@fnndsc/salsa 3.2.5 → 3.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -11,6 +11,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
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exports.pacsVfs_read = pacsVfs_read;
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exports.pacsVfs_readBinary = pacsVfs_readBinary;
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const cumin_1 = require("@fnndsc/cumin");
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+
const pacsHelpers_js_1 = require("./pacsHelpers.js");
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/**
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* Safely extracts a string value from a potentially object-wrapped DICOM tag.
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*
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@@ -50,7 +51,9 @@ async function pacsVfs_read(pathStr, queryResult_fetch) {
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const studyFolder = parts[4];
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const seriesFolder = parts[5];
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const filename = parts[6];
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-
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+
// Query folders are named `<desc>_qid:<id>[_<user>]` (see the listing
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// provider); the shared helper parses the id the same way everywhere.
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const queryId = (0, pacsHelpers_js_1.queryId_extractFromFolder)(queryFolder);
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if (Number.isNaN(queryId)) {
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cumin_1.errorStack.stack_push("error", `Invalid query ID in path '${pathStr}'`);
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return (0, cumin_1.Err)();
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"pacs_content.js","sourceRoot":"","sources":["../../../src/vfs/providers/pacs_content.ts"],"names":[],"mappings":";AAAA;;;;;;;GAOG;;
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1
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+
{"version":3,"file":"pacs_content.js","sourceRoot":"","sources":["../../../src/vfs/providers/pacs_content.ts"],"names":[],"mappings":";AAAA;;;;;;;GAOG;;AA8BH,oCAsGC;AASD,gDASC;AApJD,yCAAoF;AACpF,qDAA6D;AAE7D;;;;;GAKG;AACH,SAAS,oBAAoB,CAAC,GAAY;IACxC,IAAI,GAAG,IAAI,OAAO,GAAG,KAAK,QAAQ,EAAE,CAAC;QACnC,MAAM,MAAM,GAA4B,GAA8B,CAAC;QACvE,IAAI,OAAO,IAAI,MAAM,EAAE,CAAC;YACtB,OAAO,MAAM,CAAC,MAAM,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC;QACpC,CAAC;IACH,CAAC;IACD,OAAO,MAAM,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;AAC3B,CAAC;AAED;;;;;;;;GAQG;AACI,KAAK,UAAU,YAAY,CAChC,OAAe,EACf,iBAA8E;IAE9E,IAAI,CAAC;QACH,IAAI,aAAa,GAAW,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,GAAG,OAAO,CAAC;QAC9E,IAAI,aAAa,CAAC,MAAM,GAAG,CAAC,IAAI,aAAa,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;YAC5D,aAAa,GAAG,aAAa,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;QAC7C,CAAC;QAED,MAAM,KAAK,GAAa,aAAa,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QACjE,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,KAAK,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,MAAM,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,SAAS,EAAE,CAAC;YAC9F,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,mBAAmB,OAAO,EAAE,CAAC,CAAC;YAC7D,OAAO,IAAA,WAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,WAAW,GAAW,KAAK,CAAC,CAAC,CAAC,CAAC;QACrC,MAAM,WAAW,GAAW,KAAK,CAAC,CAAC,CAAC,CAAC;QACrC,MAAM,YAAY,GAAW,KAAK,CAAC,CAAC,CAAC,CAAC;QACtC,MAAM,QAAQ,GAAW,KAAK,CAAC,CAAC,CAAC,CAAC;QAElC,sEAAsE;QACtE,sEAAsE;QACtE,MAAM,OAAO,GAAW,IAAA,0CAAyB,EAAC,WAAW,CAAC,CAAC;QAC/D,IAAI,MAAM,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC;YAC1B,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,6BAA6B,OAAO,GAAG,CAAC,CAAC;YACxE,OAAO,IAAA,WAAG,GAAE,CAAC;QACf,CAAC;QAED,IAAI,QAAQ,KAAK,kBAAkB,EAAE,CAAC;YACpC,kBAAU,CAAC,UAAU,CACnB,OAAO,EACP,0IAA0I,CAC3I,CAAC;YACF,OAAO,IAAA,WAAG,GAAE,CAAC;QACf,CAAC;QAED,IAAI,QAAQ,KAAK,eAAe,EAAE,CAAC;YACjC,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,mBAAmB,OAAO,EAAE,CAAC,CAAC;YAC7D,OAAO,IAAA,WAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,OAAO,GAAkC,MAAM,iBAAiB,CAAC,OAAO,CAAC,CAAC;QAChF,IAAI,CAAC,OAAO,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC;YAC9B,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,cAAc,OAAO,yBAAyB,CAAC,CAAC;YAC/E,OAAO,IAAA,WAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,QAAQ,GAAW,WAAW,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAC1E,MAAM,SAAS,GAAW,YAAY,CAAC,OAAO,CAAC,UAAU,EAAE,EAAE,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAE7E,MAAM,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC;QACjC,IAAI,UAAmB,CAAC;QACxB,IAAI,WAAW,IAAI,OAAO,WAAW,KAAK,QAAQ,EAAE,CAAC;YACnD,MAAM,MAAM,GAA4B,WAAsC,CAAC;YAC/E,IAAI,SAAS,IAAI,MAAM,EAAE,CAAC;gBACxB,UAAU,GAAG,MAAM,CAAC,OAAO,CAAC;YAC9B,CAAC;iBAAM,IAAI,SAAS,IAAI,MAAM,EAAE,CAAC;gBAC/B,UAAU,GAAG,MAAM,CAAC,OAAO,CAAC;YAC9B,CAAC;iBAAM,IAAI,SAAS,IAAI,MAAM,EAAE,CAAC;gBAC/B,UAAU,GAAG,MAAM,CAAC,OAAO,CAAC;YAC9B,CAAC;iBAAM,CAAC;gBACN,UAAU,GAAG,WAAW,CAAC;YAC3B,CAAC;QACH,CAAC;aAAM,CAAC;YACN,UAAU,GAAG,WAAW,CAAC;QAC3B,CAAC;QAED,MAAM,OAAO,GAAc,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC;QACjF,MAAM,QAAQ,GAAyC,OAAqC,CAAC,IAAI,CAAC,CAAC,CAA0B,EAAE,EAAE;YAC/H,MAAM,IAAI,GAAW,oBAAoB,CAAC,CAAC,CAAC,gBAAgB,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC;YACvE,OAAO,IAAI,KAAK,QAAQ,CAAC;QAC3B,CAAC,CAAC,CAAC;QAEH,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,kBAAkB,QAAQ,8BAA8B,CAAC,CAAC;YACzF,OAAO,IAAA,WAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,WAAW,GACf,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;YAClD,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;gBAClD,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;oBACpD,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;wBAC9C,EAAE,CAAC;QAEL,MAAM,SAAS,GAAyC,WAAyC,CAAC,IAAI,CAAC,CAAC,CAA0B,EAAE,EAAE;YACpI,MAAM,IAAI,GAAW,oBAAoB,CAAC,CAAC,CAAC,iBAAiB,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC;YACxE,OAAO,IAAI,KAAK,SAAS,CAAC;QAC5B,CAAC,CAAC,CAAC;QAEH,IAAI,CAAC,SAAS,EAAE,CAAC;YACf,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,mBAAmB,SAAS,8BAA8B,CAAC,CAAC;YAC3F,OAAO,IAAA,WAAG,GAAE,CAAC;QACf,CAAC;QAED,OAAO,IAAA,UAAE,EAAC,IAAI,CAAC,SAAS,CAAC,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IAChD,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,MAAM,GAAG,GAAW,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QAC3E,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,yBAAyB,GAAG,EAAE,CAAC,CAAC;QAC/D,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;AACH,CAAC;AAED;;;;;;GAMG;AACI,KAAK,UAAU,kBAAkB,CACtC,OAAe,EACf,iBAA8E;IAE9E,MAAM,GAAG,GAAmB,MAAM,YAAY,CAAC,OAAO,EAAE,iBAAiB,CAAC,CAAC;IAC3E,IAAI,GAAG,CAAC,EAAE,EAAE,CAAC;QACX,OAAO,IAAA,UAAE,EAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC,CAAC;IAC7C,CAAC;IACD,OAAO,IAAA,WAAG,GAAE,CAAC;AACf,CAAC"}
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@@ -47,6 +47,16 @@ export declare class ProcVfsProvider implements VFSProvider {
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* Use procCache_refresh(feedID) only when a forced reload is desired.
