@fnndsc/salsa 4.2.1 → 4.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/pipelines/manifest.d.ts +13 -0
- package/dist/pipelines/manifest.js +19 -1
- package/dist/pipelines/manifest.js.map +1 -1
- package/dist/vfs/dispatcher.d.ts +3 -0
- package/dist/vfs/dispatcher.js +3 -1
- package/dist/vfs/dispatcher.js.map +1 -1
- package/dist/vfs/providers/pacs.d.ts +6 -2
- package/dist/vfs/providers/pacs.js +4 -0
- package/dist/vfs/providers/pacs.js.map +1 -1
- package/package.json +4 -3
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@@ -78,6 +78,19 @@ export interface PipelineManifestGetOptions {
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* @returns Result containing the requested registered Pipeline projection.
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*/
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export declare function pipelineManifestForPipeline_get(pipeline: PipelineRecord, resource: PipelineHandle, options?: PipelineManifestGetOptions): Promise<Result<PipelineManifest>>;
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81
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+
/**
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* Picks the compute a node runs on when the run names none.
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83
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*
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* `host` is what a stock ChRIS calls its compute, so it stays the choice
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* wherever the plugin is registered there, or where the plugin's computes
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86
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* were not read. A CUBE that names its computes otherwise (ekanite's
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* `argentum`) would refuse every node on `host`, so the plugin's first
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* registered compute is taken instead.
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*
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* @param computeResources - The computes the plugin is registered on, when read.
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* @returns The compute's name.
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*/
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export declare function computeResourceName_choose(computeResources: ReadonlyArray<string> | undefined): string;
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/**
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* Fetch one registered pipeline as its CUBE-specific invocation manifest.
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*
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@@ -1,6 +1,7 @@
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1
1
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"use strict";
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2
2
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Object.defineProperty(exports, "__esModule", { value: true });
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3
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exports.pipelineManifestForPipeline_get = pipelineManifestForPipeline_get;
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4
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exports.computeResourceName_choose = computeResourceName_choose;
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exports.pipelineManifest_get = pipelineManifest_get;
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/**
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* @file Read-only registered-pipeline invocation manifest.
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@@ -109,6 +110,23 @@ async function pipelineManifestForPipeline_get(pipeline, resource, options = {})
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function definedValue_getFirst(...values) {
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return values.find((value) => value !== undefined);
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}
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+
/**
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* Picks the compute a node runs on when the run names none.
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*
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* `host` is what a stock ChRIS calls its compute, so it stays the choice
