@fnndsc/salsa 4.2.1 → 4.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/connect/index.js +1 -1
- package/dist/connect/index.js.map +1 -1
- package/dist/dag/feedData.d.ts +3 -3
- package/dist/dag/feedData.js +13 -13
- package/dist/dag/feedData.js.map +1 -1
- package/dist/dicom/dictionary.d.ts +1 -1
- package/dist/dicom/dictionary.js +2 -2
- package/dist/dicom/dictionary.js.map +1 -1
- package/dist/dicom/series.js +16 -16
- package/dist/dicom/series.js.map +1 -1
- package/dist/dicom/tags.js +5 -5
- package/dist/dicom/tags.js.map +1 -1
- package/dist/files/fileLookup.d.ts +1 -1
- package/dist/files/fileLookup.js +2 -2
- package/dist/files/fileLookup.js.map +1 -1
- package/dist/files/index.js +7 -7
- package/dist/files/index.js.map +1 -1
- package/dist/files/pacs_content.js +2 -2
- package/dist/files/pacs_content.js.map +1 -1
- package/dist/files/regular_content.js +3 -3
- package/dist/files/regular_content.js.map +1 -1
- package/dist/index.d.ts +1 -1
- package/dist/index.js +4 -4
- package/dist/index.js.map +1 -1
- package/dist/pacs/anonymise.d.ts +4 -4
- package/dist/pacs/anonymise.js +23 -23
- package/dist/pacs/anonymise.js.map +1 -1
- package/dist/pipelines/manifest.d.ts +13 -0
- package/dist/pipelines/manifest.js +19 -1
- package/dist/pipelines/manifest.js.map +1 -1
- package/dist/plugins/index.d.ts +1 -1
- package/dist/plugins/index.js +2 -2
- package/dist/plugins/index.js.map +1 -1
- package/dist/vfs/dispatcher.d.ts +3 -0
- package/dist/vfs/dispatcher.js +3 -1
- package/dist/vfs/dispatcher.js.map +1 -1
- package/dist/vfs/providers/etc.js +2 -2
- package/dist/vfs/providers/etc.js.map +1 -1
- package/dist/vfs/providers/native.d.ts +1 -1
- package/dist/vfs/providers/native.js +12 -12
- package/dist/vfs/providers/native.js.map +1 -1
- package/dist/vfs/providers/pacs.d.ts +6 -2
- package/dist/vfs/providers/pacs.js +10 -6
- package/dist/vfs/providers/pacs.js.map +1 -1
- package/dist/vfs/providers/proc.js +16 -16
- package/dist/vfs/providers/proc.js.map +1 -1
- package/dist/vfs/providers/procTags.js +9 -9
- package/dist/vfs/providers/procTags.js.map +1 -1
- package/dist/vfs/providers/share.js +2 -2
- package/dist/vfs/providers/share.js.map +1 -1
- package/package.json +3 -3
package/dist/connect/index.js
CHANGED
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@@ -33,6 +33,6 @@ async function logout_do() {
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* @returns The operation's result.
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*/
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async function elevation_do(credentials, operation) {
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-
return await cumin_1.chrisConnection.
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return await cumin_1.chrisConnection.elevation_runWithCredentials(credentials, operation);
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}
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//# sourceMappingURL=index.js.map
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/connect/index.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;AA0BH,gCAGC;AAKD,8BAEC;AASD,oCAKC;AAhDD,yCAGuB;AAevB;;;;;GAKG;AACI,KAAK,UAAU,UAAU,CAAC,OAAuB;IACtD,MAAM,KAAK,GAAkB,MAAM,uBAAe,CAAC,kBAAkB,CAAC,OAAO,CAAC,CAAC;IAC/E,OAAO,KAAK,KAAK,IAAI,CAAC;AACxB,CAAC;AAED;;GAEG;AACI,KAAK,UAAU,SAAS;IAC7B,MAAM,uBAAe,CAAC,iBAAiB,EAAE,CAAC;AAC5C,CAAC;AAED;;;;;;GAMG;AACI,KAAK,UAAU,YAAY,CAChC,WAAiC,EACjC,SAA2B;IAE3B,OAAO,MAAM,uBAAe,CAAC,
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1
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/connect/index.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;AA0BH,gCAGC;AAKD,8BAEC;AASD,oCAKC;AAhDD,yCAGuB;AAevB;;;;;GAKG;AACI,KAAK,UAAU,UAAU,CAAC,OAAuB;IACtD,MAAM,KAAK,GAAkB,MAAM,uBAAe,CAAC,kBAAkB,CAAC,OAAO,CAAC,CAAC;IAC/E,OAAO,KAAK,KAAK,IAAI,CAAC;AACxB,CAAC;AAED;;GAEG;AACI,KAAK,UAAU,SAAS;IAC7B,MAAM,uBAAe,CAAC,iBAAiB,EAAE,CAAC;AAC5C,CAAC;AAED;;;;;;GAMG;AACI,KAAK,UAAU,YAAY,CAChC,WAAiC,EACjC,SAA2B;IAE3B,OAAO,MAAM,uBAAe,CAAC,4BAA4B,CAAC,WAAW,EAAE,SAAS,CAAC,CAAC;AACpF,CAAC"}
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package/dist/dag/feedData.d.ts
CHANGED
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@@ -77,21 +77,21 @@ export interface DataFactsIO {
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* @param self - The feed.
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* @returns The source feed, or undefined.
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*/
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export declare function
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export declare function sourceFeed_parse(path: string, self: number): number | undefined;
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/**
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* The reader the daemon uses, given the provider's output-path reader.
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*
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* @param outputPath - Reads a job's output folder.
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* @returns The IO.
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*/
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export declare function
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export declare function dataFactsIO_build(outputPath: (instanceID: number) => Promise<string | null>): DataFactsIO;
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/**
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* The format a file's name says, or null when its name says nothing.
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*
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* @param name - The file's name.
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* @returns The format, or null.
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*/
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export declare function
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export declare function dataFormat_deriveFromName(name: string): Exclude<ProcFeedDataFacts['format'], 'other' | 'unknown'> | null;
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/**
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* Reads what one feed's data is.
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*
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package/dist/dag/feedData.js
CHANGED
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@@ -2,9 +2,9 @@
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.DATA_FACTS_ROUND_PAUSE_MS = exports.DATA_FACTS_FEED_MS = exports.DATA_FACTS_IN_FLIGHT = exports.DATA_FACTS_READER = void 0;
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exports.procDataFacts_settled = procDataFacts_settled;
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exports.
