@fnndsc/brasa 0.9.1 → 0.10.0

package/dist/builtins/proc.js

@@ -3,13 +3,68 @@
  * Manages the /proc VFS cache (job monitoring).
  */
 import chalk from 'chalk';
-import { procCache_refresh, procFeed_ensureLoaded, jobs_find } from '@fnndsc/salsa';
-import { procCache_get, envelope_ok, envelope_error } from '@fnndsc/cumin';
+import { context_getSingle, procCache_refresh, procFeed_ensureLoaded, procTopology_await, procTopology_retry, procTopology_status, procTopology_warmup, jobs_find } from '@fnndsc/salsa';
+import { path_extractFeedID, path_extractPluginInstanceID, path_isInFeed, procCache_get, envelope_ok, envelope_error } from '@fnndsc/cumin';
 import { spinner } from '../lib/spinner.js';
 import { commandArgs_process } from './utils.js';
+import { builtin_cd } from './fs/cd.js';
+import { session } from '../session/index.js';
 import { list_applySort } from '@fnndsc/chili/utils/sort.js';
 import { screen, table_render } from '@fnndsc/chili/screen/screen.js';
 import { ALL_JOB_FIELDS, feedStatus_derive, statusColor, jobFields_select, procEntries_filterBySearch, procCsv_render, feedId_parse, } from './proc.helpers.js';
+/**
+ * Refuses a global cache query while topology warm-up is incomplete.
+ *
+ * @param command - Command the user can repeat with `--force`.
+ * @param force - Whether to await the active warm-up instead of refusing.
+ * @returns An error envelope when blocked, otherwise null.
+ */
+async function procWarmup_guard(command, force) {
+    const cache = procCache_get();
+    const progress = cache.warmupProgress_get();
+    const topology = procTopology_status();
+    if (cache.lifecycle_get().checkpointAt && !force)
+        return null;
+    if (!progress.active && topology.state !== 'running' && topology.state !== 'failed')
+        return null;
+    if (topology.state === 'failed') {
+        process.exitCode = 1;
+        const reason = topology.failure ? `: ${topology.failure}` : '';
+        return envelope_error('', undefined, `${chalk.red(`proc: the visible-job index failed to warm${reason}.`)}\n` +
+            'Global queries are disabled to avoid incomplete results. Run `proc retry` to continue from the failed page.\n');
+    }
+    if (force) {
+        spinner.start('Waiting for the complete /proc job index...');
+        try {
+            await procTopology_await();
+            const cache = procCache_get();
+            const settled = procTopology_status();
+            if (settled.state !== 'complete' || cache.warmupProgress_get().active || !cache.warmupComplete) {
+                throw new Error('the topology sweep did not complete');
+            }
+            spinner.stop();
+            return null;
+        }
+        catch (error) {
+            spinner.stop();
+            const message = error instanceof Error ? error.message : String(error);
+            process.exitCode = 1;
+            return envelope_error('', undefined, `${chalk.red(`proc warm-up failed: ${message}`)}\n`);
+        }
+    }
+    const percent = progress.total > 0
+        ? Math.min(99, Math.floor((progress.loaded / progress.total) * 100))
+        : 0;
+    const count = progress.total > 0
+        ? `${progress.loaded}/${progress.total}, ${percent}%`
+        : 'initializing';
+    process.exitCode = 1;
+    return envelope_error('', undefined, `${chalk.yellow(`proc: the visible-job index is still warming (${count}).`)}\n` +
+        'This query could return incomplete results.\n\n' +
+        'Wait for warm-up to finish, or run:\n' +
+        `  ${command} --force\n\n` +
+        '--force waits for the complete index and may take some time.\n');
+}
 // ── proc jobs ─────────────────────────────────────────────────────────────────
 /**
  * Builds flat job entries from the proc cache.
@@ -95,6 +150,9 @@ async function jobs_subcmd(args) {
     }
     const listArgs = second === 'list' ? args.slice(1) : args;
     const parsed = commandArgs_process(listArgs);
+    const blocked = await procWarmup_guard('proc jobs list', !!parsed['force']);
+    if (blocked)
+        return blocked;
     let entries = procEntries_fromCache(procCache_get());
     entries = procEntries_filterBySearch(entries, String(parsed['search'] ?? ''));
     if (entries.length === 0) {
@@ -141,6 +199,9 @@ async function procRefresh_handle(args) {
     spinner.start(`Refreshing /proc cache (${scope})...`);
     try {
         await procCache_refresh(feedID);
