@fnndsc/salsa 3.2.4 → 3.2.5

package/dist/files/fileLookup.d.ts

@@ -0,0 +1,11 @@
+import { Result } from '@fnndsc/cumin';
+/**
+ * Resolves an absolute ChRIS file path to its numeric file id.
+ *
+ * Lists the parent directory and matches on basename, tolerating the `? <name>`
+ * placeholder form the API sometimes returns.
+ *
+ * @param filePath - Absolute ChRIS file path.
+ * @returns Ok(fileId), or Err (with a message pushed to errorStack) on failure.
+ */
+export declare function fileId_atPath_resolve(filePath: string): Promise<Result<number>>;

package/dist/files/fileLookup.js

@@ -0,0 +1,80 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.fileId_atPath_resolve = fileId_atPath_resolve;
+/**
+ * @file Resolve an absolute ChRIS file path to its numeric file id.
+ *
+ * @module
+ */
+const path = __importStar(require("path"));
+const cumin_1 = require("@fnndsc/cumin");
+const index_js_1 = require("./index.js");
+/**
+ * Resolves an absolute ChRIS file path to its numeric file id.
+ *
+ * Lists the parent directory and matches on basename, tolerating the `? <name>`
+ * placeholder form the API sometimes returns.
+ *
+ * @param filePath - Absolute ChRIS file path.
+ * @returns Ok(fileId), or Err (with a message pushed to errorStack) on failure.
+ */
+async function fileId_atPath_resolve(filePath) {
+    const dir = path.posix.dirname(filePath);
+    const name = path.posix.basename(filePath);
+    const group = await (0, index_js_1.files_getGroup)('files', dir);
+    if (!group) {
+        return (0, cumin_1.Err)();
+    }
+    const results = await group.asset.resources_getAll();
+    if (!results || !results.tableData) {
+        cumin_1.errorStack.stack_push('error', `No files found in directory: ${dir}`);
+        return (0, cumin_1.Err)();
+    }
+    const file = results.tableData.find((f) => {
+        const basename = path.posix.basename(f.fname || '');
+        return basename === name || basename === `? ${name}`;
+    });
+    if (!file) {
+        cumin_1.errorStack.stack_push('error', `File not found: ${name} in ${dir}`);
+        return (0, cumin_1.Err)();
+    }
+    if (typeof file.id !== 'number') {
+        cumin_1.errorStack.stack_push('error', `File has no valid ID: ${name}`);
+        return (0, cumin_1.Err)();
+    }
+    return (0, cumin_1.Ok)(file.id);
+}
+//# sourceMappingURL=fileLookup.js.map

package/dist/files/fileLookup.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"fileLookup.js","sourceRoot":"","sources":["../../src/files/fileLookup.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAgCA,sDA+BC;AA/DD;;;;GAIG;AACH,2CAA6B;AAC7B,yCAQuB;AACvB,yCAA4C;AAQ5C;;;;;;;;GAQG;AACI,KAAK,UAAU,qBAAqB,CAAC,QAAgB;IAC1D,MAAM,GAAG,GAAW,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC;IACjD,MAAM,IAAI,GAAW,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;IAEnD,MAAM,KAAK,GAAqD,MAAM,IAAA,yBAAc,EAAC,OAAO,EAAE,GAAG,CAAC,CAAC;IACnG,IAAI,CAAC,KAAK,EAAE,CAAC;QACX,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,MAAM,OAAO,GAAgC,MAAM,KAAK,CAAC,KAAK,CAAC,gBAAgB,EAAE,CAAC;IAClF,IAAI,CAAC,OAAO,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC;QACnC,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,gCAAgC,GAAG,EAAE,CAAC,CAAC;QACtE,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,MAAM,IAAI,GAAyB,OAAO,CAAC,SAAuB,CAAC,IAAI,CAAC,CAAC,CAAU,EAAE,EAAE;QACrF,MAAM,QAAQ,GAAW,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC,CAAC;QAC5D,OAAO,QAAQ,KAAK,IAAI,IAAI,QAAQ,KAAK,KAAK,IAAI,EAAE,CAAC;IACvD,CAAC,CAAC,CAAC;IAEH,IAAI,CAAC,IAAI,EAAE,CAAC;QACV,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,mBAAmB,IAAI,OAAO,GAAG,EAAE,CAAC,CAAC;QACpE,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,IAAI,OAAO,IAAI,CAAC,EAAE,KAAK,QAAQ,EAAE,CAAC;QAChC,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,yBAAyB,IAAI,EAAE,CAAC,CAAC;QAChE,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,OAAO,IAAA,UAAE,EAAC,IAAI,CAAC,EAAE,CAAC,CAAC;AACrB,CAAC"}