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exports.
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exports.
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exports.sourceFeed_parse = sourceFeed_parse;
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exports.dataFactsIO_build = dataFactsIO_build;
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exports.dataFormat_deriveFromName = dataFormat_deriveFromName;
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exports.feedDataFacts_read = feedDataFacts_read;
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exports.procDataFacts_sweep = procDataFacts_sweep;
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exports.procDataFacts_feed = procDataFacts_feed;
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@@ -84,7 +84,7 @@ function procDataFacts_settled() {
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* @param self - The feed.
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* @returns The source feed, or undefined.
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*/
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function
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function sourceFeed_parse(path, self) {
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const found = path.match(/(?:^|\/)feeds\/feed_(\d+)(?:\/|$)/);
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const id = found === null ? Number.NaN : Number(found[1]);
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return Number.isInteger(id) && id !== self ? id : undefined;
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@@ -95,7 +95,7 @@ function sourceFeed_of(path, self) {
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* @param outputPath - Reads a job's output folder.
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* @returns The IO.
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*/
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-
function
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function dataFactsIO_build(outputPath) {
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// The dispatcher and the DICOM reader are reached at call time: the /proc
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// provider that hands this reader in is itself one of the dispatcher's
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// providers, and a module-level import would close that circle.
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@@ -112,7 +112,7 @@ function dataFactsIO_of(outputPath) {
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},
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series: async (path) => {
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try {
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return await (0, cumin_1.
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return await (0, cumin_1.pacsSeriesFacts_fetch)(path);
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}
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catch {
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return null;
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@@ -136,7 +136,7 @@ function dataFactsIO_of(outputPath) {
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*/
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async function cfsFirstPage_list(path) {
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const { files_list, files_listOutcome } = await import('../files/index.js');
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const {
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const { chrisRow_convertToItem } = await import('../vfs/providers/native.js');
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const bounded = { limit: DATA_LIST_LIMIT, offset: 0 };
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const kinds = ['dirs', 'files', 'links'];
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let pages;
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@@ -150,7 +150,7 @@ async function cfsFirstPage_list(path) {
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pages.forEach((page, index) => {
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const type = kinds[index] === 'dirs' ? 'dir' : kinds[index] === 'files' ? 'file' : 'link';
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for (const row of page?.tableData ?? [])
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items.push(
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items.push(chrisRow_convertToItem(row, type));
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});
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if (items.length > 0)
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return items;
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@@ -163,7 +163,7 @@ async function cfsFirstPage_list(path) {
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* @param name - The file's name.
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* @returns The format, or null.
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*/
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function
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function dataFormat_deriveFromName(name) {
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const lower = name.toLowerCase();
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if (/\.(dcm|dicom|ima)$/.test(lower))
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return 'dicom';
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@@ -204,7 +204,7 @@ async function dataFile_find(folder, io) {
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return { reason: `its data is in ${at}, which this identity may not read`, path: at };
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const data = items.filter(isData).sort(byName);
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// A file whose name says its format, plain or linked.
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const named = data.find((item) =>
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const named = data.find((item) => dataFormat_deriveFromName(item.name) !== null);
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if (named !== undefined)
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return { files: [{ path: pathOf(at, named), name: named.name, linked: named.type === 'link' }] };
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// Plain files whose names say nothing (DICOM named by UID, no extension): a few are tried.
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@@ -261,14 +261,14 @@ async function feedDataFacts_read(feedID, io, cache = (0, cumin_1.procCache_get)
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return null;
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// Where the data lies says whose work it began from.
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const lineage = (path) => {
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const source = path === undefined ? undefined :
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const source = path === undefined ? undefined : sourceFeed_parse(path, feedID);
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return source === undefined ? {} : { sourceFeed: source };
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};
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if ('reason' in found)
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return { format: 'unknown', reason: found.reason, ...lineage(found.path) };
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const first = found.files[0];
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const from = lineage(first.path);
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const named =
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const named = dataFormat_deriveFromName(first.name);
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if (named !== null && named !== 'dicom')
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return { format: named, ...from };
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// A series in CUBE's PACS store is described by CUBE's own record: no file read.
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@@ -397,6 +397,6 @@ async function procDataFacts_feed(feedID, io, cache = (0, cumin_1.procCache_get)
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}
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/** Whether a feed's facts were written by this reader: none, or an older reader's, are read again. */
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function dataFacts_current(cache, feedID) {
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return cache.
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return cache.dataFacts_read(feedID)?.reader === exports.DATA_FACTS_READER;
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}
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//# sourceMappingURL=feedData.js.map
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package/dist/dag/feedData.js.map
CHANGED
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@@ -1 +1 @@
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1
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+
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|
@@ -22,7 +22,7 @@ export declare const DICOM_TAG_GROUPS: readonly DicomTagGroup[];
|
|
|
22
22
|
* @param name - The dictionary name, when the tag has one.
|
|
23
23
|
* @returns The listing group.
|
|
24
24
|
*/
|
|
25
|
-
export declare function
|
|
25
|
+
export declare function tagGroup_derive(groupNumber: number, name: string | undefined): DicomTagGroup;
|
|
26
26
|
/**
|
|
27
27
|
* Tags that identify a person or an institution. Flagged on the model so a
|
|
28
28
|
* surface can redact; never stripped by the kernel.
|
package/dist/dicom/dictionary.js
CHANGED
|
@@ -14,7 +14,7 @@
|
|
|
14
14
|
*/
|
|
15
15
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
16
16
|
exports.TRANSFER_SYNTAX_NAMES = exports.DICOM_PHI_TAGS = exports.DICOM_TAG_GROUPS = void 0;
|
|
17
|
-
exports.
|
|
17
|
+
exports.tagGroup_derive = tagGroup_derive;
|
|
18
18
|
exports.tagValue_decode = tagValue_decode;
|
|
19
19
|
/** The groups in the order a listing shows them. */
|
|
20
20
|
exports.DICOM_TAG_GROUPS = [
|
|
@@ -101,7 +101,7 @@ const GROUP_BY_NUMBER = {
|
|
|
101
101
|
* @param name - The dictionary name, when the tag has one.
|
|
102
102
|
* @returns The listing group.
