@fnndsc/cumin 3.17.0 → 3.18.0

package/dist/cache/queryIndexCheckpoint.js

@@ -0,0 +1,159 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.QUERY_INDEX_CHECKPOINT_FLOOR_MS = void 0;
+exports.queryIndexCheckpointPath_get = queryIndexCheckpointPath_get;
+exports.queryIndexCheckpoint_restore = queryIndexCheckpoint_restore;
+exports.queryIndexCheckpoint_save = queryIndexCheckpoint_save;
+exports.queryIndexCheckpoint_watch = queryIndexCheckpoint_watch;
+/**
+ * @file Persistent checkpoint for the PACS query index.
+ *
+ * The index is expensive to build and cheap to keep: the back-fill walks a
+ * collection whose every row drags a compressed result, so the sweep is a
+ * cost worth paying once rather than at every boot. Written to disk and
+ * restored at start, it comes back with its floor, and the sweep resumes
+ * from there instead of starting over.
+ *
+ * Same shape as the listing checkpoint next door: one identity-keyed,
+ * mode-0600 file under a mode-0700 folder, written by same-directory atomic
+ * rename, throttled so a burst of queries coalesces into one write.
+ *
+ * @module
+ */
+const crypto_1 = require("crypto");
+const fs_1 = require("fs");
+const os_1 = require("os");
+const path_1 = require("path");
+const queryIndex_1 = require("./queryIndex");
+const QUERY_INDEX_SCHEMA = 1;
+/** Minimum spacing between two writes of the query-index checkpoint. */
+exports.QUERY_INDEX_CHECKPOINT_FLOOR_MS = 10 * 1000;
+/** Returns the default directory for persistent index files. */
+function queryIndexRoot_get() {
+    const cacheHome = process.env.XDG_CACHE_HOME ?? (0, path_1.join)((0, os_1.homedir)(), '.cache');
+    return (0, path_1.join)(cacheHome, 'chell', 'vfs');
+}
+/**
+ * Builds the identity-keyed checkpoint path without exposing the identity.
+ *
+ * @param identity - Canonical ChRIS identity string.
+ * @param root - Checkpoint directory override.
+ * @returns Versioned checkpoint path.
+ */
+function queryIndexCheckpointPath_get(identity, root = queryIndexRoot_get()) {
+    const key = (0, crypto_1.createHash)('sha256').update(identity).digest('hex').slice(0, 16);
+    return (0, path_1.join)(root, `pacs-queries-${key}-v${QUERY_INDEX_SCHEMA}.json`);
+}
+/** Reports whether a value is a structurally valid persisted entry. */
+function entry_check(value) {
+    if (!value || typeof value !== 'object')
+        return false;
+    const entry = value;
+    return typeof entry.key === 'string' && entry.key.length > 0 &&
+        typeof entry.queryId === 'number' && Number.isFinite(entry.queryId) &&
+        typeof entry.server === 'string' &&
+        typeof entry.owner === 'string' &&
+        typeof entry.answeredAt === 'string' && !Number.isNaN(Date.parse(entry.answeredAt)) &&
+        typeof entry.hasResult === 'boolean' &&
+        entry.criteria !== undefined && entry.criteria !== null && typeof entry.criteria === 'object';
+}
+/** Reports whether parsed JSON is a compatible checkpoint for an identity. */
+function file_check(value, identity) {
+    if (!value || typeof value !== 'object')
+        return false;
+    const file = value;
+    return file.schemaVersion === QUERY_INDEX_SCHEMA &&
+        file.identity === identity &&
+        typeof file.writtenAt === 'string' &&
+        !Number.isNaN(Date.parse(file.writtenAt)) &&
+        (file.floor === null || (typeof file.floor === 'string' && !Number.isNaN(Date.parse(file.floor)))) &&
+        Array.isArray(file.entries) &&
+        file.entries.every(entry_check);
+}
+/**
+ * Restores a matching, validated checkpoint into the index.
+ *
+ * A rejected file is not an error worth raising: the index is advisory, so
+ * an unreadable checkpoint costs a sweep and nothing else.
+ *
+ * @param identity - Canonical ChRIS identity string.
+ * @param root - Checkpoint directory override.
+ * @returns Restoration outcome without throwing for absent or invalid files.
+ */
+async function queryIndexCheckpoint_restore(identity, root = queryIndexRoot_get()) {
+    try {
+        const raw = await fs_1.promises.readFile(queryIndexCheckpointPath_get(identity, root), 'utf8');
+        const parsed = JSON.parse(raw);
+        if (!file_check(parsed, identity)) {
+            return { restored: false, count: 0, reason: 'incompatible query index' };
+        }
+        const snapshot = { entries: parsed.entries, floor: parsed.floor };
+        (0, queryIndex_1.queryIndex_get)().snapshot_restore(snapshot);
+        return { restored: true, count: parsed.entries.length, writtenAt: parsed.writtenAt };
+    }
+    catch (error) {
+        const code = error.code;
+        return {
+            restored: false,
+            count: 0,
+            reason: code === 'ENOENT' ? 'no query index' : (error instanceof Error ? error.message : String(error)),
+        };
+    }
+}
+/**
+ * Atomically saves the query index.
+ *
+ * @param identity - Canonical ChRIS identity string.
+ * @param root - Checkpoint directory override.
+ * @returns Promise resolved after the mode-0600 file is durable in place.
+ */
+async function queryIndexCheckpoint_save(identity, root = queryIndexRoot_get()) {
+    const path = queryIndexCheckpointPath_get(identity, root);
+    const temporaryPath = `${path}.${process.pid}-${(0, crypto_1.randomUUID)()}.tmp`;
+    const snapshot = (0, queryIndex_1.queryIndex_get)().snapshot_create();
+    const file = {
+        schemaVersion: QUERY_INDEX_SCHEMA,
+        identity,
+        writtenAt: new Date().toISOString(),
+        floor: snapshot.floor,
+        entries: snapshot.entries,
+    };
+    await fs_1.promises.mkdir((0, path_1.dirname)(path), { recursive: true, mode: 0o700 });
+    await fs_1.promises.chmod((0, path_1.dirname)(path), 0o700);
+    await fs_1.promises.writeFile(temporaryPath, `${JSON.stringify(file)}\n`, { encoding: 'utf8', mode: 0o600 });
+    await fs_1.promises.rename(temporaryPath, path);
+    await fs_1.promises.chmod(path, 0o600);
+}
+/**
+ * Starts a throttled checkpoint writer for index mutations: a write at
+ * least `delayMs` after the first pending mutation, and no more often than
+ * once per `floorMs`, the last change never dropped.
+ *
+ * @param identity - Canonical ChRIS identity string.
+ * @param root - Checkpoint directory override.
+ * @param delayMs - Debounce interval in milliseconds.
+ * @param floorMs - Minimum spacing between two writes.
+ * @returns Function that stops watching and cancels a pending save.
+ */
+function queryIndexCheckpoint_watch(identity, root = queryIndexRoot_get(), delayMs = 2000, floorMs = exports.QUERY_INDEX_CHECKPOINT_FLOOR_MS) {
+    let timer = null;
+    let lastWrite = 0;
+    const listener_remove = (0, queryIndex_1.queryIndex_get)().changeListener_add(() => {
+        if (timer)
+            return;
+        const wait = Math.max(delayMs, lastWrite + floorMs - Date.now());
+        timer = setTimeout(() => {
+            timer = null;
+            lastWrite = Date.now();
+            void queryIndexCheckpoint_save(identity, root).catch(() => { });
+        }, wait);
+        timer.unref();
+    });
+    return () => {
+        listener_remove();
+        if (timer)
+            clearTimeout(timer);
+        timer = null;
+    };
+}
+//# sourceMappingURL=queryIndexCheckpoint.js.map