package/dist/files/pacs_content.d.ts

@@ -8,7 +8,6 @@ import { Result } from "@fnndsc/cumin";
  * Fetches the content of a PACS file (DICOM).
  *
  * Path structure: /SERVICES/PACS/<service>/<patient>/<study>/<series>/<file>.dcm
- * Example: /SERVICES/PACS/PACSDCM/7654321-EVANS-19861111/.../0168-1.3...dcm
  *
  * PACS files appear in directory listings but must be downloaded through
  * the PACSFile API instead of the regular file download endpoint.

package/dist/files/pacs_content.js

@@ -4,50 +4,15 @@
  *
  * @module
  */
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.fileContent_getPACS = fileContent_getPACS;
 exports.fileContent_getPACSBinary = fileContent_getPACSBinary;
-const path = __importStar(require("path"));
 const cumin_1 = require("@fnndsc/cumin");
-const index_1 = require("./index");
+const fileLookup_js_1 = require("./fileLookup.js");
 /**
  * Fetches the content of a PACS file (DICOM).
  *
  * Path structure: /SERVICES/PACS/<service>/<patient>/<study>/<series>/<file>.dcm
- * Example: /SERVICES/PACS/PACSDCM/7654321-EVANS-19861111/.../0168-1.3...dcm
  *
  * PACS files appear in directory listings but must be downloaded through
  * the PACSFile API instead of the regular file download endpoint.
@@ -56,31 +21,11 @@ const index_1 = require("./index");
  * @returns A Result containing the file content as a string, or an error.
  */
 async function fileContent_getPACS(filePath) {
-    const dir = path.posix.dirname(filePath);
-    const name = path.posix.basename(filePath);
-    const group = await (0, index_1.files_getGroup)('files', dir);
-    if (!group) {
-        return (0, cumin_1.Err)();
-    }
-    const results = await group.asset.resources_getAll();
-    if (!results || !results.tableData) {
-        cumin_1.errorStack.stack_push("error", `No files found in PACS directory: ${dir}`);
-        return (0, cumin_1.Err)();
-    }
-    const file = results.tableData.find((f) => {
-        const fname = f.fname || '';
-        const basename = path.posix.basename(fname);
-        return basename === name || basename === `? ${name}`;
-    });
-    if (!file) {
-        cumin_1.errorStack.stack_push("error", `PACS file not found: ${name} in ${dir}`);
-        return (0, cumin_1.Err)();
-    }
-    if (typeof file.id !== 'number') {
-        cumin_1.errorStack.stack_push("error", `PACS file has no valid ID: ${name}`);
+    const idResult = await (0, fileLookup_js_1.fileId_atPath_resolve)(filePath);
+    if (!idResult.ok) {
         return (0, cumin_1.Err)();
     }
-    return await (0, cumin_1.pacsFile_getText)(file.id);
+    return await (0, cumin_1.pacsFile_getText)(idResult.value);
 }
 /**
  * Fetches the binary content of a PACS file (DICOM).
@@ -92,30 +37,10 @@ async function fileContent_getPACS(filePath) {
  * @returns A Result containing the file content as a Buffer, or an error.
  */
 async function fileContent_getPACSBinary(filePath) {
-    const dir = path.posix.dirname(filePath);
-    const name = path.posix.basename(filePath);
-    const group = await (0, index_1.files_getGroup)('files', dir);
-    if (!group) {
-        return (0, cumin_1.Err)();
-    }
-    const results = await group.asset.resources_getAll();
-    if (!results || !results.tableData) {
-        cumin_1.errorStack.stack_push("error", `No files found in PACS directory: ${dir}`);
-        return (0, cumin_1.Err)();
-    }
-    const file = results.tableData.find((f) => {
-        const fname = f.fname || '';
-        const basename = path.posix.basename(fname);
-        return basename === name || basename === `? ${name}`;
-    });
-    if (!file) {
-        cumin_1.errorStack.stack_push("error", `PACS file not found: ${name} in ${dir}`);
-        return (0, cumin_1.Err)();
-    }
-    if (typeof file.id !== 'number') {
-        cumin_1.errorStack.stack_push("error", `PACS file has no valid ID: ${name}`);
+    const idResult = await (0, fileLookup_js_1.fileId_atPath_resolve)(filePath);
+    if (!idResult.ok) {
         return (0, cumin_1.Err)();
     }
-    return await (0, cumin_1.pacsFile_getBlob)(file.id);
+    return await (0, cumin_1.pacsFile_getBlob)(idResult.value);
 }
 //# sourceMappingURL=pacs_content.js.map

