@fodx/codelens 1.2.0 → 2.0.1

package/build/src/tools/search.js

@@ -3,21 +3,56 @@ import { extractSnippet, headlineSnippet } from "../search/snippet.js";
 import { rank, normalize } from "../search/rank.js";
 import { neighbors } from "../graph/query.js";
 import { ensureFreshIndex } from "../index/reindex.js";
+import { getPendingPaths } from "../index/staleness.js";
+import { splitIdentifiers } from "../search/identifiers.js";
+import { queryTokens, quoteFtsTerm } from "../search/query.js";
 const DEFAULT_LIMIT = 5;
 /** Ranks below this (0-indexed) keep a richer preview when no mode is forced. */
 const RICH_PREVIEW_TOP_N = 3;
+const QUERY_EXPANSION_MAX_TERMS = 16;
+function queryTerms(query) {
+    const original = queryTokens(query);
+    const seen = new Set(original.map((t) => t.toLowerCase()));
+    const expanded = splitIdentifiers(query, { maxTokens: QUERY_EXPANSION_MAX_TERMS });
+    const terms = [...original];
+    for (const term of expanded) {
+        const lower = term.toLowerCase();
+        if (seen.has(lower))
+            continue;
+        seen.add(lower);
+        terms.push(term);
+    }
+    return terms;
+}
 function ftsQuery(query) {
-    const terms = query.split(/[^A-Za-z0-9_]+/i).filter((t) => t.length > 0);
-    if (terms.length === 0)
+    const original = queryTokens(query);
+    if (original.length === 0)
         return "";
-    return terms.map((t) => `"${t}"`).join(" OR ");
+    const expressions = [];
+    const seen = new Set();
+    for (const term of original) {
+        const quoted = quoteFtsTerm(term);
+        if (!seen.has(quoted)) {
+            seen.add(quoted);
+            expressions.push(quoted);
+        }
+        const parts = splitIdentifiers(term, { maxTokens: QUERY_EXPANSION_MAX_TERMS });
+        if (parts.length > 1) {
+            const group = `(${parts.map(quoteFtsTerm).join(" AND ")})`;
+            if (!seen.has(group)) {
+                seen.add(group);
+                expressions.push(group);
+            }
+        }
+    }
+    return expressions.join(" OR ");
 }
 function gatherFts(db, indexId, fts, limit, contentType) {
     const typeClause = contentType ? " AND c.content_type = ?" : "";
     const params = contentType ? [fts, indexId, contentType, limit] : [fts, indexId, limit];
     return db
         .prepare(`SELECT c.path AS path, c.start_line AS startLine, c.end_line AS endLine,
-              c.content AS content, c.id AS chunkId, c.content_type AS contentType,
+              c.content AS content, c.id AS chunkId, c.symbol_id AS symbolId, c.content_type AS contentType,
               bm25(chunks_fts) AS rank
        FROM chunks_fts
        JOIN chunks c ON c.id = chunks_fts.chunk_id
@@ -28,9 +63,11 @@ function gatherFts(db, indexId, fts, limit, contentType) {
 /** Build hybrid signals (FTS + symbol + graph). */
 function buildSignals(db, indexId, query, ftsRows) {
     const ftsNorm = normalize(ftsRows.map((r) => -r.rank));
-    const terms = query.toLowerCase().split(/[^a-z0-9_]+/i).filter((t) => t.length > 1);
+    const terms = queryTerms(query).map((t) => t.toLowerCase()).filter((t) => t.length > 1);
     const symbolStmt = db.prepare(`SELECT 1 FROM symbols WHERE index_id = ? AND path = ? AND lower(name) LIKE ? LIMIT 1`);
     const exactStmt = db.prepare(`SELECT 1 FROM symbols WHERE index_id = ? AND path = ? AND lower(name) = ? LIMIT 1`);
+    const chunkSymbolStmt = db.prepare(`SELECT lower(name) AS name FROM symbols WHERE index_id = ? AND id = ? LIMIT 1`);
+    const symbolNameById = new Map();
     const topPaths = new Set(ftsRows.slice(0, 8).map((r) => r.path));
     const graphPaths = new Set();
     for (const p of topPaths) {
@@ -43,8 +80,20 @@ function buildSignals(db, indexId, query, ftsRows) {
         catch { /* ignore */ }
     }
     return ftsRows.map((r, i) => {
-        const symMatch = terms.some((t) => !!symbolStmt.get(indexId, r.path, "%" + t + "%"));
-        const exactMatch = terms.some((t) => !!exactStmt.get(indexId, r.path, t));
+        let chunkSymbolName = null;
+        if (r.symbolId) {
+            if (!symbolNameById.has(r.symbolId)) {
