@fnndsc/cumin 3.2.4 → 3.4.0

package/dist/plugins/chrisPlugins.d.ts

@@ -7,7 +7,7 @@
  *
  * @module
  */
-import Client, { PluginInstance } from "@fnndsc/chrisapi";
+import { type Client, type PluginInstance } from "../chrisapi/adapter.js";
 import { Dictionary } from "../resources/chrisResources.js";
 import { ChRISResourceGroup } from "../resources/chrisResourceGroup.js";
 import { ChRISElementsGet, QueryHits, ChRISObjectParams } from "../utils/keypair.js";

package/dist/plugins/chrisPlugins.js

@@ -8,13 +8,10 @@
  *
  * @module
  */
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.ChRISPlugin = exports.ChRISPluginInstanceGroup = exports.ChRISPluginGroup = void 0;
 exports.plugin_registerDirect = plugin_registerDirect;
-const chrisapi_1 = __importDefault(require("@fnndsc/chrisapi"));
+const adapter_js_1 = require("../chrisapi/adapter.js");
 const chrisConnection_js_1 = require("../connect/chrisConnection.js");
 const chrisContext_js_1 = require("../context/chrisContext.js");
 const chrisResources_js_1 = require("../resources/chrisResources.js");
@@ -263,7 +260,7 @@ class ChRISPlugin {
                     errorStack_js_1.errorStack.stack_push('error', 'ChRIS URL not found. Cannot create admin client.');
                     return null;
                 }
-                client = new chrisapi_1.default(url, { token: adminToken });
+                client = (0, adapter_js_1.client_create)(url, adminToken);
             }
             else {
                 client = await this.client_get();
@@ -273,11 +270,8 @@ class ChRISPlugin {
                 return null;
             }
             // Verify admin URL is available — non-admin users won't have this link
-            const clientAny = client;
-            if (!clientAny.adminUrl && clientAny.setUrls) {
-                await clientAny.setUrls().catch(() => undefined);
-            }
-            if (!clientAny.adminUrl) {
+            const adminUrl = await (0, adapter_js_1.client_adminUrlEnsure)(client);
+            if (!adminUrl) {
                 errorStack_js_1.errorStack.stack_push('error', 'Admin credentials required to register plugins. Authentication failed.');
                 return null;
             }
@@ -287,8 +281,9 @@ class ChRISPlugin {
             const computeNames = computeResources.join(',');
             const pluginFileObj = { fname: pluginBlob };
             const pluginAdmin = await client.adminUploadPlugin({ compute_names: computeNames }, pluginFileObj);
-            if (pluginAdmin && pluginAdmin.data) {
-                return pluginAdmin.data;
+            const pluginAdminData = (0, adapter_js_1.itemData_get)(pluginAdmin);
+            if (pluginAdminData) {
+                return pluginAdminData;
             }
             errorStack_js_1.errorStack.stack_push('error', 'Failed to register plugin. No data in response.');
             return null;
@@ -367,13 +362,15 @@ class ChRISPlugin {
             }
             // Try searching by name first
             let pluginList = await client.getPlugins({ name_exact: nameOrImage, limit: 1 });
-            if (pluginList && pluginList.data && pluginList.data.length > 0) {
-                return pluginList.data[0];
+            const byName = (0, adapter_js_1.listData_get)(pluginList);
+            if (byName.length > 0) {
+                return byName[0];
             }
             // Try searching by dock_image
             pluginList = await client.getPlugins({ dock_image: nameOrImage, limit: 1 });
-            if (pluginList && pluginList.data && pluginList.data.length > 0) {
-                return pluginList.data[0];
+            const byImage = (0, adapter_js_1.listData_get)(pluginList);
+            if (byImage.length > 0) {
+                return byImage[0];
             }
             return null;
         }
@@ -468,8 +465,8 @@ class ChRISPlugin {
             if (!plugin) {
                 return [];
             }
-            const computeResourceList = await plugin.getPluginComputeResources();
-            const resources = computeResourceList.data || [];
+            const computeResourceList = await (0, adapter_js_1.resource_call)(plugin, 'getPluginComputeResources');
+            const resources = (0, adapter_js_1.listData_get)(computeResourceList);
             return resources.map((r) => r.name);
         }
         catch (error) {
@@ -512,7 +509,7 @@ async function plugin_registerDirect(pluginData, computeResources) {
             data.compute_resources = computeResources;
         }
         // Call the internal _post method directly (legacy API)
-        const response = await pluginList._post(data);
+        const response = await (0, adapter_js_1.resource_call)(pluginList, '_post', data);
         if (response && response.data) {
             return (0, result_js_1.Ok)(response.data);
         }