package/dist/files/pacs_content.js.map

@@ -1 +1 @@
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+{"version":3,"file":"pacs_content.js","sourceRoot":"","sources":["../../src/files/pacs_content.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;AAgBH,kDAMC;AAWD,8DAMC;AArCD,yCAAgF;AAChF,mDAAwD;AAExD;;;;;;;;;;GAUG;AACI,KAAK,UAAU,mBAAmB,CAAC,QAAgB;IACxD,MAAM,QAAQ,GAAmB,MAAM,IAAA,qCAAqB,EAAC,QAAQ,CAAC,CAAC;IACvE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IACD,OAAO,MAAM,IAAA,wBAAgB,EAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;AAChD,CAAC;AAED;;;;;;;;GAQG;AACI,KAAK,UAAU,yBAAyB,CAAC,QAAgB;IAC9D,MAAM,QAAQ,GAAmB,MAAM,IAAA,qCAAqB,EAAC,QAAQ,CAAC,CAAC;IACvE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IACD,OAAO,MAAM,IAAA,wBAAgB,EAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;AAChD,CAAC"}

package/dist/files/regular_content.js

@@ -4,46 +4,12 @@
  *
  * @module
  */
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.fileContent_getRegularStream = fileContent_getRegularStream;
 exports.fileContent_getRegular = fileContent_getRegular;
 exports.fileContent_getRegularBinary = fileContent_getRegularBinary;
-const path = __importStar(require("path"));
 const cumin_1 = require("@fnndsc/cumin");
-const index_1 = require("./index");
+const fileLookup_js_1 = require("./fileLookup.js");
 /**
  * Views content of a file in ChRIS by its ID.
  * This is a helper function, not directly exported to avoid circular deps.
@@ -66,31 +32,11 @@ async function files_view(fileId) {
  * @returns A Result containing the stream/blob and optional size metadata.
  */
 async function fileContent_getRegularStream(filePath) {
-    const dir = path.posix.dirname(filePath);
-    const name = path.posix.basename(filePath);
-    const group = await (0, index_1.files_getGroup)("files", dir);
-    if (!group) {
-        return (0, cumin_1.Err)();
-    }
-    const results = await group.asset.resources_getAll();
-    if (!results || !results.tableData) {
-        cumin_1.errorStack.stack_push("error", `No files found in directory: ${dir}`);
-        return (0, cumin_1.Err)();
-    }
-    const file = results.tableData.find((f) => {
-        const fname = f.fname || "";
-        const basename = path.posix.basename(fname);
-        return basename === name || basename === `? ${name}`;
-    });
-    if (!file) {
-        cumin_1.errorStack.stack_push("error", `File not found: ${name} in ${dir}`);
+    const idResult = await (0, fileLookup_js_1.fileId_atPath_resolve)(filePath);
+    if (!idResult.ok) {
         return (0, cumin_1.Err)();
     }
-    if (typeof file.id !== "number") {
-        cumin_1.errorStack.stack_push("error", `File has no valid ID: ${name}`);
-        return (0, cumin_1.Err)();
-    }
-    const streamResult = await cumin_1.chrisIO.file_downloadStream(file.id);
+    const streamResult = await cumin_1.chrisIO.file_downloadStream(idResult.value);
     if (!streamResult.ok) {
         return (0, cumin_1.Err)();
     }
@@ -103,33 +49,12 @@ async function fileContent_getRegularStream(filePath) {
  * @returns A Result containing the file content as a string, or an error.
  */
 async function fileContent_getRegular(filePath) {
-    const dir = path.posix.dirname(filePath);
-    const name = path.posix.basename(filePath);
-    const group = await (0, index_1.files_getGroup)('files', dir);
-    if (!group) {
+    const idResult = await (0, fileLookup_js_1.fileId_atPath_resolve)(filePath);
+    if (!idResult.ok) {
         return (0, cumin_1.Err)();
     }
-    const results = await group.asset.resources_getAll();
-    if (!results || !results.tableData) {
-        cumin_1.errorStack.stack_push("error", `No files found in directory: ${dir}`);
-        return (0, cumin_1.Err)();
-    }
-    const file = results.tableData.find((f) => {
-        const fname = f.fname || '';
-        const basename = path.posix.basename(fname);
-        return basename === name || basename === `? ${name}`;
-    });
-    if (!file) {
-        cumin_1.errorStack.stack_push("error", `File not found: ${name} in ${dir}`);
-        return (0, cumin_1.Err)();
-    }
-    if (typeof file.id !== 'number') {
-        cumin_1.errorStack.stack_push("error", `File has no valid ID: ${name}`);
-        return (0, cumin_1.Err)();
-    }
-    const filesViewResult = await files_view(file.id);
+    const filesViewResult = await files_view(idResult.value);
     if (!filesViewResult.ok) {
-        // The error is already pushed by files_view or chrisIO.file_download
         return (0, cumin_1.Err)();
     }
     return (0, cumin_1.Ok)(filesViewResult.value.toString('utf-8'));
@@ -143,33 +68,12 @@ async function fileContent_getRegular(filePath) {
  * @returns A Result containing the file content as a Buffer, or an error.
  */
 async function fileContent_getRegularBinary(filePath) {
-    const dir = path.posix.dirname(filePath);
-    const name = path.posix.basename(filePath);
-    const group = await (0, index_1.files_getGroup)('files', dir);
-    if (!group) {
-        return (0, cumin_1.Err)();
-    }
-    const results = await group.asset.resources_getAll();
-    if (!results || !results.tableData) {
-        cumin_1.errorStack.stack_push("error", `No files found in directory: ${dir}`);
-        return (0, cumin_1.Err)();
-    }
-    const file = results.tableData.find((f) => {
-        const fname = f.fname || '';
-        const basename = path.posix.basename(fname);
-        return basename === name || basename === `? ${name}`;
-    });
-    if (!file) {
-        cumin_1.errorStack.stack_push("error", `File not found: ${name} in ${dir}`);
-        return (0, cumin_1.Err)();
-    }
-    if (typeof file.id !== 'number') {
-        cumin_1.errorStack.stack_push("error", `File has no valid ID: ${name}`);
+    const idResult = await (0, fileLookup_js_1.fileId_atPath_resolve)(filePath);
+    if (!idResult.ok) {
         return (0, cumin_1.Err)();
     }
-    const filesViewResult = await files_view(file.id);
+    const filesViewResult = await files_view(idResult.value);
     if (!filesViewResult.ok) {
-        // The error is already pushed by files_view or chrisIO.file_download
         return (0, cumin_1.Err)();
     }
     return (0, cumin_1.Ok)(filesViewResult.value);

