@fnndsc/salsa 3.18.2 → 3.19.0

package/dist/dag/feedData.d.ts

@@ -0,0 +1,104 @@
+/**
+ * @file What a feed's data is, read once from the first file its root made.
+ *
+ * A feed begins from data — a DICOM series pulled from a PACS, a NIfTI
+ * volume, a folder of JPEGs — and a space arranged by data needs to know
+ * which, and for DICOM the modality and the series description. The index
+ * learns it once per feed, after the topology sweep, from the root job's
+ * output: the first file there, by name, descending into a folder when the
+ * output is one; its extension names the format, and for DICOM one header
+ * read gives the modality and description. The facts are persisted with the
+ * feed's checkpoint shard, so a feed is read once, ever — never at view time.
+ *
+ * What cannot be known yet (a root still running, a read that failed) is
+ * left unset and tried again on the next sweep; what is known to be absent
+ * (no output, a root that failed) is recorded as `unknown`, with the reason.
+ *
+ * @module
+ */
+import { type ProcCache, type ProcFeedDataFacts } from '@fnndsc/cumin';
+import type { VFSItem } from '../vfs/provider.js';
+import { type DicomTagSet } from '../dicom/tags.js';
+/**
+ * This reader's version, written into every record it makes: facts from an
+ * older reader are read again, so a better reading reaches feeds read before
+ * it. Raise it whenever what is read, or how, changes.
+ */
+export declare const DATA_FACTS_READER: number;
+/** Feeds read at once by a sweep: a feed costs a few CUBE round trips, and one at a time took three seconds each. */
+export declare const DATA_FACTS_IN_FLIGHT: number;
+/**
+ * How long one feed may take: a read that never answers (a link to a file
+ * that went away, a stalled download) must not hold a worker for good —
+ * four such hangs once stopped a whole sweep. The feed is tried again later.
+ */
+export declare const DATA_FACTS_FEED_MS: number;
+/**
+ * The pause between a sweep's rounds. A sweep once ran a single round, and
+ * every feed it could not answer yet — a header that failed once, a read
+ * that ran out of time — stayed unread for as long as the daemon lived:
+ * 199 of 709 feeds, found by watching the count stop.
+ */
+export declare const DATA_FACTS_ROUND_PAUSE_MS: number;
+/**
+ * How the sweep reads: injected, so it is testable without a daemon, and so
+ * the provider that owns output paths can hand its reader in.
+ *
+ * @property outputPath - A job's output folder, or null when it has none.
+ * @property list - A folder's first entries; null when it is not there,
+ *   `refused` when the store will not show it to this identity (a shared
+ *   feed's data in someone else's uploads).
+ * @property header - A DICOM file's tags, or null when it is not one.
+ */
+export interface DataFactsIO {
+    outputPath(instanceID: number): Promise<string | null>;
+    list(path: string): Promise<VFSItem[] | null | 'refused'>;
+    header(path: string): Promise<DicomTagSet | null>;
+}
+/**
+ * The reader the daemon uses, given the provider's output-path reader.
+ *
+ * @param outputPath - Reads a job's output folder.
+ * @returns The IO.
+ */
+export declare function dataFactsIO_of(outputPath: (instanceID: number) => Promise<string | null>): DataFactsIO;
+/**
+ * The format a file's name says, or null when its name says nothing.
+ *
+ * @param name - The file's name.
+ * @returns The format, or null.
+ */
+export declare function dataFormat_ofName(name: string): Exclude<ProcFeedDataFacts['format'], 'other' | 'unknown'> | null;
+/**
+ * Reads what one feed's data is.
+ *
+ * @param feedID - The feed.
+ * @param io - How to read.
+ * @param cache - The index.
+ * @returns The facts; null when they cannot be known yet (the topology not
+ *   loaded, the root still running, a read that failed) — try again later.
+ */
+export declare function feedDataFacts_read(feedID: number, io: DataFactsIO, cache?: ProcCache): Promise<ProcFeedDataFacts | null>;
+/**
+ * Reads the data facts of every feed that has none yet — the index's quiet
+ * tail after the topology sweep. A few feeds are read at once
+ * ({@link DATA_FACTS_IN_FLIGHT}), which is the throttle. What cannot be
+ * known yet is tried again in the next round, after a pause: rounds go on
+ * while one records something, and at least until a failing header has had
+ * all its tries, so a feed is left unread only while it truly cannot be read.
+ *
+ * @param io - How to read.
+ * @param pauseMs - The pause between rounds.
+ * @returns How many feeds were read.
+ */
+export declare function procDataFacts_sweep(io: DataFactsIO, pauseMs?: number): Promise<number>;
+/**
+ * Reads one feed's data facts, if it has none yet: a feed whose topology
+ * just loaded need not wait for the next sweep.
+ *
+ * @param feedID - The feed.
+ * @param io - How to read.
+ * @param cache - The index.
+ * @returns Whether facts were recorded.
+ */
+export declare function procDataFacts_feed(feedID: number, io: DataFactsIO, cache?: ProcCache): Promise<boolean>;

