@fnndsc/cumin 3.10.0 → 3.12.0

package/dist/chrisapi/contract.d.ts

@@ -36,6 +36,56 @@ export interface ListPage<T> {
     data: T[];
     totalCount: number | null;
 }
+/**
+ * Options controlling one paginated walk over a CUBE list.
+ *
+ * @property pageSize - Rows requested per page. Defaults to 100.
+ * @property startOffset - Offset at which the walk begins. Defaults to 0; a
+ *   resumed walk passes the offset its previous attempt had reached.
+ * @property startTotal - Server total already latched by a previous attempt,
+ *   or null when unknown. Defaults to null.
+ */
+export interface PageWalkOptions {
+    pageSize?: number;
+    startOffset?: number;
+    startTotal?: number | null;
+}
+/**
+ * One yielded step of a paginated walk.
+ *
+ * @property items - The rows of this page, in server order. May be empty on
+ *   the final step.
+ * @property offset - Offset at which this page was fetched.
+ * @property total - The latched server total, or null while the server has
+ *   not reported one. A null total means "unknown", not zero.
+ */
+export interface PageWalkStep<T> {
+    items: T[];
+    offset: number;
+    total: number | null;
+}
+/**
+ * Walks every page of a paginated CUBE list, yielding one step per page.
+ *
+ * This is the one pagination loop: it owns offset advancement, total
+ * latching, and termination, so callers only consume rows. The walk ends
+ * when a page comes back empty, when the latched total has been reached, or
+ * when a short page arrives while the total is still unknown. Fetch errors
+ * propagate to the caller; a resumed walk continues from `startOffset`.
+ *
+ * @param page_fetch - Fetches one page at the given offset and limit.
+ * @param options - Page size and resume position. See PageWalkOptions.
+ * @returns Async generator yielding a PageWalkStep per fetched page.
+ *
+ * @example
+ * ```
+ * for await (const step of listPages_walk((offset, limit) =>
+ *   feedsPage_get(client, { limit, offset }))) {
+ *   for (const feed of step.items) index.set(feed.id, feed);
+ * }
+ * ```
+ */
+export declare function listPages_walk<T>(page_fetch: (offset: number, limit: number) => Promise<ListPage<T>>, options?: PageWalkOptions): AsyncGenerator<PageWalkStep<T>, void, void>;
 /**
  * Wire shape of one CUBE feed row, as served by the feeds list endpoints.
  *

package/dist/chrisapi/contract.js

@@ -25,6 +25,7 @@
  * @module
  */
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.listPages_walk = listPages_walk;
 exports.feedsPage_get = feedsPage_get;
 exports.publicFeedsPage_get = publicFeedsPage_get;
 exports.pluginInstancesPage_get = pluginInstancesPage_get;
@@ -33,6 +34,47 @@ exports.pipeline_get = pipeline_get;
 exports.pipelineSourceFilesPage_get = pipelineSourceFilesPage_get;
 exports.downloadToken_create = downloadToken_create;
 const adapter_1 = require("./adapter");
+/**
+ * Walks every page of a paginated CUBE list, yielding one step per page.
+ *
+ * This is the one pagination loop: it owns offset advancement, total
+ * latching, and termination, so callers only consume rows. The walk ends
+ * when a page comes back empty, when the latched total has been reached, or
+ * when a short page arrives while the total is still unknown. Fetch errors
+ * propagate to the caller; a resumed walk continues from `startOffset`.
+ *
+ * @param page_fetch - Fetches one page at the given offset and limit.
+ * @param options - Page size and resume position. See PageWalkOptions.
+ * @returns Async generator yielding a PageWalkStep per fetched page.
+ *
+ * @example
+ * ```
+ * for await (const step of listPages_walk((offset, limit) =>
+ *   feedsPage_get(client, { limit, offset }))) {
+ *   for (const feed of step.items) index.set(feed.id, feed);
+ * }
+ * ```
+ */
+async function* listPages_walk(page_fetch, options = {}) {
+    const pageSize = options.pageSize ?? 100;
+    let offset = options.startOffset ?? 0;
+    let total = options.startTotal ?? null;
+    while (true) {
+        const page = await page_fetch(offset, pageSize);
+        const items = page.data;
+        if (total === null && page.totalCount !== null) {
+            total = page.totalCount;
+        }
+        yield { items, offset, total };
+        if (items.length === 0)
+            return;
+        if (total !== null && offset + items.length >= total)
+            return;
+        if (total === null && items.length < pageSize)
+            return;
+        offset += items.length;
+    }
+}
 /**
  * Normalizes a raw chrisapi list response into a typed ListPage.
  *

package/dist/chrisapi/contract.js.map

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package/dist/context/chrisContext.js

