@fodx/codelens 1.0.0 → 1.2.0

package/README.md

@@ -149,9 +149,10 @@ node build/src/server.js
 
 1. In your repo, the agent calls `cl_current` (builds index if missing) or
    `cl_refresh` explicitly.
-2. `cl_search(query: "session validation")` → ranked handles.
-3. `cl_related(path: "src/auth/session.ts", types: ["tests"])` → tests.
-4. `cl_expand(path: "src/auth/session.ts", startLine: 12, endLine: 58)` → exact code.
+2. `cl_search(query: "session validation")` → ranked handles (signature-first previews; pass `snippet:"full"` for more).
+3. `cl_related(path: "src/auth/session.ts", types: ["tests"])` → tests/callers.
+4. `cl_map(path: "src/auth")` → per-file symbol outline for orientation.
+5. `cl_expand(path: "src/auth/session.ts", startLine: 12, endLine: 58)` → exact code.
 
 See [`docs/agent-guide.md`](docs/agent-guide.md) for a full walkthrough,
 [`docs/tools.md`](docs/tools.md) for the tool reference, and

package/adapters/pi/codelens.extension.ts

@@ -62,6 +62,18 @@ function resolveServer(): ServerSpec | null {
 
 interface JsonRpcResponse { id?: number; result?: unknown; error?: { message: string }; }
 interface ToolDef { name: string; description?: string; inputSchema?: Record<string, unknown>; }
+interface PiCommandContext { ui: { notify(message: string, level?: string): void } }
+interface PiExtensionAPI {
+  registerTool(tool: {
+    name: string;
+    label: string;
+    description: string;
+    parameters: Record<string, unknown>;
+    execute(id: string, params: unknown): Promise<{ content: Array<{ type: "text"; text: string }>; details: Record<string, unknown> }>;
+  }): void;
+  registerCommand(name: string, command: { description: string; handler(args: string, ctx: PiCommandContext): Promise<void> | void }): void;
+  on(name: string, handler: (event: { systemPrompt?: string; systemPromptOptions?: { cwd?: string } }) => Promise<unknown> | unknown): void;
+}
 
 class McpStdioClient {
   private proc: ChildProcess | null = null;
@@ -136,37 +148,39 @@ class McpStdioClient {
 const ROUTING = `
 ## CodeLens (code context index) — routing
 
-A local branch-scoped code index is available via these tools. For codebase
-DISCOVERY, prefer them over grep/find/read:
-- cl_current  — repo/branch/index status (call if unsure whether index is ready)
-- cl_search   — ranked semantic+lexical search over the current branch index;
-                 returns compact handles (path + line range + score). Pass
-                 contentType:"code" for source only. Auto-builds the index on
-                 first use, so you can call it directly.
-- cl_related  — graph neighbors of a file/symbol (tests, importers, callers)
+A local branch-scoped code index is available via these tools:
+- cl_current  — repo/branch/index status (call if unsure whether the index is ready)
+- cl_search   — ranked semantic+lexical search → compact handles (path + line range + score)
+- cl_related  — graph neighbors of a file/symbol (imports/importers/tests/callers)
+- cl_map      — per-file symbol outline (repo map) for quick orientation
 - cl_expand   — exact current file content by path/range (reads disk, never stale)
 
-Rules:
-- Use cl_search / cl_related BEFORE grep, find, or reading multiple files to
-  locate code. It keeps your context lean and is branch-aware.
-- Use raw read ONLY for the exact file you are about to edit or verify, not for
-  discovery.
-- After \`git checkout\`, results auto-scope to the new branch; call cl_current
-  if you want to confirm index status.
-- If cl_search returns nothing relevant, fall back to grep/read as usual.
+Prefer cl_* for discovery when:
+- you don't know the exact name/string (semantic or conceptual search)
+- you need relationships (importers, tests, callers) or a quick outline
+- the repo is large or unfamiliar, or you'd otherwise grep + read many files
+- branch-scoped correctness matters (results won't leak across branches)
+
+Raw grep/find/read is fine (or better) when:
+- you already know an exact string/symbol/path
+- you're reading or editing a single known file
+- the repo is tiny or familiar
 
-You do NOT need the user's permission to use these tools — they are the
-preferred discovery path.`;
+Always use cl_expand or a raw read for the exact file you're about to edit.
+After \`git checkout\`, results auto-scope to the new branch; call cl_current to
+confirm. You do NOT need the user's permission to use these tools.`;
 
 // ── Extension entry ──────────────────────────────────────────
 
-export default function (pi: import("@earendil-works/pi-coding-agent").ExtensionAPI) {
+export default function (pi: PiExtensionAPI) {
   const spec = resolveServer();
   if (!spec) {
     process.stderr.write(`[codelens] server not found. Run \`codelens install\` (writes ~/.codelens/server-path), or set CODELENS_SERVER=<path>/build/src/server.js, or run install.sh.\n`);
     return;
   }
 
+  const serverSpec = spec;
+
   // Mutable bridge holder. Tools' execute() closures reference `client` and
   // `bridged` directly, so reassigning them on a project switch re-points every
   // tool at the new server child (no re-registration needed).
@@ -178,7 +192,7 @@ export default function (pi: import("@earendil-works/pi-coding-agent").Extension
   async function boot(cwd: string): Promise<void> {
     try { client?.shutdown(); } catch { /* ignore */ }
     const c = new McpStdioClient();
-    c.start(spec, cwd); // spawn the server with cwd = the current project
+    c.start(serverSpec, cwd); // spawn the server with cwd = the current project
     await c.initialize();
     const tools = await c.listTools();
     if (!toolsRegistered) {