package/dist/files/regular_content.js.map

@@ -1 +1 @@
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+{"version":3,"file":"regular_content.js","sourceRoot":"","sources":["../../src/files/regular_content.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;AA2BH,oEAeC;AAQD,wDAYC;AAUD,oEAYC;AAlFD,yCAAyD;AACzD,mDAAwD;AAExD;;;;;;GAMG;AACH,KAAK,UAAU,UAAU,CAAC,MAAc;IACtC,MAAM,MAAM,GAAkB,MAAM,eAAO,CAAC,aAAa,CAAC,MAAM,CAAC,CAAC;IAClE,IAAI,MAAM,KAAK,IAAI,EAAE,CAAC;QAClB,4DAA4D;QAC5D,OAAO,IAAA,WAAG,GAAE,CAAC;IACjB,CAAC;IACD,OAAO,IAAA,UAAE,EAAC,MAAM,CAAC,CAAC;AACpB,CAAC;AAED;;;;;GAKG;AACI,KAAK,UAAU,4BAA4B,CAChD,QAAgB;IAEhB,MAAM,QAAQ,GAAmB,MAAM,IAAA,qCAAqB,EAAC,QAAQ,CAAC,CAAC;IACvE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,MAAM,YAAY,GAChB,MAAM,eAAO,CAAC,mBAAmB,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;IACpD,IAAI,CAAC,YAAY,CAAC,EAAE,EAAE,CAAC;QACrB,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,OAAO,IAAA,UAAE,EAAC,YAAY,CAAC,KAAK,CAAC,CAAC;AAChC,CAAC;AAED;;;;;GAKG;AACI,KAAK,UAAU,sBAAsB,CAAC,QAAgB;IAC3D,MAAM,QAAQ,GAAmB,MAAM,IAAA,qCAAqB,EAAC,QAAQ,CAAC,CAAC;IACvE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,MAAM,eAAe,GAAmB,MAAM,UAAU,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;IACzE,IAAI,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC;QACxB,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,OAAO,IAAA,UAAE,EAAC,eAAe,CAAC,KAAK,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC;AACrD,CAAC;AAED;;;;;;;GAOG;AACI,KAAK,UAAU,4BAA4B,CAAC,QAAgB;IACjE,MAAM,QAAQ,GAAmB,MAAM,IAAA,qCAAqB,EAAC,QAAQ,CAAC,CAAC;IACvE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,MAAM,eAAe,GAAmB,MAAM,UAAU,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;IACzE,IAAI,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC;QACxB,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IAED,OAAO,IAAA,UAAE,EAAC,eAAe,CAAC,KAAK,CAAC,CAAC;AACnC,CAAC"}