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* wherever the plugin is registered there, or where the plugin's computes
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* were not read. A CUBE that names its computes otherwise (ekanite's
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* `argentum`) would refuse every node on `host`, so the plugin's first
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* registered compute is taken instead.
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*
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* @param computeResources - The computes the plugin is registered on, when read.
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* @returns The compute's name.
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*/
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function computeResourceName_choose(computeResources) {
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if (computeResources === undefined || computeResources.length === 0 || computeResources.includes('host'))
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return 'host';
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return computeResources[0];
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}
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async function pipelineManifest_project(pipelineRecord, pipeline, detail, cache) {
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const manifestKey = `${pipelineRecord.id}:${detail}`;
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try {
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@@ -142,7 +160,7 @@ async function pipelineManifest_project(pipelineRecord, pipeline, detail, cache)
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pluginName: piping.plugin_name ?? '?',
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pluginVersion: piping.plugin_version ?? '',
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parentID: piping.previous_id ?? null,
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-
computeResourceName:
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+
computeResourceName: computeResourceName_choose(computeResources),
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cpuLimit: definedValue_getFirst(resource?.plugin_piping_cpu_limit, piping.cpu_limit),
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memoryLimit: definedValue_getFirst(resource?.plugin_piping_memory_limit, piping.memory_limit),
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gpuLimit: definedValue_getFirst(resource?.plugin_piping_gpu_limit, piping.gpu_limit),
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../src/pipelines/manifest.ts"],"names":[],"mappings":";;AA+NA,0EAkBC;
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1
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{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../src/pipelines/manifest.ts"],"names":[],"mappings":";;AA+NA,0EAkBC;AAkBD,gEAGC;AA8ED,oDAmCC;AAvXD;;;;;;GAMG;AACH,yCAcuB;AAmGvB;;;;;GAKG;AACH,SAAS,uBAAuB,CAAC,GAA+B;IAC9D,IAAI,OAAO,GAAG,CAAC,gBAAgB,KAAK,QAAQ,IAAI,OAAO,GAAG,CAAC,UAAU,KAAK,QAAQ;QAAE,OAAO,IAAI,CAAC;IAChG,OAAO,EAAE,GAAG,GAAG,EAAE,gBAAgB,EAAE,GAAG,CAAC,gBAAgB,EAAE,UAAU,EAAE,GAAG,CAAC,UAAU,EAAE,KAAK,EAAE,GAAG,CAAC,KAAK,EAAE,CAAC;AAC1G,CAAC;AAkBD,MAAM,wBAAwB,GAAW,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC;AACvD,MAAM,cAAc,GAAiD,IAAI,OAAO,EAAE,CAAC;AAEnF,SAAS,cAAc,CAAI,OAAwC,EAAE,GAAW;IAC9E,MAAM,KAAK,GAAmC,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IAC/D,IAAI,KAAK,KAAK,SAAS;QAAE,OAAO,SAAS,CAAC;IAC1C,IAAI,KAAK,CAAC,SAAS,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC;QAClC,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QACpB,OAAO,SAAS,CAAC;IACnB,CAAC;IACD,OAAO,KAAK,CAAC,KAAK,CAAC;AACrB,CAAC;AAED,SAAS,cAAc,CAAI,OAAwC,EAAE,GAAW,EAAE,KAAQ;IACxF,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,wBAAwB,EAAE,CAAC,CAAC;AAChF,CAAC;AAED,SAAS,uBAAuB,CAAC,MAAc;IAC7C,IAAI,KAAK,GAA4C,cAAc,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IAChF,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;QACxB,KAAK,GAAG,EAAE,OAAO,EAAE,IAAI,GAAG,EAAE,EAAE,SAAS,EAAE,IAAI,GAAG,EAAE,EAAE,cAAc,EAAE,IAAI,GAAG,EAAE,EAAE,CAAC;QAChF,cAAc,CAAC,GAAG,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;IACpC,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED,KAAK,UAAU,kBAAkB,CAC/B,KAAkC,EAClC,IAAsB,EACtB,MAAkB;IAElB,MAAM,GAAG,GAAW,MAAM,CAAC,WAAW,KAAK,SAAS,IAAI,MAAM,CAAC,cAAc,KAAK,SAAS;QACzF,CAAC,CAAC,GAAG,MAAM,CAAC,WAAW,IAAI,MAAM,CAAC,cAAc,EAAE;QAClD,CAAC,CAAC,UAAU,MAAM,CAAC,EAAE,EAAE,CAAC;IAC1B,IAAI,eAAe,GAAwC,cAAc,CAAC,KAAK,CAAC,cAAc,EAAE,GAAG,CAAC,CAAC;IACrG,IAAI,eAAe,KAAK,SAAS,EAAE,CAAC;QAClC,eAAe,GAAG,CAAC,KAAK,IAA6B,EAAE;YACrD,MAAM,MAAM,GAAwB,MAAM,IAAI,CAAC,UAAU,EAAE,CAAC;YAC5D,IAAI,MAAM,KAAK,IAAI;gBAAE,MAAM,IAAI,KAAK,CAAC,+BAA+B,CAAC,CAAC;YACtE,MAAM,CAAC,aAAa,EAAE,WAAW,CAAC,GAAG,MAAM,OAAO,CAAC,GAAG,CAAC;gBACrD,IAAA,uBAAe,EAAC,CAAC,MAAc,EAAE,KAAa,EAAE,EAAE,CAAC,MAAM,CAAC,kBAAkB,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC;gBAChG,IAAA,uBAAe,EAAC,CAAC,MAAc,EAAE,KAAa,EAAE,EAAE,CAAC,MAAM,CAAC,wBAAwB,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC;aACvG,CAAC,CAAC;YACH,OAAO;gBACL,oBAAoB,EAAE,aAAa,CAAC,GAAG,CACrC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;oBACd,IAAI,EAAE,SAAS,CAAC,IAAI;oBACpB,IAAI,EAAE,SAAS,CAAC,IAAI,IAAI,QAAQ;oBAChC,QAAQ,EAAE,SAAS,CAAC,QAAQ,IAAI,KAAK;oBACrC,OAAO,EAAE,SAAS,CAAC,OAAO;oBAC1B,IAAI,EAAE,SAAS,CAAC,IAAI;iBACrB,CAAC,CACH;gBACD,gBAAgB,EAAE,WAAW;qBAC1B,GAAG,CAAC,CAAC,OAAO,EAAsB,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC;qBAClD,MAAM,CAAC,CAAC,IAAwB,EAAkB,EAAE,CAAC,OAAO,IAAI,KAAK,QAAQ,CAAC;aAClF,CAAC;QACJ,CAAC,CAAC,EAAE,CAAC;QACL,cAAc,CAAC,KAAK,CAAC,cAAc,EAAE,GAAG,EAAE,eAAe,CAAC,CAAC;IAC7D,CAAC;IACD,IAAI,CAAC;QACH,OAAO,MAAM,eAAe,CAAC;IAC/B,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,KAAK,CAAC,cAAc,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QACjC,MAAM,KAAK,CAAC;IACd,CAAC;AACH,CAAC;AAED;;;;;;;GAOG;AACI,KAAK,UAAU,+BAA+B,CACnD,QAAwB,EACxB,QAAwB,EACxB,UAAsC,EAAE;IAExC,MAAM,MAAM,GAAG,MAAM,uBAAe,CAAC,UAAU,EAAE,CAAC;IAClD,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,kDAAkD,CAAC,CAAC;QACnF,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IACD,MAAM,KAAK,GAAgC,uBAAuB,CAAC,MAAgB,CAAC,CAAC;IACrF,cAAc,CAAC,KAAK,CAAC,OAAO,EAAE,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;IAC7D,IAAI,OAAO,QAAQ,CAAC,IAAI,KAAK,QAAQ;QAAE,cAAc,CAAC,KAAK,CAAC,OAAO,EAAE,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;IAC9F,MAAM,MAAM,GAA+B,OAAO,CAAC,MAAM,IAAI,WAAW,CAAC;IACzE,MAAM,WAAW,GAAW,GAAG,QAAQ,CAAC,EAAE,IAAI,MAAM,EAAE,CAAC;IACvD,MAAM,cAAc,GAAiC,cAAc,CAAC,KAAK,CAAC,SAAS,EAAE,WAAW,CAAC,CAAC;IAClG,IAAI,cAAc,KAAK,SAAS;QAAE,OAAO,IAAA,UAAE,EAAC,cAAc,CAAC,CAAC;IAC5D,OAAO,wBAAwB,CAAC,QAAQ,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,CAAC,CAAC;AACrE,CAAC;AAED,SAAS,qBAAqB,CAAC,GAAG,MAAiB;IACjD,OAAO,MAAM,CAAC,IAAI,CAAC,CAAC,KAAc,EAAW,EAAE,CAAC,KAAK,KAAK,SAAS,CAAC,CAAC;AACvE,CAAC;AAED;;;;;;;;;;;GAWG;AACH,SAAgB,0BAA0B,CAAC,gBAAmD;IAC5F,IAAI,gBAAgB,KAAK,SAAS,IAAI,gBAAgB,CAAC,MAAM,KAAK,CAAC,IAAI,gBAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC;QAAE,OAAO,MAAM,CAAC;IACxH,OAAO,gBAAgB,CAAC,CAAC,CAAW,CAAC;AACvC,CAAC;AAED,KAAK,UAAU,wBAAwB,CACrC,cAA8B,EAC9B,QAAwB,EACxB,MAAkC,EAClC,KAAkC;IAElC,MAAM,WAAW,GAAW,GAAG,cAAc,CAAC,EAAE,IAAI,MAAM,EAAE,CAAC;IAC7D,IAAI,CAAC;QACH,MAAM,CAAC,WAAW,EAAE,WAAW,CAAC,GAAG,MAAM,OAAO,CAAC,GAAG,CAAC;YACnD,IAAA,uBAAe,EAAC,CAAC,MAAc,EAAE,KAAa,EAAE,EAAE,CAAC,QAAQ,CAAC,qBAAqB,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC;YACrG,IAAA,uBAAe,EAAC,CAAC,MAAc,EAAE,KAAa,EAAE,EAAE,CAAC,QAAQ,CAAC,yBAAyB,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC;SAC1G,CAAC,CAAC;QACH,MAAM,QAAQ,GAA2B,WAAW;aACjD,GAAG,CAAC,CAAC,GAA+B,EAA+B,EAAE,CAAC,uBAAuB,CAAC,GAAG,CAAC,CAAC;aACnG,MAAM,CAAC,CAAC,GAAgC,EAA+B,EAAE,CAAC,GAAG,KAAK,IAAI,CAAC,CAAC;QAC3F,MAAM,gBAAgB,GAAwC,IAAI,GAAG,EAAE,CAAC;QACxE,KAAK,MAAM,SAAS,IAAI,QAAQ,EAAE,CAAC;YACjC,MAAM,OAAO,GAA2B,gBAAgB,CAAC,GAAG,CAAC,SAAS,CAAC,gBAAgB,CAAC,IAAI,EAAE,CAAC;YAC/F,OAAO,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;YACxB,gBAAgB,CAAC,GAAG,CAAC,SAAS,CAAC,gBAAgB,EAAE,OAAO,CAAC,CAAC;QAC5D,CAAC;QAED,MAAM,KAAK,GAA2B,MAAM,OAAO,CAAC,G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package/dist/vfs/dispatcher.d.ts
CHANGED
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@@ -11,12 +11,15 @@
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* @module
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*/
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import { VFSDispatcher } from "@fnndsc/fond";
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+
import { PacsVfsProvider } from "./providers/pacs.js";
|
|
14
15
|
export { VFSDispatcher } from "@fnndsc/fond";
|
|
15
16
|
/**
|
|
16
17
|
* fond's dispatcher with the ChRIS backend's mounts registered, and CUBE's
|
|
17
18
|
* files as the fallback.