+                const row = chunkSymbolStmt.get(indexId, r.symbolId);
+                symbolNameById.set(r.symbolId, row?.name ?? null);
+            }
+            chunkSymbolName = symbolNameById.get(r.symbolId) ?? null;
+        }
+        const chunkSymMatch = !!chunkSymbolName && terms.some((t) => chunkSymbolName.includes(t));
+        const chunkExactMatch = !!chunkSymbolName && terms.some((t) => chunkSymbolName === t);
+        const fileSymMatch = terms.some((t) => !!symbolStmt.get(indexId, r.path, "%" + t + "%"));
+        const fileExactMatch = terms.some((t) => !!exactStmt.get(indexId, r.path, t));
+        const symMatch = chunkSymMatch ? 1 : (fileSymMatch ? 0.5 : 0);
+        const exactMatch = chunkExactMatch ? 1 : (fileExactMatch ? 0.5 : 0);
         const pathLower = r.path.toLowerCase();
         const pathMatch = terms.some((t) => pathLower.includes(t));
         return {
@@ -53,8 +102,8 @@ function buildSignals(db, indexId, query, ftsRows) {
             endLine: r.endLine,
             chunkId: r.chunkId,
             fts: ftsNorm[i],
-            symbol: symMatch ? 1 : 0,
-            exact: exactMatch ? 1 : 0,
+            symbol: symMatch,
+            exact: exactMatch,
             graph: graphPaths.has(r.path) ? 1 : 0,
             pathHit: pathMatch ? 1 : 0,
             code: r.contentType === "code" ? 1 : 0,
@@ -71,6 +120,14 @@ function prelude(db, opts) {
             pendingFiles = r.pending;
         }
     }
+    const indexId = getActiveIndexId();
+    if (indexId) {
+        const pending = getPendingPaths(indexId).size;
+        if (pending > 0) {
+            freshness = "partial";
+            pendingFiles = pending;
+        }
+    }
     return { freshness, pendingFiles };
 }
 export function ctxSearch(db, query, opts) {
@@ -82,8 +139,12 @@ export function ctxSearch(db, query, opts) {
     const limit = opts?.limit ?? DEFAULT_LIMIT;
     const offset = decodeCursor(opts?.cursor);
     const fts = ftsQuery(query);
-    if (fts.length === 0)
-        return { indexId, results: [], nextCursor: null, freshness: "fresh" };
+    if (fts.length === 0) {
+        const out = { indexId, query, count: 0, results: [], freshness };
+        if (pendingFiles !== undefined)
+            out.pendingFiles = pendingFiles;
+        return out;
+    }
     const ftsRows = gatherFts(db, indexId, fts, limit * 4, opts?.contentType);
     const signals = buildSignals(db, indexId, query, ftsRows);
     const ranked = rank(signals);
@@ -117,22 +178,28 @@ export function ctxSearch(db, query, opts) {
             case "full": return extractSnippet(src.content, query, 1500);
         }
     };
+    const pendingPaths = getPendingPaths(indexId);
     const results = page.map((r, i) => {
         const src = r.chunkId ? byChunk.get(r.chunkId) : undefined;
         const rankOffset = offset + i;
-        return {
+        const item = {
             handle: r.chunkId ?? "",
             path: r.path,
-            startLine: r.startLine,
-            endLine: r.endLine,
-            score: r.score,
-            snippet: src ? renderPreview(src, rankOffset) : r.path,
-            cursor: encodeCursor(rankOffset, r.chunkId ?? `${rankOffset}`),
-            why: r.why,
+            lines: `${r.startLine}-${r.endLine}`,
+            score: Math.round(r.score * 1000) / 1000,
+            why: r.why.join(","),
+            preview: src ? renderPreview(src, rankOffset) : "",
         };
+        if (pendingPaths.has(r.path))
+            item.stale = true;
+        return item;
     });
     const nextCursor = hasMore && results.length > 0 ? encodeCursor(offset + results.length, results[results.length - 1].handle || `${offset}`) : null;
-    const out = { indexId, results, nextCursor, freshness, pendingFiles };
+    const out = { indexId, query, count: results.length, results, freshness };
+    if (pendingFiles !== undefined)
+        out.pendingFiles = pendingFiles;
+    if (nextCursor)
+        out.nextCursor = nextCursor;
     if (opts?.related && results[0]) {
         try {
             out.related = neighbors(db, indexId, results[0].path, { types: ["imports", "imported_by", "tests"], depth: 1 });