|
|
103
103
|
*/
|
|
104
|
-
function
|
|
104
|
+
function tagGroup_derive(groupNumber, name) {
|
|
105
105
|
if (groupNumber % 2 === 1)
|
|
106
106
|
return 'private';
|
|
107
107
|
if (name !== undefined && GROUP_BY_NAME[name] !== undefined)
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"dictionary.js","sourceRoot":"","sources":["../../src/dicom/dictionary.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;;GAYG;;;AAqGH,
|
|
1
|
+
{"version":3,"file":"dictionary.js","sourceRoot":"","sources":["../../src/dicom/dictionary.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;;GAYG;;;AAqGH,0CAIC;AAmHD,0CAGC;AAlND,oDAAoD;AACvC,QAAA,gBAAgB,GAA6B;IACxD,SAAS;IACT,OAAO;IACP,QAAQ;IACR,OAAO;IACP,WAAW;IACX,MAAM;IACN,SAAS;IACT,OAAO;CACR,CAAC;AAEF;;;;GAIG;AACH,MAAM,aAAa,GAA4C;IAC7D,oCAAoC;IACpC,QAAQ,EAAE,QAAQ;IAClB,UAAU,EAAE,QAAQ;IACpB,UAAU,EAAE,QAAQ;IACpB,iBAAiB,EAAE,QAAQ;IAC3B,gBAAgB,EAAE,QAAQ;IAC1B,YAAY,EAAE,QAAQ;IACtB,uBAAuB;IACvB,WAAW,EAAE,OAAO;IACpB,cAAc,EAAE,OAAO;IACvB,SAAS,EAAE,OAAO;IAClB,WAAW,EAAE,OAAO;IACpB,WAAW,EAAE,OAAO;IACpB,eAAe,EAAE,OAAO;IACxB,eAAe,EAAE,OAAO;IACxB,iBAAiB,EAAE,OAAO;IAC1B,kBAAkB;IAClB,YAAY,EAAE,WAAW;IACzB,qBAAqB,EAAE,WAAW;IAClC,WAAW,EAAE,WAAW;IACxB,eAAe,EAAE,WAAW;IAC5B,kBAAkB,EAAE,WAAW;IAC/B,2BAA2B,EAAE,WAAW;IACxC,kBAAkB;IAClB,kBAAkB,EAAE,WAAW;IAC/B,gBAAgB,EAAE,WAAW;IAC7B,qBAAqB,EAAE,WAAW;IAClC,cAAc;IACd,gBAAgB,EAAE,OAAO;IACzB,OAAO,EAAE,OAAO;IAChB,eAAe;IACf,iBAAiB,EAAE,QAAQ;IAC3B,YAAY,EAAE,QAAQ;IACtB,mBAAmB,EAAE,QAAQ;IAC7B,0BAA0B,EAAE,QAAQ;IACpC,eAAe,EAAE,QAAQ;IACzB,cAAc;IACd,cAAc,EAAE,OAAO;IACvB,oBAAoB,EAAE,OAAO;IAC7B,uBAAuB,EAAE,OAAO;IAChC,aAAa,EAAE,OAAO;IACtB,aAAa,EAAE,OAAO;IACtB,cAAc,EAAE,OAAO;CACxB,CAAC;AAEF,0EAA0E;AAC1E,MAAM,eAAe,GAA4C;IAC/D,MAAM,EAAE,MAAM;IACd,MAAM,EAAE,OAAO;IACf,MAAM,EAAE,SAAS;IACjB,MAAM,EAAE,QAAQ;IAChB,MAAM,EAAE,OAAO;IACf,MAAM,EAAE,OAAO;IACf,MAAM,EAAE,OAAO;IACf,MAAM,EAAE,SAAS;IACjB,MAAM,EAAE,OAAO;IACf,MAAM,EAAE,QAAQ;IAChB,MAAM,EAAE,OAAO;IACf,MAAM,EAAE,QAAQ;IAChB,MAAM,EAAE,OAAO;IACf,MAAM,EAAE,OAAO;CAChB,CAAC;AAEF;;;;;;GAMG;AACH,SAAgB,eAAe,CAAC,WAAmB,EAAE,IAAwB;IAC3E,IAAI,WAAW,GAAG,CAAC,KAAK,CAAC;QAAE,OAAO,SAAS,CAAC;IAC5C,IAAI,IAAI,KAAK,SAAS,IAAI,aAAa,CAAC,IAAI,CAAC,KAAK,SAAS;QAAE,OAAO,aAAa,CAAC,IAAI,CAAC,CAAC;IACxF,OAAO,eAAe,CAAC,WAAW,CAAC,IAAI,OAAO,CAAC;AACjD,CAAC;AAED;;;GAGG;AACU,QAAA,cAAc,GAAwB,IAAI,GAAG,CAAS;IACjE,aAAa;IACb,WAAW;IACX,kBAAkB;IAClB,kBAAkB;IAClB,gBAAgB;IAChB,yBAAyB;IACzB,iBAAiB;IACjB,mBAAmB;IACnB,wBAAwB;IACxB,iBAAiB;IACjB,oBAAoB;IACpB,wBAAwB;IACxB,yBAAyB;IACzB,eAAe;IACf,oBAAoB;IACpB,8BAA8B;IAC9B,iBAAiB;CAClB,CAAC,CAAC;AAEH,uDAAuD;AACvD,MAAM,cAAc,GAAqC;IACvD,EAAE,EAAE,oBAAoB;IACxB,EAAE,EAAE,qBAAqB;IACzB,EAAE,EAAE,8BAA8B;IAClC,EAAE,EAAE,kBAAkB;IACtB,EAAE,EAAE,YAAY;IAChB,EAAE,EAAE,sBAAsB;IAC1B,EAAE,EAAE,qBAAqB;IACzB,EAAE,EAAE,aAAa;IACjB,EAAE,EAAE,mBAAmB;IACvB,EAAE,EAAE,mBAAmB;IACvB,EAAE,EAAE,OAAO;IACX,EAAE,EAAE,mBAAmB;IACvB,GAAG,EAAE,cAAc;IACnB,QAAQ,EAAE,kBAAkB;IAC5B,MAAM,EAAE,SAAS;IACjB,MAAM,EAAE,SAAS;IACjB,EAAE,EAAE,oBAAoB;IACxB,EAAE,EAAE,sBAAsB;IAC1B,GAAG,EAAE,UAAU;CAChB,CAAC;AAEF,MAAM,iBAAiB,GAAqC;IAC1D,CAAC,EAAE,MAAM;IACT,CAAC,EAAE,QAAQ;IACX,CAAC,EAAE,OAAO;CACX,CAAC;AAEF,MAAM,sBAAsB,GAAqC;IAC/D,GAAG,EAAE,mBAAmB;IACxB,GAAG,EAAE,kBAAkB;IACvB,IAAI,EAAE,4BAA4B;IAClC,IAAI,EAAE,2BAA2B;IACjC,GAAG,EAAE,mBAAmB;IACxB