package/dist/vfs/providers/native.js

@@ -12,34 +12,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.NativeVfsProvider = void 0;
 const cumin_1 = require("@fnndsc/cumin");
+const sort_js_1 = require("../sort.js");
 const index_js_1 = require("../../files/index.js");
 const path_1 = __importDefault(require("path"));
-/**
- * Standard sort utility for VFS items.
- *
- * @param items - Items list to sort.
- * @param sortField - Field to sort by.
- * @param reverse - Whether to reverse sort order.
- * @returns Sorted array.
- */
-function vfs_sortItems(items, sortField, reverse) {
-    const field = sortField || "name";
-    const sorted = [...items].sort((a, b) => {
-        const valA = a[field];
-        const valB = b[field];
-        if (typeof valA === "string" && typeof valB === "string") {
-            return valA.localeCompare(valB);
-        }
-        if (typeof valA === "number" && typeof valB === "number") {
-            return valA - valB;
-        }
-        return 0;
-    });
-    if (reverse) {
-        sorted.reverse();
-    }
-    return sorted;
-}
 /**
  * Native ChRIS filesystem provider operating on absolute CUBE folders.
  */
@@ -95,7 +70,7 @@ class NativeVfsProvider {
             if (linksResult.status === "fulfilled" && linksResult.value?.tableData) {
                 linksResult.value.tableData.forEach((l) => items.push(mapToItem(l, "link")));
             }
-            const sorted = vfs_sortItems(items, options?.sort, options?.reverse);
+            const sorted = (0, sort_js_1.vfsItems_sort)(items, options?.sort, options?.reverse);
             return (0, cumin_1.Ok)(sorted);
         }
         catch (error) {