+        if (feedID === undefined) {
+            void procTopology_warmup().catch(() => { });
+        }
         spinner.stop();
         return envelope_ok(`${chalk.green(`/proc cache refreshed (${scope})`)}\n`);
     }
@@ -151,6 +212,30 @@ async function procRefresh_handle(args) {
         return envelope_error('', undefined, `${chalk.red(`proc refresh failed: ${msg}`)}\n`);
     }
 }
+/**
+ * Resumes the session's failed global topology sweep at its failed page.
+ *
+ * @returns An envelope confirming the retained progress, or a clear error when
+ * there is no failed sweep to retry.
+ */
+function procRetry_handle() {
+    const topology = procTopology_status();
+    if (topology.state !== 'failed') {
+        process.exitCode = 1;
+        return envelope_error('', undefined, `${chalk.yellow('proc retry: no failed topology sweep to retry')}\n`);
+    }
+    const progress = procCache_get().warmupProgress_get();
+    try {
+        const resumed = procTopology_retry();
+        void resumed.catch(() => { });
+        return envelope_ok(`${chalk.green(`/proc topology retry resumed at ${progress.loaded}/${progress.total}`)}\n`);
+    }
+    catch (error) {
+        const message = error instanceof Error ? error.message : String(error);
+        process.exitCode = 1;
+        return envelope_error('', undefined, `${chalk.red(`proc retry failed: ${message}`)}\n`);
+    }
+}
 /**
  * Handles `proc find <query>`: locates instances by id/plugin-name and reports
  * their /proc paths.
@@ -159,11 +244,19 @@ async function procRefresh_handle(args) {
  * @returns An envelope carrying the matched paths.
  */
 async function procFind_handle(args) {
-    const query = args[1];
+    const parsed = commandArgs_process(args.slice(1));
+    const query = parsed._[0];
     if (!query) {
         process.exitCode = 1;
         return envelope_error('', undefined, `${chalk.red('Usage: proc find <instance_id | plugin_name_substring>')}\n`);
     }
+    const numeric = parseInt(query, 10);
+    const isInstanceID = !isNaN(numeric) && String(numeric) === query;
+    if (!isInstanceID) {
+        const blocked = await procWarmup_guard(`proc find ${query}`, !!parsed['force']);
+        if (blocked)
+            return blocked;
+    }
     spinner.start(`Finding "${query}"...`);
     try {
         const cache = procCache_get();
@@ -197,6 +290,69 @@ async function procFind_handle(args) {
         return envelope_error('', undefined, `${chalk.red(`proc find failed: ${msg}`)}\n`);
     }
 }
+/**
+ * Maps a canonical CFS feed path into its matching `/proc` location.
+ *
+ * The CFS feed namespace and `/proc` share CUBE's feed and plugin-instance
+ * identifiers. A feed root maps directly; a job path maps only after its
+ * cached node confirms the same feed. An unknown node is loaded scoped to that
+ * one feed rather than by a global scan.
+ *
+ * @param cwd - Current CFS path to examine.
+ * @param cache - Current `/proc` cache.
+ * @returns The matching `/proc` path, or null when the CFS path is not canonical.
+ */
+async function procHere_canonicalPath_get(cwd, cache) {
+    if (!path_isInFeed(cwd))
+        return null;
+    const feedID = path_extractFeedID(cwd);
+    if (feedID === null || !cache.feed_get(feedID))
+        return null;
+    const instanceID = path_extractPluginInstanceID(cwd);
+    if (instanceID === null)
+        return `/proc/jobs/feed_${feedID}`;
+    let instance = cache.instance_get(instanceID);
+    if (!instance || instance.feedID !== feedID) {
+        await procFeed_ensureLoaded(feedID);
+        instance = cache.instance_get(instanceID);
+    }
+    if (!instance || instance.feedID !== feedID)
+        return null;
+    return cache.path_build(instanceID);
+}
+/**
+ * Returns from a CFS output directory to its producing `/proc` job node.
+ *
+ * Canonical `/home/<user>/feeds/feed_<id>` paths map directly using CUBE's
+ * stable feed and plugin-instance IDs. Other CFS output locations use the
+ * session's CUBE-supplied output-path provenance as a fallback.
+ *
+ * @param args - Full command args. No operands are accepted.
+ * @returns The directory-change envelope, or a clear error when provenance is unknown.
+ */
+async function procHere_handle(args) {
+    if (args.length > 1) {
+        process.exitCode = 1;
+        return envelope_error('', undefined, `${chalk.red('Usage: proc here')}\n`);
+    }
+    const cache = procCache_get();