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*/
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export declare function procFeed_ensureLoaded(feedID: number): Promise<void>;
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/**
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* Refreshes volatile job status for one feed via a single paginated LIST sweep.
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*
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* The plugin-instance list response carries `status`, so one feed-scoped list call
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* updates every node — far cheaper than per-node detail fetches. Terminal statuses
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* are frozen by {@link ProcCache.status_update} and never regress.
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*
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* @param feedID - Feed whose instance statuses should be refreshed.
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*/
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export declare function feedStatus_refresh(feedID: number): Promise<void>;
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/**
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* Background topology warm-up — single paginated sweep of all plugin instances
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* across all feeds. Replaces the per-feed fan-out that was O(feeds) round trips.
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@@ -17,6 +17,7 @@ exports.ProcVfsProvider = void 0;
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exports.feedStatus_derive = feedStatus_derive;
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exports.procPath_parse = procPath_parse;
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exports.procFeed_ensureLoaded = procFeed_ensureLoaded;
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exports.feedStatus_refresh = feedStatus_refresh;
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exports.procTopology_warmup = procTopology_warmup;
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exports.procCache_refresh = procCache_refresh;
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const cumin_1 = require("@fnndsc/cumin");
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@@ -101,6 +102,7 @@ async function feedInstances_load(feedID) {
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parentID: prevID,
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pluginName: String(inst.plugin_name),
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params: null,
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status: String(inst.status ?? 'unknown'),
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});
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}
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cache.topologyLoaded_mark(feedID);
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@@ -214,15 +216,18 @@ class ProcVfsProvider {
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const { feedID, instanceID } = procPath_parse(clean);
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// /proc/jobs/feed_N — list root instances + feed virtual files
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if (feedID !== null && instanceID === null) {
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const wasLoaded = cache.topologyLoaded_has(feedID);
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await feedInstances_ensureLoaded(feedID);
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const feed = cache.feed_get(feedID);
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if (!feed)
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return (0, cumin_1.Ok)([]);
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-
// Collect all root instance IDs to batch-fetch statuses
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const rootIDs = cache.feedRoots_get(feedID);
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-
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-
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-
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// The initial load already carried live status; only re-fetch when revisiting
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// a feed that still has active (non-terminal) nodes among those shown. One
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// feed-scoped list call updates all of them — no per-node detail fetches.
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if (wasLoaded && rootIDs.some((id) => !(0, cumin_1.status_isTerminal)(cache.instance_get(id)?.status))) {
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await feedStatus_refresh(feedID);
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}
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const items = [];
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items.push({ name: 'status', type: 'file', size: 0, owner: '', date: '' });
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items.push({ name: 'title', type: 'file', size: 0, owner: '', date: '' });
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@@ -236,21 +241,22 @@ class ProcVfsProvider {
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size: 0,
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owner: '',
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date: '',
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status:
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status: inst.status ?? 'unknown',
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});
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}
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return (0, cumin_1.Ok)(items);
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}
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// /proc/jobs/feed_N/plugin_ID — list children + virtual files
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if (feedID !== null && instanceID !== null) {
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const wasLoaded = cache.topologyLoaded_has(feedID);
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await feedInstances_ensureLoaded(feedID);
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const inst = cache.instance_get(instanceID);
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if (!inst)
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return (0, cumin_1.Ok)([]);
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const childIDs = cache.children_get(instanceID);
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-
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-
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-
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if (wasLoaded && childIDs.some((id) => !(0, cumin_1.status_isTerminal)(cache.instance_get(id)?.status))) {
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await feedStatus_refresh(feedID);
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}
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const items = [];
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items.push({ name: 'status', type: 'file', size: 0, owner: '', date: '' });
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items.push({ name: 'params', type: 'file', size: 0, owner: '', date: '' });
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@@ -265,7 +271,7 @@ class ProcVfsProvider {
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size: 0,
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owner: '',
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date: '',
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status:
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status: child.status ?? 'unknown',
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});
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}
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return (0, cumin_1.Ok)(items);
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@@ -295,8 +301,13 @@ class ProcVfsProvider {
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if (!inst)
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return (0, cumin_1.Ok)('');
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if (virtualFile === 'status') {
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// Settled jobs never change — return the cached terminal status, no call.