package/build/src/tools/search.js.map

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package/docs/agent-guide.md

@@ -11,11 +11,17 @@ End-to-end workflow for a coding agent using codelens.
 2. cl_refresh
    → { indexedFiles: 812, totalChunks: 2400, status: "ready" }
 
-3. cl_search(query: "session validation")
-   → results: [
-       { handle: "chk_…", path: "src/auth/session.ts", symbol: "validateSession",
-         startLine: 12, endLine: 58, score: 0.92, why: ["fts","symbol","graph"] }
-     ]
+3. cl_explore(query: "session validation flow")
+   → { query: "session validation flow", count: 3,
+       files: [{ path: "src/auth/session.ts", results: [{ handle: "chk_…", lines: "12-58", preview: "export function validateSession…" }] }],
+       related: [{ sourcePath: "src/auth/session.ts", path: "src/routes/login.ts", edgeType: "imported_by", hops: 1 }] }
+
+   # If you only need to locate a handle, use the leaner search tool:
+   cl_search(query: "session validation")
+   → { query: "session validation", count: 1, results: [
+       { handle: "chk_…", path: "src/auth/session.ts", lines: "12-58",
+         score: 0.92, why: "fts,symbol,graph", preview: "export function validateSession(token: string): boolean" }
+     ] }
 
 4. cl_related(path: "src/auth/session.ts", types: ["tests","imported_by"])
    → results: [
@@ -24,6 +30,10 @@ End-to-end workflow for a coding agent using codelens.
      ]
    # TS/JS also populate `calls`/`references` and resolve dynamic import().
 
+   # Before changing shared code, ask for the blast radius.
+   cl_impact(symbol: "validateSession", path: "src/auth/session.ts")
+   → { callers: [...], callees: [...], affectedFiles: [...], affectedTests: [...], confidenceNote: "…" }
+
    # Orientation (optional): outline a file or directory without reading it.
    cl_map(path: "src/auth")
    → files: [{ path: "src/auth/session.ts", symbols: [{ name: "validateSession", kind: "function", signature: "export function validateSession(token: string): boolean" }] }]
@@ -37,6 +47,14 @@ End-to-end workflow for a coding agent using codelens.
 8. cl_load(name: "auth-investigation")   # after compaction
 ```
 
+## Tool choice
+
+- Use `cl_explore` for broad questions: "how does X work?", "show the flow around Y", or surveying an unfamiliar area. It combines search, compact source previews, and relationships in one call.
+- Use `cl_search` when you only need ranked handles/locations.
+- Use `cl_related` to expand from a known file.
+- Use `cl_impact` before editing shared code to see callers/callees/affected tests.
+- Use `cl_expand` (or raw read) for exact current file content before editing.
+
 ## Branch switch
 