package/dist/dag/feedData.js

@@ -0,0 +1,352 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DATA_FACTS_ROUND_PAUSE_MS = exports.DATA_FACTS_FEED_MS = exports.DATA_FACTS_IN_FLIGHT = exports.DATA_FACTS_READER = void 0;
+exports.dataFactsIO_of = dataFactsIO_of;
+exports.dataFormat_ofName = dataFormat_ofName;
+exports.feedDataFacts_read = feedDataFacts_read;
+exports.procDataFacts_sweep = procDataFacts_sweep;
+exports.procDataFacts_feed = procDataFacts_feed;
+/**
+ * @file What a feed's data is, read once from the first file its root made.
+ *
+ * A feed begins from data — a DICOM series pulled from a PACS, a NIfTI
+ * volume, a folder of JPEGs — and a space arranged by data needs to know
+ * which, and for DICOM the modality and the series description. The index
+ * learns it once per feed, after the topology sweep, from the root job's
+ * output: the first file there, by name, descending into a folder when the
+ * output is one; its extension names the format, and for DICOM one header
+ * read gives the modality and description. The facts are persisted with the
+ * feed's checkpoint shard, so a feed is read once, ever — never at view time.
+ *
+ * What cannot be known yet (a root still running, a read that failed) is
+ * left unset and tried again on the next sweep; what is known to be absent
+ * (no output, a root that failed) is recorded as `unknown`, with the reason.
+ *
+ * @module
+ */
+const cumin_1 = require("@fnndsc/cumin");
+const tags_js_1 = require("../dicom/tags.js");
+/**
+ * How many entries of each kind (folders, files, links) a level is read to:
+ * the first data file is all that is wanted, and a full listing of a
+ * five-thousand-file upload cost five pages before it was looked at.
+ */
+const DATA_LIST_LIMIT = 50;
+/** How deep into nested folders the first file is looked for. */
+const DATA_DEPTH_MAX = 3;
+/**
+ * This reader's version, written into every record it makes: facts from an
+ * older reader are read again, so a better reading reaches feeds read before
+ * it. Raise it whenever what is read, or how, changes.
+ */
+exports.DATA_FACTS_READER = 1;
+/** Unnamed files tried as DICOM before a feed's data is called other. */
+const UNNAMED_TRIES = 3;
+/** Reads of a DICOM-named file that fail before its feed is recorded without a header. */
+const HEADER_TRIES_MAX = 3;
+/** Failed header reads so far, by feed. */
+const headerTries = new Map();
+/** Feeds read at once by a sweep: a feed costs a few CUBE round trips, and one at a time took three seconds each. */
+exports.DATA_FACTS_IN_FLIGHT = 4;
+/**
+ * How long one feed may take: a read that never answers (a link to a file
+ * that went away, a stalled download) must not hold a worker for good —
+ * four such hangs once stopped a whole sweep. The feed is tried again later.
+ */
+exports.DATA_FACTS_FEED_MS = 45_000;
+/**
+ * The pause between a sweep's rounds. A sweep once ran a single round, and
+ * every feed it could not answer yet — a header that failed once, a read
+ * that ran out of time — stayed unread for as long as the daemon lived:
+ * 199 of 709 feeds, found by watching the count stop.
+ */
+exports.DATA_FACTS_ROUND_PAUSE_MS = 30_000;
+/** Whether a sweep is under way: one at a time. */
+let sweeping = false;
+/**
+ * The reader the daemon uses, given the provider's output-path reader.
+ *
+ * @param outputPath - Reads a job's output folder.
+ * @returns The IO.
+ */
+function dataFactsIO_of(outputPath) {
+    // The dispatcher and the DICOM reader are reached at call time: the /proc
+    // provider that hands this reader in is itself one of the dispatcher's
+    // providers, and a module-level import would close that circle.
+    return {
+        outputPath,
+        list: async (path) => {
+            const { vfsDispatcher } = await import('../vfs/dispatcher.js');
+            // A projected folder (the PACS store, /proc) is its provider's to list.
+            if (vfsDispatcher.path_isVirtual(path)) {
+                const listed = await vfsDispatcher.list(path);
+                return listed.ok ? listed.value : null;
+            }
+            return cfsFirstPage_list(path);
+        },
+        header: async (path) => {
+            // The start of the file, not all of it: a cine loop is hundreds of megabytes.
+            const { dicomHeaderPrefix_get } = await import('../dicom/series.js');
+            const read = await dicomHeaderPrefix_get(path);
+            return read.ok ? read.value : null;
+        },
+    };
+}
+/**
+ * The first page of a CFS folder's folders, files and links. A folder that
+ * answers nothing is asked once, typed, whether it is empty, missing or
+ * refused — only a refusal is worth saying so for.
+ *
+ * @param path - The folder.
+ * @returns Its first entries, null when missing, or `refused`.
+ */
+async function cfsFirstPage_list(path) {
+    const { files_list, files_listOutcome } = await import('../files/index.js');
+    const { chrisRow_toItem } = await import('../vfs/providers/native.js');
+    const bounded = { limit: DATA_LIST_LIMIT, offset: 0 };
+    const kinds = ['dirs', 'files', 'links'];
+    let pages;
+    try {
+        pages = await Promise.all(kinds.map((kind) => files_list(bounded, kind, path)));
+    }
+    catch {
+        return 'refused';
+    }
+    const items = [];
+    pages.forEach((page, index) => {
+        const type = kinds[index] === 'dirs' ? 'dir' : kinds[index] === 'files' ? 'file' : 'link';
+        for (const row of page?.tableData ?? [])
+            items.push(chrisRow_toItem(row, type));
+    });
+    if (items.length > 0)
+        return items;
+    const outcome = await files_listOutcome(bounded, 'dirs', path);
+    return outcome.kind === 'refused' ? 'refused' : outcome.kind === 'missing' ? null : [];
+}
+/**
+ * The format a file's name says, or null when its name says nothing.
+ *
+ * @param name - The file's name.
+ * @returns The format, or null.
+ */
+function dataFormat_ofName(name) {
+    const lower = name.toLowerCase();
+    if (/\.(dcm|dicom|ima)$/.test(lower))
+        return 'dicom';
+    if (/\.nii(\.gz)?$/.test(lower))
+        return 'nifti';
+    if (/\.mgz$/.test(lower))
+        return 'mgz';
+    if (/\.jpe?g$/.test(lower))
+        return 'jpeg';
+    if (/\.png$/.test(lower))
+        return 'png';
+    return null;
+}
+/** A name that is not data: a hidden file, or the sidecars a job leaves beside its output. */
+function name_isSidecar(name) {
+    return name.startsWith('.') || /\.(json|txt|log|csv|md|xml)$/i.test(name);
+}
+/**
+ * The first data file under a folder: by name, a file whose name says its
+ * format first, else the first file at all, descending into the first
+ * folder when a level holds no file.
+ *
+ * @returns The file's path and name, or a reason when there is none.
+ */
+async function dataFile_find(folder, io) {
+    // A copy job's output is often links to what it copied — a file, or a
+    // whole folder: a link is data too, named by its own name and read, or
+    // descended into, through its target.
+    const isData = (item) => (item.type === 'file' || item.type === 'link') && !name_isSidecar(item.name);
+    const byName = (a, b) => a.name.localeCompare(b.name, undefined, { numeric: true });
+    const pathOf = (at, item) => (item.type === 'link' && item.target !== undefined ? item.target : `${at}/${item.name}`);
+    let at = folder.replace(/\/$/, '');
+    for (let depth = 0; depth <= DATA_DEPTH_MAX; depth++) {
+        const items = await io.list(at);
+        if (items === null)
+            return null;
+        if (items === 'refused')
+            return { reason: `its data is in ${at}, which this identity may not read` };
+        const data = items.filter(isData).sort(byName);
+        // A file whose name says its format, plain or linked.
+        const named = data.find((item) => dataFormat_ofName(item.name) !== null);