,GAAG,EAAE,kBAAkB;IACvB,IAAI,EAAE,4BAA4B;IAClC,IAAI,EAAE,2BAA2B;CAClC,CAAC;AAEF,MAAM,iBAAiB,GAAqC;IAC1D,WAAW,EAAE,6BAA6B;IAC1C,WAAW,EAAE,6BAA6B;IAC1C,GAAG,EAAE,aAAa;IAClB,eAAe,EAAE,iBAAiB;IAClC,QAAQ,EAAE,kBAAkB;IAC5B,YAAY,EAAE,mBAAmB;IACjC,OAAO,EAAE,wBAAwB;IACjC,OAAO,EAAE,0BAA0B;CACpC,CAAC;AAEF,sFAAsF;AACzE,QAAA,qBAAqB,GAAqC;IACrE,mBAAmB,EAAE,2BAA2B;IAChD,qBAAqB,EAAE,2BAA2B;IAClD,wBAAwB,EAAE,oCAAoC;IAC9D,qBAAqB,EAAE,wBAAwB;IAC/C,wBAAwB,EAAE,uBAAuB;IACjD,wBAAwB,EAAE,wBAAwB;IAClD,wBAAwB,EAAE,eAAe;IACzC,wBAAwB,EAAE,mBAAmB;IAC7C,wBAAwB,EAAE,kBAAkB;IAC5C,wBAAwB,EAAE,uBAAuB;IACjD,wBAAwB,EAAE,oBAAoB;IAC9C,wBAAwB,EAAE,WAAW;IACrC,yBAAyB,EAAE,oCAAoC;IAC/D,yBAAyB,EAAE,yCAAyC;IACpE,yBAAyB,EAAE,2BAA2B;IACtD,qBAAqB,EAAE,cAAc;CACtC,CAAC;AAEF,gEAAgE;AAChE,MAAM,QAAQ,GAAoE;IAChF,QAAQ,EAAE,CAAC,KAAa,EAAsB,EAAE,CAAC,cAAc,CAAC,KAAK,CAAC;IACtE,UAAU,EAAE,CAAC,KAAa,EAAsB,EAAE,CAAC,iBAAiB,CAAC,KAAK,CAAC;IAC3E,eAAe,EAAE,CAAC,KAAa,EAAsB,EAAE,CAAC,sBAAsB,CAAC,KAAK,CAAC;IACrF,yBAAyB,EAAE,CAAC,KAAa,EAAsB,EAAE,CAAC,iBAAiB,CAAC,KAAK,CAAC;IAC1F,iBAAiB,EAAE,CAAC,KAAa,EAAsB,EAAE,CAAC,6BAAqB,CAAC,KAAK,CAAC;CACvF,CAAC;AAEF;;;;;;;;GAQG;AACH,SAAgB,eAAe,CAAC,IAAY,EAAE,KAAa;IACzD,MAAM,OAAO,GAAwD,QAAQ,CAAC,IAAI,CAAC,CAAC;IACpF,OAAO,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;AAC5D,CAAC"}
|
package/dist/dicom/series.js
CHANGED
|
@@ -168,18 +168,18 @@ async function dicomSeries_summarize(folder, options = {}, io = exports.dicomFol
|
|
|
168
168
|
if (!header.ok)
|
|
169
169
|
return (0, cumin_1.Err)();
|
|
170
170
|
const tags = header.value.tags;
|
|
171
|
-
const seriesInstanceUID =
|
|
171
|
+
const seriesInstanceUID = tagText_find(tags, 'SeriesInstanceUID');
|
|
172
172
|
const summary = {
|
|
173
173
|
path: folder,
|
|
174
174
|
...(seriesInstanceUID !== undefined ? { seriesInstanceUID } : {}),
|
|
175
|
-
...(
|
|
176
|
-
modality:
|
|
177
|
-
seriesDescription:
|
|
178
|
-
...(
|
|
175
|
+
...(tagText_find(tags, 'StudyInstanceUID') !== undefined ? { studyInstanceUID: tagText_find(tags, 'StudyInstanceUID') } : {}),
|
|
176
|
+
modality: tagText_find(tags, 'Modality') ?? 'OT',
|
|
177
|
+
seriesDescription: tagText_find(tags, 'SeriesDescription') ?? '',
|
|
178
|
+
...(tagNumber_find(tags, 'SeriesNumber') !== undefined ? { seriesNumber: tagNumber_find(tags, 'SeriesNumber') } : {}),
|
|
179
179
|
instances: files.length,
|
|
180
|
-
frames:
|
|
180
|
+
frames: tagNumber_find(tags, 'NumberOfFrames') ?? 1,
|
|
181
181
|
order: listed.value.order,
|
|
182
|
-
...(
|
|
182
|
+
...(geometry_extract(tags) !== undefined ? { geometry: geometry_extract(tags) } : {}),
|
|
183
183
|
...(header.value.transferSyntaxUID !== undefined
|
|
184
184
|
? {
|
|
185
185
|
transferSyntax: {
|
|
@@ -216,15 +216,15 @@ async function dicomSeries_summarize(folder, options = {}, io = exports.dicomFol
|
|
|
216
216
|
/**
|
|
217
217
|
* A tag's text, or nothing when absent or empty.
|
|
218
218
|
*/
|
|
219
|
-
function
|
|
219
|
+
function tagText_find(tags, name) {
|
|
220
220
|
const tag = (0, tags_js_1.dicomTag_find)(tags, name);
|
|
221
221
|
return tag === undefined || tag.value === '' ? undefined : tag.value;
|
|
222
222
|
}
|
|
223
223
|
/**
|
|
224
224
|
* A tag's first value as a number, or nothing when absent or not numeric.