package/build/src/cli.js

@@ -229,7 +229,7 @@ function defaultServerCommand() {
     // Dev fallback: the currently running server.js (only meaningful for --print-config).
     try {
         const here = dirname(fileURLToPath(import.meta.url));
-        const serverJs = join(here, "..", "server.js");
+        const serverJs = join(here, "server.js");
         if (existsSync(serverJs))
             return serverJs;
     }
@@ -244,21 +244,23 @@ function parseInstallArgs(args) {
     const rest = [];
     for (let i = 0; i < args.length; i++) {
         const a = args[i];
-        if (a === "--target") {
-            const v = args[++i];
+        if (a === "--target" || a.startsWith("--target=")) {
+            const v = a.includes("=") ? a.slice(a.indexOf("=") + 1) : args[++i];
             target = v === "all" || v === "auto" || v === "none" ? v : (v ?? "").split(",");
         }
-        else if (a === "--location") {
-            const v = args[++i];
+        else if (a === "--location" || a.startsWith("--location=")) {
+            const v = a.includes("=") ? a.slice(a.indexOf("=") + 1) : args[++i];
             if (v === "local" || v === "global")
                 location = v;
         }
         else if (a === "--yes" || a === "-y")
             yes = true;
-        else if (a === "--command")
-            command = args[++i];
-        else if (a === "--args")
-            rest.push(...(args[++i] ?? "").split(" "));
+        else if (a === "--command" || a.startsWith("--command="))
+            command = a.includes("=") ? a.slice(a.indexOf("=") + 1) : args[++i];
+        else if (a === "--args" || a.startsWith("--args=")) {
+            const v = a.includes("=") ? a.slice(a.indexOf("=") + 1) : args[++i];
+            rest.push(...(v ?? "").split(" "));
+        }
     }
     return { target, location, yes, command, args: rest };
 }

package/build/src/cli.js.map

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package/build/src/git/scope.js

@@ -52,16 +52,18 @@ export function listDirty(cwd) {
     const r = spawnSync("git", ["status", "--porcelain", "-z"], { cwd, encoding: "utf-8" });
     if (r.error || r.status !== 0)
         return [];
-    // -z separates records by NUL; each record is "XY path" (or "XY orig -> path" for renames).
-    const out = r.stdout ?? "";
+    // -z separates records by NUL. Rename/copy records are encoded as
+    // "XY new-path\0old-path\0", so consume the old-path record explicitly.
+    const records = (r.stdout ?? "").split("\0").filter((rec) => rec.length > 0);
     const files = [];
-    for (const rec of out.split("\0")) {
-        if (rec.length === 0)
+    for (let i = 0; i < records.length; i++) {
+        const rec = records[i];
+        if (rec.length < 4)
             continue;
-        // status code is 2 chars, then a space, then path (possibly "orig -> path").
-        const path = rec.slice(3);
-        const finalPath = path.includes(" -> ") ? path.split(" -> ")[1] ?? path : path;
-        files.push(toPosix(finalPath));
+        const status = rec.slice(0, 2);
+        files.push(toPosix(rec.slice(3)));
+        if (status.includes("R") || status.includes("C"))
+            i++;
     }
     return files;
 }

