@fnndsc/cumin 3.21.1 → 3.22.1

package/dist/pacs/chrisPACS.d.ts

@@ -227,6 +227,41 @@ export declare function seriesStorage_resolve(seriesInstanceUID: string, retry?:
     attempts: number;
     delayMs: number;
 }): Promise<Result<SeriesStorageState>>;
+/**
+ * The exact keys CUBE indexes a stored series by.
+ *
+ * Only identifiers belong here. A name is matched loosely and would answer
+ * a different question from the one asked, which on this path means telling
+ * an operator a series is not held when it is.
+ */
+export interface SeriesStorageFilter {
+    PatientID?: string;
+    AccessionNumber?: string;
+    StudyInstanceUID?: string;
+    SeriesInstanceUID?: string;
+}
+/**
+ * Resolves the storage state of every series CUBE holds under the given
+ * filters, in one pass.
+ *
+ * This exists because the per-series resolver costs two round trips EACH,
+ * and a patient's history runs to hundreds of series: reconciling a stored
+ * PACS answer that way took twenty seconds against a live CUBE, all of it
+ * spent asking the same question three hundred times. CUBE already indexes
+ * a stored series by study, so the whole reconciliation is one page per
+ * study — the count of studies, not of series.
+ *
+ * The series record carries the folder but no file count, so counts are a
+ * second pass over what was actually found, which is only ever the series
+ * already home.
+ *
+ * @param filters - What to ask about, usually one per study in an answer.
+ * @param options - `counts: false` skips the file counts, leaving zero.
+ * @returns Series UID to storage state, holding only the series CUBE has.
+ */
+export declare function seriesStorage_resolveMany(filters: ReadonlyArray<SeriesStorageFilter>, options?: {
+    counts?: boolean;
+}): Promise<Result<Map<string, SeriesStorageState>>>;
 /**
  * Reports the retrieve status for a PACS query.
  *

package/dist/pacs/chrisPACS.js

@@ -21,6 +21,7 @@ exports.pacsRetrieve_create = pacsRetrieve_create;
 exports.pacsRetrieves_list = pacsRetrieves_list;
 exports.pacsRetrieve_delete = pacsRetrieve_delete;
 exports.seriesStorage_resolve = seriesStorage_resolve;
+exports.seriesStorage_resolveMany = seriesStorage_resolveMany;
 exports.pacsRetrieve_statusForQuery = pacsRetrieve_statusForQuery;
 const errorStack_js_1 = require("../error/errorStack.js");
 const result_js_1 = require("../utils/result.js");
@@ -494,6 +495,103 @@ async function studySeries_buildStatus(study) {
     }
     return studyStatus;
 }
+/** How many stored-series pages or file counts are asked for at once. */
+const SERIES_BULK_CONCURRENCY = 8;
+/** How many stored series one page asks for. */
+const SERIES_PAGE = 300;
+/**
+ * Resolves the storage state of every series CUBE holds under the given
+ * filters, in one pass.
+ *
+ * This exists because the per-series resolver costs two round trips EACH,
+ * and a patient's history runs to hundreds of series: reconciling a stored
+ * PACS answer that way took twenty seconds against a live CUBE, all of it
+ * spent asking the same question three hundred times. CUBE already indexes
+ * a stored series by study, so the whole reconciliation is one page per
+ * study — the count of studies, not of series.
+ *
+ * The series record carries the folder but no file count, so counts are a
+ * second pass over what was actually found, which is only ever the series
+ * already home.
+ *
+ * @param filters - What to ask about, usually one per study in an answer.
+ * @param options - `counts: false` skips the file counts, leaving zero.
+ * @returns Series UID to storage state, holding only the series CUBE has.
+ */
+async function seriesStorage_resolveMany(filters, options) {
+    const found = new Map();
+    try {
+        const client = await chrisConnection_js_1.chrisConnection.client_get();
+        if (!client)
+            return (0, result_js_1.Ok)(found);
+        await batches_run(filters, SERIES_BULK_CONCURRENCY, async (filter) => {
+            for (let offset = 0;; offset += SERIES_PAGE) {
+                const page = await client.getPACSSeriesList({ ...filter, limit: SERIES_PAGE, offset });
+                const items = page.getItems();
+                if (!items || items.length === 0)
+                    return;
+                for (const item of items) {
+                    const data = (0, adapter_js_1.itemData_get)(item);
+                    const uid = data?.SeriesInstanceUID;
+                    const rawFolder = data?.folder_path;
+                    if (!uid || !rawFolder)
+                        continue;
+                    found.set(uid, {
+                        fileCount: 0,
+                        folderPath: rawFolder.startsWith("/") ? rawFolder : `/${rawFolder}`,
+                    });
+                }
+                if (items.length < SERIES_PAGE)
+                    return;
+            }
+        });
+        if (options?.counts === false)
+            return (0, result_js_1.Ok)(found);
+        const homed = [...found.entries()];
+        await batches_run(homed, SERIES_BULK_CONCURRENCY, async ([, state]) => {
+            if (state.folderPath === null)
+                return;
+            state.fileCount = await folderFiles_count(client, state.folderPath);
+        });
+        return (0, result_js_1.Ok)(found);
+    }
+    catch (error) {
+        const message = error instanceof Error ? error.message : String(error);
+        errorStack_js_1.errorStack.stack_push("warning", `Bulk series storage lookup failed: ${message}`);
+        return (0, result_js_1.Err)();
+    }
+}
+/**
+ * Counts the PACS files registered under one folder.
+ *
+ * Asks for a single row and reads the total, since the count is the whole
+ * question and the rows are not wanted.
+ *
+ * @param client - The connected CUBE client.
+ * @param folderPath - The folder, with or without its leading slash.
+ * @returns The number of files, or zero when CUBE will not say.
+ */
+async function folderFiles_count(client, folderPath) {
+    const fname = folderPath.startsWith("/") ? folderPath.slice(1) : folderPath;
+    const probe = await client.getPACSFiles({ fname, limit: 1 });
+    const total = probe.totalCount;
+    if (typeof total === "number" && total > 0)
+        return total;
+    const items = probe.getItems();
+    return items ? items.length : 0;
+}
+/**
+ * Runs work over a list, a bounded number at a time.
+ *
+ * @param items - What to work through.
+ * @param width - How many at once.
+ * @param work - What to do with one item.
+ */
+async function batches_run(items, width, work) {
+    for (let start = 0; start < items.length; start += width) {
+        await Promise.all(items.slice(start, start + width).map(work));
+    }
+}
 /**
  * Reports the retrieve status for a PACS query.
  *

package/dist/pacs/chrisPACS.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fnndsc/cumin",
-  "version": "3.21.1",
+  "version": "3.22.1",
   "description": "Utility library for ChILI and other ChRIS-related JavaScript applications",
   "repository": {
     "type": "git",
@@ -63,6 +63,6 @@
     "@fnndsc/chrisapi": "^1.25.0",
     "chalk": "^4.1.2",
     "figlet": "^1.7.0",
-    "@fnndsc/menu": "^0.8.0"
+    "@fnndsc/menu": "^0.9.0"
   }
 }