|
|
18
19
|
*/
|
|
19
20
|
export declare class CubeVfsDispatcher extends VFSDispatcher {
|
|
21
|
+
/** The PACS mount, whose decoded answers other verbs read from its cache. */
|
|
22
|
+
readonly pacs: PacsVfsProvider;
|
|
20
23
|
constructor();
|
|
21
24
|
}
|
|
22
25
|
/** The session's one filesystem dispatcher. */
|
package/dist/vfs/dispatcher.js
CHANGED
|
@@ -27,9 +27,11 @@ Object.defineProperty(exports, "VFSDispatcher", { enumerable: true, get: functio
|
|
|
27
27
|
* files as the fallback.
|
|
28
28
|
*/
|
|
29
29
|
class CubeVfsDispatcher extends fond_1.VFSDispatcher {
|
|
30
|
+
/** The PACS mount, whose decoded answers other verbs read from its cache. */
|
|
31
|
+
pacs = new pacs_js_1.PacsVfsProvider();
|
|
30
32
|
constructor() {
|
|
31
33
|
super(new native_js_1.NativeVfsProvider());
|
|
32
|
-
this.provider_register(
|
|
34
|
+
this.provider_register(this.pacs);
|
|
33
35
|
this.provider_register(new etc_js_1.EtcVfsProvider());
|
|
34
36
|
this.provider_register(new proc_js_1.ProcVfsProvider());
|
|
35
37
|
// Two relations CUBE owns: the tags a feed can carry, and what is known
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"dispatcher.js","sourceRoot":"","sources":["../../src/vfs/dispatcher.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;GAWG;;;AAEH,uCAA6C;AAC7C,qDAA0D;AAC1D,iDAAsD;AACtD,+CAAoD;AACpD,iDAAsD;AACtD,yDAA8D;AAC9D,mDAAwD;AAExD,qCAA6C;AAApC,qGAAA,aAAa,OAAA;AAEtB;;;GAGG;AACH,MAAa,iBAAkB,SAAQ,oBAAa;IAClD;QACE,KAAK,CAAC,IAAI,6BAAiB,EAAE,CAAC,CAAC;QAC/B,IAAI,CAAC,iBAAiB,CAAC,IAAI,
|
|
1
|
+
{"version":3,"file":"dispatcher.js","sourceRoot":"","sources":["../../src/vfs/dispatcher.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;GAWG;;;AAEH,uCAA6C;AAC7C,qDAA0D;AAC1D,iDAAsD;AACtD,+CAAoD;AACpD,iDAAsD;AACtD,yDAA8D;AAC9D,mDAAwD;AAExD,qCAA6C;AAApC,qGAAA,aAAa,OAAA;AAEtB;;;GAGG;AACH,MAAa,iBAAkB,SAAQ,oBAAa;IAClD,6EAA6E;IAC7D,IAAI,GAAoB,IAAI,yBAAe,EAAE,CAAC;IAE9D;QACE,KAAK,CAAC,IAAI,6BAAiB,EAAE,CAAC,CAAC;QAC/B,IAAI,CAAC,iBAAiB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAClC,IAAI,CAAC,iBAAiB,CAAC,IAAI,uBAAc,EAAE,CAAC,CAAC;QAC7C,IAAI,CAAC,iBAAiB,CAAC,IAAI,yBAAe,EAAE,CAAC,CAAC;QAC9C,wEAAwE;QACxE,sEAAsE;QACtE,uCAAuC;QACvC,IAAI,CAAC,iBAAiB,CAAC,IAAI,iCAAmB,EAAE,CAAC,CAAC;QAClD,IAAI,CAAC,iBAAiB,CAAC,IAAI,2BAAgB,EAAE,CAAC,CAAC;IACjD,CAAC;CACF;AAfD,8CAeC;AAED,+CAA+C;AAClC,QAAA,aAAa,GAAsB,IAAI,iBAAiB,EAAE,CAAC"}
|
|
@@ -6,7 +6,7 @@
|
|
|
6
6
|
* @module
|
|
7
7
|
*/
|
|
8
8
|
import { type VfsOutcome } from '@fnndsc/fond';