package/build/src/git/scope.js.map

@@ -1 +1 @@
-{"version":3,"file":"scope.js","sourceRoot":"","sources":["../../../src/git/scope.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAC/C,OAAO,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAoBxD,SAAS,GAAG,CAAC,GAAW,EAAE,IAAc;IACtC,MAAM,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,IAAI,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAC,CAAC;IAC7D,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,IAAI,EAAE,EAAE,CAAC;IAC5E,OAAO,EAAE,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,EAAE,EAAE,CAAC;AAC/C,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,WAAW,CAAC,GAAW;IACrC,MAAM,IAAI,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,iBAAiB,CAAC,CAAC,CAAC;IACxD,IAAI,CAAC,IAAI,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC;IACtD,MAAM,QAAQ,GAAG,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAE1C,6EAA6E;IAC7E,gFAAgF;IAChF,MAAM,SAAS,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC,CAAC;IAC9D,MAAM,MAAM,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,oBAAoB,CAAC,CAAC,CAAC;IAC7D,0EAA0E;IAC1E,6EAA6E;IAC7E,MAAM,YAAY,GAAG,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAE9C,MAAM,IAAI,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,MAAM,CAAC,CAAC,CAAC;IAC7C,IAAI,CAAC,IAAI,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzC,kEAAkE;QAClE,OAAO;YACL,QAAQ;YACR,YAAY;YACZ,MAAM,EAAE,UAAU;YAClB,OAAO,EAAE,EAAE;YACX,UAAU,EAAE,SAAS,CAAC,GAAG,CAAC;YAC1B,QAAQ,EAAE,IAAI;SACf,CAAC;IACJ,CAAC;IACD,MAAM,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC;IAE5B,MAAM,SAAS,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,QAAQ,EAAE,gBAAgB,CAAC,CAAC,CAAC;IACzD,MAAM,QAAQ,GAAG,CAAC,SAAS,CAAC,EAAE,IAAI,SAAS,CAAC,MAAM,CAAC,MAAM,KAAK,CAAC,CAAC;IAChE,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC;IAExD,6EAA6E;IAC7E,KAAK,SAAS,CAAC;IACf,KAAK,MAAM,CAAC;IAEZ,OAAO;QACL,QAAQ;QACR,YAAY;QACZ,MAAM;QACN,OAAO;QACP,UAAU,EAAE,SAAS,CAAC,GAAG,CAAC;QAC1B,QAAQ;KACT,CAAC;AACJ,CAAC;AAED,kFAAkF;AAClF,MAAM,UAAU,SAAS,CAAC,GAAW;IACnC,MAAM,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,CAAC,QAAQ,EAAE,aAAa,EAAE,IAAI,CAAC,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAC,CAAC;IACxF,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IACzC,4FAA4F;IAC5F,MAAM,GAAG,GAAG,CAAC,CAAC,MAAM,IAAI,EAAE,CAAC;IAC3B,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;QAClC,IAAI,GAAG,CAAC,MAAM,KAAK,CAAC;YAAE,SAAS;QAC/B,6EAA6E;QAC7E,MAAM,IAAI,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC1B,MAAM,SAAS,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC;QAC/E,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC;IACjC,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC"}
+{"version":3,"file":"scope.js","sourceRoot":"","sources":["../../../src/git/scope.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAC/C,OAAO,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAoBxD,SAAS,GAAG,CAAC,GAAW,EAAE,IAAc;IACtC,MAAM,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,IAAI,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAC,CAAC;IAC7D,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,IAAI,EAAE,EAAE,CAAC;IAC5E,OAAO,EAAE,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,EAAE,EAAE,CAAC;AAC/C,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,WAAW,CAAC,GAAW;IACrC,MAAM,IAAI,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,iBAAiB,CAAC,CAAC,CAAC;IACxD,IAAI,CAAC,IAAI,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC;IACtD,MAAM,QAAQ,GAAG,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAE1C,6EAA6E;IAC7E,gFAAgF;IAChF,MAAM,SAAS,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAC,CAAC;IAC9D,MAAM,MAAM,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,oBAAoB,CAAC,CAAC,CAAC;IAC7D,0EAA0E;IAC1E,6EAA6E;IAC7E,MAAM,YAAY,GAAG,WAAW,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAE9C,MAAM,IAAI,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,MAAM,CAAC,CAAC,CAAC;IAC7C,IAAI,CAAC,IAAI,CAAC,EAAE,IAAI,IAAI,CAAC,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzC,kEAAkE;QAClE,OAAO;YACL,QAAQ;YACR,YAAY;YACZ,MAAM,EAAE,UAAU;YAClB,OAAO,EAAE,EAAE;YACX,UAAU,EAAE,SAAS,CAAC,GAAG,CAAC;YAC1B,QAAQ,EAAE,IAAI;SACf,CAAC;IACJ,CAAC;IACD,MAAM,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC;IAE5B,MAAM,SAAS,GAAG,GAAG,CAAC,GAAG,EAAE,CAAC,QAAQ,EAAE,gBAAgB,CAAC,CAAC,CAAC;IACzD,MAAM,QAAQ,GAAG,CAAC,SAAS,CAAC,EAAE,IAAI,SAAS,CAAC,MAAM,CAAC,MAAM,KAAK,CAAC,CAAC;IAChE,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC;IAExD,6EAA6E;IAC7E,KAAK,SAAS,CAAC;IACf,KAAK,MAAM,CAAC;IAEZ,OAAO;QACL,QAAQ;QACR,YAAY;QACZ,MAAM;QACN,OAAO;QACP,UAAU,EAAE,SAAS,CAAC,GAAG,CAAC;QAC1B,QAAQ;KACT,CAAC;AACJ,CAAC;AAED,kFAAkF;AAClF,MAAM,UAAU,SAAS,CAAC,GAAW;IACnC,MAAM,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,CAAC,QAAQ,EAAE,aAAa,EAAE,IAAI,CAAC,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAC,CAAC;IACxF,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IACzC,kEAAkE;IAClE,wEAAwE;IACxE,MAAM,OAAO,GAAG,CAAC,CAAC,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAC7E,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACxC,MAAM,GAAG,GAAG,OAAO,CAAC,CAAC,CAAE,CAAC;QACxB,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC;YAAE,SAAS;QAC7B,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QAC/B,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAClC,IAAI,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC;YAAE,CAAC,EAAE,CAAC;IACxD,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC"}