@@ -281,6 +281,13 @@ class ChrisContext {
      * @returns True on success, false on failure.
      */
     async current_set(context, value) {
+        // Resolve the session-scoped filenames BEFORE writing: a fresh process's
+        // first context write otherwise lands at the unresolved location while
+        // every later read uses the resolved one (first-command `cd` lost its
+        // value this way). The same init runs again after the write because
+        // saving the user or URL changes which directory the filenames live in.
+        await config_js_1.sessionConfig.connection.init();
+        await config_js_1.sessionConfig.init();
         let status = false;
         switch (context) {
             case Context.ChRISuser:

package/dist/context/chrisContext.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -18,6 +18,7 @@ export * from "./plugins/chrisPlugins";
 export * from "./plugins/chrisPluginMetaPlugins";
 export * from "./compute/computeResources";
 export * from "./pacs/chrisPACS";
+export * from "./pacs/dicomPayload";
 export * from "./resources/chrisResources";
 export * from "./resources/chrisResourceGroup";
 export * from "./resources/chrisObjContext";
@@ -44,8 +45,8 @@ export * from "./pluginmetas/chrisPluginMetas";
 export * from "./workflows/chrisWorkflows";
 export * from "./output/runtimeOutput";
 export { listData_get, itemData_get, items_get } from "./chrisapi/adapter";
-export { feedsPage_get, publicFeedsPage_get, pluginInstancesPage_get, pluginInstance_get, pipeline_get, pipelineSourceFilesPage_get, downloadToken_create, } from "./chrisapi/contract";
-export type { ListPage, FeedData, PluginInstanceData, InstanceParameterData, DownloadToken, PluginInstanceHandle, PipelineHandle, PluginPipingItem, PluginPipingData, PipingDefaultParameterData, PipelineSourceFileData, PluginParameterData, ComputeResourceData, PluginHandle, } from "./chrisapi/contract";
+export { feedsPage_get, publicFeedsPage_get, pluginInstancesPage_get, pluginInstance_get, pipeline_get, pipelineSourceFilesPage_get, downloadToken_create, listPages_walk, } from "./chrisapi/contract";
+export type { ListPage, PageWalkOptions, PageWalkStep, FeedData, PluginInstanceData, InstanceParameterData, DownloadToken, PluginInstanceHandle, PipelineHandle, PluginPipingItem, PluginPipingData, PipingDefaultParameterData, PipelineSourceFileData, PluginParameterData, ComputeResourceData, PluginHandle, } from "./chrisapi/contract";
 export type { ListResource, Resource, ItemResource, PluginInstance, Feed, FileBrowserFolder, UserFile, PACSFile, } from "./chrisapi/adapter";
 /**
  * Shape of a single node (file, directory, or link) in a ChRIS path listing.

package/dist/index.js

@@ -24,7 +24,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.downloadToken_create = exports.pipelineSourceFilesPage_get = exports.pipeline_get = exports.pluginInstance_get = exports.pluginInstancesPage_get = exports.publicFeedsPage_get = exports.feedsPage_get = exports.items_get = exports.itemData_get = exports.listData_get = void 0;
+exports.listPages_walk = exports.downloadToken_create = exports.pipelineSourceFilesPage_get = exports.pipeline_get = exports.pluginInstance_get = exports.pluginInstancesPage_get = exports.publicFeedsPage_get = exports.feedsPage_get = exports.items_get = exports.itemData_get = exports.listData_get = void 0;
 exports.chrisVersion_get = chrisVersion_get;
 __exportStar(require("./"), exports);
 __exportStar(require("./error/errorStack"), exports);
@@ -36,6 +36,7 @@ __exportStar(require("./plugins/chrisPlugins"), exports);
 __exportStar(require("./plugins/chrisPluginMetaPlugins"), exports);
 __exportStar(require("./compute/computeResources"), exports);
 __exportStar(require("./pacs/chrisPACS"), exports);
+__exportStar(require("./pacs/dicomPayload"), exports);
 __exportStar(require("./resources/chrisResources"), exports);
 __exportStar(require("./resources/chrisResourceGroup"), exports);
 __exportStar(require("./resources/chrisObjContext"), exports);
@@ -76,6 +77,7 @@ Object.defineProperty(exports, "pluginInstance_get", { enumerable: true, get: fu
 Object.defineProperty(exports, "pipeline_get", { enumerable: true, get: function () { return contract_1.pipeline_get; } });
 Object.defineProperty(exports, "pipelineSourceFilesPage_get", { enumerable: true, get: function () { return contract_1.pipelineSourceFilesPage_get; } });
 Object.defineProperty(exports, "downloadToken_create", { enumerable: true, get: function () { return contract_1.downloadToken_create; } });
+Object.defineProperty(exports, "listPages_walk", { enumerable: true, get: function () { return contract_1.listPages_walk; } });
 /**
  * Gets the ChRIS version from the given URL.
  *