package/dist/cache/queryIndexCheckpoint.js.map

@@ -0,0 +1 @@
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package/dist/chrisapi/contract.d.ts

@@ -333,6 +333,33 @@ export interface ComputeResourceData {
     name?: string;
     [key: string]: unknown;
 }
+/**
+ * Wire shape of one registered plugin row, as served by `getPlugins`.
+ *
+ * @property id - Plugin id.
+ * @property name - The plugin's registered name (`pl-dcm2niix`).
+ * @property version - Its registered version.
+ * @property type - `ds`, `fs` or `ts`: what the node consumes and produces.
+ * @property title - The human title, when the plugin declared one.
+ * @property authors - Declared authorship.
+ * @property description - What the plugin does.
+ * @property documentation - Where its source or docs live.
+ * @property category - The plugin's declared category.
+ * @property creation_date - ISO registration timestamp.
+ */
+export interface PluginData {
+    id?: number;
+    name?: string;
+    version?: string;
+    type?: string;
+    title?: string;
+    authors?: string;
+    description?: string;
+    documentation?: string;
+    category?: string;
+    creation_date?: string;
+    [key: string]: unknown;
+}
 /**
  * Typed handle over one plugin detail resource (metadata surfaces only).
  */
@@ -412,6 +439,41 @@ export declare function collectionPage_wrap<T>(collection: {
     totalCount: number;
     hasNextPage: boolean;
 }, rows: T[]): ListPage<T>;
+/**
+ * One registered plugin resolved from CUBE: its row, and a handle onto the
+ * sub-collections that hang off it.
+ *
+ * @property data - The plugin's wire payload.
+ * @property handle - Typed access to its parameters and compute resources.
+ */
+export interface PluginFound {
+    data: PluginData;
+    handle: PluginHandle;
+}
+/**
+ * Fetches one registered plugin by exact name and version.
+ *
+ * @param client - Connected chrisapi client.
+ * @param name - Exact plugin name.
+ * @param version - Exact plugin version.
+ * @returns The plugin and a handle onto it, or null when CUBE has no such
+ *   plugin at that version.
+ * @throws {Error} Propagates chrisapi/network errors.
+ */
+export declare function plugin_find(client: Client, name: string, version: string): Promise<PluginFound | null>;
+/**
+ * Reads every parameter a plugin declares, to exhaustion.
+ *
+ * A plugin's parameter list is the one collection a surface cannot ask
+ * twice about: a form built from a truncated list silently omits flags the
+ * plugin requires. The single-page `{ limit: 100 }` idiom this replaces lost
+ * the tail of any plugin with more, and said nothing.
+ *
+ * @param handle - A plugin handle.
+ * @returns Every declared parameter, in server order.
+ * @throws {Error} Propagates chrisapi/network errors.
+ */
+export declare function pluginParameters_drain(handle: PluginHandle): Promise<PluginParameterData[]>;
 /**
  * Fetches one registered pipeline's detail resource as a typed handle.
  *
@@ -430,6 +492,19 @@ export declare function pipeline_get(client: Client, pipelineID: number): Promis
  * @throws {Error} Propagates chrisapi/network errors.
  */
 export declare function pipelineSourceFilesPage_get(client: Client, params: Record<string, unknown>): Promise<ListPage<PipelineSourceFileData>>;
+/**
+ * Drains every pipeline source file matching a filter.
+ *
+ * The registered pipelines' source files are a collection, not a page: a
+ * caller asking which file a pipeline came from wants the answer, and
+ * `{ limit: 1000 }` was a guess at how many that could be (#401).
+ *
+ * @param client - Connected chrisapi client.
+ * @param filter - Server-side filter (a `pipeline_id`, an `fname`), or none.
+ * @returns Every matching source file, in server order.
+ * @throws {Error} Propagates chrisapi/network errors.
+ */
+export declare function pipelineSourceFiles_drain(client: Client, filter?: Record<string, unknown>): Promise<PipelineSourceFileData[]>;
 /**
  * Creates a CUBE download token for authenticated file access and LONK.
  *