+    const cwd = await session.getCWD();
+    const canonicalPath = await procHere_canonicalPath_get(cwd, cache);
+    if (canonicalPath)
+        return builtin_cd([canonicalPath]);
+    const source = cache.outputPath_match(cwd);
+    if (!source) {
+        process.exitCode = 1;
+        return envelope_error('', undefined, `${chalk.yellow('proc here: no matching /proc job is known for this path in the current session.')}\n` +
+            'Use a canonical CFS feed path, follow a job\'s `data` link first, or use `cd -` to return to the previous directory.\n');
+    }
+    const procPath = cache.path_build(source.id);
+    if (!procPath) {
+        process.exitCode = 1;
+        return envelope_error('', undefined, `${chalk.red('proc here: producing job is no longer available in /proc.')}\n`);
+    }
+    return builtin_cd([procPath]);
+}
 /**
  * Handles `proc feeds <query>`: lists cached feeds whose title matches.
  *
@@ -204,11 +360,15 @@ async function procFind_handle(args) {
  * @returns An envelope carrying the matched feeds.
  */
 async function procFeeds_handle(args) {
-    const query = args[1];
+    const parsed = commandArgs_process(args.slice(1));
+    const query = parsed._[0];
     if (!query) {
         process.exitCode = 1;
         return envelope_error('', undefined, `${chalk.red('Usage: proc feeds <title_substring>')}\n`);
     }
+    const blocked = await procWarmup_guard(`proc feeds ${query}`, !!parsed['force']);
+    if (blocked)
+        return blocked;
     const cache = procCache_get();
     const matches = cache.feeds_find(query);
     if (matches.length === 0) {
@@ -233,15 +393,32 @@ async function procStat_handle(args) {
     const feedArg = args[1];
     if (!feedArg) {
         const warmup = cache.warmupProgress_get();
-        const warmupLine = warmup.active
-            ? chalk.yellow(`in progress (${warmup.loaded} instances loaded)`)
+        const topology = procTopology_status();
+        const lifecycle = cache.lifecycle_get();
+        const context = await context_getSingle();
+        const counts = cache.feedScopeCounts_get(context.user ?? '');
+        const warmupLine = topology.state === 'failed'
+            ? chalk.red(`failed${topology.failure ? `: ${topology.failure}` : ''}`)
+            : topology.state === 'running' || warmup.active
+                ? chalk.yellow(warmup.active ? 'in progress' : 'initializing')
+                : cache.warmupComplete
+                    ? chalk.green('complete')
+                    : chalk.dim('not started');
+        const jobCount = warmup.total > 0
+            ? `${warmup.loaded}/${warmup.total}`
             : cache.warmupComplete
-                ? chalk.green('complete')
-                : chalk.dim('not started');
+                ? `${warmup.loaded}/0`
+                : `${warmup.loaded}/?`;
         let rendered = `${chalk.bold('proc cache summary')}\n`;
-        rendered += `  feeds known    : ${chalk.cyan(String(cache.feedIDs_get().length))}\n`;
-        rendered += `  instances      : ${chalk.cyan(String(cache.instances_count()))}\n`;
+        rendered += `  visible feeds  : ${chalk.cyan(String(counts.total))}\n`;
+        rendered += `    user         : ${chalk.cyan(String(counts.user))}\n`;
+        rendered += `    public       : ${chalk.cyan(String(counts.public))}\n`;
+        rendered += `    shared       : ${chalk.cyan(String(counts.shared))}\n`;
+        rendered += `  jobs loaded    : ${chalk.cyan(jobCount)}\n`;
         rendered += `  topology sweep : ${warmupLine}\n`;
+        rendered += `  cache state    : ${chalk.cyan(lifecycle.state)}\n`;
+        if (lifecycle.checkpointAt)
+            rendered += `  checkpoint     : ${chalk.cyan(lifecycle.checkpointAt)}\n`;
         return envelope_ok(rendered);
     }
     const feedID = feedId_parse(feedArg);
@@ -281,12 +458,18 @@ export async function builtin_proc(args) {
     if (!subcommand || subcommand === 'refresh') {
         return procRefresh_handle(args);
     }
+    if (subcommand === 'retry') {
+        return procRetry_handle();
+    }
     if (subcommand === 'jobs') {
         return jobs_subcmd(args.slice(1));
     }
     if (subcommand === 'find') {
         return procFind_handle(args);
     }
+    if (subcommand === 'here') {
+        return procHere_handle(args);
+    }
     if (subcommand === 'feeds') {
         return procFeeds_handle(args);
     }