package/dist/plugins/chrisPlugins.js.map

@@ -1 +1 @@
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package/dist/resources/chrisEmbeddedResourceGroup.d.ts

@@ -43,7 +43,7 @@ export interface ContextSpec {
  *
  * This function parses strings like "folder:/path/to/folder" or "plugin:123" into an object
  * containing the type (the prefix before the first delimiter) and the value (the rest of the string).
- * If the path contains extra delimiters (e.g. "/pacs/queries/2601_AccessionNumber:22548684"), this
+ * If the path contains extra delimiters (e.g. "/pacs/queries/2601_AccessionNumber:12345678"), this
  * function correctly preserves those extra delimiters in the value component.
  *
  * @param context - The context string to be split. Must be a string.

package/dist/resources/chrisEmbeddedResourceGroup.js

@@ -48,7 +48,7 @@ exports.ChRISContextSpecError = ChRISContextSpecError;
  *
  * This function parses strings like "folder:/path/to/folder" or "plugin:123" into an object
  * containing the type (the prefix before the first delimiter) and the value (the rest of the string).
- * If the path contains extra delimiters (e.g. "/pacs/queries/2601_AccessionNumber:22548684"), this
+ * If the path contains extra delimiters (e.g. "/pacs/queries/2601_AccessionNumber:12345678"), this
  * function correctly preserves those extra delimiters in the value component.
  *
  * @param context - The context string to be split. Must be a string.

package/dist/resources/chrisResourceGroup.d.ts

@@ -7,7 +7,7 @@
  *
  * @module
  */
-import Client from "@fnndsc/chrisapi";
+import type { Client } from "../chrisapi/adapter.js";
 import { ChRISResource } from "../resources/chrisResources.js";
 /**
  * Abstract base class for a group of ChRIS resources.

package/dist/resources/chrisResources.d.ts

@@ -6,8 +6,7 @@
  *
  * @module
  */
-import Client from "@fnndsc/chrisapi";
-import { ListResource, Resource, ItemResource } from "@fnndsc/chrisapi";
+import { type Client, type ListResource, type Resource, type ItemResource } from "../chrisapi/adapter.js";
 /**
  * A simple record with string keys and unknown values.
  */