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;AAEA;;;;;;;;GAQG;;;;;;;;;;;;;;;;;AA8GH,4CAKC;AAjHD,qCAAmB;AACnB,qDAAmC;AACnC,kDAAgC;AAChC,oDAAkC;AAClC,4DAA0C;AAC1C,yDAAuC;AACvC,yDAAuC;AACvC,mEAAiD;AACjD,6DAA2C;AAC3C,mDAAiC;AACjC,sDAAoC;AACpC,6DAA2C;AAC3C,iEAA+C;AAC/C,8DAA4C;AAC5C,yEAAuD;AACvD,iEAA+C;AAC/C,2DAAyC;AACzC,0DAAwC;AACxC,8DAA4C;AAC5C,+CAA6B;AAC7B,0CAAwB;AACxB,+CAA6B;AAC7B,kDAAgC;AAChC,qDAAmC;AACnC,iDAA+B;AAC/B,gDAA8B;AAC9B,mDAAiC;AACjC,0CAAwB;AACxB,mDAAiC;AACjC,4DAA0C;AAC1C,qDAAmC;AACnC,mDAAiC;AACjC,uDAAqC;AACrC,iEAA+C;AAC/C,6DAA2C;AAC3C,yDAAuC;AAEvC,iFAAiF;AACjF,8CAA2E;AAAlE,uGAAA,YAAY,OAAA;AAAE,uGAAA,YAAY,OAAA;AAAE,oGAAA,SAAS,OAAA;AAE9C,yEAAyE;AACzE,0EAA0E;AAC1E,gDAS6B;AAR3B,yGAAA,aAAa,OAAA;AACb,+GAAA,mBAAmB,OAAA;AACnB,mHAAA,uBAAuB,OAAA;AACvB,8GAAA,kBAAkB,OAAA;AAClB,wGAAA,YAAY,OAAA;AACZ,uHAAA,2BAA2B,OAAA;AAC3B,gHAAA,oBAAoB,OAAA;AACpB,0GAAA,cAAc,OAAA;AAoDhB;;;;;GAKG;AACI,KAAK,UAAU,gBAAgB,CAAC,GAAW;IAChD,MAAM,OAAO,GAAW,OAAO,CAAC;IAChC,wCAAwC;IACxC,6CAA6C;IAC7C,OAAO,OAAO,CAAC;AACjB,CAAC;AAED;;GAEG;AACH,KAAK,UAAU,IAAI;IACjB,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;AAC5B,CAAC;AAED,gEAAgE;AAChE,qCAAqC;AACrC,IAAI,OAAO,CAAC,IAAI,KAAK,MAAM,EAAE,CAAC;IAC5B,IAAI,EAAE,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,EAAE;QACrB,OAAO,CAAC,KAAK,CAAC,oBAAoB,EAAE,KAAK,CAAC,CAAC;QAC3C,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC,CAAC,CAAC;AACL,CAAC"}