package/dist/builtins/proc.js.map

@@ -1 +1 @@
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package/dist/builtins/res/compute.js

@@ -10,7 +10,7 @@
  * @module
  */
 import chalk from 'chalk';
-import { envelope_ok, envelope_error } from '@fnndsc/cumin';
+import { envelope_ok, envelope_error, errorStack } from '@fnndsc/cumin';
 import { commandArgs_process } from '../utils.js';
 import { computeResources_fetchList } from '@fnndsc/chili/commands/compute/list.js';
 import { computeFields_fetch } from '@fnndsc/chili/commands/compute/fields.js';
@@ -27,8 +27,13 @@ export async function builtin_compute(args) {
     const subcommand = parsed._[0];
     if (!subcommand || subcommand === 'list') {
         try {
-            const { resources } = await computeResources_fetchList();
-            return envelope_ok(`${computeList_render(resources, { table: !!parsed.table, csv: !!parsed.csv })}\n`);
+            const listResult = await computeResources_fetchList();
+            if (!listResult.ok) {
+                const lastError = errorStack.stack_pop();
+                process.exitCode = 1;
+                return envelope_error('', undefined, `${chalk.red(lastError ? lastError.message : 'compute list failed')}\n`);
+            }
+            return envelope_ok(`${computeList_render(listResult.value.resources, { table: !!parsed.table, csv: !!parsed.csv })}\n`);
         }
         catch (e) {
             const msg = e instanceof Error ? e.message : String(e);

package/dist/builtins/res/compute.js.map

@@ -1 +1 @@
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package/dist/builtins/res/group.d.ts