+        if (named !== undefined)
+            return { files: [{ path: pathOf(at, named), name: named.name, linked: named.type === 'link' }] };
+        // Plain files whose names say nothing (DICOM named by UID, no extension): a few are tried.
+        const plain = data.filter((item) => item.type === 'file').slice(0, UNNAMED_TRIES);
+        if (plain.length > 0)
+            return { files: plain.map((item) => ({ path: pathOf(at, item), name: item.name, linked: false })) };
+        // A link whose name says nothing: a folder when its target lists, else a file.
+        const link = data.find((item) => item.type === 'link');
+        if (link !== undefined) {
+            const target = pathOf(at, link);
+            const inside = await io.list(target);
+            if (inside === 'refused')
+                return { reason: `its data is linked from ${target}, which this identity may not read` };
+            if (inside === null)
+                return { files: [{ path: target, name: link.name, linked: true }] };
+            at = target.replace(/\/$/, '');
+            continue;
+        }
+        const folders = items.filter((item) => item.type === 'dir' && !item.name.startsWith('.')).sort(byName);
+        const next = folders[0];
+        if (next === undefined)
+            return { reason: 'its first job left no data files' };
+        at = `${at}/${next.name}`;
+    }
+    return { reason: `no data file within ${DATA_DEPTH_MAX} folders of its first job's output` };
+}
+/**
+ * Reads what one feed's data is.
+ *
+ * @param feedID - The feed.
+ * @param io - How to read.
+ * @param cache - The index.
+ * @returns The facts; null when they cannot be known yet (the topology not
+ *   loaded, the root still running, a read that failed) — try again later.
+ */
+async function feedDataFacts_read(feedID, io, cache = (0, cumin_1.procCache_get)()) {
+    if (!cache.topologyLoaded_has(feedID))
+        return null;
+    const roots = cache.feedInstanceIDs_get(feedID)
+        .map((id) => cache.instance_get(id))
+        .filter((inst) => inst !== undefined && inst.parentID === null)
+        .sort((a, b) => a.id - b.id);
+    const root = roots[0];
+    if (root === undefined)
+        return { format: 'unknown', reason: 'the feed has no jobs' };
+    if (root.status !== 'finishedSuccessfully') {
+        return (0, cumin_1.status_isTerminal)(root.status ?? '') ? { format: 'unknown', reason: 'its first job did not finish well' } : null;
+    }
+    const output = await io.outputPath(root.id);
+    if (output === null)
+        return null;
+    const found = await dataFile_find(output, io);
+    if (found === null)
+        return null;
+    if ('reason' in found)
+        return { format: 'unknown', reason: found.reason };
+    const first = found.files[0];
+    const named = dataFormat_ofName(first.name);
+    if (named !== null && named !== 'dicom')
+        return { format: named };
+    // A DICOM file often carries no extension: names that say nothing are
+    // tried as DICOM, a few of them, before the data is called other.
+    let header = null;
+    for (const file of found.files) {
+        header = await io.header(file.path);
+        if (header !== null)
+            break;
+    }
+    if (header === null) {
+        if (named !== 'dicom') {
+            return first.linked
+                ? { format: 'unknown', reason: `its data is linked from ${first.path}, which cannot be read here` }
+                : { format: 'other', reason: `its first file, ${first.name}, is not a format the index names` };
+        }
+        const tries = (headerTries.get(feedID) ?? 0) + 1;
+        headerTries.set(feedID, tries);
+        // Its name already says DICOM: record that, and why there is no modality.
+        return tries < HEADER_TRIES_MAX ? null : { format: 'dicom', reason: `the header of its first file, ${first.name}, could not be read` };
+    }
+    headerTries.delete(feedID);
+    const facts = { format: 'dicom' };
+    const modality = (0, tags_js_1.dicomTag_find)(header.tags, 'Modality')?.value.trim();
+    const description = (0, tags_js_1.dicomTag_find)(header.tags, 'SeriesDescription')?.value.trim();
+    if (modality !== undefined && modality.length > 0)
+        facts.modality = modality;
+    if (description !== undefined && description.length > 0)
+        facts.seriesDescription = description;
+    return facts;
+}
+/**
+ * Reads the data facts of every feed that has none yet — the index's quiet
+ * tail after the topology sweep. A few feeds are read at once
+ * ({@link DATA_FACTS_IN_FLIGHT}), which is the throttle. What cannot be
+ * known yet is tried again in the next round, after a pause: rounds go on
+ * while one records something, and at least until a failing header has had
+ * all its tries, so a feed is left unread only while it truly cannot be read.
+ *
+ * @param io - How to read.
+ * @param pauseMs - The pause between rounds.
+ * @returns How many feeds were read.
+ */
+async function procDataFacts_sweep(io, pauseMs = exports.DATA_FACTS_ROUND_PAUSE_MS) {
+    if (sweeping)
+        return 0;
+    sweeping = true;
+    const cache = (0, cumin_1.procCache_get)();
+    let read = 0;
+    try {
+        for (let round = 1;; round += 1) {
+            const recorded = await dataFactsRound_run(io, cache);
+            read += recorded;
+            const unread = cache.feedIDs_get().some((feedID) => !dataFacts_current(cache, feedID));
+            if (!unread || (recorded === 0 && round >= HEADER_TRIES_MAX))
+                break;
+            await new Promise((resolve) => { setTimeout(resolve, pauseMs); });
+        }
+    }
+    finally {
+        sweeping = false;
+    }
+    return read;
+}
+/**
+ * One round of a sweep: every feed without facts, newest first.
+ *
+ * @param io - How to read.
+ * @param cache - The index.
+ * @returns How many feeds were read.
+ */
+async function dataFactsRound_run(io, cache) {
+    let read = 0;
+    // Newest first: the work an operator is looking at now is read first.
+    const queue = cache.feedIDs_get().filter((feedID) => !dataFacts_current(cache, feedID)).sort((a, b) => b - a);
+    const worker = async () => {
+        for (let feedID = queue.shift(); feedID !== undefined; feedID = queue.shift()) {
+            if (await procDataFacts_feed(feedID, io, cache))
+                read += 1;
+        }
+    };
+    await Promise.all(Array.from({ length: exports.DATA_FACTS_IN_FLIGHT }, worker));
+    return read;
+}
+/**
+ * Reads one feed's data facts, if it has none yet: a feed whose topology
+ * just loaded need not wait for the next sweep.
+ *
+ * @param feedID - The feed.
+ * @param io - How to read.
+ * @param cache - The index.
+ * @returns Whether facts were recorded.
+ */
+async function procDataFacts_feed(feedID, io, cache = (0, cumin_1.procCache_get)()) {
+    if (dataFacts_current(cache, feedID))
+        return false;
+    let timer;
+    try {
+        const late = new Promise((resolve) => {
+            timer = setTimeout(() => resolve(null), exports.DATA_FACTS_FEED_MS);
+        });
+        const facts = await Promise.race([feedDataFacts_read(feedID, io, cache), late]);
+        if (facts === null)
+            return false;
+        cache.dataFacts_set(feedID, { ...facts, reader: exports.DATA_FACTS_READER });
+        return true;
+    }
+    catch {
+        // A read that throws is a read that failed: the next round tries again.
+        return false;
+    }
+    finally {
+        if (timer !== undefined)
+            clearTimeout(timer);
+    }
+}
+/** Whether a feed's facts were written by this reader: none, or an older reader's, are read again. */
+function dataFacts_current(cache, feedID) {
+    return cache.dataFacts_of(feedID)?.reader === exports.DATA_FACTS_READER;
+}
+//# sourceMappingURL=feedData.js.map