package/build/src/graph/edges.js

@@ -25,6 +25,28 @@ function* iterAll(node) {
 function stripQuotes(s) {
     return s.replace(/^["'`]|["'`]$/g, "");
 }
+/** Safe `childForFieldName` accessor (the tree-sitter type doesn't declare it). */
+function childField(node, field) {
+    return node.childForFieldName?.(field) ?? null;
+}
+/** First string literal inside a call's argument list (for dynamic import()). */
+function firstStringArg(call) {
+    const scan = childField(call, "arguments") ?? call;
+    for (const c of iterAll(scan)) {
+        if (c.type === "string" || c.type === "string_fragment")
+            return stripQuotes(c.text);
+    }
+    return null;
+}
+/** Local binding names introduced by an import statement (TS/JS). */
+function importBindingNames(node) {
+    const names = [];
+    for (const c of iterAll(node)) {
+        if (c.type === "identifier")
+            names.push(c.text);
+    }
+    return names;
+}
 /**
  * Extract edges for a single file. `knownFiles` (repo-relative POSIX set) is
  * used to resolve imports to indexed files; falls back to the filesystem.
@@ -42,23 +64,59 @@ export function extractEdges(path, lang, source, repoRoot, knownFiles) {
     }
     const out = [];
     const root = tree.rootNode;
-    // Walk for import statements.
+    const jsts = lang === "typescript" || lang === "javascript";
+    // local import name -> resolved target file (TS/JS, for calls/references)
+    const bindings = new Map();
+    const resolveSpec = (spec) => spec ? (resolveImportFs(repoRoot, path, spec) ?? resolveImport(path, spec, knownFiles)) : null;
+    // Pass 1: imports (static + dynamic). Unresolved imports emit a 0-confidence
+    // edge that insertEdges filters out (no edge beats a wrong edge).
     for (const node of iterAll(root)) {
         if (node.type === "import_statement" || node.type === "import_declaration" || node.type === "import_from_statement") {
-            const spec = importSpec(node);
-            if (!spec)
-                continue;
-            const target = resolveImportFs(repoRoot, path, spec) ?? resolveImport(path, spec, knownFiles);
-            out.push({
-                fromPath: path,
-                toPath: target,
-                fromSymbol: null,
-                toSymbol: null,
-                type: "imports",
-                confidence: target ? 0.9 : 0.0,
-            });
-            if (!target) {
-                // unresolved — keep no-edge policy (confidence 0 filtered on insert)
+            const target = resolveSpec(importSpec(node));
+            out.push({ fromPath: path, toPath: target, fromSymbol: null, toSymbol: null, type: "imports", confidence: target ? 0.9 : 0.0 });
+            if (jsts && target)
+                for (const name of importBindingNames(node))
+                    bindings.set(name, target);
+        }
+        else if (node.type === "call_expression") {
+            const fn = childField(node, "function");
+            if (fn && (fn.type === "import" || fn.text === "import")) {
+                // dynamic import("…")
+                const target = resolveSpec(firstStringArg(node));
+                out.push({ fromPath: path, toPath: target, fromSymbol: null, toSymbol: null, type: "imports", confidence: target ? 0.9 : 0.0 });
+            }
+        }
+    }
+    // Pass 2 (TS/JS only): calls + references resolved THROUGH import bindings, so
+    // every emitted edge points at a known file. Deduped per (target, type) to
+    // keep the graph compact.
+    if (jsts && bindings.size > 0) {
+        const callsSeen = new Set();
+        const refsSeen = new Set();
+        for (const node of iterAll(root)) {
+            if (node.type === "call_expression") {
+                const fn = childField(node, "function");
+                if (!fn)
+                    continue;
+                let callee = null;
+                if (fn.type === "identifier")
+                    callee = fn.text;
+                else if (fn.type === "member_expression") {
+                    const obj = childField(fn, "object");
+                    if (obj && obj.type === "identifier")
+                        callee = obj.text; // ns.foo()
+                }
+                if (callee && bindings.has(callee) && !callsSeen.has(callee)) {
+                    callsSeen.add(callee);
+                    out.push({ fromPath: path, toPath: bindings.get(callee), fromSymbol: null, toSymbol: callee, type: "calls", confidence: 0.7 });
+                }
+            }
+            else if (node.type === "member_expression") {
+                const obj = childField(node, "object");
+                if (obj && obj.type === "identifier" && bindings.has(obj.text) && !refsSeen.has(obj.text)) {
+                    refsSeen.add(obj.text);
+                    out.push({ fromPath: path, toPath: bindings.get(obj.text), fromSymbol: null, toSymbol: obj.text, type: "references", confidence: 0.6 });
+                }
             }
         }
     }