package/dist/vfs/providers/native.js.map

@@ -1 +1 @@
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+{"version":3,"file":"native.js","sourceRoot":"","sources":["../../../src/vfs/providers/native.ts"],"names":[],"mappings":";AAAA;;;;;;GAMG;;;;;;AAEH,yCAA4D;AAE5D,wCAA2C;AAC3C,mDAI8B;AAC9B,gDAAwB;AAaxB;;GAEG;AACH,MAAa,iBAAiB;IAC5B,iCAAiC;IACjC,MAAM,GAAG,EAAE,CAAC;IAEZ;;;;;OAKG;IACH,KAAK,CAAC,IAAI,CACR,OAAe,EACf,OAA0E;QAE1E,IAAI,CAAC;YACH,MAAM,SAAS,GAAG,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;YAC7C,MAAM,YAAY,GAAW,OAAO,IAAI,GAAG,CAAC;YAE5C,4CAA4C;YAC5C,MAAM,OAAO,GAAG,MAAM,OAAO,CAAC,UAAU,CAAC;gBACvC,IAAA,wBAAa,EAAC,SAAS,EAAE,MAAM,EAAE,YAAY,CAAC;gBAC9C,IAAA,wBAAa,EAAC,SAAS,EAAE,OAAO,EAAE,YAAY,CAAC;gBAC/C,IAAA,wBAAa,EAAC,SAAS,EAAE,OAAO,EAAE,YAAY,CAAC;aAChD,CAAC,CAAC;YAEH,MAAM,CAAC,UAAU,EAAE,WAAW,EAAE,WAAW,CAAC,GAAG,OAAO,CAAC;YACvD,MAAM,KAAK,GAAc,EAAE,CAAC;YAE5B,MAAM,SAAS,GAAG,CAChB,GAAsB,EACtB,IAAqC,EAC5B,EAAE;gBACX,IAAI,IAAI,GAAW,GAAG,CAAC,KAAK,IAAI,GAAG,CAAC,IAAI,IAAI,EAAE,CAAC;gBAC/C,IAAI,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;oBACvB,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,IAAI,IAAI,CAAC;gBACvC,CAAC;gBACD,IAAI,IAAI,KAAK,MAAM,IAAI,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC,EAAE,CAAC;oBACnD,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;gBAC5B,CAAC;gBACD,MAAM,UAAU,GAAuB,GAAG,CAAC,IAAI;oBAC7C,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC;wBACxB,CAAC,CAAC,GAAG,CAAC,IAAI;wBACV,CAAC,CAAC,GAAG,GAAG,GAAG,CAAC,IAAI;oBAClB,CAAC,CAAC,SAAS,CAAC;gBAEd,OAAO;oBACL,IAAI;oBACJ,IAAI;oBACJ,IAAI,EAAE,GAAG,CAAC,KAAK,IAAI,CAAC;oBACpB,KAAK,EAAE,GAAG,CAAC,cAAc,IAAI,SAAS;oBACtC,IAAI,EAAE,GAAG,CAAC,aAAa,IAAI,EAAE;oBAC7B,MAAM,EAAE,UAAU;iBACnB,CAAC;YACJ,CAAC,CAAC;YAEF,IAAI,UAAU,CAAC,MAAM,KAAK,WAAW,IAAI,UAAU,CAAC,KAAK,EAAE,SAAS,EAAE,CAAC;gBACrE,UAAU,CAAC,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAC,CAAU,EAAE,EAAE,CAChD,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,CAAsB,EAAE,KAAK,CAAC,CAAC,CACrD,CAAC;YACJ,CAAC;YAED,IAAI,WAAW,CAAC,MAAM,KAAK,WAAW,IAAI,WAAW,CAAC,KAAK,EAAE,SAAS,EAAE,CAAC;gBACvE,WAAW,CAAC,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAC,CAAU,EAAE,EAAE,CACjD,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,CAAsB,EAAE,MAAM,CAAC,CAAC,CACtD,CAAC;YACJ,CAAC;YAED,IAAI,WAAW,CAAC,MAAM,KAAK,WAAW,IAAI,WAAW,CAAC,KAAK,EAAE,SAAS,EAAE,CAAC;gBACvE,WAAW,CAAC,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAC,CAAU,EAAE,EAAE,CACjD,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,CAAsB,EAAE,MAAM,CAAC,CAAC,CACtD,CAAC;YACJ,CAAC;YAED,MAAM,MAAM,GAAc,IAAA,uBAAa,EAAC,KAAK,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;YAChF,OAAO,IAAA,UAAE,EAAC,MAAM,CAAC,CAAC;QACpB,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,MAAM,GAAG,GAAW,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YAC3E,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,2BAA2B,GAAG,EAAE,CAAC,CAAC;YACjE,OAAO,IAAA,WAAG,GAAE,CAAC;QACf,CAAC;IACH,CAAC;IAED;;;;;;OAMG;IACH,KAAK,CAAC,EAAE,CAAC,GAAW,EAAE,IAAY,EAAE,OAAkB;QACpD,IAAI,CAAC;YACH,MAAM,QAAQ,GAAY,MAAM,eAAe,CAAC,GAAG,CAAC,CAAC;YACrD,IAAI,QAAQ,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC;gBACnC,kBAAU,CAAC,UAAU,CACnB,OAAO,EACP,2DAA2D,GAAG,EAAE,CACjE,CAAC;gBACF,OAAO,KAAK,CAAC;YACf,CAAC;YAED,MAAM,SAAS,GAAY,MAAM,eAAe,CAAC,IAAI,CAAC,CAAC;YACvD,MAAM,YAAY,GAAY,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC;YACjD,MAAM,SAAS,GAAG,CAAC,SAAS,IAAI,YAAY,CAAC;gBAC3C,CAAC,CAAC,cAAI,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,EAAE,cAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC;gBACjD,CAAC,CAAC,IAAI,CAAC;YAET,IAAI,OAAO,CAAC,SAAS,EAAE,CAAC;gBACtB,OAAO,MAAM,IAAA,gCAAqB,EAAC,GAAG,EAAE,SAAS,CAAC,CAAC;YACrD,CAAC;iBAAM,CAAC;gBACN,OAAO,MAAM,IAAA,qBAAU,EAAC,GAAG,EAAE,SAAS,CAAC,CAAC;YAC1C,CAAC;QACH,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,MAAM,GAAG,GAAW,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YAC3E,kBAAU,CAAC,UAAU,CAAC,OAAO,EAAE,2BAA2B,GAAG,EAAE,CAAC,CAAC;YACjE,OAAO,KAAK,CAAC;QACf,CAAC;IACH,CAAC;CACF;AArHD,8CAqHC;AAED;;;;;GAKG;AACH,KAAK,UAAU,eAAe,CAAC,UAAkB;IAC/C,MAAM,MAAM,GAAW,cAAI,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC;IACtD,MAAM,IAAI,GAAW,cAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC;IACrD,IAAI,CAAC;QACH,MAAM,OAAO,GAAG,MAAM,IAAA,wBAAa,EAAC,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,EAAE,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;QAChF,IAAI,CAAC,OAAO,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC;YACnC,OAAO,KAAK,CAAC;QACf,CAAC;QACD,OAAO,OAAO,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,KAA8B,EAAE,EAAE;YAC/D,MAAM,SAAS,GACb,OAAO,KAAK,CAAC,IAAI,KAAK,QAAQ,IAAI,KAAK,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC;gBACrD,CAAC,CAAC,KAAK,CAAC,IAAI;gBACZ,CAAC,CAAC,OAAO,KAAK,CAAC,KAAK,KAAK,QAAQ;oBAC/B,CAAC,CAAC,KAAK,CAAC,KAAK;oBACb,CAAC,CAAC,EAAE,CAAC;YACX,OAAO,SAAS,KAAK,UAAU,IAAI,cAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,KAAK,IAAI,CAAC;QAC7E,CAAC,CAAC,CAAC;IACL,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC"}