@@ -3,6 +3,6 @@ import { CommandEnvelope } from '@fnndsc/cumin';
  * Builtin handler for the `group` command.
  *
  * @param args - Parsed command arguments for the group command.
- * @returns An envelope carrying the group listing or fields.
+ * @returns An envelope carrying a group listing, membership result, or usage error.
  */
 export declare function builtin_group(args: string[]): Promise<CommandEnvelope>;

package/dist/builtins/res/group.js

@@ -1,21 +1,100 @@
 /**
  * @file Builtin group command.
  *
- * Subcommands: list, search, inspect
+ * Subcommands: list, search, inspect, members, adduser, removeuser
  * [admin]: create, delete, adduser, removeuser
  * Singular/plural aliases: group / groups
  */
 import chalk from 'chalk';
-import { envelope_ok, envelope_error } from '@fnndsc/cumin';
+import { envelope_ok, envelope_error, } from '@fnndsc/cumin';
 import { commandArgs_process } from '../utils.js';
 import { groups_fetchList } from '@fnndsc/chili/commands/groups/list.js';
 import { groupFields_fetch } from '@fnndsc/chili/commands/groups/fields.js';
+import { groupMembers_fetch, groupReference_resolve, groupUser_add, groupUser_remove, } from '@fnndsc/chili/commands/groups/membership.js';
 import { table_render } from '@fnndsc/chili/screen/screen.js';
+import { authorizationFailure_is, sudoHint_build } from '../../core/elevation.js';
+/**
+ * Renders an error for a failed group membership operation.
+ *
+ * @param message - User-facing error or usage detail.
+ * @returns An error command envelope.
+ */
+function group_error(message) {
+    process.exitCode = 1;
+    return envelope_error('', undefined, `${chalk.red(message)}\n`);
+}
+/**
+ * Renders the human-readable name and stable numeric ID of one group.
+ *
+ * @param group - Resolved CUBE group identity.
+ * @returns Operator-facing group label.
+ */
+function group_label(group) {
+    return `${group.name} (${group.id})`;
+}
+/**
+ * Applies one membership operation to every named user and renders its outcome.
+ *
+ * Current membership is read once so adding an existing member or removing a
+ * non-member is an idempotent no-op. CUBE mutations remain individual requests:
+ * all requested users are attempted and a partial batch reports every result.
+ *
+ * @param group - Resolved target group.
+ * @param usernames - Usernames in operator-supplied order.
+ * @param operation - Whether this batch adds or removes members.
+ * @returns Success envelope, or an error envelope after any failed mutation.
+ */
+async function groupMembership_batch(group, usernames, operation) {
+    const existing = await groupMembers_fetch(group.id);
+    if (!existing.ok)
+        return group_error(existing.error);
+    const members = new Set(existing.value.map((member) => member.username));
+    let rendered = '';
+    let renderedErr = '';
+    let failures = 0;
+    let elevationHintShown = false;
+    for (const username of usernames) {
+        const present = members.has(username);
+        if (operation === 'add' && present) {
+            rendered += `${chalk.gray(`${username} is already a member of ${group_label(group)}.`)}\n`;
+            continue;
+        }
+        if (operation === 'remove' && !present) {
+            rendered += `${chalk.gray(`${username} was not a member of ${group_label(group)}.`)}\n`;
+            continue;
+        }
+        const result = operation === 'add'
+            ? await groupUser_add(group.id, username)
+            : await groupUser_remove(group.id, username);
+        if (!result.ok) {
+            failures += 1;
+            renderedErr += `${chalk.red(`Could not ${operation} ${username} ${operation === 'add' ? 'to' : 'from'} ${group_label(group)}: ${result.error}`)}\n`;
+            if (!elevationHintShown && authorizationFailure_is(result.error)) {
+                renderedErr += sudoHint_build(`group ${operation}user`, [group.name, ...usernames]);
+                elevationHintShown = true;
+            }
+            continue;
+        }
+        if (operation === 'add') {
+            members.add(username);
+            rendered += `${chalk.green(`Added ${username} to ${group_label(group)}.`)}\n`;
+        }
+        else {
+            members.delete(username);
+            rendered += `${chalk.green(`Removed ${username} from ${group_label(group)}.`)}\n`;