 ```
@@ -46,6 +64,10 @@ cl_refresh   → builds feature-b index; main's results no longer leak in
 ```
 
 
+## Freshness and stale results
+
+Query tools reconcile changed files before answering. If a response includes `freshness: "partial"`, `pendingFiles`, or per-result `stale:true`, read those stale files directly (`cl_expand` or raw read) before relying on indexed previews/edges.
+
 ## Saving context across compaction
 
 `cl_save` / `cl_load` persist named handle sets in a **separate** DB that

package/docs/routing.md

@@ -14,14 +14,16 @@ right tool for the job.
 
 Prefer codelens when:
 - you don't know the exact name/string (semantic or conceptual search via `cl_search`)
-- you need relationships — importers, tests, callers (`cl_related`) — or a
-  per-file outline / repo map (`cl_map`)
+- you need broad orientation in one call (`cl_explore`) — "how does X work?", flows, or unfamiliar areas
+- you need relationships — importers, tests, callers (`cl_related`) — or blast radius before edits (`cl_impact`)
+- you need a per-file outline / repo map (`cl_map`)
 - the repo is large or unfamiliar, or you'd otherwise grep + read many files
 - branch-scoped correctness matters (results won't leak across branches)
 
 Then use `cl_expand` to read the exact current content of a chosen target (it
 reads from disk — never stale), and `cl_save`/`cl_load` to persist working
-context across compaction.
+context across compaction. If a query result has `stale:true`, read that file
+from disk before relying on indexed snippets/edges.
 
 ## When raw grep/find/read is fine (or better)
 
@@ -44,9 +46,11 @@ branch's index automatically.
 
 ## Freshness
 
-`cl_search` auto-refreshes changed files before returning (budget-bounded). If
-the response carries `freshness: "partial"` and `pendingFiles > 0`, some very
-recent edits may not yet be reflected — call `cl_refresh` or re-query.
+Query tools auto-refresh changed files before returning (budget-bounded). If
+the response carries `freshness: "partial"`, `pendingFiles > 0`, or per-result
+`stale:true`, some recent edits were not reindexed within the budget. Read those
+files directly with `cl_expand`/raw read, then call `cl_refresh` or re-query when
+you need indexed relationships to catch up.
 
 ## Tool quick reference
 
@@ -55,7 +59,9 @@ recent edits may not yet be reflected — call `cl_refresh` or re-query.
 | `cl_current` | repo/branch/index status + freshness |
 | `cl_refresh` | build/update the current branch index |
 | `cl_search` | hybrid ranked search → compact handles |
+| `cl_explore` | one-call grouped search + previews + relationship map |
 | `cl_related` | graph neighbors (imports/tests/callers) |
+| `cl_impact` | callers/callees/affected files/tests before edits |
 | `cl_map` | per-file symbol outline (repo map) |
 | `cl_expand` | exact current file content by path/range |
 | `cl_save` / `cl_load` | persist + reload working context |

package/docs/tools.md

@@ -15,21 +15,37 @@ JSON-serialized text content.
 
 ## cl_search
 - **Input**: `{ query: string, limit?: number=5, cursor?: string, contentType?: "code"|"prose", related?: boolean, snippet?: "none"|"headline"|"compact"|"full" }`
-- **Returns**: `{ indexId, results:[{handle,path,startLine,endLine,score,snippet,why}], nextCursor, freshness, pendingFiles, related? }`
+- **Returns**: `{ indexId, query, count, results:[{handle,path,lines,score,why,preview,stale?}], freshness, nextCursor?, pendingFiles?, related? }`
+  - `lines` is `"start-end"`; `why` is a comma-joined signal string; `preview` is a short highlighted snippet (empty when `snippet:"none"`). Use `handle` with `cl_expand`/`cl_save`. Pagination uses the top-level `nextCursor` (no per-result cursor). If `stale:true`, read that file from disk (`cl_expand`/raw read) before relying on indexed content.
 - **Use**: intent-level code discovery.
+- **Identifier matching**: code identifiers are indexed with bounded subtokens (`validateSession` also matches `session`) in the match-only FTS text. Query expansion uses the same bounded splitter and preserves snippets/handles from stored chunk content.
