@fnndsc/cumin 3.2.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +21 -0
- package/README.md +78 -0
- package/dist/activities/chrisActivity.d.ts +19 -0
- package/dist/activities/chrisActivity.js +29 -0
- package/dist/activities/chrisActivity.js.map +1 -0
- package/dist/cache/index.d.ts +9 -0
- package/dist/cache/index.js +15 -0
- package/dist/cache/index.js.map +1 -0
- package/dist/cache/listCache.d.ts +182 -0
- package/dist/cache/listCache.js +266 -0
- package/dist/cache/listCache.js.map +1 -0
- package/dist/cache/procCache.d.ts +150 -0
- package/dist/cache/procCache.js +257 -0
- package/dist/cache/procCache.js.map +1 -0
- package/dist/cli.d.ts +7 -0
- package/dist/cli.js +43 -0
- package/dist/cli.js.map +1 -0
- package/dist/compute/computeResources.d.ts +65 -0
- package/dist/compute/computeResources.js +113 -0
- package/dist/compute/computeResources.js.map +1 -0
- package/dist/config/config.d.ts +221 -0
- package/dist/config/config.js +350 -0
- package/dist/config/config.js.map +1 -0
- package/dist/connect/chrisConnection.d.ts +121 -0
- package/dist/connect/chrisConnection.js +303 -0
- package/dist/connect/chrisConnection.js.map +1 -0
- package/dist/context/chrisContext.d.ts +110 -0
- package/dist/context/chrisContext.js +324 -0
- package/dist/context/chrisContext.js.map +1 -0
- package/dist/error/errorStack.d.ts +115 -0
- package/dist/error/errorStack.js +175 -0
- package/dist/error/errorStack.js.map +1 -0
- package/dist/feeds/chrisFeed.d.ts +188 -0
- package/dist/feeds/chrisFeed.js +432 -0
- package/dist/feeds/chrisFeed.js.map +1 -0
- package/dist/filebrowser/chrisFileBrowser.d.ts +77 -0
- package/dist/filebrowser/chrisFileBrowser.js +134 -0
- package/dist/filebrowser/chrisFileBrowser.js.map +1 -0
- package/dist/filebrowser/chrisFiles.d.ts +67 -0
- package/dist/filebrowser/chrisFiles.js +130 -0
- package/dist/filebrowser/chrisFiles.js.map +1 -0
- package/dist/filebrowser/chrisPACS.d.ts +43 -0
- package/dist/filebrowser/chrisPACS.js +103 -0
- package/dist/filebrowser/chrisPACS.js.map +1 -0
- package/dist/filebrowser/chrisPipeline.d.ts +47 -0
- package/dist/filebrowser/chrisPipeline.js +118 -0
- package/dist/filebrowser/chrisPipeline.js.map +1 -0
- package/dist/groups/chrisGroups.d.ts +11 -0
- package/dist/groups/chrisGroups.js +18 -0
- package/dist/groups/chrisGroups.js.map +1 -0
- package/dist/index.d.ts +68 -0
- package/dist/index.js +86 -0
- package/dist/index.js.map +1 -0
- package/dist/io/browser_io.d.ts +97 -0
- package/dist/io/browser_io.js +149 -0
- package/dist/io/browser_io.js.map +1 -0
- package/dist/io/chrisIO.d.ts +110 -0
- package/dist/io/chrisIO.js +415 -0
- package/dist/io/chrisIO.js.map +1 -0
- package/dist/io/io.d.ts +21 -0
- package/dist/io/io.js +6 -0
- package/dist/io/io.js.map +1 -0
- package/dist/io/node_io.d.ts +30 -0
- package/dist/io/node_io.js +188 -0
- package/dist/io/node_io.js.map +1 -0
- package/dist/jobs/chrisJob.d.ts +43 -0
- package/dist/jobs/chrisJob.js +169 -0
- package/dist/jobs/chrisJob.js.map +1 -0
- package/dist/jobs/index.d.ts +7 -0
- package/dist/jobs/index.js +24 -0
- package/dist/jobs/index.js.map +1 -0
- package/dist/jobs/jobMonitor.d.ts +46 -0
- package/dist/jobs/jobMonitor.js +102 -0
- package/dist/jobs/jobMonitor.js.map +1 -0
- package/dist/pacs/chrisPACS.d.ts +200 -0
- package/dist/pacs/chrisPACS.js +562 -0
- package/dist/pacs/chrisPACS.js.map +1 -0
- package/dist/path/chrisPath.d.ts +78 -0
- package/dist/path/chrisPath.js +190 -0
- package/dist/path/chrisPath.js.map +1 -0
- package/dist/pipelines/chrisPipeline.d.ts +86 -0
- package/dist/pipelines/chrisPipeline.js +180 -0
- package/dist/pipelines/chrisPipeline.js.map +1 -0
- package/dist/pluginmetas/chrisPluginMetas.d.ts +11 -0
- package/dist/pluginmetas/chrisPluginMetas.js +18 -0
- package/dist/pluginmetas/chrisPluginMetas.js.map +1 -0
- package/dist/plugins/chrisPluginMetaPlugins.d.ts +12 -0
- package/dist/plugins/chrisPluginMetaPlugins.js +19 -0
- package/dist/plugins/chrisPluginMetaPlugins.js.map +1 -0
- package/dist/plugins/chrisPlugins.d.ts +127 -0
- package/dist/plugins/chrisPlugins.js +528 -0
- package/dist/plugins/chrisPlugins.js.map +1 -0
- package/dist/resources/chrisEmbeddedResourceGroup.d.ts +73 -0
- package/dist/resources/chrisEmbeddedResourceGroup.js +148 -0
- package/dist/resources/chrisEmbeddedResourceGroup.js.map +1 -0
- package/dist/resources/chrisObjContext.d.ts +16 -0
- package/dist/resources/chrisObjContext.js +109 -0
- package/dist/resources/chrisObjContext.js.map +1 -0
- package/dist/resources/chrisResourceGroup.d.ts +30 -0
- package/dist/resources/chrisResourceGroup.js +47 -0
- package/dist/resources/chrisResourceGroup.js.map +1 -0
- package/dist/resources/chrisResources.d.ts +163 -0
- package/dist/resources/chrisResources.js +415 -0
- package/dist/resources/chrisResources.js.map +1 -0
- package/dist/tags/chrisTags.d.ts +11 -0
- package/dist/tags/chrisTags.js +18 -0
- package/dist/tags/chrisTags.js.map +1 -0
- package/dist/users/chrisUsers.d.ts +34 -0
- package/dist/users/chrisUsers.js +57 -0
- package/dist/users/chrisUsers.js.map +1 -0
- package/dist/utils/keypair.d.ts +77 -0
- package/dist/utils/keypair.js +144 -0
- package/dist/utils/keypair.js.map +1 -0
- package/dist/utils/result.d.ts +77 -0
- package/dist/utils/result.js +58 -0
- package/dist/utils/result.js.map +1 -0
- package/dist/utils/searchable.d.ts +143 -0
- package/dist/utils/searchable.js +212 -0
- package/dist/utils/searchable.js.map +1 -0
- package/dist/workflows/chrisWorkflows.d.ts +11 -0
- package/dist/workflows/chrisWorkflows.js +18 -0