package/dist/vfs/providers/pacs.js

@@ -12,33 +12,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.PacsVfsProvider = void 0;
 const cumin_1 = require("@fnndsc/cumin");
+const sort_js_1 = require("../sort.js");
 const pacsHelpers_js_1 = require("./pacsHelpers.js");
 const index_js_1 = require("../../pacs/index.js");
 const index_js_2 = require("../../files/index.js");
 const path_1 = __importDefault(require("path"));
 const chalk_1 = __importDefault(require("chalk"));
 const pacs_content_js_1 = require("./pacs_content.js");
-/**
- * Standard sort utility for VFS items.
- */
-function items_sort(items, sortField, reverse) {
-    const field = sortField || "name";
-    const sorted = [...items].sort((a, b) => {
-        const valA = a[field];
-        const valB = b[field];
-        if (typeof valA === "string" && typeof valB === "string") {
-            return valA.localeCompare(valB);
-        }
-        if (typeof valA === "number" && typeof valB === "number") {
-            return valA - valB;
-        }
-        return 0;
-    });
-    if (reverse) {
-        sorted.reverse();
-    }
-    return sorted;
-}
 /**
  * Resolves the folder path on ChRIS storage for a retrieved series.
  *
@@ -99,7 +79,7 @@ async function queries_list(options) {
             date: creationDate,
         };
     });
-    return (0, cumin_1.Ok)(items_sort(items, options?.sort, options?.reverse));
+    return (0, cumin_1.Ok)((0, sort_js_1.vfsItems_sort)(items, options?.sort, options?.reverse));
 }
 function studies_list(studies, options) {
     const items = studies.map((studyObj, idx) => {
@@ -114,7 +94,7 @@ function studies_list(studies, options) {
             date: "",
         };
     });
-    return (0, cumin_1.Ok)(items_sort(items, options?.sort, options?.reverse));
+    return (0, cumin_1.Ok)((0, sort_js_1.vfsItems_sort)(items, options?.sort, options?.reverse));
 }
 function series_list(seriesArr, options) {
     const items = seriesArr.map((seriesObj, idx) => {
@@ -129,7 +109,7 @@ function series_list(seriesArr, options) {
             date: "",
         };
     });
-    return (0, cumin_1.Ok)(items_sort(items, options?.sort, options?.reverse));
+    return (0, cumin_1.Ok)((0, sort_js_1.vfsItems_sort)(items, options?.sort, options?.reverse));
 }
 function seriesFiles_list(seriesObj) {
     return (0, cumin_1.Ok)([

package/dist/vfs/providers/pacs.js.map

@@ -1 +1 @@
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package/dist/vfs/sort.d.ts