package/dist/chrisapi/contract.js

@@ -32,8 +32,11 @@ exports.publicFeedsPage_get = publicFeedsPage_get;
 exports.pluginInstancesPage_get = pluginInstancesPage_get;
 exports.pluginInstance_get = pluginInstance_get;
 exports.collectionPage_wrap = collectionPage_wrap;
+exports.plugin_find = plugin_find;
+exports.pluginParameters_drain = pluginParameters_drain;
 exports.pipeline_get = pipeline_get;
 exports.pipelineSourceFilesPage_get = pipelineSourceFilesPage_get;
+exports.pipelineSourceFiles_drain = pipelineSourceFiles_drain;
 exports.downloadToken_create = downloadToken_create;
 const adapter_1 = require("./adapter");
 /**
@@ -244,6 +247,48 @@ function pluginHandle_wrap(resource) {
         },
     };
 }
+/**
+ * Fetches one registered plugin by exact name and version.
+ *
+ * @param client - Connected chrisapi client.
+ * @param name - Exact plugin name.
+ * @param version - Exact plugin version.
+ * @returns The plugin and a handle onto it, or null when CUBE has no such
+ *   plugin at that version.
+ * @throws {Error} Propagates chrisapi/network errors.
+ */
+async function plugin_find(client, name, version) {
+    const page = await (0, adapter_1.resource_call)(client, 'getPlugins', {
+        name_exact: name,
+        version,
+        limit: 1,
+    });
+    const resources = typeof page?.getItems === 'function'
+        ? (0, adapter_1.items_get)(page)
+        : [];
+    const resource = resources[0];
+    if (resource === undefined)
+        return null;
+    const data = (0, adapter_1.itemData_get)(resource);
+    if (data === null)
+        return null;
+    return { data, handle: pluginHandle_wrap(resource) };
+}
+/**
+ * Reads every parameter a plugin declares, to exhaustion.
+ *
+ * A plugin's parameter list is the one collection a surface cannot ask
+ * twice about: a form built from a truncated list silently omits flags the
+ * plugin requires. The single-page `{ limit: 100 }` idiom this replaces lost
+ * the tail of any plugin with more, and said nothing.
+ *
+ * @param handle - A plugin handle.
+ * @returns Every declared parameter, in server order.
+ * @throws {Error} Propagates chrisapi/network errors.
+ */
+async function pluginParameters_drain(handle) {
+    return listPages_drain((offset, limit) => handle.parametersPage_get({ limit, offset }));
+}
 /**
  * Fetches one registered pipeline's detail resource as a typed handle.
  *
@@ -306,6 +351,21 @@ async function pipeline_get(client, pipelineID) {
 async function pipelineSourceFilesPage_get(client, params) {
     return listPageFlexible_wrap(await (0, adapter_1.resource_call)(client, 'getPipelineSourceFiles', params));
 }
+/**
+ * Drains every pipeline source file matching a filter.
+ *
+ * The registered pipelines' source files are a collection, not a page: a
+ * caller asking which file a pipeline came from wants the answer, and
+ * `{ limit: 1000 }` was a guess at how many that could be (#401).
+ *
+ * @param client - Connected chrisapi client.
+ * @param filter - Server-side filter (a `pipeline_id`, an `fname`), or none.
+ * @returns Every matching source file, in server order.
+ * @throws {Error} Propagates chrisapi/network errors.
+ */
+async function pipelineSourceFiles_drain(client, filter = {}) {
+    return listPages_drain((offset, limit) => pipelineSourceFilesPage_get(client, { ...filter, limit, offset }));
+}
 /**
  * Creates a CUBE download token for authenticated file access and LONK.
  *

