@fnndsc/salsa 3.4.0 → 3.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -0,0 +1,38 @@
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/**
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* @file Read-only projection of a registered CUBE pipeline for diagram rendering.
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*
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* Resolves a pipeline, fetches its pipings and stored default parameters, and
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* returns a flat DAG. Topological `plugininstances` defaults contain piping IDs;
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* the anchor parent is removed so `joinParentIDs` carries only additional edges.
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*
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* @module
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*/
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import { Result } from '@fnndsc/cumin';
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/** One stored plugin argument default. */
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export interface PipelineDiagramArgument {
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name: string;
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value: unknown;
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}
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/** One authored piping in a registered pipeline DAG. */
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export interface PipelineDiagramNode {
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id: number;
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title: string;
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pluginName: string;
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parentID: number | null;
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joinParentIDs: number[];
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arguments: PipelineDiagramArgument[];
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}
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/** A registered pipeline projected as a flat, surface-agnostic DAG. */
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export interface PipelineDiagram {
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pipelineID: number;
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name: string;
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rootIDs: number[];
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nodes: PipelineDiagramNode[];
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}
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/**
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* Fetches a registered pipeline as a diagram-ready flat DAG.
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*
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* @param specifier - Pipeline numeric ID, exact name, slug, or unambiguous search.
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* @returns The pipeline DAG, or Err when resolution or retrieval fails.
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*/
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export declare function pipelineDiagram_get(specifier: string): Promise<Result<PipelineDiagram>>;
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@@ -0,0 +1,94 @@
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.pipelineDiagram_get = pipelineDiagram_get;
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/**
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* @file Read-only projection of a registered CUBE pipeline for diagram rendering.
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*
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* Resolves a pipeline, fetches its pipings and stored default parameters, and
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* returns a flat DAG. Topological `plugininstances` defaults contain piping IDs;
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* the anchor parent is removed so `joinParentIDs` carries only additional edges.
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*
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* @module
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*/
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const cumin_1 = require("@fnndsc/cumin");
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/**
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* Parses the additional parents stored in a `plugininstances` default.
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*
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* @param value - Comma-separated piping IDs from CUBE.
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* @param anchorID - The piping's ordinary `previous_id` parent.
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* @returns Additional parent IDs with the anchor removed.
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*/
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function joinParentIDs_parse(value, anchorID) {
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if (typeof value !== 'string')
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return [];
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return value
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.split(',')
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.map((token) => parseInt(token.trim(), 10))
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.filter((id) => !isNaN(id) && id !== anchorID);
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}
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/**
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* Fetches a registered pipeline as a diagram-ready flat DAG.
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*
