cl_explore\`, \`cl_related\`,
+\`cl_impact\`, \`cl_expand\`, \`cl_map\`, \`cl_save\`, \`cl_load\`) for code
+discovery — they keep context lean and are branch-scoped.
 
 Use codelens when:
 - you don't know the exact name/string (semantic or conceptual search)
-- you need relationships (importers, tests, callers) or a file outline
+- you need broad orientation in one call (\`cl_explore\`)
+- you need relationships (importers, tests, callers), blast radius before edits (\`cl_impact\`), or a file outline
 - the repo is large or unfamiliar, or you'd otherwise grep + read many files
 
 Raw \`grep\`/\`find\`/\`read\` is fine when:
@@ -22,6 +23,7 @@ Raw \`grep\`/\`find\`/\`read\` is fine when:
 - you're reading or editing a single known file
 - the repo is tiny or familiar
 
+If a result has \`stale:true\` or \`freshness:"partial"\`, read that file directly before relying on indexed snippets/edges.
 Always use \`cl_expand\` or a raw read for the exact file you're about to edit.
 Results are scoped to the current branch; call \`cl_current\` after a
 \`git checkout\`. See \`docs/routing.md\`. Remove with: \`codelens uninstall\`.`;
@@ -178,6 +180,8 @@ class ClaudeCodeTarget {
             { name: "codelens-stats.md", content: "Call the `cl_stats` MCP tool and report the current index statistics (files/symbols/chunks/edges)." },
             { name: "codelens-doctor.md", content: "Call the `cl_doctor` MCP tool and report the health check results." },
             { name: "codelens-search.md", content: "Call the `cl_search` MCP tool with query: $ARGUMENTS (limit 5). Show the ranked handles." },
+            { name: "codelens-explore.md", content: "Call the `cl_explore` MCP tool with query: $ARGUMENTS (limit 8). Summarize grouped files and relationships." },
+            { name: "codelens-impact.md", content: "Call the `cl_impact` MCP tool for symbol/path: $ARGUMENTS. Summarize callers, callees, affected files, and affected tests." },
             { name: "codelens-refresh.md", content: "Call the `cl_refresh` MCP tool to build/update the current branch index, then report the result." },
         ];
     }

package/build/src/installer/agents.js.map

@@ -1 +1 @@
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package/build/src/obs/usage.js

@@ -11,17 +11,17 @@ import { join } from "node:path";
  * can show both totals and a per-repo breakdown.
  *
  * "bytes_saved" is a defensible estimate for DISCOVERY tools (cl_search,
- * cl_related): the agent would otherwise grep + read ~N files at ~avg file
+ * cl_explore, cl_related, cl_impact): the agent would otherwise grep + read ~N files at ~avg file
  * size; instead it got compact handles. saved ≈ max(0, N*AVG_FILE_BYTES -
  * bytesServed). Non-discovery tools record calls + bytes_served but claim no
  * savings.
  */
 const AVG_FILE_BYTES = 4096;
-export const DISCOVERY_TOOLS = new Set(["cl_search", "cl_related"]);
+export const DISCOVERY_TOOLS = new Set(["cl_search", "cl_explore", "cl_related", "cl_impact"]);
 /** Tools that count as "usage" (retrieval + context management). Operational
  *  tools (refresh/doctor/stats/prune/drop/current/usage) are NOT tracked — they
  *  are maintenance, not the agent using the retrieval system. */
-export const TRACKED_TOOLS = new Set(["cl_search", "cl_related", "cl_expand", "cl_save", "cl_load"]);
+export const TRACKED_TOOLS = new Set(["cl_search", "cl_explore", "cl_related", "cl_impact", "cl_expand", "cl_save", "cl_load"]);
 function usageDbPath() {
     const dir = join(homedir(), ".codelens");
     mkdirSync(dir, { recursive: true });
@@ -99,9 +99,15 @@ export class UsageTracker {
     reset() { this.db.prepare("DELETE FROM tool_usage").run(); }
 }
 function countHandles(tool, resultText) {
-    void tool;
     try {
         const obj = JSON.parse(resultText);
+        if (tool === "cl_explore")
+            return Array.isArray(obj.files) ? obj.files.length : 0;
+        if (tool === "cl_impact") {
+            return [obj.callers, obj.callees, obj.affectedFiles, obj.affectedTests, obj.candidates]
+                .filter(Array.isArray)
+                .reduce((n, arr) => n + arr.length, 0);
+        }
         return Array.isArray(obj.results) ? obj.results.length : 0;
     }
     catch {
@@ -126,7 +132,29 @@ export function estimateSavedFromPaths(db, indexId, paths, bytesServed, cap = 50
 export function extractDiscoveryPaths(resultText) {
     try {
         const obj = JSON.parse(resultText);
-        return (obj.results ?? []).map((r) => r.path).filter((p) => typeof p === "string");
+        const paths = [];
+        if (typeof obj.path === "string")
+            paths.push(obj.path);
+        if (typeof obj.target?.path === "string")
+            paths.push(obj.target.path);
+        for (const r of obj.results ?? [])
+            if (typeof r.path === "string")
+                paths.push(r.path);
+        for (const f of obj.files ?? [])
+            if (typeof f.path === "string")
+                paths.push(f.path);
+        for (const r of obj.related ?? []) {
+            if (typeof r.sourcePath === "string")
+                paths.push(r.sourcePath);
+            if (typeof r.path === "string")
+                paths.push(r.path);
+        }
+        for (const arr of [obj.candidates, obj.callers, obj.callees, obj.affectedFiles, obj.affectedTests]) {
+            for (const r of arr ?? [])
+                if (typeof r.path === "string")
+                    paths.push(r.path);
+        }
+        return paths;
     }
     catch {
         return [];