package/dist/chrisapi/contract.js.map

@@ -1 +1 @@
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+{"version":3,"file":"contract.js","sourceRoot":"","sources":["../../src/chrisapi/contract.ts"],"names":[],"mappings":";AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;;AAoFH,wCA4BC;AAcD,0CASC;AAwJD,sCAKC;AAWD,kDAMC;AAUD,0DAOC;AAUD,gDAuCC;AA6MD,kDASC;AA6CD,kCAmBC;AAcD,wDAOC;AAUD,oCAwDC;AAUD,kEAOC;AAcD,8DAQC;AASD,oDAQC;AA1xBD,uCAOmB;AAsDnB;;;;;;;;;;;;;;;;;;;;GAoBG;AACI,KAAK,SAAS,CAAC,CAAC,cAAc,CACnC,UAAmE,EACnE,UAA2B,EAAE;IAE7B,MAAM,QAAQ,GAAW,OAAO,CAAC,QAAQ,IAAI,GAAG,CAAC;IACjD,IAAI,MAAM,GAAW,OAAO,CAAC,WAAW,IAAI,CAAC,CAAC;IAC9C,IAAI,KAAK,GAAkB,OAAO,CAAC,UAAU,IAAI,IAAI,CAAC;IAEtD,OAAO,IAAI,EAAE,CAAC;QACZ,MAAM,IAAI,GAAgB,MAAM,UAAU,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC;QAC7D,MAAM,KAAK,GAAQ,IAAI,CAAC,IAAI,CAAC;QAC7B,IAAI,KAAK,KAAK,IAAI,IAAI,IAAI,CAAC,UAAU,KAAK,IAAI,EAAE,CAAC;YAC/C,KAAK,GAAG,IAAI,CAAC,UAAU,CAAC;QAC1B,CAAC;QACD,sEAAsE;QACtE,uEAAuE;QACvE,qEAAqE;QACrE,MAAM,OAAO,GAAW,IAAI,CAAC,YAAY,IAAI,KAAK,CAAC,MAAM,CAAC;QAC1D,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC;QAC/B,IAAI,OAAO,KAAK,CAAC;YAAE,OAAO;QAC1B,IAAI,IAAI,CAAC,OAAO,KAAK,KAAK;YAAE,OAAO;QACnC,IAAI,KAAK,KAAK,IAAI,IAAI,MAAM,GAAG,OAAO,IAAI,KAAK;YAAE,OAAO;QACxD,yEAAyE;QACzE,oEAAoE;QACpE,0CAA0C;QAC1C,IAAI,KAAK,KAAK,IAAI,IAAI,IAAI,CAAC,OAAO,KAAK,IAAI,IAAI,OAAO,GAAG,QAAQ;YAAE,OAAO;QAC1E,MAAM,IAAI,OAAO,CAAC;IACpB,CAAC;AACH,CAAC;AAED;;;;;;;;;;;GAWG;AACI,KAAK,UAAU,eAAe,CACnC,UAAmE,EACnE,UAA2B,EAAE;IAE7B,MAAM,IAAI,GAAQ,EAAE,CAAC;IACrB,IAAI,KAAK,EAAE,MAAM,IAAI,IAAI,cAAc,CAAC,UAAU,EAAE,OAAO,CAAC,EAAE,CAAC;QAC7D,IAAI,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC;IAC3B,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAkID;;;;;GAKG;AACH,SAAS,aAAa,CAAI,IAAiC;IACzD,MAAM,KAAK,GAAY,IAAI,EAAE,UAAU,CAAC;IACxC,OAAO;QACL,IAAI,EAAE,IAAA,sBAAY,EAAI,IAAI,IAAI,SAAS,CAAC;QACxC,UAAU,EAAE,OAAO,KAAK,KAAK,QAAQ,IAAI,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI;KACnE,CAAC;AACJ,CAAC;AAED;;;;;;;GAOG;AACI,KAAK,UAAU,aAAa,CACjC,MAAc,EACd,MAA+B;IAE/B,OAAO,aAAa,CAAW,MAAM,IAAA,uBAAa,EAAW,MAAM,EAAE,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC;AAC5F,CAAC;AAED;;;;;;;;GAQG;AACI,KAAK,UAAU,mBAAmB,CACvC,MAAc,EACd,MAA+B;IAE/B,IAAI,CAAC,IAAA,uBAAa,EAAC,MAAM,EAAE,gBAAgB,CAAC;QAAE,OAAO,IAAI,CAAC;IAC1D,OAAO,aAAa,CAAW,MAAM,IAAA,uBAAa,EAAW,MAAM,EAAE,gBAAgB,EAAE,MAAM,CAAC,CAAC,CAAC;AAClG,CAAC;AAED;;;;;;;GAOG;AACI,KAAK,UAAU,uBAAuB,CAC3C,MAAc,EACd,MAA+B;IAE/B,OAAO,aAAa,CAClB,MAAM,IAAA,uBAAa,EAAW,MAAM,EAAE,oBAAoB,EAAE,MAAM,CAAC,CACpE,CAAC;AACJ,CAAC;AAED;;;;;;;GAOG;AACI,KAAK,UAAU,kBAAkB,CACtC,MAAc,EACd,UAAkB;IAElB,MAAM,QAAQ,GAA8B,MAAM,IAAA,uBAAa,EAC7D,MAAM,EACN,mBAAmB,EACnB,UAAU,CACX,CAAC;IACF,IAAI,CAAC,QAAQ;QAAE,OAAO,IAAI,CAAC;IAC3B,MAAM,IAAI,GAA8B,IAAA,sBAAY,EAAqB,QAAQ,CAAC,CAAC;IAEnF,OAAO;QACL,IAAI;QAEJ,KAAK,CAAC,kBAAkB,CACtB,MAAyC;YAEzC,2EAA2E;YAC3E,OAAO,qBAAqB,CAC1B,MAAM,IAAA,uBAAa,EAAW,QAAQ,EAAE,eAAe,EAAE,MAAM,CAAC,CACjE,CAAC;QACJ,CAAC;QAED,KAAK,CAAC,UAAU,CAAC,MAAc;YAC7B,MAAM,IAAA,uBAAa,EAAU,QAAQ,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC;QAC5D,CAAC;QAED,KAAK,CAAC,MAAM;YACV,MAAM,IAAA,uBAAa,EAAU,QAAQ,EAAE,QAAQ,CAAC,CAAC;QACnD,CAAC;QAED,KAAK,CAAC,QAAQ;YACZ,IAAI,CAAC,IAAA,uBAAa,EAAC,QAAQ,EAAE,SAAS,CAAC;gBAAE,OAAO,IAAI,CAAC;YACrD,MAAM,IAAI,GAAuB,MAAM,IAAA,uBAAa,EAAqB,QAAQ,EAAE,SAAS,CAAC,CAAC;YAC9F,MAAM,IAAI,GAA6B,IAAA,sBAAY,EAAoB,IAAI,CAAC,CAAC;YAC7E,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,GAAsB,EAAU,EAAE,CAAC,CAAC,OAAO,GAAG,CAAC,GAAG,KAAK,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC/G,CAAC;KACF,CAAC;AACJ,CAAC;AA2KD;;;;;;GAMG;AACH,SAAS,qBAAqB,CAAI,IAAiC;IACjE,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,OAAO,IAAI,EAAE,QAAQ,KAAK,UAAU,EAAE,CAAC;QACtE,OAAO,aAAa,CAAI,IAAI,CAAC,CAAC;IAChC,CAAC;IACD,MAAM,MAAM,GAA8B,IAAA,mBAAS,EAAqB,IAA+B,CAAC,CAAC;IACzG,MAAM,IAAI,GAAQ,MAAM;SACrB,GAAG,CAAC,CAAC,IAAwB,EAAY,EAAE,CAAC,IAAA,sBAAY,EAAI,IAAI,CAAC,CAAC;SAClE,MAAM,CAAC,CAAC,GAAa,EAAY,EAAE,CAAC,GAAG,KAAK,IAAI,CAAC,CAAC;IACrD,MAAM,KAAK,GAAY,IAAI,EAAE,UAAU,CAAC;IACxC,OAAO;QACL,IAAI,EAAE,IAAI;QACV,UAAU,EAAE,OAAO,KAAK,KAAK,QAAQ,IAAI,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI;QAClE,YAAY,EAAE,MAAM,CAAC,MAAM;KAC5B,CAAC;AACJ,CAAC;AAED;;;;;;;;;;GAUG;AACH,SAAgB,mBAAmB,CACjC,UAAwD,EACxD,IAAS;IAET,OAAO;QACL,IAAI,EAAE,IAAI;QACV,UAAU,EAAE,UAAU,CAAC,UAAU,IAAI,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI;QACrE,OAAO,EAAE,UAAU,CAAC,WAAW;KAChC,CAAC;AACJ,CAAC;AAED;;;;;GAKG;AACH,SAAS,iBAAiB,CAAC,QAAgB;IACzC,OAAO;QACL,KAAK,CAAC,kBAAkB,CAAC,MAA+B;YACtD,OAAO,qBAAqB,CAC1B,MAAM,IAAA,uBAAa,EAAW,QAAQ,EAAE,qBAAqB,EAAE,MAAM,CAAC,CACvE,CAAC;QACJ,CAAC;QACD,KAAK,CAAC,wBAAwB,CAAC,MAA+B;YAC5D,OAAO,qBAAqB,CAC1B,MAAM,IAAA,uBAAa,EAAW,QAAQ,EAAE,2BAA2B,EAAE,MAAM,CAAC,CAC7E,CAAC;QACJ,CAAC;KACF,CAAC;AACJ,CAAC;AAcD;;;;;;;;;GASG;AACI,KAAK,UAAU,WAAW,CAC/B,MAAc,EACd,IAAY,EACZ,OAAe;IAEf,MAAM,IAAI,GAAa,MAAM,IAAA,uBAAa,EAAW,MAAM,EAAE,YAAY,EAAE;QACzE,UAAU,EAAE,IAAI;QAChB,OAAO;QACP,KAAK,EAAE,CAAC;KACT,CAAC,CAAC;IACH,MAAM,SAAS,GACb,OAAO,IAAI,EAAE,QAAQ,KAAK,UAAU;QAClC,CAAC,CAAC,IAAA,mBAAS,EAAqB,IAA+B,CAAC;QAChE,CAAC,CAAC,EAAE,CAAC;IACT,MAAM,QAAQ,GAAmC,SAAS,CAAC,CAAC,CAAC,CAAC;IAC9D,IAAI,QAAQ,KAAK,SAAS;QAAE,OAAO,IAAI,CAAC;IACxC,MAAM,IAAI,GAAsB,IAAA,sB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package/dist/feeds/chrisFeed.js