package/dist/io/chrisIO.d.ts

@@ -97,6 +97,21 @@ export declare class ChrisIO {
      * @returns Promise resolving to true on success, false on failure.
      */
     folder_moveByPath(srcPath: string, destPath: string): Promise<Result<boolean>>;
+    /**
+     * Deletes a folder (and its contents) addressed by path, waiting until the
+     * CUBE confirms it is gone.
+     *
+     * Deletion is asynchronous server-side (the DELETE is only accepted), so
+     * success is defined as the path no longer resolving within the timeout.
+     *
+     * @param path - The folder's CUBE path (leading slash optional).
+     * @param options - `timeoutMs` bounds the disappearance poll (default 10s).
+     * @returns Ok(true) when the folder is verifiably gone (or never existed),
+     *   Err on failure or timeout.
+     */
+    folder_deleteByPath(path: string, options?: {
+        timeoutMs?: number;
+    }): Promise<Result<boolean>>;
     /**
      * Moves (renames) a file in ChRIS by updating its path.
      * @param fileId - The file ID.

package/dist/io/chrisIO.js

@@ -324,6 +324,47 @@ class ChrisIO {
             return (0, result_js_1.Err)();
         }
     }
+    /**
+     * Deletes a folder (and its contents) addressed by path, waiting until the
+     * CUBE confirms it is gone.
+     *
+     * Deletion is asynchronous server-side (the DELETE is only accepted), so
+     * success is defined as the path no longer resolving within the timeout.
+     *
+     * @param path - The folder's CUBE path (leading slash optional).
+     * @param options - `timeoutMs` bounds the disappearance poll (default 10s).
+     * @returns Ok(true) when the folder is verifiably gone (or never existed),
+     *   Err on failure or timeout.
+     */
+    async folder_deleteByPath(path, options = {}) {
+        const client = await this.client_get();
+        if (!client) {
+            errorStack_js_1.errorStack.stack_push("error", "ChRIS client is not initialized");
+            return (0, result_js_1.Err)();
+        }
+        const cleanPath = path.startsWith('/') ? path.slice(1) : path;
+        try {
+            const folder = await client.getFileBrowserFolderByPath(cleanPath);
+            if (!folder) {
+                return (0, result_js_1.Ok)(true);
+            }
+            await (0, adapter_js_1.resource_call)(folder, 'delete');
+            const deadline = Date.now() + (options.timeoutMs ?? 10000);
+            while (Date.now() < deadline) {
+                if (!(await client.getFileBrowserFolderByPath(cleanPath))) {
+                    return (0, result_js_1.Ok)(true);
+                }
+                await new Promise((resolve) => setTimeout(resolve, 500));
+            }
+            errorStack_js_1.errorStack.stack_push("error", `Folder ${cleanPath} still resolves after queued deletion`);
+            return (0, result_js_1.Err)();
+        }
+        catch (error) {
+            const errorMsg = error instanceof Error ? error.message : String(error);
+            errorStack_js_1.errorStack.stack_push("error", `Failed to delete folder ${cleanPath}: ${errorMsg}`);
+            return (0, result_js_1.Err)();
+        }
+    }
     /**
      * Moves (renames) a file in ChRIS by updating its path.
      * @param fileId - The file ID.
@@ -342,8 +383,15 @@ class ChrisIO {
                 errorStack_js_1.errorStack.stack_push("error", `File not found with ID ${fileId}`);
                 return (0, result_js_1.Err)();
             }
-            // chrisapi typings omit the path field, but API supports it for renames
-            await (0, adapter_js_1.resource_call)(userFile, 'put', { path: destPath });
+            // The rename field drifted across CUBE versions: newer servers take
+            // `upload_path`, older ones `path` (chrisapi types neither). Try the
+            // current name first and fall back for older CUBEs.
+            try {
+                await (0, adapter_js_1.resource_call)(userFile, 'put', { upload_path: destPath });
+            }
+            catch {
+                await (0, adapter_js_1.resource_call)(userFile, 'put', { path: destPath });
+            }
             return (0, result_js_1.Ok)(true);
         }
         catch (error) {

package/dist/io/chrisIO.js.map

@@ -1 +1 @@
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package/dist/pacs/chrisPACS.js