package/build/src/graph/edges.js.map

@@ -1 +1 @@
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+{"version":3,"file":"edges.js","sourceRoot":"","sources":["../../../src/graph/edges.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAEzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAC;AAC3C,OAAO,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAmB9D,qDAAqD;AACrD,MAAM,kBAAkB,GAAG,CAAC,QAAQ,EAAE,aAAa,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;AAErE,SAAS,UAAU,CAAC,IAAuB;IACzC,0BAA0B;IAC1B,KAAK,MAAM,CAAC,IAAI,kBAAkB,EAAE,CAAC;QACnC,MAAM,KAAK,GAAI,IAAmF,CAAC,iBAAiB,EAAE,CAAC,CAAC,CAAC,CAAC;QAC1H,IAAI,KAAK;YAAE,OAAO,WAAW,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC5C,CAAC;IACD,4BAA4B;IAC5B,KAAK,MAAM,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;QAC9B,IAAI,CAAC,CAAC,IAAI,KAAK,QAAQ,IAAI,CAAC,CAAC,IAAI,KAAK,iBAAiB;YAAE,OAAO,WAAW,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IACtF,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,QAAQ,CAAC,CAAC,OAAO,CAAC,IAAuB;IACvC,MAAM,IAAI,CAAC;IACX,KAAK,MAAM,CAAC,IAAI,IAAI,CAAC,QAAQ;QAAE,KAAK,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;AACnD,CAAC;AAED,SAAS,WAAW,CAAC,CAAS;IAC5B,OAAO,CAAC,CAAC,OAAO,CAAC,gBAAgB,EAAE,EAAE,CAAC,CAAC;AACzC,CAAC;AAED,mFAAmF;AACnF,SAAS,UAAU,CAAC,IAAuB,EAAE,KAAa;IACxD,OAAQ,IAAmF,CAAC,iBAAiB,EAAE,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC;AACjI,CAAC;AAED,iFAAiF;AACjF,SAAS,cAAc,CAAC,IAAuB;IAC7C,MAAM,IAAI,GAAG,UAAU,CAAC,IAAI,EAAE,WAAW,CAAC,IAAI,IAAI,CAAC;IACnD,KAAK,MAAM,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;QAC9B,IAAI,CAAC,CAAC,IAAI,KAAK,QAAQ,IAAI,CAAC,CAAC,IAAI,KAAK,iBAAiB;YAAE,OAAO,WAAW,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IACtF,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,qEAAqE;AACrE,SAAS,kBAAkB,CAAC,IAAuB;IACjD,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;QAC9B,IAAI,CAAC,CAAC,IAAI,KAAK,YAAY;YAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IAClD,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,YAAY,CAAC,IAAY,EAAE,IAAY,EAAE,MAAc,EAAE,QAAgB,EAAE,UAAuB;IAChH,MAAM,MAAM,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;IAChC,IAAI,CAAC,MAAM;QAAE,OAAO,EAAE,CAAC;IACvB,IAAI,IAAiB,CAAC;IACtB,IAAI,CAAC;QACH,IAAI,GAAG,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;IAC9B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,CAAC;IACZ,CAAC;IACD,MAAM,GAAG,GAAoB,EAAE,CAAC;IAChC,MAAM,IAAI,GAAG,IAAI,CAAC,QAAQ,CAAC;IAC3B,MAAM,IAAI,GAAG,IAAI,KAAK,YAAY,IAAI,IAAI,KAAK,YAAY,CAAC;IAE5D,0EAA0E;IAC1E,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC3C,MAAM,WAAW,GAAG,CAAC,IAAmB,EAAiB,EAAE,CACzD,IAAI,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,QAAQ,EAAE,IAAI,EAAE,IAAI,CAAC,IAAI,aAAa,CAAC,IAAI,EAAE,IAAI,EAAE,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAEjG,6EAA6E;IAC7E,kEAAkE;IAClE,KAAK,MAAM,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;QACjC,IAAI,IAAI,CAAC,IAAI,KAAK,kBAAkB,IAAI,IAAI,CAAC,IAAI,KAAK,oBAAoB,IAAI,IAAI,CAAC,IAAI,KAAK,uBAAuB,EAAE,CAAC;YACpH,MAAM,MAAM,GAAG,WAAW,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC;YAC7C,GAAG,CAAC,IAAI,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC;YAChI,IAAI,IAAI,IAAI,MAAM;gBAAE,KAAK,MAAM,IAAI,IAAI,kBAAkB,CAAC,IAAI,CAAC;oBAAE,QAAQ,CAAC,GAAG,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;QAC9F,CAAC;aAAM,IAAI,IAAI,CAAC,IAAI,KAAK,iBAAiB,EAAE,CAAC;YAC3C,MAAM,EAAE,GAAG,UAAU,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC;YACxC,IAAI,EAAE,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,QAAQ,IAAI,EAAE,CAAC,IAAI,KAAK,QAAQ,CAAC,EAAE,CAAC;gBACzD,sBAAsB;gBACtB,MAAM,MAAM,GAAG,WAAW,CAAC,cAAc,CAAC,IAAI,CAAC,CAAC,CAAC;gBACjD,GAAG,CAAC,IAAI,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC;YAClI,CAAC;QACH,CAAC;IACH,CAAC;IAED,+EAA+E;IAC/E,2EAA2E;IAC3E,0BAA0B;IAC1B,IAAI,IAAI,IAAI,QAAQ,CAAC,IAAI,GAAG,CAAC,EAAE,CAAC;QAC9B,MAAM,SAAS,GAAG,IAAI,GAAG,EAAU,CAAC;QACpC,MAAM,QAAQ,GAAG,IAAI,GAAG,EAAU,CAAC;QACnC,KAAK,MAAM,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;YACjC,IAAI,IAAI,CAAC,IAAI,KAAK,iBAAiB,EAAE,CAAC;gBACpC,MAAM,EAAE,GAAG,UAAU,CAAC,IAAI,EAAE,UAAU,CAAC,CAAC;gBACxC,IAAI,CAAC,EAAE;oBAAE,SAAS;gBAClB,IAAI,MAAM,GAAkB,IAAI,CAAC;gBACjC,IAAI,EAAE,CAAC,IAAI,KAAK,YAAY;oBAAE,MAAM,GAAG,EAAE,CAAC,IAAI,CAAC;qBAC1C,IAAI,EAAE,CAAC,IAAI,KAAK,mBAAmB,EAAE,CAAC;oBACzC,MAAM,GAAG,GAAG,UAAU,CAAC,EAAE,EAAE,QAAQ,CAAC,CAAC;oBACrC,IAAI,GAAG,IAAI,GAAG,CAAC,IAAI,KAAK,YAAY;wBAAE,MAAM,GAAG,GAAG,CAAC,IAAI,CAAC,CAAC,WAAW;gBACtE,CAAC;gBACD,IAAI,MAAM,IAAI,QAAQ,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC;oBAC7D,SAAS,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;oBACtB,GAAG,CAAC,IAAI,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,CAAC,GAAG,CAAC,MAAM,CAAE,EAAE,UAAU,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,UAAU,EAAE,GAAG,EAAE,CAAC,CAAC;gBAClI,CAAC;YACH,CAAC;iBAAM,IAAI,IAAI,CAAC,IAAI,KAAK,mBAAmB,EAAE,CAAC;gBAC7C,MAAM,GAAG,GAAG,UAAU,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;gBACvC,IAAI,GAAG,IAAI,GAAG,CAAC,IAAI,KAAK,YAAY,IAAI,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC;oBAC1F,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;oBACvB,GAAG,CAAC,IAAI,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAE,EAAE,UAAU,EAAE,IAAI,EAAE,QAAQ,EAAE,GAAG,CAAC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package/build/src/index/indexer.js

@@ -1,11 +1,18 @@
 import { getOrCreateIndex, getActiveIndexId } from "./manager.js";
 import { scanFiles } from "./scanner.js";
-import { indexFile } from "./fts.js";
+import { indexFile, deleteFileFromIndex } from "./fts.js";
 export function buildIndex(db, scope) {
     const row = getOrCreateIndex(db, scope);
     const indexId = row.id;
     const files = scanFiles(scope.repoRoot);
     const knownFiles = new Set(files.map((f) => f.path));
+    const stored = db
+        .prepare("SELECT path FROM files WHERE index_id = ? AND deleted = 0")
+        .all(indexId);
+    for (const row of stored) {
+        if (!knownFiles.has(row.path))
+            deleteFileFromIndex(db, indexId, row.path);
+    }
     let indexedFiles = 0;
     let totalChunks = 0;
     let skipped = 0;