@@ -0,0 +1,18 @@
+/**
+ * @file Non-destructive sorting helper for VFS items.
+ *
+ * @module
+ */
+import { VFSItem } from './provider.js';
+/**
+ * Sorts VFS items by a field (name/size/date/owner), non-destructively.
+ *
+ * Strings are compared with localeCompare, numbers numerically; mismatched or
+ * unsupported types are left in their original relative order.
+ *
+ * @param items - Items to sort.
+ * @param sortField - Field to sort by (default 'name').
+ * @param reverse - Whether to reverse the resulting order.
+ * @returns A new sorted array.
+ */
+export declare function vfsItems_sort(items: VFSItem[], sortField?: 'name' | 'size' | 'date' | 'owner', reverse?: boolean): VFSItem[];

package/dist/vfs/sort.js

@@ -0,0 +1,33 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.vfsItems_sort = vfsItems_sort;
+/**
+ * Sorts VFS items by a field (name/size/date/owner), non-destructively.
+ *
+ * Strings are compared with localeCompare, numbers numerically; mismatched or
+ * unsupported types are left in their original relative order.
+ *
+ * @param items - Items to sort.
+ * @param sortField - Field to sort by (default 'name').
+ * @param reverse - Whether to reverse the resulting order.
+ * @returns A new sorted array.
+ */
+function vfsItems_sort(items, sortField, reverse) {
+    const field = sortField || 'name';
+    const sorted = [...items].sort((a, b) => {
+        const valA = a[field];
+        const valB = b[field];
+        if (typeof valA === 'string' && typeof valB === 'string') {
+            return valA.localeCompare(valB);
+        }
+        if (typeof valA === 'number' && typeof valB === 'number') {
+            return valA - valB;
+        }
+        return 0;
+    });
+    if (reverse) {
+        sorted.reverse();
+    }
+    return sorted;
+}
+//# sourceMappingURL=sort.js.map

package/dist/vfs/sort.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"sort.js","sourceRoot":"","sources":["../../src/vfs/sort.ts"],"names":[],"mappings":";;AAkBA,sCAqBC;AAhCD;;;;;;;;;;GAUG;AACH,SAAgB,aAAa,CAC3B,KAAgB,EAChB,SAA8C,EAC9C,OAAiB;IAEjB,MAAM,KAAK,GAAkB,SAAS,IAAI,MAAM,CAAC;IACjD,MAAM,MAAM,GAAc,CAAC,GAAG,KAAK,CAAC,CAAC,IAAI,CAAC,CAAC,CAAU,EAAE,CAAU,EAAE,EAAE;QACnE,MAAM,IAAI,GAA2B,CAAC,CAAC,KAAK,CAAC,CAAC;QAC9C,MAAM,IAAI,GAA2B,CAAC,CAAC,KAAK,CAAC,CAAC;QAC9C,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;YACzD,OAAO,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;QAClC,CAAC;QACD,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;YACzD,OAAO,IAAI,GAAG,IAAI,CAAC;QACrB,CAAC;QACD,OAAO,CAAC,CAAC;IACX,CAAC,CAAC,CAAC;IACH,IAAI,OAAO,EAAE,CAAC;QACZ,MAAM,CAAC,OAAO,EAAE,CAAC;IACnB,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fnndsc/salsa",
-  "version": "3.2.4",
+  "version": "3.2.5",
   "description": "Shared Application Logic and Service Assets for ChRIS",
   "repository": {
     "type": "git",
@@ -40,18 +40,19 @@
     "@babel/core": "^7.28.5",
     "@babel/preset-env": "^7.28.5",
     "@babel/preset-typescript": "^7.28.5",
-    "@types/jest": "^29.5.12",
-    "babel-jest": "^29.7.0",
-    "jest": "^29.7.0",
-    "ts-jest": "^29.1.5",
-    "typescript": "^5.0.0"
+    "@types/jest": "^30.0.0",
+    "babel-jest": "^30.2.0",
+    "jest": "^30.2.0",
+    "ts-jest": "^29.4.5",
+    "typescript": "^5.0.0",
+    "@types/node": "^22.0.0"
   },
   "overrides": {
     "glob": "^10.0.0",
     "inflight": "npm:@aashutoshrathi/word-wrap@^1.2.6"
   },
   "dependencies": {
-    "@fnndsc/cumin": "^3.2.4",
+    "@fnndsc/cumin": "^3.3.0",
     "axios": "^1.6.8"
   }
 }