@@ -28,6 +28,7 @@ const retry_js_1 = require("../utils/retry.js");
 const chrisResourceGroup_js_1 = require("../resources/chrisResourceGroup.js");
 const adapter_js_1 = require("../chrisapi/adapter.js");
 const chrisConnection_js_1 = require("../connect/chrisConnection.js");
+const dicomPayload_js_1 = require("./dicomPayload.js");
 const zlib_1 = __importDefault(require("zlib"));
 /**
  * Group handler for PACS servers.
@@ -436,19 +437,6 @@ async function seriesStorage_resolve(seriesInstanceUID, retry) {
         return (0, result_js_1.Ok)(empty); // Return the empty state rather than failing the whole operation
     }
 }
-/**
- * Extract value from a DICOM tag object or return as-is.
- *
- * @param val - Potentially a tag object with {label, value} or a primitive.
- * @returns The extracted value.
- */
-function tag_extractValue(val) {
-    if (val && typeof val === "object" && "value" in val) {
-        const tagObj = val;
-        return tagObj.value;
-    }
-    return val;
-}
 /**
  * Determine series status based on file counts.
  *
@@ -478,29 +466,26 @@ async function retrieve_latestFromQuery(queryId) {
 async function studySeries_buildStatus(study) {
     const studyStatus = {
         studyInfo: study,
-        studyInstanceUID: tag_extractValue(study.StudyInstanceUID),
-        studyDescription: tag_extractValue(study.StudyDescription),
+        studyInstanceUID: (0, dicomPayload_js_1.tag_extractRaw)(study.StudyInstanceUID),
+        studyDescription: (0, dicomPayload_js_1.tag_extractRaw)(study.StudyDescription),
         series: [],
     };
-    const seriesArray = Array.isArray(study.series) ? study.series :
-        Array.isArray(study.Series) ? study.Series :
-            Array.isArray(study.results) ? study.results :
-                [];
+    const seriesArray = (0, dicomPayload_js_1.series_extractFromStudy)(study);
     for (const seriesObj of seriesArray) {
         if (!seriesObj || typeof seriesObj !== "object")
             continue;
         const series = seriesObj;
-        const seriesUID = tag_extractValue(series.SeriesInstanceUID);
+        const seriesUID = (0, dicomPayload_js_1.tag_extractRaw)(series.SeriesInstanceUID);
         if (!seriesUID)
             continue;
-        const expectedFiles = Number(tag_extractValue(series.NumberOfSeriesRelatedInstances)) || 0;
+        const expectedFiles = Number((0, dicomPayload_js_1.tag_extractRaw)(series.NumberOfSeriesRelatedInstances)) || 0;
         const storageResult = await seriesStorage_resolve(seriesUID);
         const storage = storageResult.ok ? storageResult.value : { fileCount: 0, folderPath: null };
         const status = series_determineStatus(expectedFiles, storage.fileCount);
         studyStatus.series.push({
             seriesInfo: series,
             seriesInstanceUID: seriesUID,
-            seriesDescription: tag_extractValue(series.SeriesDescription),
+            seriesDescription: (0, dicomPayload_js_1.tag_extractRaw)(series.SeriesDescription),
             expectedFiles,
             actualFiles: storage.fileCount,
             status,
@@ -526,7 +511,7 @@ async function pacsRetrieve_statusForQuery(queryId) {
             return (0, result_js_1.Err)();
         }
         const { retrieveStatus, retrieveId } = await retrieve_latestFromQuery(queryId);
-        const payloadArray = Array.isArray(decoded.json) ? decoded.json : [decoded.json];
+        const payloadArray = (0, dicomPayload_js_1.studies_extractFromDecoded)(decoded.json);
         const studies = [];
         for (const obj of payloadArray) {
             if (!obj || typeof obj !== "object")

package/dist/pacs/chrisPACS.js.map

@@ -1 +1 @@
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package/dist/pacs/dicomPayload.d.ts