@@ -306,11 +306,23 @@ async function feedShares_list(feedId) {
             errorStack_js_1.errorStack.stack_push("error", `Feed with ID ${feedId} not found.`);
             return (0, result_js_1.Err)();
         }
-        const permissions = await (0, adapter_js_1.resource_call)(feed, 'getUserPermissions', { limit: 100 });
-        const rows = (0, adapter_js_1.listData_get)(permissions);
-        return (0, result_js_1.Ok)(rows
-            .map((row) => String(row.username ?? ''))
-            .filter((name) => name !== ''));
+        // Every grant, not the first hundred: `getfacl` answers "who holds this
+        // feed", and a hundredth name is not a natural place for that answer to
+        // stop (#401).
+        const names = [];
+        const pageSize = 100;
+        for (let offset = 0;; offset += pageSize) {
+            const permissions = await (0, adapter_js_1.resource_call)(feed, 'getUserPermissions', { limit: pageSize, offset });
+            const rows = (0, adapter_js_1.listData_get)(permissions);
+            for (const row of rows) {
+                const name = String(row.username ?? '');
+                if (name !== '')
+                    names.push(name);
+            }
+            if (rows.length < pageSize)
+                break;
+        }
+        return (0, result_js_1.Ok)(names);
     }
     catch (error) {
         const message = error instanceof Error ? error.message : String(error);

package/dist/feeds/chrisFeed.js.map

@@ -1 +1 @@
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package/dist/filebrowser/chrisPipeline.js