package/dist/dag/feedData.js.map

@@ -0,0 +1 @@
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package/dist/dicom/series.d.ts

@@ -83,6 +83,17 @@ export interface DicomFolderListing {
  * @returns The tag set, or an error when the file could not be read or parsed.
  */
 export declare function dicomHeader_get(path: string, io?: DicomFolderIO): Promise<Result<DicomTagSet>>;
+/** How much of a file's start is read for its header alone: every tag before the pixels, in any file seen so far. */
+export declare const DICOM_HEADER_PREFIX_BYTES: number;
+/**
+ * Reads a DICOM file's header from the start of the file alone: the
+ * download stops after {@link DICOM_HEADER_PREFIX_BYTES} and the parse at
+ * the pixel data. A cine loop of hundreds of megabytes costs two.
+ *
+ * @param path - The file.
+ * @returns The tags before the pixels, or an error when the prefix is not DICOM.
+ */
+export declare function dicomHeaderPrefix_get(path: string): Promise<Result<DicomTagSet>>;
 /**
  * Forgets every cached header.
  */

package/dist/dicom/series.js

@@ -1,7 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.dicomFolderIO_default = void 0;
+exports.DICOM_HEADER_PREFIX_BYTES = exports.dicomFolderIO_default = void 0;
 exports.dicomHeader_get = dicomHeader_get;
+exports.dicomHeaderPrefix_get = dicomHeaderPrefix_get;
 exports.dicomHeaderCache_clear = dicomHeaderCache_clear;
 exports.dicomFolder_list = dicomFolder_list;
 exports.dicomFiles_sample = dicomFiles_sample;
@@ -60,6 +61,44 @@ async function dicomHeader_get(path, io = exports.dicomFolderIO_default) {
     headerCache.set(path, parsed.value);
     return parsed;
 }
+/** How much of a file's start is read for its header alone: every tag before the pixels, in any file seen so far. */
+exports.DICOM_HEADER_PREFIX_BYTES = 2 * 1024 * 1024;
+/**
+ * Reads a DICOM file's header from the start of the file alone: the
+ * download stops after {@link DICOM_HEADER_PREFIX_BYTES} and the parse at
+ * the pixel data. A cine loop of hundreds of megabytes costs two.
+ *
+ * @param path - The file.
+ * @returns The tags before the pixels, or an error when the prefix is not DICOM.
+ */
+async function dicomHeaderPrefix_get(path) {
+    const opened = await (0, index_js_1.fileContent_getBinaryStream)(path);
+    if (!opened.ok)
+        return (0, cumin_1.Err)();
+    const stream = opened.value.stream;
+    let prefix;
+    if (Buffer.isBuffer(stream)) {
+        prefix = stream.subarray(0, exports.DICOM_HEADER_PREFIX_BYTES);
+    }
+    else if (stream !== null && typeof stream === 'object' && Symbol.asyncIterator in stream) {
+        const chunks = [];
+        let read = 0;
+        for await (const chunk of stream) {
+            const piece = Buffer.isBuffer(chunk) ? chunk : Buffer.from(chunk);
+            chunks.push(piece);
+            read += piece.length;
+            if (read >= exports.DICOM_HEADER_PREFIX_BYTES)
+                break;
+        }
+        // Leaving the loop early ends the download; say so to a stream that asks.
+        stream.destroy?.();
+        prefix = Buffer.concat(chunks).subarray(0, exports.DICOM_HEADER_PREFIX_BYTES);
+    }
+    else {
+        return (0, cumin_1.Err)();
+    }
+    return (0, tags_js_1.dicomTags_read)(prefix, true);
+}
 /**
  * Forgets every cached header.
  */