- package/dist/workflows/chrisWorkflows.js.map +1 -0
- package/package.json +55 -0
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/**
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* @file ChRIS PACS Management
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*
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* Provides helpers to list PACS servers that the current CUBE knows about.
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*
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* @module
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*/
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import { Result } from "../utils/result.js";
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import { ChRISResourceGroup } from "../resources/chrisResourceGroup.js";
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import { FilteredResourceData, ListOptions } from "../resources/chrisResources.js";
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/**
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* Minimal shape of a PACS server as returned by the ChRIS API.
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*/
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export interface PACSServer {
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id: number;
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identifier?: string;
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name?: string;
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description?: string;
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[key: string]: unknown;
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}
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/**
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* Options for listing PACS servers (passed directly to the API).
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*/
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export interface PACSServerListOptions {
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identifier?: string;
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limit?: number;
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offset?: number;
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[key: string]: unknown;
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}
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/**
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* Group handler for PACS servers.
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*/
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export declare class ChRISPACSGroup extends ChRISResourceGroup {
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constructor();
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}
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/**
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* Minimal shape of a PACS query record.
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*/
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export interface PACSQueryRecord {
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id: number;
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title?: string;
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status?: string;
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pacs_id?: number;
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result?: unknown;
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[key: string]: unknown;
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}
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/**
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* Options for listing PACS queries.
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*/
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export interface PACSQueryListOptions extends ListOptions {
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pacs_id?: number;
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pacs_identifier?: string;
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}
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/**
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* Group handler for PACS queries.
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*/
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export declare class ChRISPACSQueryGroup extends ChRISResourceGroup {
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constructor();
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}
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/**
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* Resolve a PACS server identifier or ID to an ID and identifier.
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*
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* @param pacsserver - Numeric ID or identifier string.
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* @returns Result containing { id, identifier? } or Err on failure/ambiguity.
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*/
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export declare function pacsServer_resolve(pacsserver: string): Promise<Result<{
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id: number;
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identifier?: string;
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}>>;
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/**
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* Fetch all PACS servers visible to the current ChRIS connection.