@@ -44,7 +44,14 @@ async function pipelineFile_getByPath(filePath) {
     try {
         // Filter server-side by fname; fall back to client-side filter on the returned items
         // in case the backend does not support fname as a query param.
-        const pipelineSourceFileListResult = await client.getPipelineSourceFiles({ fname: expectedFname, limit: 1000 });
+        // listing-bound: a filter on the exact fname, so this asks for the one
+        // file at a path rather than for a collection; the window only has to be
+        // wider than a server that ignores the filter would answer with.
+        const pipelineSourceFileListResult = 
+        // listing-bound: filtered to one exact fname, so this asks for the file
+        // at a path rather than for a collection; the window only has to exceed
+        // what a server ignoring the filter would answer with.
+        await client.getPipelineSourceFiles({ fname: expectedFname, limit: 1000 });
         if (pipelineSourceFileListResult === null) {
             errorStack_js_1.errorStack.stack_push("error", `Failed to retrieve pipeline source file list.`);
             return (0, result_js_1.Err)();

package/dist/filebrowser/chrisPipeline.js.map

@@ -1 +1 @@
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+{"version":3,"file":"chrisPipeline.js","sourceRoot":"","sources":["../../src/filebrowser/chrisPipeline.ts"],"names":[],"mappings":";AAAA;;;;;;;GAOG;;AAoCH,wDAuEC;AAoBD,gEAQC;AArID,uDAMgC;AAChC,sEAAgE;AAChE,0DAAoD;AACpD,kDAAqD;AAOrD;;;;;;;;;;;;;;;;;GAiBG;AACI,KAAK,UAAU,sBAAsB,CAAC,QAAgB;IAC3D,MAAM,MAAM,GAAkB,MAAM,oCAAe,CAAC,UAAU,EAAE,CAAC;IACjE,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,qDAAqD,CAAC,CAAC;QACtF,OAAO,IAAA,eAAG,GAAE,CAAC;IACf,CAAC;IAED,yFAAyF;IACzF,oEAAoE;IACpE,MAAM,aAAa,GAAW,QAAQ,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC;IAE1F,IAAI,CAAC;QACH,qFAAqF;QACrF,+DAA+D;QAC/D,uEAAuE;QACvE,yEAAyE;QACzE,iEAAiE;QACjE,MAAM,4BAA4B;QAChC,wEAAwE;QACxE,wEAAwE;QACxE,uDAAuD;QACvD,MAAM,MAAM,CAAC,sBAAsB,CAAC,EAAE,KAAK,EAAE,aAAa,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC;QAE7E,IAAI,4BAA4B,KAAK,IAAI,EAAE,CAAC;YAC1C,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,+CAA+C,CAAC,CAAC;YAChF,OAAO,IAAA,eAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,QAAQ,GAAyB,IAAA,sBAAS,EAAqB,4BAA4B,CAAC,CAAC;QAEnG,mFAAmF;QACnF,MAAM,qBAAqB,GAAyB,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAwB,EAAE,EAAE;YAC7F,MAAM,QAAQ,GAAkC,IAAA,yBAAY,EAAyB,IAAI,CAAC,CAAC;YAC3F,OAAO,QAAQ,EAAE,KAAK,KAAK,aAAa,CAAC;QAC7C,CAAC,CAAC,CAAC;QAEH,IAAI,qBAAqB,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvC,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,mCAAmC,QAAQ,EAAE,CAAC,CAAC;YAC9E,OAAO,IAAA,eAAG,GAAE,CAAC;QACf,CAAC;QAED,MAAM,kBAAkB,GAAuB,qBAAqB,CAAC,CAAC,CAAE,CAAC;QACzE,MAAM,IAAI,GAAY,MAAM,kBAAkB,CAAC,WAAW,EAAE,CAAC;QAE7D,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,wBAAwB,QAAQ,uCAAuC,CAAC,CAAC;YACxG,OAAO,IAAA,eAAG,GAAE,CAAC;QACf,CAAC;QAED,uDAAuD;QACvD,IAAI,MAAc,CAAC;QACnB,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;YAC7B,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC7B,CAAC;aAAM,IAAI,IAAI,YAAY,WAAW,EAAE,CAAC;YACvC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC7B,CAAC;aAAM,IAAI,IAAI,YAAY,IAAI,EAAE,CAAC;YAChC,MAAM,WAAW,GAAgB,MAAM,IAAI,CAAC,WAAW,EAAE,CAAC;YAC1D,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;QACpC,CAAC;aAAM,IAAI,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC;YACjC,MAAM,GAAG,IAAI,CAAC;QAChB,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,2CAA2C,OAAO,IAAI,EAAE,CAAC,CAAC;QAC5E,CAAC;QAED,OAAO,IAAA,cAAE,EAAC,MAAM,CAAC,CAAC;IAEpB,CAAC;IAAC,OAAO,KAAc,EAAE,CAAC;QACxB,MAAM,GAAG,GAAW,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;QAC3E,0BAAU,CAAC,UAAU,CAAC,OAAO,EAAE,qCAAqC,QAAQ,KAAK,GAAG,EAAE,CAAC,CAAC;QACxF,OAAO,IAAA,eAAG,GAAE,CAAC;IACf,CAAC;AACH,CAAC;AAED;;;;;;;;;;;;;;;;;GAiBG;AACI,KAAK,UAAU,0BAA0B,CAAC,QAAgB;IAC/D,MAAM,MAAM,GAAmB,MAAM,sBAAsB,CAAC,QAAQ,CAAC,CAAC;IAEtE,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC;QACf,OAAO,IAAA,eAAG,GAAE,CAAC;IACf,CAAC;IAED,OAAO,IAAA,cAAE,EAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC;AAC5C,CAAC"}