package/dist/resources/chrisResources.js

@@ -10,7 +10,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.ChRISResource = void 0;
 exports.resourceFields_get = resourceFields_get;
-const chrisapi_1 = require("@fnndsc/chrisapi");
+const adapter_js_1 = require("../chrisapi/adapter.js");
 const chrisConnection_js_1 = require("../connect/chrisConnection.js");
 const config_js_1 = require("../config/config.js");
 /**
@@ -73,7 +73,7 @@ class ChRISResource {
      * @returns A Promise resolving to true on success, false otherwise.
      */
     async resourceItem_delete(id) {
-        if (!(this._resourceCollection instanceof chrisapi_1.ListResource)) {
+        if (!(0, adapter_js_1.resource_isList)(this._resourceCollection)) {
             return false;
         }
         const res = this._resourceCollection?.getItem(id);
@@ -94,7 +94,7 @@ class ChRISResource {
         if (!resources || !resources.collection) {
             return null;
         }
-        return resources.collection.items.map((item) => ({
+        return (0, adapter_js_1.collectionItems_get)(resources).map((item) => ({
             data: item.data,
             href: item.href,
             links: item.links,
@@ -139,7 +139,7 @@ class ChRISResource {
         }
     }
     get hasNextPage() {
-        if (this._resourceCollection instanceof chrisapi_1.ListResource) {
+        if ((0, adapter_js_1.resource_isList)(this._resourceCollection)) {
             return this._resourceCollection.hasNext;
         }
         return false;
@@ -198,7 +198,7 @@ class ChRISResource {
      */
     async resources_listAndFilterByOptions(options) {
         const results = this.resources_filterByFields(await this.resourceFields_get(await this.resources_getList(options)));
-        if (results && this._resourceCollection instanceof chrisapi_1.ListResource) {
+        if (results && (0, adapter_js_1.resource_isList)(this._resourceCollection)) {
             const total = this._resourceCollection.totalCount;
             if (total >= 0)
                 results.totalCount = total;
@@ -292,7 +292,7 @@ class ChRISResource {
             return null;
         }
         const resources = await this.resourceMethod(params);
-        if (!(this._resourceCollection instanceof chrisapi_1.ListResource)) {
+        if (!(0, adapter_js_1.resource_isList)(this._resourceCollection)) {
             return null;
         }
         this._resourceArray = this._resourceCollection?.getItems();
@@ -376,7 +376,7 @@ class ChRISResource {
             return params;
         }
         this._resourceCollection = resources;
-        if (!(this._resourceCollection instanceof chrisapi_1.ListResource)) {
+        if (!(0, adapter_js_1.resource_isList)(this._resourceCollection)) {
             return null;
         }
         this._resourceArray = this._resourceCollection?.getItems();

package/dist/resources/chrisResources.js.map

@@ -1 +1 @@
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package/dist/users/chrisUsers.js

@@ -8,6 +8,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.groups_getAll = groups_getAll;
 exports.currentUser_get = currentUser_get;
 const chrisConnection_js_1 = require("../connect/chrisConnection.js");
+const adapter_js_1 = require("../chrisapi/adapter.js");
 const errorStack_js_1 = require("../error/errorStack.js");
 const result_js_1 = require("../utils/result.js");
 /**
@@ -23,7 +24,7 @@ async function groups_getAll() {
             return (0, result_js_1.Err)();
         }
         const groupList = await client.getGroups({ limit: 1000 });
-        const groups = groupList.data || [];
+        const groups = (0, adapter_js_1.listData_get)(groupList);
         return (0, result_js_1.Ok)(groups);
     }
     catch (error) {
@@ -45,7 +46,11 @@ async function currentUser_get() {
             return (0, result_js_1.Err)();
         }
         const user = await client.getUser();
-        const userData = user.data;
+        const userData = (0, adapter_js_1.itemData_get)(user);
+        if (!userData) {
+            errorStack_js_1.errorStack.stack_push('error', 'Current user response carried no data.');
+            return (0, result_js_1.Err)();
+        }
         return (0, result_js_1.Ok)(userData);
     }
     catch (error) {