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if ((0, cumin_1.status_isTerminal)(inst.status))
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return (0, cumin_1.Ok)(inst.status);
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const fresh = await (0, index_js_1.job_statusFetch)(instanceID);
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-
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if (fresh.ok)
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cache.status_update(instanceID, fresh.value);
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return (0, cumin_1.Ok)(fresh.ok ? fresh.value : (inst.status ?? 'unknown'));
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}
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if (virtualFile === 'params') {
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if (inst.params === null) {
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@@ -337,7 +348,7 @@ class ProcVfsProvider {
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const statusMap = await (0, index_js_1.jobs_statusBatch)(allIDs);
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await Promise.all(allIDs.map(async (id) => {
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const s = statusMap.get(id) ?? '';
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if (!
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if (!(0, cumin_1.status_isTerminal)(s)) {
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await (0, index_js_1.job_cancel)(id);
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}
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}));
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@@ -347,7 +358,7 @@ class ProcVfsProvider {
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if (instanceID !== null) {
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const statusResult = await (0, index_js_1.job_statusFetch)(instanceID);
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const status = statusResult.ok ? statusResult.value : '';
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const isTerminal =
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const isTerminal = (0, cumin_1.status_isTerminal)(status);
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let result;
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if (!isTerminal) {
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result = await (0, index_js_1.job_cancel)(instanceID);
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@@ -386,6 +397,35 @@ async function procFeed_ensureLoaded(feedID) {
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await feedInstances_ensureLoaded(feedID);
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}
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// ── Public API ─────────────────────────────────────────────────────────────
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/**
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* Refreshes volatile job status for one feed via a single paginated LIST sweep.
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*
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* The plugin-instance list response carries `status`, so one feed-scoped list call
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* updates every node — far cheaper than per-node detail fetches. Terminal statuses
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* are frozen by {@link ProcCache.status_update} and never regress.
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*
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* @param feedID - Feed whose instance statuses should be refreshed.
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*/
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async function feedStatus_refresh(feedID) {
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const cache = (0, cumin_1.procCache_get)();
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const client = await cumin_1.chrisConnection.client_get();
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if (!client)
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return;
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const typedClient = client;
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let offset = 0;
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while (true) {
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const page = await typedClient.getPluginInstances({
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feed_id: feedID, limit: PAGE, offset,
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});
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const chunk = page.data ?? [];
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for (const inst of chunk) {
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cache.status_update(Number(inst.id), String(inst.status ?? 'unknown'));
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}
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if (chunk.length < PAGE)
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break;
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offset += PAGE;
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}
|
|
428
|
+
}
|
|
389
429
|
/**
|
|
390
430
|
* Background topology warm-up — single paginated sweep of all plugin instances
|
|
391
431
|
* across all feeds. Replaces the per-feed fan-out that was O(feeds) round trips.
|
|
@@ -428,6 +468,7 @@ async function procTopology_warmup() {
|
|
|
428
468
|
parentID: prevID,
|
|
429
469
|
pluginName: String(inst.plugin_name),
|
|
430
470
|
params: null,
|
|
471
|
+
status: String(inst.status ?? 'unknown'),
|
|
431
472
|
});
|
|
432
473
|
seenFeedIDs.add(feedID);
|
|
433
474
|
loaded++;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@fnndsc/salsa",
|
|
3
|
-
"version": "3.
|
|
3
|
+
"version": "3.3.0",
|
|
4
4
|
"description": "Shared Application Logic and Service Assets for ChRIS",
|
|
5
5
|
"repository": {
|
|
6
6
|
"type": "git",
|
|
@@ -52,7 +52,7 @@
|
|
|
52
52
|
"inflight": "npm:@aashutoshrathi/word-wrap@^1.2.6"
|
|
53
53
|
},
|
|
54
54
|
"dependencies": {
|
|
55
|
-
"@fnndsc/cumin": "^3.
|
|
55
|
+
"@fnndsc/cumin": "^3.6.0",
|
|
56
56
|
"axios": "^1.6.8"
|
|
57
57
|
}
|
|
58
58
|
}
|