package/build/src/obs/usage.js.map

@@ -1 +1 @@
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package/build/src/server.js

@@ -20,8 +20,8 @@ import { join } from "node:path";
  * CodeLens MCP server (Step 24 wiring).
  *
  * Resolves the repo root from cwd, opens the core index DB and the contexts DB
- * (separate file), registers all 10 tools from the registry, and starts the
- * stdio transport. Auto-prune runs on startup + periodic idle timer.
+ * (separate file), registers all tools from the registry, and starts the stdio
+ * transport. Auto-prune runs on startup + periodic idle timer.
  */
 function createServer(ctx) {
     const server = new McpServer({ name: "codelens", version: VERSION });

package/build/src/tools/explore.js

@@ -0,0 +1,147 @@
+import { getActiveIndexId, getIndex } from "../index/manager.js";
+import { getPendingPaths } from "../index/staleness.js";
+import { neighbors } from "../graph/query.js";
+import { ctxSearch } from "./search.js";
+const DEFAULT_LIMIT = 8;
+const DEFAULT_MAX_FILES = 6;
+const DEFAULT_MAX_RESULTS_PER_FILE = 3;
+const DEFAULT_MAX_RELATED = 20;
+const DEFAULT_RELATED_DEPTH = 1;
+const MAX_RELATED_DEPTH = 3;
+const RELATED_SOURCE_LIMIT = 3;
+function clampPositive(value, fallback, max) {
+    if (value === undefined)
+        return fallback;
+    return Math.min(Math.max(1, Math.floor(value)), max);
+}
+function signatureFor(db, indexId, handle) {
+    if (!handle)
+        return undefined;
+    const row = db.prepare(`SELECT s.signature AS signature, s.name AS name, s.kind AS kind
+     FROM chunks c
+     LEFT JOIN symbols s ON s.id = c.symbol_id AND s.index_id = c.index_id
+     WHERE c.index_id = ? AND c.id = ?
+     LIMIT 1`).get(indexId, handle);
+    if (!row)
+        return undefined;
+    return row.signature ?? (row.kind && row.name ? `${row.kind} ${row.name}` : undefined);
+}
+function toExploreItem(hit, signature) {
+    const item = {
+        handle: hit.handle,
+        lines: hit.lines,
+        score: hit.score,
+        why: hit.why,
+        preview: hit.preview,
+    };
+    if (signature)
+        item.signature = signature;
+    if (hit.stale)
+        item.stale = true;
+    return item;
+}
+export function ctxExplore(db, query, opts) {
+    const indexId = getActiveIndexId();
+    if (!indexId || !getIndex(db, indexId))
+        throw new Error("no active index — call cl_refresh first");
+    const search = ctxSearch(db, query, {
+        limit: opts?.limit ?? DEFAULT_LIMIT,
+        cursor: opts?.cursor,
+        contentType: opts?.contentType,
+        snippet: opts?.snippet ?? "compact",
+    });
+    const pendingPaths = getPendingPaths(indexId);
+    const byFile = new Map();
+    const seenSignatureByFile = new Map();
+    for (const hit of search.results) {
+        let file = byFile.get(hit.path);
+        if (!file) {
+            file = { path: hit.path, results: [] };
+            if (pendingPaths.has(hit.path))
+                file.stale = true;
+            byFile.set(hit.path, file);
+        }
+        const signature = signatureFor(db, indexId, hit.handle);
+        if (signature) {
+            let seenForFile = seenSignatureByFile.get(hit.path);
+            if (!seenForFile) {
+                seenForFile = new Map();
+                seenSignatureByFile.set(hit.path, seenForFile);
+            }