@@ -0,0 +1,75 @@
+/**
+ * @file DICOM query-payload interpretation helpers.
+ *
+ * A decoded PACS query result arrives as loosely shaped JSON: studies under
+ * one of several container keys, series likewise, and individual tag values
+ * either bare or wrapped (`{value: ...}` from CUBE's decoder, `{Value: [...]}`
+ * from DICOM-JSON). Four packages grew private copies of this interpretation,
+ * each accepting a different subset of the shapes. This module is the one
+ * home: every helper accepts the union of the shapes the copies handled.
+ *
+ * Key components:
+ *   - tag_extractRaw / tag_extractValue: unwrap one tag value
+ *   - studies_extractFromDecoded: locate the study array in a decoded payload
+ *   - series_extractFromStudy: locate the series array in a study object
+ *   - study_findByUID / series_findByUID: UID lookups over those arrays
+ *
+ * Dependencies: none — pure functions over unknown-shaped JSON.
+ *
+ * @module
+ */
+/**
+ * Unwraps a potentially wrapped DICOM tag value, preserving its raw type.
+ *
+ * Accepts CUBE's `{value: ...}` decoder wrapper, the DICOM-JSON
+ * `{Value: [...]}` wrapper (first element wins), or a bare value.
+ *
+ * @param val - Potentially wrapped tag value.
+ * @returns The unwrapped value; undefined and null pass through unchanged.
+ */
+export declare function tag_extractRaw(val: unknown): unknown;
+/**
+ * Extracts a DICOM tag value as a string.
+ *
+ * @param val - Potentially wrapped tag value.
+ * @returns The unwrapped value as a string; empty string for null/undefined.
+ */
+export declare function tag_extractValue(val: unknown): string;
+/**
+ * Locates the study array inside a decoded PACS query payload.
+ *
+ * Probes the container keys the wire has been seen to use (`studies`,
+ * `Studies`, `results`), falling back to treating the payload itself as the
+ * study collection. A non-array collection is wrapped as a single study.
+ *
+ * @param decodedJson - The decoded query result payload.
+ * @returns The study objects, in payload order. Never null; a payload with
+ *   no recognizable studies yields a single-element wrap of the payload.
+ */
+export declare function studies_extractFromDecoded(decodedJson: unknown): Record<string, unknown>[];
+/**
+ * Locates the series array inside one study object.
+ *
+ * Probes `series`, `Series`, `results`, and `data`; a study carrying none of
+ * them has no series.
+ *
+ * @param studyObj - One study object from a decoded payload.
+ * @returns The series objects, or an empty array.
+ */
+export declare function series_extractFromStudy(studyObj: Record<string, unknown>): Record<string, unknown>[];
+/**
+ * Finds a study by its StudyInstanceUID.
+ *
+ * @param studies - Study objects from studies_extractFromDecoded.
+ * @param uid - The StudyInstanceUID to match.
+ * @returns The matching study, or undefined.
+ */
+export declare function study_findByUID(studies: Record<string, unknown>[], uid: string): Record<string, unknown> | undefined;
+/**
+ * Finds a series by its SeriesInstanceUID.
+ *
+ * @param seriesArr - Series objects from series_extractFromStudy.
+ * @param uid - The SeriesInstanceUID to match.
+ * @returns The matching series, or undefined.
+ */
+export declare function series_findByUID(seriesArr: Record<string, unknown>[], uid: string): Record<string, unknown> | undefined;