|
|
225
225
|
*/
|
|
226
|
-
function
|
|
227
|
-
const text =
|
|
226
|
+
function tagNumber_find(tags, name) {
|
|
227
|
+
const text = tagText_find(tags, name);
|
|
228
228
|
if (text === undefined)
|
|
229
229
|
return undefined;
|
|
230
230
|
const parsed = Number(text.split('\\')[0]);
|
|
@@ -233,22 +233,22 @@ function tagNumber_of(tags, name) {
|
|
|
233
233
|
/**
|
|
234
234
|
* The voxel grid from a header, when it has one.
|
|
235
235
|
*/
|
|
236
|
-
function
|
|
237
|
-
const rows =
|
|
238
|
-
const columns =
|
|
236
|
+
function geometry_extract(tags) {
|
|
237
|
+
const rows = tagNumber_find(tags, 'Rows');
|
|
238
|
+
const columns = tagNumber_find(tags, 'Columns');
|
|
239
239
|
if (rows === undefined || columns === undefined)
|
|
240
240
|
return undefined;
|
|
241
241
|
const geometry = { rows, columns };
|
|
242
|
-
const spacing =
|
|
242
|
+
const spacing = tagText_find(tags, 'PixelSpacing');
|
|
243
243
|
if (spacing !== undefined) {
|
|
244
244
|
const parts = spacing.split('\\').map(Number);
|
|
245
245
|
if (parts.length === 2 && parts.every(Number.isFinite))
|
|
246
246
|
geometry.pixelSpacing = [parts[0], parts[1]];
|
|
247
247
|
}
|
|
248
|
-
const thickness =
|
|
248
|
+
const thickness = tagNumber_find(tags, 'SliceThickness');
|
|
249
249
|
if (thickness !== undefined)
|
|
250
250
|
geometry.sliceThickness = thickness;
|
|
251
|
-
const between =
|
|
251
|
+
const between = tagNumber_find(tags, 'SpacingBetweenSlices');
|
|
252
252
|
if (between !== undefined)
|
|
253
253
|
geometry.spacingBetweenSlices = between;
|
|
254
254
|
return geometry;
|
package/dist/dicom/series.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
package/dist/dicom/tags.js
CHANGED
|
@@ -68,7 +68,7 @@ function dict_flatten(dict) {
|
|
|
68
68
|
const keys = Object.keys(dict)
|
|
69
69
|
.filter((key) => /^[0-9A-Fa-f]{8}$/.test(key) && !STRUCTURAL_TAGS.has(key.toUpperCase()))
|
|
70
70
|
.sort();
|
|
71
|
-
return keys.map((key) =>
|
|
71
|
+
return keys.map((key) => element_convertToTag(key, dict[key]));
|
|
72
72
|
}
|
|
73
73
|
/**
|
|
74
74
|
* Renders one element as a tag.
|
|
@@ -77,7 +77,7 @@ function dict_flatten(dict) {
|
|
|
77
77
|
* @param element - The raw element.
|
|
78
78
|
* @returns The tag.
|
|
79
79
|
*/
|
|
80
|
-
function
|
|
80
|
+
function element_convertToTag(key, element) {
|
|
81
81
|
const upper = key.toUpperCase();
|
|
82
82
|
const tag = `(${upper.slice(0, 4)},${upper.slice(4)})`;
|
|
83
83
|
const groupNumber = parseInt(upper.slice(0, 4), 16);
|
|
@@ -91,7 +91,7 @@ function element_toTag(key, element) {
|
|
|
91
91
|
name,
|
|
92
92
|
vr,
|
|
93
93
|
value: '',
|
|
94
|
-
group: (0, dictionary_js_1.
|
|
94
|
+
group: (0, dictionary_js_1.tagGroup_derive)(groupNumber, entry?.name),
|
|
95
95
|
phi: dictionary_js_1.DICOM_PHI_TAGS.has(name),
|
|
96
96
|
};
|
|
97
97
|
if (vr === 'SQ') {
|
|
@@ -105,7 +105,7 @@ function element_toTag(key, element) {
|
|
|
105
105
|
return result;
|
|
106
106
|
}
|
|
107
107
|
result.value = values.map((value) => value_text(value, vr)).join('\\');
|
|
108
|
-
const decoded =
|
|
108
|
+
const decoded = decodedValue_resolve(name, result.value);
|
|
109
109
|
if (decoded !== undefined)
|
|
110
110
|
result.decoded = decoded;
|
|
111
111
|
return result;
|
|
@@ -151,7 +151,7 @@ function value_text(value, vr) {
|
|
|
151
151
|
* @param value - The tag's text value.
|
|
152
152
|
* @returns Words, or nothing.