 - **`snippet` (preview verbosity)**: default is signature-first `headline` (richer `compact` for the top ~3 results), which keeps payloads small. `none` returns path+lines only (fetch with `cl_expand`); `compact`/`full` return larger code windows. Explicitly setting `snippet` applies that mode to all results.
 - **`why` signals**: `fts|symbol|exact|graph|path|code` (exact = exact symbol-name match; path = query term in the file path). Ranking is deterministic with a stable tie-break.
+- **Line-range format**: `cl_search` reports `lines` as a `"start-end"` string for compact display; `cl_map` and `cl_expand` use numeric `startLine`/`endLine` for programmatic use. This difference is intentional.
+
+## cl_explore
+- **Input**: `{ query: string, limit?: number=8, cursor?: string, contentType?: "code"|"prose", snippet?: "none"|"headline"|"compact"|"full", relatedDepth?: number=1 }`
+- **Returns**: `{ indexId, query, count, files:[{path, stale?, results:[{handle,lines,score,why,preview,signature?,collapsed?,stale?}]}], related:[{sourcePath,path,edgeType,hops,confidence,stale?}], freshness, pendingFiles?, nextCursor? }`
+- **Use**: broad orientation in one call — "how does X work?", "show the flow around Y", or surveying an unfamiliar area. It fuses `cl_search` + grouped previews + graph relationships; use `cl_search` when you only need to locate handles.
 
 ## cl_related
 - **Input**: `{ path: string, types?: string[], depth?: number=2, direction?: "out"|"in"|"both" }`
-- **Returns**: `{ indexId, results:[{handle,path,edgeType,hops,confidence}] }`
+- **Returns**: `{ indexId, results:[{handle,path,edgeType,hops,confidence,stale?}], freshness?, pendingFiles? }`
 - **Edge types**: `imports|imported_by|tests|calls|references|defines|exports|belongs_to` (TS/JS populate `calls`/`references` and resolve dynamic `import()`).
 
+## cl_impact
+- **Input**: `{ symbol?: string, path?: string, depth?: number=2, includeTests?: boolean=true }`
+- **Returns**: `{ indexId, target?, candidates?, callers, callees, affectedFiles, affectedTests, depth, confidenceNote, freshness?, pendingFiles? }`
+- **Use**: before changing shared code. Pass `symbol` plus `path` when possible; if a symbol is ambiguous, CodeLens returns `candidates` instead of guessing. Impact is edge-derived and includes confidence/hop counts; use `cl_expand` to inspect exact current code before editing.
+
 ## cl_map
 - **Input**: `{ path?: string, limit?: number=50, all?: boolean }`
-- **Returns**: `{ indexId, files:[{path, symbols:[{name,kind,signature,startLine,endLine,exported}]}], fileCount, truncated }`
+- **Returns**: `{ indexId, files:[{path, stale?, symbols:[{name,kind,signature,startLine,endLine,exported}]}], fileCount, truncated, freshness?, pendingFiles? }`
 - **Use**: outline / repo-map for orientation — per-file symbol signatures from the index (no file re-read). Defaults to exported symbols; pass `all:true` for everything. File-capped (default 50, max 200) with a `truncated` flag.
 
+## Freshness and stale flags
+Query tools perform a budget-bounded reconciliation before answering. If the response has `freshness:"partial"` and `pendingFiles > 0`, some changed files were not reindexed within the budget. Results/files with `stale:true` point at those known-stale paths; read them directly with `cl_expand` or a raw read before depending on indexed previews/edges.
+
 ## cl_expand
 - **Input**: `{ path?: string, handle?: string, startLine?: number, endLine?: number, budget?: number=4000 }`
 - **Returns**: `{ path, startLine, endLine, content, truncated, chars }`

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fodx/codelens",
-  "version": "1.2.0",
+  "version": "2.0.1",
   "description": "Local, branch-aware code search & relation graph. SQLite FTS5 + tree-sitter symbols + source-graph edges, exposed as an MCP server and CLI. No chat LLM required.",
   "license": "MIT",
   "type": "module",
@@ -57,7 +57,8 @@
     "prepublishOnly": "npm run build",
     "mcp:smoke": "node build/src/server.js --smoke",
     "start": "node build/src/server.js",
-    "benchmark": "npx tsx bench/run.ts"
+    "benchmark": "npx tsx bench/run.ts",
+    "quality": "npx tsx bench/quality.ts"
   },
   "dependencies": {
     "@modelcontextprotocol/sdk": "^1.26.0",