package/dist/index.d.ts

@@ -18,6 +18,7 @@ export * from "./plugins/chrisPlugins";
 export * from "./plugins/chrisPluginMetaPlugins";
 export * from "./compute/computeResources";
 export * from "./pacs/chrisPACS";
+export * from "./pacs/queryIndexSweep";
 export * from "./pacs/dicomPayload";
 export * from "./resources/chrisResources";
 export * from "./resources/chrisResourceGroup";
@@ -45,8 +46,8 @@ export * from "./pluginmetas/chrisPluginMetas";
 export * from "./workflows/chrisWorkflows";
 export * from "./output/runtimeOutput";
 export { listData_get, itemData_get, items_get } from "./chrisapi/adapter";
-export { feedsPage_get, publicFeedsPage_get, pluginInstancesPage_get, pluginInstance_get, pipeline_get, pipelineSourceFilesPage_get, downloadToken_create, listPages_walk, listPages_drain, collectionPage_wrap, } from "./chrisapi/contract";
-export type { ListPage, PageWalkOptions, PageWalkStep, FeedData, PluginInstanceData, InstanceParameterData, DownloadToken, PluginInstanceHandle, PipelineHandle, PluginPipingItem, PluginPipingData, PipingDefaultParameterData, PipelineSourceFileData, PluginParameterData, ComputeResourceData, PluginHandle, } from "./chrisapi/contract";
+export { feedsPage_get, publicFeedsPage_get, pluginInstancesPage_get, pluginInstance_get, plugin_find, pluginParameters_drain, pipeline_get, pipelineSourceFilesPage_get, pipelineSourceFiles_drain, downloadToken_create, listPages_walk, listPages_drain, collectionPage_wrap, } from "./chrisapi/contract";
+export type { ListPage, PageWalkOptions, PageWalkStep, FeedData, PluginInstanceData, InstanceParameterData, DownloadToken, PluginInstanceHandle, PipelineHandle, PluginPipingItem, PluginPipingData, PipingDefaultParameterData, PipelineSourceFileData, PluginParameterData, ComputeResourceData, PluginHandle, PluginData, PluginFound, } from "./chrisapi/contract";
 export type { ListResource, Resource, ItemResource, PluginInstance, Feed, FileBrowserFolder, UserFile, PACSFile, } from "./chrisapi/adapter";
 /**
  * Shape of a single node (file, directory, or link) in a ChRIS path listing.

package/dist/index.js

@@ -24,7 +24,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.collectionPage_wrap = exports.listPages_drain = exports.listPages_walk = exports.downloadToken_create = exports.pipelineSourceFilesPage_get = exports.pipeline_get = exports.pluginInstance_get = exports.pluginInstancesPage_get = exports.publicFeedsPage_get = exports.feedsPage_get = exports.items_get = exports.itemData_get = exports.listData_get = void 0;
+exports.collectionPage_wrap = exports.listPages_drain = exports.listPages_walk = exports.downloadToken_create = exports.pipelineSourceFiles_drain = exports.pipelineSourceFilesPage_get = exports.pipeline_get = exports.pluginParameters_drain = exports.plugin_find = exports.pluginInstance_get = exports.pluginInstancesPage_get = exports.publicFeedsPage_get = exports.feedsPage_get = exports.items_get = exports.itemData_get = exports.listData_get = void 0;
 exports.chrisVersion_get = chrisVersion_get;
 __exportStar(require("./"), exports);
 __exportStar(require("./error/errorStack"), exports);
@@ -36,6 +36,7 @@ __exportStar(require("./plugins/chrisPlugins"), exports);
 __exportStar(require("./plugins/chrisPluginMetaPlugins"), exports);
 __exportStar(require("./compute/computeResources"), exports);
 __exportStar(require("./pacs/chrisPACS"), exports);
+__exportStar(require("./pacs/queryIndexSweep"), exports);
 __exportStar(require("./pacs/dicomPayload"), exports);
 __exportStar(require("./resources/chrisResources"), exports);
 __exportStar(require("./resources/chrisResourceGroup"), exports);
@@ -74,8 +75,11 @@ Object.defineProperty(exports, "feedsPage_get", { enumerable: true, get: functio
 Object.defineProperty(exports, "publicFeedsPage_get", { enumerable: true, get: function () { return contract_1.publicFeedsPage_get; } });
 Object.defineProperty(exports, "pluginInstancesPage_get", { enumerable: true, get: function () { return contract_1.pluginInstancesPage_get; } });
 Object.defineProperty(exports, "pluginInstance_get", { enumerable: true, get: function () { return contract_1.pluginInstance_get; } });
+Object.defineProperty(exports, "plugin_find", { enumerable: true, get: function () { return contract_1.plugin_find; } });
+Object.defineProperty(exports, "pluginParameters_drain", { enumerable: true, get: function () { return contract_1.pluginParameters_drain; } });
 Object.defineProperty(exports, "pipeline_get", { enumerable: true, get: function () { return contract_1.pipeline_get; } });
 Object.defineProperty(exports, "pipelineSourceFilesPage_get", { enumerable: true, get: function () { return contract_1.pipelineSourceFilesPage_get; } });
+Object.defineProperty(exports, "pipelineSourceFiles_drain", { enumerable: true, get: function () { return contract_1.pipelineSourceFiles_drain; } });
 Object.defineProperty(exports, "downloadToken_create", { enumerable: true, get: function () { return contract_1.downloadToken_create; } });
 Object.defineProperty(exports, "listPages_walk", { enumerable: true, get: function () { return contract_1.listPages_walk; } });
 Object.defineProperty(exports, "listPages_drain", { enumerable: true, get: function () { return contract_1.listPages_drain; } });