|
|
153
153
|
*/
|
|
154
|
-
function
|
|
154
|
+
function decodedValue_resolve(name, value) {
|
|
155
155
|
if (name === 'SOPClassUID' || name === 'MediaStorageSOPClassUID') {
|
|
156
156
|
return dcmjs_1.default.data.DicomMetaDictionary.sopClassNamesByUID[value];
|
|
157
157
|
}
|
package/dist/dicom/tags.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tags.js","sourceRoot":"","sources":["../../src/dicom/tags.ts"],"names":[],"mappings":";;;;;AAoFA,wCAiBC;AA+GD,sCAEC;AAcD,kDA8CC;AAlRD;;;;;;;;;;;;;;;GAeG;AACH,kDAA0B;AAE1B,yCAAqD;AACrD,
|
|
1
|
+
{"version":3,"file":"tags.js","sourceRoot":"","sources":["../../src/dicom/tags.ts"],"names":[],"mappings":";;;;;AAoFA,wCAiBC;AA+GD,sCAEC;AAcD,kDA8CC;AAlRD;;;;;;;;;;;;;;;GAeG;AACH,kDAA0B;AAE1B,yCAAqD;AACrD,mDAAuG;AAkDvG,mDAAmD;AACnD,MAAM,QAAQ,GAAwB,IAAI,GAAG,CAAS,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC;AAElG,gFAAgF;AAChF,MAAM,eAAe,GAAwB,IAAI,GAAG,CAAS,CAAC,UAAU,EAAE,UAAU,EAAE,UAAU,CAAC,CAAC,CAAC;AAEnG;;;;;;;;GAQG;AACH,SAAgB,cAAc,CAAC,KAAa,EAAE,aAAsB,KAAK;IACvE,MAAM,MAAM,GAAgB,IAAI,UAAU,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC,MAAqB,CAAC;IAChF,IAAI,CAAC;QACH,MAAM,OAAO,GAAG,eAAK,CAAC,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,CAAC,EAAE,YAAY,EAAE,IAAI,EAAE,QAAQ,EAAE,UAAU,EAAE,oBAAoB,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,YAAY,EAAE,IAAI,EAAE,CAAC,CAAC;QAC1K,uEAAuE;QACvE,4BAA4B;QAC5B,IAAI,UAAU;YAAE,OAAQ,OAAO,CAAC,IAAgC,CAAC,UAAU,CAAC,CAAC;QAC7E,MAAM,IAAI,GAAe,YAAY,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QACpD,MAAM,IAAI,GAAe,YAAY,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QACpD,MAAM,MAAM,GAAyB,IAAI,CAAC,IAAI,CAAC,CAAC,GAAa,EAAW,EAAE,CAAC,GAAG,CAAC,IAAI,KAAK,mBAAmB,CAAC,CAAC;QAC7G,OAAO,IAAA,UAAE,EAAC;YACR,IAAI,EAAE,CAAC,GAAG,IAAI,EAAE,GAAG,IAAI,CAAC;YACxB,GAAG,CAAC,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,iBAAiB,EAAE,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;SACrE,CAAC,CAAC;IACL,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;AACH,CAAC;AAED;;;;;GAKG;AACH,SAAS,YAAY,CAAC,IAAe;IACnC,MAAM,IAAI,GAAa,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC;SACrC,MAAM,CAAC,CAAC,GAAW,EAAW,EAAE,CAAC,kBAAkB,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,eAAe,CAAC,GAAG,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,CAAC;SACzG,IAAI,EAAE,CAAC;IACV,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,GAAW,EAAY,EAAE,CAAC,oBAAoB,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;AACnF,CAAC;AAED;;;;;;GAMG;AACH,SAAS,oBAAoB,CAAC,GAAW,EAAE,OAAqB;IAC9D,MAAM,KAAK,GAAW,GAAG,CAAC,WAAW,EAAE,CAAC;IACxC,MAAM,GAAG,GAAW,IAAI,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC;IAC/D,MAAM,WAAW,GAAW,QAAQ,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;IAC5D,MAAM,KAAK,GAAqC,eAAK,CAAC,IAAI,CAAC,mBAAmB,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;IAC/F,MAAM,SAAS,GAAY,WAAW,GAAG,CAAC,KAAK,CAAC,CAAC;IACjD,MAAM,IAAI,GAAW,KAAK,EAAE,IAAI,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAC3E,MAAM,EAAE,GAAW,OAAO,CAAC,EAAE,IAAI,KAAK,EAAE,EAAE,IAAI,IAAI,CAAC;IACnD,MAAM,MAAM,GAAc,OAAO,CAAC,KAAK,IAAI,EAAE,CAAC;IAE9C,MAAM,MAAM,GAAa;QACvB,GAAG;QACH,IAAI;QACJ,EAAE;QACF,KAAK,EAAE,EAAE;QACT,KAAK,EAAE,IAAA,+BAAe,EAAC,WAAW,EAAE,KAAK,EAAE,IAAI,CAAC;QAChD,GAAG,EAAE,8BAAc,CAAC,GAAG,CAAC,IAAI,CAAC;KAC9B,CAAC;IAEF,IAAI,EAAE,KAAK,IAAI,EAAE,CAAC;QAChB,MAAM,KAAK,GAAiB,MAAM,CAAC,GAAG,CAAC,CAAC,IAAa,EAAc,EAAE,CAAC,YAAY,CAAC,IAAiB,CAAC,CAAC,CAAC;QACvG,MAAM,CAAC,KAAK,GAAG,KAAK,CAAC;QACrB,MAAM,CAAC,KAAK,GAAG,GAAG,KAAK,CAAC,MAAM,QAAQ,KAAK,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QACtE,OAAO,MAAM,CAAC;IAChB,CAAC;IACD,IAAI,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC;QACrB,MAAM,CAAC,KAAK,GAAG,IAAI,UAAU,CAAC,MAAM,CAAC,SAAS,CAAC;QAC/C,OAAO,MAAM,CAAC;IAChB,CAAC;IACD,MAAM,CAAC,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,KAAc,EAAU,EAAE,CAAC,UAAU,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACxF,MAAM,OAAO,GAAuB,oBAAoB,CAAC,IAAI,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC;IAC7E,IAAI,OAAO,KAAK,SAAS;QAAE,MAAM,CAAC,OAAO,GAAG,OAAO,CAAC;IACpD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;GAKG;AACH,SAAS,UAAU,CAAC,MAAiB;IACnC,IAAI,KAAK,GAAW,CAAC,CAAC;IACtB,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;QAC3B,IAAI,KAAK,YAAY,WAAW;YAAE,KAAK,IAAI,KAAK,CAAC,UAAU,CAAC;aACvD,IAAI,WAAW,CAAC,MAAM,CAAC,KAAK,CAAC;YAAE,KAAK,IAAI,KAAK,CAAC,UAAU,CAAC;IAChE,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,UAAU,CAAC,KAAc,EAAE,EAAU;IAC5C,IAAI,EAAE,KAAK,IAAI,IAAI,KAAK,KAAK,IAAI,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE,CAAC;QAC/D,MAAM