package/dist/pacs/dicomPayload.js

@@ -0,0 +1,130 @@
+"use strict";
+/**
+ * @file DICOM query-payload interpretation helpers.
+ *
+ * A decoded PACS query result arrives as loosely shaped JSON: studies under
+ * one of several container keys, series likewise, and individual tag values
+ * either bare or wrapped (`{value: ...}` from CUBE's decoder, `{Value: [...]}`
+ * from DICOM-JSON). Four packages grew private copies of this interpretation,
+ * each accepting a different subset of the shapes. This module is the one
+ * home: every helper accepts the union of the shapes the copies handled.
+ *
+ * Key components:
+ *   - tag_extractRaw / tag_extractValue: unwrap one tag value
+ *   - studies_extractFromDecoded: locate the study array in a decoded payload
+ *   - series_extractFromStudy: locate the series array in a study object
+ *   - study_findByUID / series_findByUID: UID lookups over those arrays
+ *
+ * Dependencies: none — pure functions over unknown-shaped JSON.
+ *
+ * @module
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.tag_extractRaw = tag_extractRaw;
+exports.tag_extractValue = tag_extractValue;
+exports.studies_extractFromDecoded = studies_extractFromDecoded;
+exports.series_extractFromStudy = series_extractFromStudy;
+exports.study_findByUID = study_findByUID;
+exports.series_findByUID = series_findByUID;
+/**
+ * Unwraps a potentially wrapped DICOM tag value, preserving its raw type.
+ *
+ * Accepts CUBE's `{value: ...}` decoder wrapper, the DICOM-JSON
+ * `{Value: [...]}` wrapper (first element wins), or a bare value.
+ *
+ * @param val - Potentially wrapped tag value.
+ * @returns The unwrapped value; undefined and null pass through unchanged.
+ */
+function tag_extractRaw(val) {
+    if (val && typeof val === "object") {
+        const record = val;
+        if ("value" in record)
+            return record.value;
+        if (Array.isArray(record.Value) && record.Value.length > 0)
+            return record.Value[0];
+    }
+    return val;
+}
+/**
+ * Extracts a DICOM tag value as a string.
+ *
+ * @param val - Potentially wrapped tag value.
+ * @returns The unwrapped value as a string; empty string for null/undefined.
+ */
+function tag_extractValue(val) {
+    return String(tag_extractRaw(val) ?? "");
+}
+/**
+ * Locates the study array inside a decoded PACS query payload.
+ *
+ * Probes the container keys the wire has been seen to use (`studies`,
+ * `Studies`, `results`), falling back to treating the payload itself as the
+ * study collection. A non-array collection is wrapped as a single study.
+ *
+ * @param decodedJson - The decoded query result payload.
+ * @returns The study objects, in payload order. Never null; a payload with
+ *   no recognizable studies yields a single-element wrap of the payload.
+ */
+function studies_extractFromDecoded(decodedJson) {
+    let studiesObj;
+    if (decodedJson && typeof decodedJson === "object" && !Array.isArray(decodedJson)) {
+        const record = decodedJson;
+        if ("studies" in record)
+            studiesObj = record.studies;
+        else if ("Studies" in record)
+            studiesObj = record.Studies;
+        else if ("results" in record)
+            studiesObj = record.results;
+        else
+            studiesObj = decodedJson;
+    }
+    else {
+        studiesObj = decodedJson;
+    }
+    const arr = Array.isArray(studiesObj) ? studiesObj : [studiesObj];
+    return arr;
+}
+/**
+ * Locates the series array inside one study object.
+ *
+ * Probes `series`, `Series`, `results`, and `data`; a study carrying none of
+ * them has no series.
+ *
+ * @param studyObj - One study object from a decoded payload.
+ * @returns The series objects, or an empty array.
+ */
+function series_extractFromStudy(studyObj) {
+    const arr = Array.isArray(studyObj.series) ? studyObj.series :
+        Array.isArray(studyObj.Series) ? studyObj.Series :
+            Array.isArray(studyObj.results) ? studyObj.results :
+                Array.isArray(studyObj.data) ? studyObj.data :
+                    [];
+    return arr;
+}
+/**
+ * Finds a study by its StudyInstanceUID.
+ *
+ * @param studies - Study objects from studies_extractFromDecoded.
+ * @param uid - The StudyInstanceUID to match.
+ * @returns The matching study, or undefined.
+ */
+function study_findByUID(studies, uid) {
+    return studies.find((s) => {
+        const sUID = tag_extractValue(s.StudyInstanceUID || s.uid);
+        return sUID === uid;
+    });
+}
+/**
+ * Finds a series by its SeriesInstanceUID.
+ *
+ * @param seriesArr - Series objects from series_extractFromStudy.
+ * @param uid - The SeriesInstanceUID to match.
+ * @returns The matching series, or undefined.
+ */
+function series_findByUID(seriesArr, uid) {
+    return seriesArr.find((s) => {
+        const sUID = tag_extractValue(s.SeriesInstanceUID || s.uid);
+        return sUID === uid;
+    });
+}
+//# sourceMappingURL=dicomPayload.js.map

package/dist/pacs/dicomPayload.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fnndsc/cumin",
-  "version": "3.10.0",
+  "version": "3.12.0",
   "description": "Utility library for ChILI and other ChRIS-related JavaScript applications",
   "repository": {
     "type": "git",
@@ -23,6 +23,11 @@
       "types": "./dist/index.d.ts",
       "require": "./dist/index.js"
     },
+    "./dicom-payload": {
+      "import": "./dist/pacs/dicomPayload.js",
+      "types": "./dist/pacs/dicomPayload.d.ts",
+      "require": "./dist/pacs/dicomPayload.js"
+    },
     "./proc-prompt": {
       "import": "./dist/cache/procPrompt.js",
       "types": "./dist/cache/procPrompt.d.ts",