package/build/src/index/indexer.js.map

@@ -1 +1 @@
-{"version":3,"file":"indexer.js","sourceRoot":"","sources":["../../../src/index/indexer.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;AAClE,OAAO,EAAE,SAAS,EAAoB,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAE,SAAS,EAAE,MAAM,UAAU,CAAC;AAiBrC,MAAM,UAAU,UAAU,CAAC,EAAqB,EAAE,KAAe;IAC/D,MAAM,GAAG,GAAG,gBAAgB,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC;IACxC,MAAM,OAAO,GAAG,GAAG,CAAC,EAAE,CAAC;IACvB,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;IACxC,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;IACrD,IAAI,YAAY,GAAG,CAAC,CAAC;IACrB,IAAI,WAAW,GAAG,CAAC,CAAC;IACpB,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,KAAK,MAAM,CAAC,IAAI,KAAK,EAAE,CAAC;QACtB,IAAI,CAAC;YACH,MAAM,CAAC,GAAG,SAAS,CAAC,EAAE,EAAE,OAAO,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC,EAAE,UAAU,CAAC,CAAC;YAChE,YAAY,EAAE,CAAC;YACf,WAAW,IAAI,CAAC,CAAC,UAAU,CAAC;QAC9B,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,EAAE,CAAC;QACZ,CAAC;IACH,CAAC;IACD,OAAO,EAAE,OAAO,EAAE,YAAY,EAAE,WAAW,EAAE,OAAO,EAAE,CAAC;AACzD,CAAC;AAED,8DAA8D;AAC9D,MAAM,UAAU,WAAW,CAAC,EAAqB;IAC/C,MAAM,EAAE,GAAG,gBAAgB,EAAE,CAAC;IAC9B,IAAI,CAAC,EAAE;QAAE,MAAM,IAAI,KAAK,CAAC,6DAA6D,CAAC,CAAC;IACxF,KAAK,EAAE,CAAC;IACR,OAAO,EAAE,CAAC;AACZ,CAAC"}
+{"version":3,"file":"indexer.js","sourceRoot":"","sources":["../../../src/index/indexer.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;AAClE,OAAO,EAAE,SAAS,EAAoB,MAAM,cAAc,CAAC;AAC3D,OAAO,EAAE,SAAS,EAAE,mBAAmB,EAAE,MAAM,UAAU,CAAC;AAiB1D,MAAM,UAAU,UAAU,CAAC,EAAqB,EAAE,KAAe;IAC/D,MAAM,GAAG,GAAG,gBAAgB,CAAC,EAAE,EAAE,KAAK,CAAC,CAAC;IACxC,MAAM,OAAO,GAAG,GAAG,CAAC,EAAE,CAAC;IACvB,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;IACxC,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;IACrD,MAAM,MAAM,GAAG,EAAE;SACd,OAAO,CAAC,2DAA2D,CAAC;SACpE,GAAG,CAAC,OAAO,CAAuB,CAAC;IACtC,KAAK,MAAM,GAAG,IAAI,MAAM,EAAE,CAAC;QACzB,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC;YAAE,mBAAmB,CAAC,EAAE,EAAE,OAAO,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC;IAC5E,CAAC;IACD,IAAI,YAAY,GAAG,CAAC,CAAC;IACrB,IAAI,WAAW,GAAG,CAAC,CAAC;IACpB,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,KAAK,MAAM,CAAC,IAAI,KAAK,EAAE,CAAC;QACtB,IAAI,CAAC;YACH,MAAM,CAAC,GAAG,SAAS,CAAC,EAAE,EAAE,OAAO,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC,EAAE,UAAU,CAAC,CAAC;YAChE,YAAY,EAAE,CAAC;YACf,WAAW,IAAI,CAAC,CAAC,UAAU,CAAC;QAC9B,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,EAAE,CAAC;QACZ,CAAC;IACH,CAAC;IACD,OAAO,EAAE,OAAO,EAAE,YAAY,EAAE,WAAW,EAAE,OAAO,EAAE,CAAC;AACzD,CAAC;AAED,8DAA8D;AAC9D,MAAM,UAAU,WAAW,CAAC,EAAqB;IAC/C,MAAM,EAAE,GAAG,gBAAgB,EAAE,CAAC;IAC9B,IAAI,CAAC,EAAE;QAAE,MAAM,IAAI,KAAK,CAAC,6DAA6D,CAAC,CAAC;IACxF,KAAK,EAAE,CAAC;IACR,OAAO,EAAE,CAAC;AACZ,CAAC"}

package/build/src/index/queue.js

@@ -13,7 +13,16 @@ import { randomUUID } from "node:crypto";
 const state = { tail: Promise.resolve(), active: false };
 /** Enqueue a write task; runs after all prior writes complete. */
 export function enqueue(task) {
-    const run = state.tail.then(task, task);
+    const runTask = async () => {
+        state.active = true;
+        try {
+            return await task();
+        }
+        finally {
+            state.active = false;
+        }
+    };
+    const run = state.tail.then(runTask, runTask);
     state.tail = run.catch(() => { });
     return run;
 }