+            const existing = seenForFile.get(signature);
+            if (existing) {
+                existing.collapsed = (existing.collapsed ?? 1) + 1;
+                continue;
+            }
+            const item = toExploreItem(hit, signature);
+            seenForFile.set(signature, item);
+            file.results.push(item);
+        }
+        else {
+            file.results.push(toExploreItem(hit));
+        }
+    }
+    const maxFiles = clampPositive(opts?.maxFiles, DEFAULT_MAX_FILES, 50);
+    const maxResultsPerFile = clampPositive(opts?.maxResultsPerFile, DEFAULT_MAX_RESULTS_PER_FILE, 20);
+    const maxRelated = clampPositive(opts?.maxRelated, DEFAULT_MAX_RELATED, 100);
+    let omittedResults = 0;
+    for (const file of byFile.values()) {
+        file.results.sort((a, b) => b.score - a.score || a.lines.localeCompare(b.lines));
+        if (file.results.length > maxResultsPerFile) {
+            omittedResults += file.results.length - maxResultsPerFile;
+            file.results = file.results.slice(0, maxResultsPerFile);
+        }
+    }
+    const orderedFiles = [...byFile.values()].sort((a, b) => {
+        const aScore = a.results[0]?.score ?? 0;
+        const bScore = b.results[0]?.score ?? 0;
+        return bScore - aScore || a.path.localeCompare(b.path);
+    });
+    const omittedFiles = Math.max(0, orderedFiles.length - maxFiles);
+    const files = orderedFiles.slice(0, maxFiles);
+    const relatedDepth = Math.min(Math.max(1, opts?.relatedDepth ?? DEFAULT_RELATED_DEPTH), MAX_RELATED_DEPTH);
+    const related = [];
+    const seenRelated = new Set();
+    for (const sourcePath of files.map((f) => f.path).slice(0, RELATED_SOURCE_LIMIT)) {
+        try {
+            for (const n of neighbors(db, indexId, sourcePath, { types: ["imports", "imported_by", "tests", "calls", "references"], depth: relatedDepth })) {
+                const key = `${sourcePath}\0${n.path}\0${n.edgeType}\0${n.hops}`;
+                if (seenRelated.has(key))
+                    continue;
+                seenRelated.add(key);
+                const item = { sourcePath, ...n };
+                if (pendingPaths.has(n.path))
+                    item.stale = true;
+                related.push(item);
+            }
+        }
+        catch {
+            // Graph is best-effort; search results remain useful without it.
+        }
+    }
+    related.sort((a, b) => a.hops - b.hops || b.confidence - a.confidence || a.sourcePath.localeCompare(b.sourcePath) || a.path.localeCompare(b.path));
+    const omittedRelated = Math.max(0, related.length - maxRelated);
+    const out = {
+        indexId,
+        query: search.query,
+        count: search.count,
+        files,
+        related: related.slice(0, maxRelated),
+        freshness: search.freshness,
+    };
+    const truncated = {};
+    if (omittedFiles > 0)
+        truncated.files = omittedFiles;
+    if (omittedResults > 0)
+        truncated.results = omittedResults;
+    if (omittedRelated > 0)
+        truncated.related = omittedRelated;
+    if (Object.keys(truncated).length > 0)
+        out.truncated = truncated;
+    if (search.pendingFiles !== undefined)
+        out.pendingFiles = search.pendingFiles;
+    if (search.nextCursor)
+        out.nextCursor = search.nextCursor;
+    return out;
+}
+//# sourceMappingURL=explore.js.map