,KAAK,GAA4B,KAAgC,CAAC;QACxE,OAAO,MAAM,CAAC,KAAK,CAAC,UAAU,IAAI,KAAK,CAAC,WAAW,IAAI,KAAK,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC;IAC/E,CAAC;IACD,IAAI,KAAK,KAAK,IAAI,IAAI,KAAK,KAAK,SAAS;QAAE,OAAO,EAAE,CAAC;IACrD,OAAO,MAAM,CAAC,KAAK,CAAC,CAAC;AACvB,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,oBAAoB,CAAC,IAAY,EAAE,KAAa;IACvD,IAAI,IAAI,KAAK,aAAa,IAAI,IAAI,KAAK,yBAAyB,EAAE,CAAC;QACjE,OAAO,eAAK,CAAC,IAAI,CAAC,mBAAmB,CAAC,kBAAkB,CAAC,KAAK,CAAC,CAAC;IAClE,CAAC;IACD,OAAO,IAAA,+BAAe,EAAC,IAAI,EAAE,KAAK,CAAC,CAAC;AACtC,CAAC;AAED;;;;;;GAMG;AACH,SAAgB,aAAa,CAAC,IAAgB,EAAE,IAAY;IAC1D,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,GAAa,EAAW,EAAE,CAAC,GAAG,CAAC,IAAI,KAAK,IAAI,CAAC,CAAC;AAClE,CAAC;AAED;;;;;;;;;;;GAWG;AACH,SAAgB,mBAAmB,CAAC,KAAiD;IACnF,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,KAAK,GAAuC,IAAI,GAAG,EAAiC,CAAC;IAC3F,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,IAAI,GAA0B,IAAI,GAAG,EAAoB,CAAC;QAChE,KAAK,MAAM,GAAG,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC;YACjC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;gBACxB,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,IAAI,GAAG,EAAoB,CAAC,CAAC;gBAChD,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;YACtB,CAAC;YACD,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC;QACzB,CAAC;QACD,KAAK,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,IAAI;YAAE,KAAK,CAAC,GAAG,CAAC,GAAG,CAAE,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;IACrE,CAAC;IAED,MAAM,QAAQ,GAAe,EAAE,CAAC;IAChC,MAAM,OAAO,GAAsB,EAAE,CAAC;IACtC,KAAK,MAAM,GAAG,IAAI,KAAK,CAAC,IAAI,EAAE,EAAE,CAAC;QAC/B,MAAM,OAAO,GAA0B,KAAK,CAAC,GAAG,CAAC,GAAG,CAAE,CAAC;QACvD,MAAM,MAAM,GAAkD,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAA0C,EAAE;YACvH,MAAM,GAAG,GAAyB,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YACzD,OAAO,EAAE,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,GAAG,KAAK,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,cAAc,CAAC,GAAG,CAAC,EAAE,CAAC;QACpF,CAAC,CAAC,CAAC;QACH,MAAM,cAAc,GAAuB,IAAI,GAAG,CAAgB,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,EAAiB,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC;QACrH,MAAM,MAAM,GAAa,OAAO,CAAC,MAAM,EAAE,CAAC,IAAI,EAAE,CAAC,KAAiB,CAAC;QACnE,IAAI,cAAc,CAAC,IAAI,KAAK,CAAC,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC;YAC3D,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;YACtB,SAAS;QACX,CAAC;QACD,MAAM,OAAO,GAAkD,MAAM,CAAC,MAAM,CAAC,CAAC,KAAK,EAAW,EAAE,CAAC,KAAK,CAAC,KAAK,KAAK,IAAI,CAAC,CAAC;QACvH,OAAO,CAAC,IAAI,CAAC;YACX,GAAG,EAAE,MAAM,CAAC,GAAG;YACf,IAAI,EAAE,MAAM,CAAC,IAAI;YACjB,EAAE,EAAE,MAAM,CAAC,EAAE;YACb,KAAK,EAAE,MAAM,CAAC,KAAK;YACnB,GAAG,EAAE,MAAM,CAAC,GAAG;YACf,QAAQ,EAAE,cAAc,CAAC,IAAI,GAAG,CAAC,cAAc,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YAClE,KAAK,EAAE,OAAO,CAAC,CAAC,CAAC,CAAC,KAAe;YACjC,IAAI,EAAE,OAAO,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,KAAe;YACjD,MAAM,EAAE,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,EAA0C,EAAE,CAAC,CAAC;gBACrE,IAAI,EAAE,KAAK,CAAC,IAAI;gBAChB,KAAK,EAAE,KAAK,CAAC,KAAK,KAAK,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAE,CAAC,KAAK;aACpE,CAAC,CAAC;SACJ,CAAC,CAAC;IACL,CAAC;IACD,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAC;AAC/B,CAAC;AAED;;;;;;GAMG;AACH,SAAS,cAAc,CAAC,GAAa;IACnC,IAAI,GAAG,CAAC,KAAK,KAAK,SAAS;QAAE,OAAO,GAAG,CAAC,KAAK,CAAC;IAC9C,OAAO,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAgB,EAAY,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,KAAe,EAAU,EAAE,CAAC,GAAG,KAAK,CAAC,GAAG,IAAI,cAAc,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AACvJ,CAAC"}
|
|
@@ -8,4 +8,4 @@ import { Result } from '@fnndsc/cumin';
|
|
|
8
8
|
* @param filePath - Absolute ChRIS file path.
|
|
9
9
|
* @returns Ok(fileId), or Err (with a message pushed to errorStack) on failure.
|
|
10
10
|
*/
|
|
11
|
-
export declare function
|
|
11
|
+
export declare function pathFileId_resolve(filePath: string): Promise<Result<number>>;
|
package/dist/files/fileLookup.js
CHANGED
|
@@ -33,7 +33,7 @@ var __importStar = (this && this.__importStar) || (function () {
|
|
|
33
33
|
};
|
|
34
34
|
})();
|
|
35
35
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
36
|
-
exports.
|
|
36
|
+
exports.pathFileId_resolve = pathFileId_resolve;
|
|
37
37
|
/**
|
|
38
38
|
* @file Resolve an absolute ChRIS file path to its numeric file id.
|
|
39
39
|
*
|
|
@@ -51,7 +51,7 @@ const index_js_1 = require("./index.js");
|
|
|
51
51
|
* @param filePath - Absolute ChRIS file path.
|
|
52
52
|
* @returns Ok(fileId), or Err (with a message pushed to errorStack) on failure.