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*
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* @param options - Optional search/pagination parameters (identifier, limit, offset).
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* @returns Result containing an array of PACS server records, or Err on failure.
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*/
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export declare function pacsServers_list(options?: PACSServerListOptions): Promise<Result<PACSServer[]>>;
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/**
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* List PACS queries with optional filtering.
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*
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* @param options - Search/pagination options (pacs_id, pacs_identifier, limit, offset, etc.).
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* @returns Result containing filtered resource data or Err.
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*/
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export declare function pacsQueries_list(options?: PACSQueryListOptions): Promise<Result<FilteredResourceData | null>>;
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/**
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* Data needed to create a PACS query.
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*/
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export interface PACSQueryCreateData {
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title: string;
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query: string;
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description?: string;
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execute?: boolean;
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}
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/**
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* Create a PACS query against a specific PACS server.
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*
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* @param pacsserver - PACS server ID or identifier.
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* @param data - Query creation data (title, query JSON string, optional description).
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* @returns Result containing a PACSQueryRecord or Err.
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*/
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export declare function pacsQueries_create(pacsserver: string, data: PACSQueryCreateData): Promise<Result<PACSQueryRecord>>;
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/**
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* Decoded PACS query result payload.
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*/
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export interface PACSQueryDecodedResult {
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raw: string;
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base64Decoded?: Buffer;
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zlibDecoded?: Buffer;
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gzipDecoded?: Buffer;
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text?: string;
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json?: unknown;
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}
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/**
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* Attempt to decode a PACS query result payload.
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*
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* @param queryId - PACS query ID.
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* @returns Result containing decoded forms (raw, decoded buffers, text, optional JSON) or Err on failure.
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*/
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export declare function pacsQuery_resultDecode(queryId: number): Promise<Result<PACSQueryDecodedResult>>;
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/**
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* Fetch a single PACS query record by ID.
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*
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* @param queryId - PACS query ID.
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* @returns Result containing a PACSQueryRecord (with current status/result) or Err.
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*/
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export declare function pacsQuery_get(queryId: number): Promise<Result<PACSQueryRecord>>;
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/**
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* Minimal shape of a PACS retrieve record.
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*/
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export interface PACSRetrieveRecord {
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id: number;
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pacs_query_id?: number;
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status?: string;
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creation_date?: string;
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[key: string]: unknown;
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}
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/**
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* Group handler for PACS retrieves.
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*/
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export declare class ChRISPACSRetrieveGroup extends ChRISResourceGroup {
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constructor();
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}
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/**
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* Create a PACS retrieve for a given query.
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* This triggers the external service to pull DICOM data from PACS to ChRIS.
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*
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* @param queryId - PACS query ID to retrieve data for.
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* @returns Result containing a PACSRetrieveRecord or Err.
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*/
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export declare function pacsRetrieve_create(queryId: number): Promise<Result<PACSRetrieveRecord>>;
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/**
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* List all retrieves for a given PACS query.
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*
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* @param queryId - PACS query ID.
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* @param options - Optional list options.
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* @returns Result containing an array of PACSRetrieveRecord or Err.
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*/
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export declare function pacsRetrieves_list(queryId: number, options?: ListOptions): Promise<Result<PACSRetrieveRecord[]>>;
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/**
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* Delete (cancel) a PACS retrieve.
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*
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* @param retrieveId - PACS retrieve ID to delete.
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* @returns Result containing void or Err.
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*/
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export declare function pacsRetrieve_delete(retrieveId: number): Promise<Result<void>>;
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/**
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* Status of a single series in the retrieve process.
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*/
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export interface SeriesRetrieveStatus {
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seriesInfo: Record<string, unknown>;
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seriesInstanceUID: string;
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seriesDescription?: string;
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expectedFiles: number;
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actualFiles: number;
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status: "pending" | "pulling" | "pulled" | "error";
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}
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/**
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* Study with series status information.
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*/
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export interface StudyRetrieveStatus {
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studyInfo: Record<string, unknown>;
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studyInstanceUID?: string;
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studyDescription?: string;
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series: SeriesRetrieveStatus[];
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}
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/**
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* Complete retrieve status report for a query.
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*/
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export interface PACSQueryStatusReport {
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queryId: number;
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retrieveStatus?: string;
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retrieveId?: number;
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studies: StudyRetrieveStatus[];
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}
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/**
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* Reports the retrieve status for a PACS query.
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*
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* @param queryId - ID of the PACS query to inspect.
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* @returns Result wrapping the status report, or Err on failure.
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*/
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export declare function pacsRetrieve_statusForQuery(queryId: number): Promise<Result<PACSQueryStatusReport>>;
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