package/dist/dicom/series.js.map

@@ -1 +1 @@
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+{"version":3,"file":"series.js","sourceRoot":"","sources":["../../src/dicom/series.ts"],"names":[],"mappings":";;;AAgGA,0CAaC;AAaD,sDAuBC;AAKD,wDAEC;AAaD,4CAeC;AAUD,8CAQC;AAWD,sDAwDC;AAzQD;;;;;;;;;;;;;;;GAeG;AACH,yCAAiE;AACjE,wDAAqD;AAErD,gDAAuF;AACvF,mDAAwD;AACxD,uCAA2F;AAQ3F,mEAAmE;AACtD,QAAA,qBAAqB,GAAkB;IAClD,IAAI,EAAE,CAAC,IAAY,EAA8B,EAAE,CAAC,6BAAa,CAAC,IAAI,CAAC,IAAI,CAAC;IAC5E,UAAU,EAAE,CAAC,IAAY,EAA2B,EAAE,CAAC,IAAA,gCAAqB,EAAC,IAAI,CAAC;CACnF,CAAC;AAoDF,oEAAoE;AACpE,MAAM,kBAAkB,GAAW,IAAI,CAAC;AACxC,MAAM,WAAW,GAA6B,IAAI,GAAG,EAAuB,CAAC;AAE7E;;;;;;GAMG;AACI,KAAK,UAAU,eAAe,CAAC,IAAY,EAAE,KAAoB,6BAAqB;IAC3F,MAAM,MAAM,GAA4B,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IAC9D,IAAI,MAAM,KAAK,SAAS;QAAE,OAAO,IAAA,UAAE,EAAC,MAAM,CAAC,CAAC;IAC5C,MAAM,KAAK,GAAmB,MAAM,EAAE,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;IACxD,IAAI,CAAC,KAAK,CAAC,EAAE;QAAE,OAAO,IAAA,WAAG,GAAE,CAAC;IAC5B,MAAM,MAAM,GAAwB,IAAA,wBAAc,EAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IAChE,IAAI,CAAC,MAAM,CAAC,EAAE;QAAE,OAAO,IAAA,WAAG,GAAE,CAAC;IAC7B,IAAI,WAAW,CAAC,IAAI,IAAI,kBAAkB,EAAE,CAAC;QAC3C,MAAM,MAAM,GAAuB,WAAW,CAAC,IAAI,EAAE,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC;QACnE,IAAI,MAAM,KAAK,SAAS;YAAE,WAAW,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACvD,CAAC;IACD,WAAW,CAAC,GAAG,CAAC,IAAI,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC;IACpC,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,qHAAqH;AACxG,QAAA,yBAAyB,GAAW,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC;AAEjE;;;;;;;GAOG;AACI,KAAK,UAAU,qBAAqB,CAAC,IAAY;IACtD,MAAM,MAAM,GAAG,MAAM,IAAA,sCAA2B,EAAC,IAAI,CAAC,CAAC;IACvD,IAAI,CAAC,MAAM,CAAC,EAAE;QAAE,OAAO,IAAA,WAAG,GAAE,CAAC;IAC7B,MAAM,MAAM,GAAY,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC;IAC5C,IAAI,MAAc,CAAC;IACnB,IAAI,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE,CAAC;QAC5B,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,EAAE,iCAAyB,CAAC,CAAC;IACzD,CAAC;SAAM,IAAI,MAAM,KAAK,IAAI,IAAI,OAAO,MAAM,KAAK,QAAQ,IAAI,MAAM,CAAC,aAAa,IAAI,MAAM,EAAE,CAAC;QAC3F,MAAM,MAAM,GAAa,EAAE,CAAC;QAC5B,IAAI,IAAI,GAAW,CAAC,CAAC;QACrB,IAAI,KAAK,EAAE,MAAM,KAAK,IAAI,MAAqD,EAAE,CAAC;YAChF,MAAM,KAAK,GAAW,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAC1E,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YACnB,IAAI,IAAI,KAAK,CAAC,MAAM,CAAC;YACrB,IAAI,IAAI,IAAI,iCAAyB;gBAAE,MAAM;QAC/C,CAAC;QACD,0EAA0E;QACzE,MAAmC,CAAC,OAAO,EAAE,EAAE,CAAC;QACjD,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,iCAAyB,CAAC,CAAC;IACxE,CAAC;SAAM,CAAC;QACN,OAAO,IAAA,WAAG,GAAE,CAAC;IACf,CAAC;IACD,OAAO,IAAA,wBAAc,EAAC,MAAM,EAAE,IAAI,CAAC,CAAC;AACtC,CAAC;AAED;;GAEG;AACH,SAAgB,sBAAsB;IACpC,WAAW,CAAC,KAAK,EAAE,CAAC;AACtB,CAAC;AAED;;;;;;;;;;GAUG;AACI,KAAK,UAAU,gBAAgB,CAAC,MAAc,EAAE,KAAoB,6BAAqB;IAC9F,MAAM,OAAO,GAAsB,MAAM,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IACzD,IAAI,CAAC,OAAO,CAAC,EAAE;QAAE,OAAO,IAAA,WAAG,GAAE,CAAC;IAC9B,MAAM,IAAI,GAAW,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IACzE,MAAM,OAAO,GAAc,OAAO,CAAC,KAAK,CAAC,MAAM,CAC7C,CAAC,IAAa,EAAW,EAAE,CAAC,IAAI,CAAC,IAAI,KAAK,MAAM,IAAI,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAC9E,CAAC;IACF,MAAM,QAAQ,GAAY,OAAO,CAAC,MAAM,GAAG,CAAC,IAAI,OAAO,CAAC,KAAK,CAAC,CAAC,IAAa,EAAW,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;IACnH,MAAM,MAAM,GAAc,CAAC,GAAG,OAAO,CAAC,CAAC,IAAI,CAAC,CAAC,CAAU,EAAE,CAAU,EAAU,EAAE,CAC7E,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CACtH,CAAC;IACF,OAAO,IAAA,UAAE,EAAC;QACR,KAAK,EAAE,MAAM,CAAC,GAAG,CAAC,CAAC,IAAa,EAAkC,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,GAAG,IAAI,IAAI,IAAI,CAAC,IAAI,EAAE,EAAE,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC;QACzH,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS;KACzC,CAAC,CAAC;AACL,CAAC;AAED;;;;;;;GAOG;AACH,SAAgB,iBAAiB,CAAI,KAAU,EAAE,GAAW;IAC1D,IAAI,GAAG,IAAI,CAAC;QAAE,OAAO,EAAE,CAAC;IACxB,IAAI,KAAK,CAAC,MAAM,IAAI,GAAG;QAAE,OAAO,KAAK,CAAC;IACtC,IAAI,GAAG,KAAK,CAAC;QAAE,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IACjC,MAAM,MAAM,GAAQ,EAAE,CAAC;IACvB,MAAM,IAAI,GAAW,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;IACpD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE;QAAE,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC;IACvE,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;;;GAQG;AACI,KAAK,UAAU,qBAAqB,CACzC,MAAc,EACd,UAA8B,EAAE,EAChC,KAAoB,6BAAqB;IAEzC,MAAM,MAAM,GAA+B,MAAM,gBAAgB,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;IAC9E,IAAI,CAAC,MAAM,CAAC,EAAE,IAAI,MAAM,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,IAAA,WAAG,GAAE,CAAC;IAChE,MAAM,KAAK,GAA0C,MAAM,CAAC,KAAK,CAAC,KAAK,CAAC;IACxE,MAAM,MAAM,GAAwB,MAAM,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IAC7E,IAAI,CAAC,MAAM,CAAC,EAAE;QAAE,OAAO,IAAA,WAAG,GAAE,CAAC;IAC7B,MAAM,IAAI,GAAe,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;IAE3C,MAAM,iBAAiB,GAAuB,UAAU,CAAC,IAAI,EAAE,mBAAmB,CAAC,CAAC;IACpF,MAAM,OAAO,GAAuB;QAClC,IAAI,EAAE,MAAM;QACZ,GAAG,CAAC,iBAAiB,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,iBAAiB,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACjE,GAAG,CAAC,UAAU,CAAC,IAAI,EAAE,kBA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package/dist/dicom/tags.d.ts