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* @param specifier - Pipeline numeric ID, exact name, slug, or unambiguous search.
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* @returns The pipeline DAG, or Err when resolution or retrieval fails.
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*/
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async function pipelineDiagram_get(specifier) {
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const resolved = await (0, cumin_1.pipeline_resolve)(specifier);
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if (!resolved.ok)
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return (0, cumin_1.Err)();
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const client = await cumin_1.chrisConnection.client_get();
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if (!client) {
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cumin_1.errorStack.stack_push('error', 'Not connected to ChRIS. Cannot draw pipeline.');
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return (0, cumin_1.Err)();
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}
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try {
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const pipeline = await client.getPipeline(resolved.value.id);
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if (!pipeline) {
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cumin_1.errorStack.stack_push('error', `Pipeline ${resolved.value.id} not found.`);
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return (0, cumin_1.Err)();
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}
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const collections = await Promise.all([
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pipeline.getPluginPipings({ limit: 1000 }),
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pipeline.getDefaultParameters({ limit: 1000 }),
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]);
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const pipingList = collections[0];
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const defaultList = collections[1];
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const pipings = (0, cumin_1.items_get)(pipingList)
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.map((item) => item.data);
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const defaults = (0, cumin_1.listData_get)(defaultList);
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const defaultsByPiping = new Map();
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const joinsByPiping = new Map();
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for (const parameter of defaults) {
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const argumentsForPiping = defaultsByPiping.get(parameter.plugin_piping_id) ?? [];
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argumentsForPiping.push({ name: parameter.param_name, value: parameter.value });
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defaultsByPiping.set(parameter.plugin_piping_id, argumentsForPiping);
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if (parameter.param_name === 'plugininstances') {
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joinsByPiping.set(parameter.plugin_piping_id, parameter.value);
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}
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}
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const nodes = pipings.map((piping) => {
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const parentID = piping.previous_id ?? null;
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return {
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id: piping.id,
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title: piping.title ?? `piping_${piping.id}`,
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pluginName: piping.plugin_name ?? '?',
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parentID,
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joinParentIDs: joinParentIDs_parse(joinsByPiping.get(piping.id), parentID),
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arguments: defaultsByPiping.get(piping.id) ?? [],
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};
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});
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return (0, cumin_1.Ok)({
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pipelineID: resolved.value.id,
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name: resolved.value.name,
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rootIDs: nodes.filter((node) => node.parentID === null)
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.map((node) => node.id),
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nodes,
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});
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}
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catch (error) {
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const msg = error instanceof Error ? error.message : String(error);
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cumin_1.errorStack.stack_push('error', `pipelineDiagram_get: ${msg}`);
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return (0, cumin_1.Err)();
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}
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}
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//# sourceMappingURL=diagram.js.map
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@@ -0,0 +1 @@