package/build/src/index/queue.js.map

@@ -1 +1 @@
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+{"version":3,"file":"queue.js","sourceRoot":"","sources":["../../../src/index/queue.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AASzC,MAAM,KAAK,GAAe,EAAE,IAAI,EAAE,OAAO,CAAC,OAAO,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;AAErE,kEAAkE;AAClE,MAAM,UAAU,OAAO,CAAI,IAAa;IACtC,MAAM,OAAO,GAAG,KAAK,IAAI,EAAE;QACzB,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC;QACpB,IAAI,CAAC;YACH,OAAO,MAAM,IAAI,EAAE,CAAC;QACtB,CAAC;gBAAS,CAAC;YACT,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC;QACvB,CAAC;IACH,CAAC,CAAC;IACF,MAAM,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,OAAO,CAAe,CAAC;IAC5D,KAAK,CAAC,IAAI,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,EAAE,GAAqC,CAAC,CAAC,CAAC;IACpE,OAAO,GAAG,CAAC;AACb,CAAC;AAED,8CAA8C;AAC9C,MAAM,UAAU,aAAa;IAC3B,OAAO,KAAK,CAAC,MAAM,CAAC;AACtB,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,iBAAiB,CAAC,EAAqB,EAAE,OAAe,EAAE,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,QAAQ,EAAE,EAAE,OAAO,GAAG,KAAK;IACvH,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IACvB,MAAM,QAAQ,GAAG,EAAE,CAAC,OAAO,CAAC,8DAA8D,CAAC,CAAC,GAAG,CAAC,OAAO,CAClD,CAAC;IACtD,IAAI,QAAQ,IAAI,QAAQ,CAAC,UAAU,GAAG,GAAG,IAAI,QAAQ,CAAC,KAAK,KAAK,KAAK,EAAE,CAAC;QACtE,OAAO,KAAK,CAAC,CAAC,2BAA2B;IAC3C,CAAC;IACD,EAAE,CAAC,OAAO,CACR,yEAAyE;QACvE,8FAA8F,CACjG,CAAC,GAAG,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,GAAG,OAAO,CAAC,CAAC;IACrC,OAAO,IAAI,CAAC;AACd,CAAC;AAED,wDAAwD;AACxD,MAAM,UAAU,iBAAiB,CAAC,EAAqB,EAAE,OAAe,EAAE,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,QAAQ,EAAE;IACtG,EAAE,CAAC,OAAO,CAAC,0DAA0D,CAAC,CAAC,GAAG,CAAC,OAAO,EAAE,KAAK,CAAC,CAAC;AAC7F,CAAC;AAED,kEAAkE;AAClE,MAAM,UAAU,UAAU;IACxB,OAAO,MAAM,GAAG,UAAU,EAAE,CAAC;AAC/B,CAAC"}

package/build/src/index/ttl.js

@@ -38,6 +38,18 @@ export function computeExpiry(row, _now = Date.now()) {
     }
     return row.last_accessed_at + RETENTION.inactiveBranchDays * 86400_000;
 }
+export function deleteIndexRows(db, indexId) {
+    const tx = db.transaction(() => {
+        db.prepare("DELETE FROM chunks_fts WHERE index_id = ?").run(indexId);
+        db.prepare("DELETE FROM chunks WHERE index_id = ?").run(indexId);
+        db.prepare("DELETE FROM symbols WHERE index_id = ?").run(indexId);
+        db.prepare("DELETE FROM edges WHERE index_id = ?").run(indexId);
+        db.prepare("DELETE FROM files WHERE index_id = ?").run(indexId);
+        db.prepare("DELETE FROM index_locks WHERE index_id = ?").run(indexId);
+        db.prepare("DELETE FROM indexes WHERE id = ?").run(indexId);
+    });
+    tx();
+}
 /** Prune expired inactive indexes. Respects never-delete guards. */
 export function pruneIndexes(db, now = Date.now()) {
     const active = getActiveIndexId();
@@ -69,17 +81,7 @@ export function pruneIndexes(db, now = Date.now()) {
             skipped++;
             continue;
         }
-        // Delete scoped rows across all tables, transactionally.
-        const tx = db.transaction(() => {
-            db.prepare("DELETE FROM chunks_fts WHERE index_id = ?").run(r.id);
-            db.prepare("DELETE FROM chunks WHERE index_id = ?").run(r.id);
-            db.prepare("DELETE FROM symbols WHERE index_id = ?").run(r.id);
-            db.prepare("DELETE FROM edges WHERE index_id = ?").run(r.id);
-            db.prepare("DELETE FROM files WHERE index_id = ?").run(r.id);
-            db.prepare("DELETE FROM index_locks WHERE index_id = ?").run(r.id);
-            db.prepare("DELETE FROM indexes WHERE id = ?").run(r.id);
-        });
-        tx();
+        deleteIndexRows(db, r.id);
         deleted.push(r.id);
     }
     return { deletedIndexes: deleted, skipped, bytesFreed: 0 };