|
|
53
53
|
*/
|
|
54
|
-
async function
|
|
54
|
+
async function pathFileId_resolve(filePath) {
|
|
55
55
|
const dir = path.posix.dirname(filePath);
|
|
56
56
|
const name = path.posix.basename(filePath);
|
|
57
57
|
const group = await (0, index_js_1.files_getGroup)('files', dir);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"fileLookup.js","sourceRoot":"","sources":["../../src/files/fileLookup.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAgCA,
|
|
1
|
+
{"version":3,"file":"fileLookup.js","sourceRoot":"","sources":["../../src/files/fileLookup.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAgCA,gDA+BC;AA/DD;;;;GAIG;AACH,2CAA6B;AAC7B,yCAQuB;AACvB,yCAA4C;AAQ5C;;;;;;;;GAQG;AACI,KAAK,UAAU,kBAAkB,CAAC,QAAgB;IACvD,MAAM,GAAG,GAAW,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC;IACjD,MAAM,IAAI,GAAW,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;IAEnD,MAAM,KAAK,GAAqD,MAAM,IAAA,yBAAc,EAAC,OAAO,EAAE,GAAG,CAAC,CAAC;IACnG,IAAI,CAAC,KAAK,EAAE,CAAC;QACX,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,MAAM,OAAO,GAAgC,MAAM,KAAK,CAAC,KAAK,CAAC,gBAAgB,EAAE,CAAC;IAClF,IAAI,CAAC,OAAO,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC;QACnC,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,gCAAgC,GAAG,EAAE,CAAC,CAAC;QACtE,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,MAAM,IAAI,GAAyB,OAAO,CAAC,SAAuB,CAAC,IAAI,CAAC,CAAC,CAAU,EAAE,EAAE;QACrF,MAAM,QAAQ,GAAW,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC;QAC5D,OAAO,QAAQ,KAAK,IAAI,IAAI,QAAQ,KAAK,KAAK,IAAI,EAAE,CAAC;IACvD,CAAC,CAAC,CAAC;IAEH,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,mBAAmB,IAAI,OAAO,GAAG,EAAE,CAAC,CAAC;QACpE,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,IAAI,OAAO,IAAI,CAAC,EAAE,KAAK,QAAQ,EAAE,CAAC;QAChC,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,yBAAyB,IAAI,EAAE,CAAC,CAAC;QAChE,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,OAAO,IAAA,UAAE,EAAC,IAAI,CAAC,EAAE,CAAC,CAAC;AACrB,CAAC"}
|
package/dist/files/index.js
CHANGED
|
@@ -126,7 +126,7 @@ async function files_copyRecursively(srcPath, destPath) {
|
|
|
126
126
|
// copied onto a folder's name, and a large copy pays one listing per
|
|
127
127
|
// folder rather than one per file.
|
|
128
128
|
const foldersIn = new Map();
|
|
129
|
-
const
|
|
129
|
+
const folders_fetch = async (folder) => {
|
|
130
130
|
const known = foldersIn.get(folder);
|
|
131
131
|
if (known !== undefined)
|
|
132
132
|
return known;
|
|
@@ -150,13 +150,13 @@ async function files_copyRecursively(srcPath, destPath) {
|
|
|
150
150
|
failCount++;
|
|
151
151
|
}
|
|
152
152
|
else {
|
|
153
|
-
(await
|
|
153
|
+
(await folders_fetch(path.posix.dirname(targetPath))).add(path.posix.basename(targetPath));
|
|
154
154
|
successCount++;
|
|
155
155
|
}
|
|
156
156
|
}
|
|
157
157
|
else if (item.type === 'file') {
|
|
158
158
|
(0, cumin_1.runtimeOutput_data)(` Copying file: ${path.posix.basename(normalizedItemPath)}\n`);
|
|
159
|
-
if ((await
|
|
159
|
+
if ((await folders_fetch(path.posix.dirname(targetPath))).has(path.posix.basename(targetPath))) {
|
|
160
160
|
(0, cumin_1.runtimeOutput_err)(` Warning: a folder already holds ${targetPath}; the file is not copied over it\n`);
|
|
161
161
|
failCount++;
|
|
162
162
|
continue;
|
|
@@ -295,7 +295,7 @@ async function files_touch(target, content) {
|
|
|
295
295
|
cumin_1.errorStack.stack_push("error", `touch: ${target}: a projected file takes text (--withContents)`);
|
|
296
296
|
return false;
|
|
297
297
|
}
|
|
298
|
-
return (0, fond_1.
|
|
298
|
+
return (0, fond_1.vfsOutcome_convertToResult)(await vfsDispatcher.write(target, content), 'write', target).ok;
|
|
299
299
|
}
|
|
300
300
|
// CUBE's upload does not replace: uploading over a path that already holds
|
|
301
301
|
// a file leaves the OLD content in place and still reports success, so a
|
|
@@ -734,7 +734,7 @@ async function files_share(fileId, options) {
|
|
|
734
734
|
async function fileContent_get(filePath) {
|
|
735
735
|
const provider = dispatcher_js_1.vfsDispatcher.provider_get(filePath);
|
|
736
736
|
if (provider && provider.prefix !== '') {
|
|
737
|
-
return (0, fond_1.
|
|
737
|
+
return (0, fond_1.vfsOutcome_convertToResult)(await dispatcher_js_1.vfsDispatcher.read(filePath), 'read', filePath);
|
|
738
738
|
}
|
|
739
739
|
if (filePath.startsWith('/PIPELINES/')) {
|
|
740
740
|
return (0, pipeline_content_1.fileContent_getPipeline)(filePath);
|
|
@@ -756,7 +756,7 @@ async function fileContent_get(filePath) {
|
|
|
756
756
|
async function fileContent_getBinary(filePath) {
|
|
757
757
|
const provider = dispatcher_js_1.vfsDispatcher.provider_get(filePath);
|
|
758
758
|
if (provider && provider.prefix !== '') {
|
|
759
|
-
return (0, fond_1.
|
|
759
|
+
return (0, fond_1.vfsOutcome_convertToResult)(await dispatcher_js_1.vfsDispatcher.readBinary(filePath), 'readBinary', filePath);
|
|
760
760
|
}
|
|
761
761
|
if (filePath.startsWith('/PIPELINES/')) {
|
|
762
762
|
return (0, pipeline_content_1.fileContent_getPipelineBinary)(filePath);
|
|
@@ -777,7 +777,7 @@ async function fileContent_getBinary(filePath) {
|
|
|
777
777
|
async function fileContent_getBinaryStream(filePath) {
|
|
778
778
|
const provider = dispatcher_js_1.vfsDispatcher.provider_get(filePath);
|
|
779
779
|
if (provider && provider.prefix !== '') {
|
|
780
|
-
const res = (0, fond_1.
|
|
780
|
+
const res = (0, fond_1.vfsOutcome_convertToResult)(await dispatcher_js_1.vfsDispatcher.readBinary(filePath), 'readBinary', filePath);
|
|
781
781
|
return res.ok ? (0, cumin_1.Ok)({ stream: res.value, size: res.value.length }) : (0, cumin_1.Err)();
|
|
782
782
|
}
|
|
783
783
|
if (filePath.startsWith('/PIPELINES/')) {
|