package/dist/users/chrisUsers.js.map

@@ -1 +1 @@
-{"version":3,"file":"chrisUsers.js","sourceRoot":"","sources":["../../src/users/chrisUsers.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;AA8BH,sCAiBC;AAOD,0CAiBC;AArED,sEAAgE;AAEhE,0DAAoD;AACpD,kDAAqD;AAoBrD;;;;GAIG;AACI,KAAK,UAAU,aAAa;IACjC,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,oCAAe,CAAC,UAAU,EAAE,CAAC;QAClD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,wCAAwC,CAAC,CAAC;YACzE,OAAO,IAAA,eAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,SAAS,GAAc,MAAM,MAAM,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC;QACrE,MAAM,MAAM,GAAkB,SAAS,CAAC,IAAgC,IAAI,EAAE,CAAC;QAE/E,OAAO,IAAA,cAAE,EAAC,MAAM,CAAC,CAAC;IACpB,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,MAAM,GAAG,GAAW,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QAC3E,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,2BAA2B,GAAG,EAAE,CAAC,CAAC;QACjE,OAAO,IAAA,eAAG,GAAE,CAAC;IACf,CAAC;AACH,CAAC;AAED;;;;GAIG;AACI,KAAK,UAAU,eAAe;IACnC,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,oCAAe,CAAC,UAAU,EAAE,CAAC;QAClD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,wCAAwC,CAAC,CAAC;YACzE,OAAO,IAAA,eAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,IAAI,GAAG,MAAM,MAAM,CAAC,OAAO,EAAE,CAAC;QACpC,MAAM,QAAQ,GAAc,IAAI,CAAC,IAA4B,CAAC;QAE9D,OAAO,IAAA,cAAE,EAAC,QAAQ,CAAC,CAAC;IACtB,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,MAAM,GAAG,GAAW,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QAC3E,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,iCAAiC,GAAG,EAAE,CAAC,CAAC;QACvE,OAAO,IAAA,eAAG,GAAE,CAAC;IACf,CAAC;AACH,CAAC"}
+{"version":3,"file":"chrisUsers.js","sourceRoot":"","sources":["../../src/users/chrisUsers.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;AA8BH,sCAiBC;AAOD,0CAqBC;AAzED,sEAAgE;AAChE,uDAAoF;AACpF,0DAAoD;AACpD,kDAAqD;AAoBrD;;;;GAIG;AACI,KAAK,UAAU,aAAa;IACjC,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,oCAAe,CAAC,UAAU,EAAE,CAAC;QAClD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,wCAAwC,CAAC,CAAC;YACzE,OAAO,IAAA,eAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,SAAS,GAAc,MAAM,MAAM,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC;QACrE,MAAM,MAAM,GAAiB,IAAA,yBAAY,EAAa,SAAS,CAAC,CAAC;QAEjE,OAAO,IAAA,cAAE,EAAC,MAAM,CAAC,CAAC;IACpB,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,MAAM,GAAG,GAAW,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QAC3E,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,2BAA2B,GAAG,EAAE,CAAC,CAAC;QACjE,OAAO,IAAA,eAAG,GAAE,CAAC;IACf,CAAC;AACH,CAAC;AAED;;;;GAIG;AACI,KAAK,UAAU,eAAe;IACnC,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,oCAAe,CAAC,UAAU,EAAE,CAAC;QAClD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,wCAAwC,CAAC,CAAC;YACzE,OAAO,IAAA,eAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,IAAI,GAAG,MAAM,MAAM,CAAC,OAAO,EAAE,CAAC;QACpC,MAAM,QAAQ,GAAqB,IAAA,yBAAY,EAAY,IAAI,CAAC,CAAC;QACjE,IAAI,CAAC,QAAQ,EAAE,CAAC;YACd,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,wCAAwC,CAAC,CAAC;YACzE,OAAO,IAAA,eAAG,GAAE,CAAC;QACf,CAAC;QAED,OAAO,IAAA,cAAE,EAAC,QAAQ,CAAC,CAAC;IACtB,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,MAAM,GAAG,GAAW,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QAC3E,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,iCAAiC,GAAG,EAAE,CAAC,CAAC;QACvE,OAAO,IAAA,eAAG,GAAE,CAAC;IACf,CAAC;AACH,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fnndsc/cumin",
-  "version": "3.2.4",
+  "version": "3.4.0",
   "description": "Utility library for ChILI and other ChRIS-related JavaScript applications",
   "repository": {
     "type": "git",
@@ -42,10 +42,11 @@
   "devDependencies": {
     "@types/chalk": "^0.4.31",
     "@types/figlet": "^1.5.8",
-    "@types/jest": "^29.5.12",
-    "jest": "^29.7.0",
-    "ts-jest": "^29.1.5",
-    "typescript": "^5.0.0"
+    "@types/jest": "^30.0.0",
+    "jest": "^30.2.0",
+    "ts-jest": "^29.4.5",
+    "typescript": "^5.0.0",
+    "@types/node": "^22.0.0"
   },
   "dependencies": {
     "@fnndsc/chrisapi": "^1.25.0",