package/build/src/index/ttl.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ttl.js","sourceRoot":"","sources":["../../../src/index/ttl.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,gBAAgB,EAAE,MAAM,cAAc,CAAC;AAEhD;;;;;;;;;;;;;;;GAeG;AAEH,MAAM,CAAC,MAAM,SAAS,GAAG;IACvB,kBAAkB,EAAE,EAAE;IACtB,YAAY,EAAE,CAAC;IACf,aAAa,EAAE,EAAE;IACjB,OAAO,EAAE,QAAQ;CAClB,CAAC;AAQF,yEAAyE;AACzE,MAAM,UAAU,aAAa,CAAC,GAQ7B,EAAE,IAAI,GAAG,IAAI,CAAC,GAAG,EAAE;IAClB,IAAI,GAAG,CAAC,MAAM;QAAE,OAAO,IAAI,CAAC;IAC5B,wEAAwE;IACxE,mFAAmF;IACnF,kFAAkF;IAClF,+EAA+E;IAC/E,IAAI,GAAG,CAAC,UAAU,KAAK,IAAI;QAAE,OAAO,GAAG,CAAC,UAAU,CAAC;IACnD,IAAI,GAAG,CAAC,WAAW,KAAK,UAAU;QAAE,OAAO,GAAG,CAAC,gBAAgB,GAAG,SAAS,CAAC,YAAY,GAAG,SAAS,CAAC;IACrG,IAAI,GAAG,CAAC,aAAa,IAAI,GAAG,CAAC,aAAa,KAAM,GAA8B,CAAC,SAAS,EAAE,CAAC;QACzF,OAAO,GAAG,CAAC,gBAAgB,GAAG,SAAS,CAAC,aAAa,GAAG,QAAQ,CAAC;IACnE,CAAC;IACD,OAAO,GAAG,CAAC,gBAAgB,GAAG,SAAS,CAAC,kBAAkB,GAAG,SAAS,CAAC;AACzE,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,EAAqB,EAAE,OAAe;IACpE,MAAM,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,GAAG,EAAE;QAC7B,EAAE,CAAC,OAAO,CAAC,2CAA2C,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QACrE,EAAE,CAAC,OAAO,CAAC,uCAAuC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QACjE,EAAE,CAAC,OAAO,CAAC,wCAAwC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAClE,EAAE,CAAC,OAAO,CAAC,sCAAsC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAChE,EAAE,CAAC,OAAO,CAAC,sCAAsC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QAChE,EAAE,CAAC,OAAO,CAAC,4CAA4C,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;QACtE,EAAE,CAAC,OAAO,CAAC,kCAAkC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IAC9D,CAAC,CAAC,CAAC;IACH,EAAE,EAAE,CAAC;AACP,CAAC;AAED,oEAAoE;AACpE,MAAM,UAAU,YAAY,CAAC,EAAqB,EAAE,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE;IAClE,MAAM,MAAM,GAAG,gBAAgB,EAAE,CAAC;IAClC,2EAA2E;IAC3E,MAAM,IAAI,GAAG,EAAE,CAAC,OAAO,CACrB;;;;;OAKG,CACJ,CAAC,GAAG,CAAC,GAAG,CAGN,CAAC;IAEJ,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,IAAI,OAAO,GAAG,CAAC,CAAC;IAEhB,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE,CAAC;QACrB,uBAAuB;QACvB,IAAI,CAAC,CAAC,EAAE,KAAK,MAAM,EAAE,CAAC;YAAC,OAAO,EAAE,CAAC;YAAC,SAAS;QAAC,CAAC;QAC7C,IAAI,CAAC,CAAC,MAAM,EAAE,CAAC;YAAC,OAAO,EAAE,CAAC;YAAC,SAAS;QAAC,CAAC;QACtC,IAAI,GAAG,GAAG,CAAC,CAAC,IAAI,GAAG,SAAS,CAAC,OAAO,EAAE,CAAC;YAAC,OAAO,EAAE,CAAC;YAAC,SAAS;QAAC,CAAC;QAC9D,MAAM,MAAM,GAAG,CAAC,CAAC,UAAU,IAAI,aAAa,CAAC,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,QAAQ,EAAE,EAAE,EAAE,gBAAgB,EAAE,CAAC,CAAC,IAAI,EAAE,UAAU,EAAE,CAAC,CAAC,UAAU,EAAE,aAAa,EAAE,CAAC,CAAC,KAAK,EAAE,EAAE,GAAG,CAAC,CAAC;QAC3M,IAAI,MAAM,KAAK,IAAI,IAAI,GAAG,GAAG,MAAM,EAAE,CAAC;YAAC,OAAO,EAAE,CAAC;YAAC,SAAS;QAAC,CAAC;QAE7D,eAAe,CAAC,EAAE,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC;QAC1B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;IACrB,CAAC;IAED,OAAO,EAAE,cAAc,EAAE,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,CAAC,EAAE,CAAC;AAC7D,CAAC"}

package/build/src/installer/agents.js

@@ -8,19 +8,31 @@ const CODEX_START = `# codelens routing start (managed by \`codelens install\`)`
 const CODEX_END = `# codelens routing end`;
 const INSTRUCTIONS_BODY = `# CodeLens routing
 
-For codebase discovery, use the codelens MCP tools (\`cl_current\`,
-\`cl_refresh\`, \`cl_search\`, \`cl_related\`, \`cl_expand\`, \`cl_save\`,
-\`cl_load\`) BEFORE \`grep\`/\`find\`/bulk-\`read\`. Use \`cl_expand\` or a raw
-read only for editing/verifying exact files. Results are scoped to the current
-branch index; call \`cl_current\` after a \`git checkout\`. See \`docs/routing.md\`.
-Remove with: \`codelens uninstall\`.`;
+Prefer the codelens MCP tools (\`cl_search\`, \`cl_related\`, \`cl_expand\`,
+\`cl_map\`, \`cl_save\`, \`cl_load\`) for code discovery — they keep context lean
+and are branch-scoped.
+
+Use codelens when:
+- you don't know the exact name/string (semantic or conceptual search)
+- you need relationships (importers, tests, callers) or a file outline
+- the repo is large or unfamiliar, or you'd otherwise grep + read many files
+
+Raw \`grep\`/\`find\`/\`read\` is fine when:
+- you already know an exact string/symbol/path
+- you're reading or editing a single known file
+- the repo is tiny or familiar
+
+Always use \`cl_expand\` or a raw read for the exact file you're about to edit.
+Results are scoped to the current branch; call \`cl_current\` after a
+\`git checkout\`. See \`docs/routing.md\`. Remove with: \`codelens uninstall\`.`;
 // ── JSON helpers ──────────────────────────────────────────────
 function readJson(path) {
     try {
         return JSON.parse(readFileSync(path, "utf-8"));
     }
-    catch {
-        return {};
+    catch (err) {
+        const msg = err instanceof Error ? err.message : String(err);
+        throw new Error(`Could not parse JSON config at ${path}: ${msg}`);
     }
 }
 function writeJson(path, obj) {
@@ -436,5 +448,5 @@ export function printConfig(hostId, serverCommand, loc = "global") {
     const cfg = { [key]: { [h.entryKey]: entry } };
     return `${h.configPath(loc)}:\n${JSON.stringify(cfg, null, 2)}`;
 }
-export { VERSION, writeInstructions, removeInstructions, INSTRUCTIONS_START, INSTRUCTIONS_END };
+export { VERSION, writeInstructions, removeInstructions, INSTRUCTIONS_START, INSTRUCTIONS_END, readJson };
 //# sourceMappingURL=agents.js.map