@@ -50,10 +50,13 @@ export interface DicomTagsSummary {
 /**
  * Reads the elements of a DICOM file.
  *
- * @param bytes - The whole file, Part 10 header included.
+ * @param bytes - The whole file, Part 10 header included — or, with
+ *   `headerOnly`, as much of its start as holds everything before the pixels.
+ * @param headerOnly - Stop at the pixel data (7FE0,0010): a prefix of a large
+ *   file is enough, and the pixels are neither read nor needed.
  * @returns The tag set, or an error when the bytes are not a DICOM file.
  */
-export declare function dicomTags_read(bytes: Buffer): Result<DicomTagSet>;
+export declare function dicomTags_read(bytes: Buffer, headerOnly?: boolean): Result<DicomTagSet>;
 /**
  * Finds one tag by name in a tag set's top level.
  *

package/dist/dicom/tags.js

@@ -32,13 +32,20 @@ const STRUCTURAL_TAGS = new Set(['FFFEE000', 'FFFEE00D', 'FFFEE0DD']);
 /**
  * Reads the elements of a DICOM file.
  *
- * @param bytes - The whole file, Part 10 header included.
+ * @param bytes - The whole file, Part 10 header included — or, with
+ *   `headerOnly`, as much of its start as holds everything before the pixels.
+ * @param headerOnly - Stop at the pixel data (7FE0,0010): a prefix of a large
+ *   file is enough, and the pixels are neither read nor needed.
  * @returns The tag set, or an error when the bytes are not a DICOM file.
  */
-function dicomTags_read(bytes) {
+function dicomTags_read(bytes, headerOnly = false) {
     const buffer = new Uint8Array(bytes).slice().buffer;
     try {
-        const message = dcmjs_1.default.data.DicomMessage.readFile(buffer, { ignoreErrors: true });
+        const message = dcmjs_1.default.data.DicomMessage.readFile(buffer, headerOnly ? { ignoreErrors: true, untilTag: '7FE00010', includeUntilTagValue: false } : { ignoreErrors: true });
+        // Stopped at the pixels, the pixel element stands with no value: it is
+        // not a tag the header has.
+        if (headerOnly)
+            delete message.dict['7FE00010'];
         const meta = dict_flatten(message.meta);
         const body = dict_flatten(message.dict);
         const syntax = meta.find((tag) => tag.name === 'TransferSyntaxUID');

package/dist/dicom/tags.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -21,9 +21,10 @@ export * from './workflows/index.js';
 export * from './compute/index.js';
 export * from './jobs/index.js';
 export * from './users/index.js';
-export { procCache_refresh, procTopology_warmup, procTopology_reconcileFeeds, procTopology_retry, procTopology_status, procTopology_await, procFeed_ensureLoaded, feedInstances_ensureLoaded, feedInstances_ensureStarted, procFeed_refreshStart, type FeedTopologyReadiness, feedMeta_ensure, feedStatus_refresh, feedVisit_sync, feedCached_isSettled, procRoster_sync, procRoster_syncStart, procRoster_bootSync, procVisitState_reset, FEED_RECHECK_MS, ROSTER_FULL_WALK_MS, FEED_VISIT_COALESCE_MS } from './vfs/providers/proc.js';
+export { procCache_refresh, procTopology_warmup, procTopology_reconcileFeeds, procTopology_retry, procTopology_status, procTopology_await, procFeed_ensureLoaded, feedInstances_ensureLoaded, feedInstances_ensureStarted, procFeed_refreshStart, type FeedTopologyReadiness, feedMeta_ensure, feedStatus_refresh, feedVisit_sync, feedCached_isSettled, procRoster_sync, procRoster_syncStart, procRoster_bootSync, procVisitState_reset, procDataFacts_start, FEED_RECHECK_MS, ROSTER_FULL_WALK_MS, FEED_VISIT_COALESCE_MS } from './vfs/providers/proc.js';
 export type { ProcTopologyState, ProcTopologyStatus } from './vfs/providers/proc.js';
 export { feedGraph_build, signature_compute } from './dag/feedGraph.js';
 export type { FeedGraph, FeedNode } from './dag/feedGraph.js';
 export { feedJoins_ensure, nodeJoins_resolve } from './dag/feedJoins.js';
 export { feedGraphData_ensure } from './dag/feedLoad.js';
+export { feedDataFacts_read, procDataFacts_sweep, procDataFacts_feed, dataFactsIO_of, dataFormat_ofName, DATA_FACTS_READER, type DataFactsIO } from './dag/feedData.js';