|
|
9
|
-
import { Result } from "@fnndsc/cumin";
|
|
9
|
+
import { Result, PACSQueryDecodedResult } from "@fnndsc/cumin";
|
|
10
10
|
import { VFSProvider, VFSItem, CpOptions } from "../provider.js";
|
|
11
11
|
type SortOptions = {
|
|
12
12
|
sort?: "name" | "size" | "date" | "owner";
|
|
@@ -35,10 +35,14 @@ export declare class PacsVfsProvider implements VFSProvider {
|
|
|
35
35
|
/**
|
|
36
36
|
* Fetches the decoded query result, leveraging a cache to prevent redundant API calls.
|
|
37
37
|
*
|
|
38
|
+
* Public so a verb that reads one series' facts out of an answer the
|
|
39
|
+
* operator just listed (`gather add`) takes them from this cache rather
|
|
40
|
+
* than asking CUBE again.
|
|
41
|
+
*
|
|
38
42
|
* @param queryId - The ID of the PACS query to decode.
|
|
39
43
|
* @returns Promise resolving to the decoded PACS query result, or null if fetch fails.
|
|
40
44
|
*/
|
|
41
|
-
|
|
45
|
+
queryResult_fetch(queryId: number): Promise<PACSQueryDecodedResult | null>;
|
|
42
46
|
/**
|
|
43
47
|
* Lazily lists virtual directory contents under `/net/pacs`.
|
|
44
48
|
*/
|
|
@@ -225,6 +225,10 @@ class PacsVfsProvider {
|
|
|
225
225
|
/**
|
|
226
226
|
* Fetches the decoded query result, leveraging a cache to prevent redundant API calls.
|
|
227
227
|
*
|
|
228
|
+
* Public so a verb that reads one series' facts out of an answer the
|
|
229
|
+
* operator just listed (`gather add`) takes them from this cache rather
|
|
230
|
+
* than asking CUBE again.
|
|
231
|
+
*
|
|
228
232
|
* @param queryId - The ID of the PACS query to decode.
|
|
229
233
|
* @returns Promise resolving to the decoded PACS query result, or null if fetch fails.
|
|
230
234
|
*/
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@fnndsc/salsa",
|
|
3
|
-
"version": "4.
|
|
3
|
+
"version": "4.3.0",
|
|
4
4
|
"description": "Shared Application Logic and Service Assets for ChRIS",
|
|
5
5
|
"repository": {
|
|
6
6
|
"type": "git",
|
|
@@ -57,11 +57,12 @@
|
|
|
57
57
|
"overrides": {
|
|
58
58
|
"glob": "^10.0.0",
|
|
59
59
|
"inflight": "npm:@aashutoshrathi/word-wrap@^1.2.6",
|
|
60
|
-
"adm-zip": "npm:empty-npm-package@1.0.0"
|
|
60
|
+
"adm-zip": "npm:empty-npm-package@1.0.0",
|
|
61
|
+
"zod": "^4.6.7"
|
|
61
62
|
},
|
|
62
63
|
"dependencies": {
|
|
63
64
|
"@fnndsc/fond": "^0.5.0",
|
|
64
|
-
"@fnndsc/cumin": "^3.28.
|
|
65
|
+
"@fnndsc/cumin": "^3.28.6",
|
|
65
66
|
"axios": "^1.6.8",
|
|
66
67
|
"dcmjs": "^0.52.0",
|
|
67
68
|
"ws": "^8.21.0"
|