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{"version":3,"file":"diagram.js","sourceRoot":"","sources":["../../src/pipelines/diagram.ts"],"names":[],"mappings":";;AA2GA,kDA8DC;AAzKD;;;;;;;;GAQG;AACH,yCAUuB;AAmEvB;;;;;;GAMG;AACH,SAAS,mBAAmB,CAAC,KAAc,EAAE,QAAuB;IAClE,IAAI,OAAO,KAAK,KAAK,QAAQ;QAAE,OAAO,EAAE,CAAC;IACzC,OAAO,KAAK;SACT,KAAK,CAAC,GAAG,CAAC;SACV,GAAG,CAAC,CAAC,KAAa,EAAU,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC;SAC1D,MAAM,CAAC,CAAC,EAAU,EAAW,EAAE,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,IAAI,EAAE,KAAK,QAAQ,CAAC,CAAC;AACpE,CAAC;AAED;;;;;GAKG;AACI,KAAK,UAAU,mBAAmB,CAAC,SAAiB;IACzD,MAAM,QAAQ,GAA2B,MAAM,IAAA,wBAAgB,EAAC,SAAS,CAAC,CAAC;IAC3E,IAAI,CAAC,QAAQ,CAAC,EAAE;QAAE,OAAO,IAAA,WAAG,GAAE,CAAC;IAE/B,MAAM,MAAM,GAA+B,MAAM,uBAAe,CAAC,UAAU,EAA2C,CAAC;IACvH,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,+CAA+C,CAAC,CAAC;QAChF,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,IAAI,CAAC;QACH,MAAM,QAAQ,GAAiC,MAAM,MAAM,CAAC,WAAW,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAC3F,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,YAAY,QAAQ,CAAC,KAAK,CAAC,EAAE,aAAa,CAAC,CAAC;YAC3E,OAAO,IAAA,WAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,WAAW,GAAiD,MAAM,OAAO,CAAC,GAAG,CAAC;YAClF,QAAQ,CAAC,gBAAgB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;YAC1C,QAAQ,CAAC,oBAAoB,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;SAC/C,CAAC,CAAC;QACH,MAAM,UAAU,GAAoB,WAAW,CAAC,CAAC,CAAC,CAAC;QACnD,MAAM,WAAW,GAA8B,WAAW,CAAC,CAAC,CAAC,CAAC;QAC9D,MAAM,OAAO,GAAiB,IAAA,iBAAS,EAAa,UAAU,CAAC;aAC5D,GAAG,CAAC,CAAC,IAAgB,EAAc,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACpD,MAAM,QAAQ,GAA2B,IAAA,oBAAY,EAAuB,WAAW,CAAC,CAAC;QACzF,MAAM,gBAAgB,GAA2C,IAAI,GAAG,EAAqC,CAAC;QAC9G,MAAM,aAAa,GAAyB,IAAI,GAAG,EAAmB,CAAC;QAEvE,KAAK,MAAM,SAAS,IAAI,QAAQ,EAAE,CAAC;YACjC,MAAM,kBAAkB,GAA8B,gBAAgB,CAAC,GAAG,CAAC,SAAS,CAAC,gBAAgB,CAAC,IAAI,EAAE,CAAC;YAC7G,kBAAkB,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,SAAS,CAAC,UAAU,EAAE,KAAK,EAAE,SAAS,CAAC,KAAK,EAAE,CAAC,CAAC;YAChF,gBAAgB,CAAC,GAAG,CAAC,SAAS,CAAC,gBAAgB,EAAE,kBAAkB,CAAC,CAAC;YACrE,IAAI,SAAS,CAAC,UAAU,KAAK,iBAAiB,EAAE,CAAC;gBAC/C,aAAa,CAAC,GAAG,CAAC,SAAS,CAAC,gBAAgB,EAAE,SAAS,CAAC,KAAK,CAAC,CAAC;YACjE,CAAC;QACH,CAAC;QAED,MAAM,KAAK,GAA0B,OAAO,CAAC,GAAG,CAAC,CAAC,MAAkB,EAAuB,EAAE;YAC3F,MAAM,QAAQ,GAAkB,MAAM,CAAC,WAAW,IAAI,IAAI,CAAC;YAC3D,OAAO;gBACL,EAAE,EAAE,MAAM,CAAC,EAAE;gBACb,KAAK,EAAE,MAAM,CAAC,KAAK,IAAI,UAAU,MAAM,CAAC,EAAE,EAAE;gBAC5C,UAAU,EAAE,MAAM,CAAC,WAAW,IAAI,GAAG;gBACrC,QAAQ;gBACR,aAAa,EAAE,mBAAmB,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,EAAE,QAAQ,CAAC;gBAC1E,SAAS,EAAE,gBAAgB,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,EAAE;aACjD,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,OAAO,IAAA,UAAE,EAAC;YACR,UAAU,EAAE,QAAQ,CAAC,KAAK,CAAC,EAAE;YAC7B,IAAI,EAAE,QAAQ,CAAC,KAAK,CAAC,IAAI;YACzB,OAAO,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC,IAAyB,EAAW,EAAE,CAAC,IAAI,CAAC,QAAQ,KAAK,IAAI,CAAC;iBAClF,GAAG,CAAC,CAAC,IAAyB,EAAU,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YACtD,KAAK;SACN,CAAC,CAAC;IACL,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,MAAM,GAAG,GAAW,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QAC3E,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,wBAAwB,GAAG,EAAE,CAAC,CAAC;QAC9D,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;AACH,CAAC"}
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* @module
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*/
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import { FilteredResourceData, ListOptions, Result, PipelineRecord, WorkflowResult } from '@fnndsc/cumin';
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export { pipelineDiagram_get, type PipelineDiagram, type PipelineDiagramArgument, type PipelineDiagramNode, } from './diagram.js';
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export type { PipelineRecord, WorkflowResult };
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/**
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* Lists registered pipelines, optionally filtered by name substring.
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package/dist/pipelines/index.js
CHANGED
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.pipelineDiagram_get = void 0;
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exports.pipelines_list = pipelines_list;
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exports.pipelines_listAll = pipelines_listAll;
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exports.pipelineFields_get = pipelineFields_get;
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@@ -19,6 +20,8 @@ exports.pipeline_run = pipeline_run;
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exports.pipeline_sourceGet = pipeline_sourceGet;
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exports.pipeline_getContent = pipeline_getContent;
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const cumin_1 = require("@fnndsc/cumin");
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var diagram_js_1 = require("./diagram.js");
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Object.defineProperty(exports, "pipelineDiagram_get", { enumerable: true, get: function () { return diagram_js_1.pipelineDiagram_get; } });
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const axios_1 = __importDefault(require("axios"));
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/**
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* Lists registered pipelines, optionally filtered by name substring.
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/pipelines/index.ts"],"names":[],"mappings":";AAAA;;;;;;;GAOG
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@fnndsc/salsa",
|
|
3
|
-
"version": "3.
|
|
3
|
+
"version": "3.5.0",
|
|
4
4
|
"description": "Shared Application Logic and Service Assets for ChRIS",
|
|
5
5
|
"repository": {
|
|
6
6
|
"type": "git",
|
|
@@ -52,7 +52,7 @@
|
|
|
52
52
|
"inflight": "npm:@aashutoshrathi/word-wrap@^1.2.6"
|
|
53
53
|
},
|
|
54
54
|
"dependencies": {
|
|
55
|
-
"@fnndsc/cumin": "^3.
|
|
55
|
+
"@fnndsc/cumin": "^3.8.0",
|
|
56
56
|
"axios": "^1.6.8"
|
|
57
57
|
}
|
|
58
58
|
}
|