package/dist/index.js

@@ -18,7 +18,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.feedGraphData_ensure = exports.nodeJoins_resolve = exports.feedJoins_ensure = exports.signature_compute = exports.feedGraph_build = exports.FEED_VISIT_COALESCE_MS = exports.ROSTER_FULL_WALK_MS = exports.FEED_RECHECK_MS = exports.procVisitState_reset = exports.procRoster_bootSync = exports.procRoster_syncStart = exports.procRoster_sync = exports.feedCached_isSettled = exports.feedVisit_sync = exports.feedStatus_refresh = exports.feedMeta_ensure = exports.procFeed_refreshStart = exports.feedInstances_ensureStarted = exports.feedInstances_ensureLoaded = exports.procFeed_ensureLoaded = exports.procTopology_await = exports.procTopology_status = exports.procTopology_retry = exports.procTopology_reconcileFeeds = exports.procTopology_warmup = exports.procCache_refresh = void 0;
+exports.DATA_FACTS_READER = exports.dataFormat_ofName = exports.dataFactsIO_of = exports.procDataFacts_feed = exports.procDataFacts_sweep = exports.feedDataFacts_read = exports.feedGraphData_ensure = exports.nodeJoins_resolve = exports.feedJoins_ensure = exports.signature_compute = exports.feedGraph_build = exports.FEED_VISIT_COALESCE_MS = exports.ROSTER_FULL_WALK_MS = exports.FEED_RECHECK_MS = exports.procDataFacts_start = exports.procVisitState_reset = exports.procRoster_bootSync = exports.procRoster_syncStart = exports.procRoster_sync = exports.feedCached_isSettled = exports.feedVisit_sync = exports.feedStatus_refresh = exports.feedMeta_ensure = exports.procFeed_refreshStart = exports.feedInstances_ensureStarted = exports.feedInstances_ensureLoaded = exports.procFeed_ensureLoaded = exports.procTopology_await = exports.procTopology_status = exports.procTopology_retry = exports.procTopology_reconcileFeeds = exports.procTopology_warmup = exports.procCache_refresh = void 0;
 __exportStar(require("./feeds/index.js"), exports);
 __exportStar(require("./plugins/index.js"), exports);
 __exportStar(require("./files/index.js"), exports);
@@ -57,6 +57,7 @@ Object.defineProperty(exports, "procRoster_sync", { enumerable: true, get: funct
 Object.defineProperty(exports, "procRoster_syncStart", { enumerable: true, get: function () { return proc_js_1.procRoster_syncStart; } });
 Object.defineProperty(exports, "procRoster_bootSync", { enumerable: true, get: function () { return proc_js_1.procRoster_bootSync; } });
 Object.defineProperty(exports, "procVisitState_reset", { enumerable: true, get: function () { return proc_js_1.procVisitState_reset; } });
+Object.defineProperty(exports, "procDataFacts_start", { enumerable: true, get: function () { return proc_js_1.procDataFacts_start; } });
 Object.defineProperty(exports, "FEED_RECHECK_MS", { enumerable: true, get: function () { return proc_js_1.FEED_RECHECK_MS; } });
 Object.defineProperty(exports, "ROSTER_FULL_WALK_MS", { enumerable: true, get: function () { return proc_js_1.ROSTER_FULL_WALK_MS; } });
 Object.defineProperty(exports, "FEED_VISIT_COALESCE_MS", { enumerable: true, get: function () { return proc_js_1.FEED_VISIT_COALESCE_MS; } });
@@ -68,4 +69,11 @@ Object.defineProperty(exports, "feedJoins_ensure", { enumerable: true, get: func
 Object.defineProperty(exports, "nodeJoins_resolve", { enumerable: true, get: function () { return feedJoins_js_1.nodeJoins_resolve; } });
 var feedLoad_js_1 = require("./dag/feedLoad.js");
 Object.defineProperty(exports, "feedGraphData_ensure", { enumerable: true, get: function () { return feedLoad_js_1.feedGraphData_ensure; } });
+var feedData_js_1 = require("./dag/feedData.js");
+Object.defineProperty(exports, "feedDataFacts_read", { enumerable: true, get: function () { return feedData_js_1.feedDataFacts_read; } });
+Object.defineProperty(exports, "procDataFacts_sweep", { enumerable: true, get: function () { return feedData_js_1.procDataFacts_sweep; } });
+Object.defineProperty(exports, "procDataFacts_feed", { enumerable: true, get: function () { return feedData_js_1.procDataFacts_feed; } });
+Object.defineProperty(exports, "dataFactsIO_of", { enumerable: true, get: function () { return feedData_js_1.dataFactsIO_of; } });
+Object.defineProperty(exports, "dataFormat_ofName", { enumerable: true, get: function () { return feedData_js_1.dataFormat_ofName; } });
+Object.defineProperty(exports, "DATA_FACTS_READER", { enumerable: true, get: function () { return feedData_js_1.DATA_FACTS_READER; } });
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AAAA;;;GAGG;;;;;;;;;;;;;;;;;AAEH,mDAAiC;AACjC,qDAAmC;AACnC,mDAAiC;AACjC,qDAAmC;AACnC,qDAAmC;AACnC,mDAAiC;AACjC,uDAAqC;AACrC,kDAAgC;AAChC,mDAAiC;AACjC,sDAAoC;AACpC,iDAA+B;AAC/B,kDAAgC;AAChC,oDAAkC;AAClC,yDAAuC;AACvC,6DAA2C;AAC3C,uDAAqC;AACrC,qDAAmC;AACnC,kDAAgC;AAChC,mDAAiC;AACjC,mDAA8hB;AAArhB,4GAAA,iBAAiB,OAAA;AAAE,8GAAA,mBAAmB,OAAA;AAAE,sHAAA,2BAA2B,OAAA;AAAE,6GAAA,kBAAkB,OAAA;AAAE,8GAAA,mBAAmB,OAAA;AAAE,6GAAA,kBAAkB,OAAA;AAAE,gHAAA,qBAAqB,OAAA;AAAE,qHAAA,0BAA0B,OAAA;AAAE,sHAAA,2BAA2B,OAAA;AAAE,gHAAA,qBAAqB,OAAA;AAA8B,0GAAA,eAAe,OAAA;AAAE,6GAAA,kBAAkB,OAAA;AAAE,yGAAA,cAAc,OAAA;AAAE,+GAAA,oBAAoB,OAAA;AAAE,0GAAA,eAAe,OAAA;AAAE,+GAAA,oBAAoB,OAAA;AAAE,8GAAA,mBAAmB,OAAA;AAAE,+GAAA,oBAAoB,OAAA;AAAE,8GAAA,mBAAmB,OAAA;AAAE,0GAAA,eAAe,OAAA;AAAE,8GAAA,mBAAmB,OAAA;AAAE,iHAAA,sBAAsB,OAAA;AAE5f,mDAAwE;AAA/D,+GAAA,eAAe,OAAA;AAAE,iHAAA,iBAAiB,OAAA;AAE3C,mDAAyE;AAAhE,gHAAA,gBAAgB,OAAA;AAAE,iHAAA,iBAAiB,OAAA;AAC5C,iDAAyD;AAAhD,mHAAA,oBAAoB,OAAA;AAC7B,iDAAwK;AAA/J,iHAAA,kBAAkB,OAAA;AAAE,kHAAA,mBAAmB,OAAA;AAAE,iHAAA,kBAAkB,OAAA;AAAE,6GAAA,cAAc,OAAA;AAAE,gHAAA,iBAAiB,OAAA;AAAE,gHAAA,iBAAiB,OAAA"}

package/dist/vfs/providers/native.d.ts

@@ -7,6 +7,25 @@
  */
 import { Result } from "@fnndsc/cumin";
 import { VFSProvider, VFSItem, CpOptions } from "../provider.js";
+/**
+ * Shape of raw file browser items returned by the ChRIS API.
+ */
+interface ChrisFileOrDirRaw {
+    path?: string;
+    fname?: string;
+    fsize?: number;
+    owner_username?: string;
+    creation_date?: string;
+}
+/**
+ * One CUBE files/dirs/links row as a listing item: its name (the last path
+ * segment, a link's `.chrislink` dropped) and, for a link, where it points.
+ *
+ * @param raw - The row.
+ * @param type - What kind of row it is.
+ * @returns The item.
+ */
+export declare function chrisRow_toItem(raw: ChrisFileOrDirRaw, type: "dir" | "file" | "link" | "vfs"): VFSItem;
 /**
  * Native ChRIS filesystem provider operating on absolute CUBE folders.
  */
@@ -32,3 +51,4 @@ export declare class NativeVfsProvider implements VFSProvider {
      */
     cp(src: string, dest: string, options: CpOptions): Promise<boolean>;
 }
+export {};