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;AAEA;;;;;;;;GAQG;;;;;;;;;;;;;;;;;AAsHH,4CAKC;AAzHD,qCAAmB;AACnB,qDAAmC;AACnC,kDAAgC;AAChC,oDAAkC;AAClC,4DAA0C;AAC1C,yDAAuC;AACvC,yDAAuC;AACvC,mEAAiD;AACjD,6DAA2C;AAC3C,mDAAiC;AACjC,yDAAuC;AACvC,sDAAoC;AACpC,6DAA2C;AAC3C,iEAA+C;AAC/C,8DAA4C;AAC5C,yEAAuD;AACvD,iEAA+C;AAC/C,2DAAyC;AACzC,0DAAwC;AACxC,8DAA4C;AAC5C,+CAA6B;AAC7B,0CAAwB;AACxB,+CAA6B;AAC7B,kDAAgC;AAChC,qDAAmC;AACnC,iDAA+B;AAC/B,gDAA8B;AAC9B,mDAAiC;AACjC,0CAAwB;AACxB,mDAAiC;AACjC,4DAA0C;AAC1C,qDAAmC;AACnC,mDAAiC;AACjC,uDAAqC;AACrC,iEAA+C;AAC/C,6DAA2C;AAC3C,yDAAuC;AAEvC,iFAAiF;AACjF,8CAA2E;AAAlE,uGAAA,YAAY,OAAA;AAAE,uGAAA,YAAY,OAAA;AAAE,oGAAA,SAAS,OAAA;AAE9C,yEAAyE;AACzE,0EAA0E;AAC1E,gDAc6B;AAb3B,yGAAA,aAAa,OAAA;AACb,+GAAA,mBAAmB,OAAA;AACnB,mHAAA,uBAAuB,OAAA;AACvB,8GAAA,kBAAkB,OAAA;AAClB,uGAAA,WAAW,OAAA;AACX,kHAAA,sBAAsB,OAAA;AACtB,wGAAA,YAAY,OAAA;AACZ,uHAAA,2BAA2B,OAAA;AAC3B,qHAAA,yBAAyB,OAAA;AACzB,gHAAA,oBAAoB,OAAA;AACpB,0GAAA,cAAc,OAAA;AACd,2GAAA,eAAe,OAAA;AACf,+GAAA,mBAAmB,OAAA;AAsDrB;;;;;GAKG;AACI,KAAK,UAAU,gBAAgB,CAAC,GAAW;IAChD,MAAM,OAAO,GAAW,OAAO,CAAC;IAChC,wCAAwC;IACxC,6CAA6C;IAC7C,OAAO,OAAO,CAAC;AACjB,CAAC;AAED;;GAEG;AACH,KAAK,UAAU,IAAI;IACjB,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;AAC5B,CAAC;AAED,gEAAgE;AAChE,qCAAqC;AACrC,IAAI,OAAO,CAAC,IAAI,KAAK,MAAM,EAAE,CAAC;IAC5B,IAAI,EAAE,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,EAAE;QACrB,OAAO,CAAC,KAAK,CAAC,oBAAoB,EAAE,KAAK,CAAC,CAAC;QAC3C,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC,CAAC,CAAC;AACL,CAAC"}

package/dist/io/chrisIO.d.ts

@@ -88,6 +88,32 @@ export declare class ChrisIO {
      * @returns A Promise resolving to true on success, false on failure.
      */
     file_upload(fileBlob: Blob, uploadDir: string, filename: string): Promise<boolean>;
+    /**
+     * Deletes one file by its id, without listing anything.
+     *
+     * A file that cannot be LISTED must still be deletable: a folder whose
+     * listing the server refuses is exactly the folder an operator most needs
+     * to clear, and a delete that resolves its id through the parent's
+     * collection cannot help there (#462).
+     *
+     * @param fileId - The file's id.
+     * @returns Ok(true) when the file is gone, Err when the server refused.
+     */
+    file_deleteById(fileId: number): Promise<Result<boolean>>;
+    /**
+     * Whether a path is free to be written to.
+     *
+     * Asked by exact name rather than by listing the folder: one request, and
+     * it still answers when the folder's own listing is broken. Anything the
+     * server will not answer counts as occupied.
+     *
+     * @param client - The connected client.
+     * @param wanted - The path a write wants, without a leading slash.
+     * @param mine - The path the just-uploaded file currently occupies, which
+     *   is not a collision with itself.
+     * @returns True when nothing else holds the path.
+     */
+    private path_isFree;
     /**
      * Creates a new folder in ChRIS at the specified path.
      *