+        }
+    }
+    if (failures > 0) {
+        process.exitCode = 1;
+        return envelope_error(rendered, undefined, renderedErr);
+    }
+    return envelope_ok(rendered);
+}
 /**
  * Builtin handler for the `group` command.
  *
  * @param args - Parsed command arguments for the group command.
- * @returns An envelope carrying the group listing or fields.
+ * @returns An envelope carrying a group listing, membership result, or usage error.
  */
 export async function builtin_group(args) {
     const parsed = commandArgs_process(args);
@@ -35,16 +114,54 @@ export async function builtin_group(args) {
     }
     if (subcommand === 'search') {
         const query = parsed._[1] ?? '';
-        return builtin_group([...args.filter((a) => a !== subcommand), `--search`, query]);
+        const search = query.includes(':') ? query : `name_icontains:${query}`;
+        return builtin_group(['--search', search]);
     }
     if (subcommand === 'inspect') {
+        const reference = parsed._[1];
+        if (reference !== undefined) {
+            const resolved = await groupReference_resolve(reference);
+            if (!resolved.ok)
+                return group_error(resolved.error);
+            return envelope_ok(table_render([{ id: resolved.value.id, name: resolved.value.name }], ['id', 'name'], { title: { title: `Group ${group_label(resolved.value)}`, justification: 'center' } }));
+        }
         const fields = await groupFields_fetch();
         if (fields && fields.length > 0) {
             return envelope_ok(table_render(fields.map((f) => ({ field: f })), ['field'], { title: { title: 'Group fields', justification: 'center' } }));
         }
         return envelope_ok(`${chalk.gray('No fields found for groups.')}\n`);
     }
+    if (subcommand === 'members') {
+        const reference = parsed._[1];
+        if (reference === undefined)
+            return group_error('Usage: group members <group>');
+        const resolved = await groupReference_resolve(reference);
+        if (!resolved.ok)
+            return group_error(resolved.error);
+        const result = await groupMembers_fetch(resolved.value.id);
+        if (!result.ok)
+            return group_error(result.error);
+        if (result.value.length === 0) {
+            return envelope_ok(`${chalk.gray(`Group ${group_label(resolved.value)} has no users.`)}\n`);
+        }
+        const rows = result.value.map((member) => ({
+            id: member.id,
+            username: member.username,
+        }));
+        return envelope_ok(table_render(rows, ['id', 'username'], { title: { title: `Group ${group_label(resolved.value)} users`, justification: 'center' } }));
+    }
+    if (subcommand === 'adduser' || subcommand === 'removeuser') {
+        const reference = parsed._[1];
+        const usernames = parsed._.slice(2);
+        if (reference === undefined || usernames.length === 0) {
+            return group_error(`Usage: group ${subcommand} <group> <username...>`);
+        }
+        const resolved = await groupReference_resolve(reference);
+        if (!resolved.ok)
+            return group_error(resolved.error);
+        return groupMembership_batch(resolved.value, usernames, subcommand === 'adduser' ? 'add' : 'remove');
+    }
     process.exitCode = 1;
-    return envelope_error(`${chalk.red(`Unknown subcommand: ${subcommand}. Usage: groups <list|search|inspect>`)}\n`);
+    return envelope_error(`${chalk.red(`Unknown subcommand: ${subcommand}. Usage: groups <list|search|inspect|members|adduser|removeuser>`)}\n`);
 }
 //# sourceMappingURL=group.js.map

package/dist/builtins/res/group.js.map

@@ -1 +1 @@
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package/dist/builtins/res/pipeline.args.d.ts

@@ -5,12 +5,16 @@
  *
  * @module
  */
+import type { PipelineInvocationBinding } from '@fnndsc/salsa';
 /**
  * Optional overrides parsed from `pipeline run` arguments.
  */
 export interface PipelineRunOverrides {
     computeOverride: string | undefined;
     previousOverride: number | undefined;
+    paramFile: string | undefined;
+    bindings: PipelineInvocationBinding[];
+    parseError: string | null;
 }
 /**
  * Parses `--compute <resource>` and `--previous <inst_id>` overrides from