package/dist/vfs/providers/native.js

@@ -11,10 +11,41 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.NativeVfsProvider = void 0;
+exports.chrisRow_toItem = chrisRow_toItem;
 const cumin_1 = require("@fnndsc/cumin");
 const sort_js_1 = require("../sort.js");
 const index_js_1 = require("../../files/index.js");
 const path_1 = __importDefault(require("path"));
+/**
+ * One CUBE files/dirs/links row as a listing item: its name (the last path
+ * segment, a link's `.chrislink` dropped) and, for a link, where it points.
+ *
+ * @param raw - The row.
+ * @param type - What kind of row it is.
+ * @returns The item.
+ */
+function chrisRow_toItem(raw, type) {
+    let name = raw.fname || raw.path || "";
+    if (name.includes("/")) {
+        name = name.split("/").pop() || name;
+    }
+    if (type === "link" && name.endsWith(".chrislink")) {
+        name = name.slice(0, -10);
+    }
+    const targetPath = raw.path
+        ? raw.path.startsWith("/")
+            ? raw.path
+            : "/" + raw.path
+        : undefined;
+    return {
+        name,
+        type,
+        size: raw.fsize || 0,
+        owner: raw.owner_username || "unknown",
+        date: raw.creation_date || "",
+        target: targetPath,
+    };
+}
 /**
  * Native ChRIS filesystem provider operating on absolute CUBE folders.
  */
@@ -87,28 +118,7 @@ class NativeVfsProvider {
                 }
             }
             const items = [];
-            const mapToItem = (raw, type) => {
-                let name = raw.fname || raw.path || "";
-                if (name.includes("/")) {
-                    name = name.split("/").pop() || name;
-                }
-                if (type === "link" && name.endsWith(".chrislink")) {
-                    name = name.slice(0, -10);
-                }
-                const targetPath = raw.path
-                    ? raw.path.startsWith("/")
-                        ? raw.path
-                        : "/" + raw.path
-                    : undefined;
-                return {
-                    name,
-                    type,
-                    size: raw.fsize || 0,
-                    owner: raw.owner_username || "unknown",
-                    date: raw.creation_date || "",
-                    target: targetPath,
-                };
-            };
+            const mapToItem = chrisRow_toItem;
             if (dirsResult.status === "fulfilled" && dirsResult.value?.tableData) {
                 dirsResult.value.tableData.forEach((d) => items.push(mapToItem(d, "dir")));
             }

package/dist/vfs/providers/native.js.map

@@ -1 +1 @@
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package/dist/vfs/providers/proc.d.ts

@@ -221,6 +221,14 @@ export declare function procRoster_bootSync(): Promise<number[]>;
  * Forgets all visit bookkeeping (tests, and a cache cleared underneath us).
  */
 export declare function procVisitState_reset(): void;
+/**
+ * Reads the data facts of every feed that has none yet (see
+ * `dag/feedData.ts`): the index's tail after a sweep, and the one a daemon
+ * that restored its checkpoint starts itself, since no sweep runs then.
+ *
+ * @returns How many feeds were read; zero when a sweep is already under way.
+ */
+export declare function procDataFacts_start(): Promise<number>;
 /**
  * Starts or joins the session's global plugin-instance topology sweep.
  *

package/dist/vfs/providers/proc.js

@@ -39,6 +39,7 @@ exports.procRoster_sync = procRoster_sync;
 exports.procRoster_syncStart = procRoster_syncStart;
 exports.procRoster_bootSync = procRoster_bootSync;
 exports.procVisitState_reset = procVisitState_reset;
+exports.procDataFacts_start = procDataFacts_start;
 exports.procTopology_warmup = procTopology_warmup;
 exports.procTopology_reconcileFeeds = procTopology_reconcileFeeds;
 exports.procTopology_retry = procTopology_retry;
@@ -48,6 +49,7 @@ exports.procCache_refresh = procCache_refresh;
 const cumin_1 = require("@fnndsc/cumin");
 const index_js_1 = require("../../jobs/index.js");
 const feedJoins_js_1 = require("../../dag/feedJoins.js");
+const feedData_js_1 = require("../../dag/feedData.js");
 const packages_js_1 = require("../../pipelines/packages.js");
 /** Virtual filenames inside each instance directory. */
 const INSTANCE_FILES = new Set(['status', 'params', 'log', 'data']);
@@ -237,6 +239,8 @@ async function feedInstances_load(feedID) {
             cache.instance_add(procInstance_fromRow(inst));
         cache.topologyLoaded_mark(feedID);
         cache.feedLoad_clear(feedID);
+        // What the feed's data is: read once, now its root is known.
+        void (0, feedData_js_1.procDataFacts_feed)(feedID, dataFactsIO_get());
     }
     catch (error) {
         // A walk that stops names where it stopped and stays annunciated for a
@@ -1149,6 +1153,25 @@ function procTopology_start(state) {
     });
     return sweep;
 }
+/** The data-facts reader, with this provider's output paths. */
+function dataFactsIO_get() {
+    return (0, feedData_js_1.dataFactsIO_of)(instanceOutputPath_ensure);
+}
+/**
+ * Reads the data facts of every feed that has none yet (see
+ * `dag/feedData.ts`): the index's tail after a sweep, and the one a daemon
+ * that restored its checkpoint starts itself, since no sweep runs then.
+ *
+ * @returns How many feeds were read; zero when a sweep is already under way.
+ */
+async function procDataFacts_start() {
+    try {
+        return await (0, feedData_js_1.procDataFacts_sweep)(dataFactsIO_get());
+    }
+    catch {
+        return 0;
+    }
+}
 /**
  * Kicks the quiet settlement tails once the topology index is complete:
  * every unresolved `ts` join resolves in the background (so first diagrams
@@ -1158,6 +1181,7 @@ function procTopology_start(state) {
  */
 function procSettlementTails_run() {
     void (0, feedJoins_js_1.procJoins_sweep)().catch(() => { });
+    void procDataFacts_start();
     void (0, packages_js_1.pipelinePackages_sweep)().catch(() => { });
 }
 /**

package/dist/vfs/providers/proc.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fnndsc/salsa",
-  "version": "3.18.2",
+  "version": "3.19.0",
   "description": "Shared Application Logic and Service Assets for ChRIS",
   "repository": {
     "type": "git",
@@ -60,7 +60,7 @@
     "adm-zip": "npm:empty-npm-package@1.0.0"
   },
   "dependencies": {
-    "@fnndsc/cumin": "^3.23.0",
+    "@fnndsc/cumin": "^3.24.0",
     "axios": "^1.6.8",
     "dcmjs": "^0.52.0",
     "ws": "^8.21.0"