@fnndsc/brasa 0.56.4 → 0.57.0

package/dist/builtins/pluginExecute.js

@@ -21,6 +21,7 @@ import { errorStack } from '@fnndsc/fond';
 import { exitCode_set } from '../core/handlerRun.js';
 import { path_resolve } from '../core/paths.js';
 import { OperandRefusal, operands_read, stage_lines, stage_make, stageMade_lines, stageWriter_default, stageWriter_none } from './operands.js';
+import { pluginDeclaration_get, pluginWords_parse } from '../chris/binDeclarations.js';
 import { echoNode_render, echoParameters_render } from './runEcho.js';
 import { operandRuns_split } from './operandRuns.js';
 /**
@@ -63,13 +64,14 @@ async function pluginParameters_read(pluginName) {
     }
 }
 /**
- * Executes a plugin in the current directory context.
+ * Executes a plugin in the current directory context: its line parsed
+ * against the declaration made from CUBE's parameters (binDeclarations.ts),
+ * a bad line refused before anything runs.
  *
  * This function is called when the user types a plugin name that exists in /bin.
- * It handles parameter parsing, interactive prompts, and delegates execution to salsa.
  *
  * @param pluginName - Full plugin name with version (e.g., pl-dcm2niix-v2.1.1).
- * @param args - Array of command line arguments.
+ * @param args - The words after it, carrying their shell words when a line gave them.
  * @param place - Where the run stands instead of the session's cwd, so a
  *   caller can run off a node without moving the operator (`gather process`
  *   runs off its cohort's feed root).
@@ -85,16 +87,51 @@ async function pluginParameters_read(pluginName) {
  * ```
  */
 export async function builtin_executePlugin(pluginName, args, place, dry = false) {
+    const declaration = await pluginDeclaration_get(pluginName);
+    if (declaration === null) {
+        sink_errLine(chalk.red(`${pluginName}: could not read the plugin's parameters from CUBE, so the line cannot be read`));
+        exitCode_set(1);
+        return envelope_error('');
+    }
+    const parsed = await pluginWords_parse(declaration, args);
+    if (!parsed.ok) {
+        sink_errLine(chalk.red(parsed.refusal));
+        exitCode_set(1);
+        return envelope_error('');
+    }
+    return pluginParsed_run(pluginName, parsed.line, place, dry);
+}
+/**
+ * Runs a plugin line already read: a look at the plugin when it asks for
+ * one, else one run per directory operand, or one run.
+ *
+ * @param pluginName - Full plugin name with version.
+ * @param line - The line, read against the plugin's declaration.
+ * @param place - Where the run stands instead of the session's cwd.
+ * @param dry - Resolve the run and print it, creating and running nothing.
+ * @returns Command envelope whose status matches the run.
+ *
+ * @example
+ * ```ts
+ * await pluginParsed_run('pl-dircopy-v2.1.1', { operands: ['~/uploads'], parameters: {}, context: [], detach: false, inspect: null });
+ * ```
+ */
+export async function pluginParsed_run(pluginName, line, place, dry = false) {
+    if (line.inspect !== null) {
+        const flags = line.inspect === 'parameters' ? ['--parameters'] : line.inspect === 'readme' ? ['--readme'] : ['--readme', '--raw'];
+        const { pluginExecutable_handle } = await import('./executable.js');
+        return (await pluginExecutable_handle(pluginName, flags)) ?? envelope_ok('');
+    }
     if (place !== undefined)
-        return pluginRun_execute(pluginName, args, place, dry);
+        return pluginRun_execute(pluginName, line, place, dry);
     // Several directory operands are several runs, one each, and file operands
     // stand in one node; to an fs plugin every operand is its one `dir`,
     // untranslated, so that line is one run and its paths are not looked at.
     let runs;
     try {
-        const operands = await operands_read(args);
+        const operands = await operands_read(line.operands);
         const placed = operands.directories.length > 1 || operands.subjects.length > 0;
-        runs = placed && await pluginKind_read(pluginName) === 'fs' ? [args] : await operandRuns_split(args);
+        runs = placed && await pluginKind_read(pluginName) === 'fs' ? [[...line.operands]] : await operandRuns_split(line.operands);
     }
     catch (error) {
         if (!(error instanceof OperandRefusal))
@@ -103,21 +140,20 @@ export async function builtin_executePlugin(pluginName, args, place, dry = false
         return envelope_error('');
     }
     if (runs.length === 1)
-        return pluginRun_execute(pluginName, args, undefined, dry);
+        return pluginRun_execute(pluginName, line, undefined, dry);
     // Every run is dispatched before any is waited for; then one wait holds the line for them all.
-    const detach = args.includes('--detach');
     const instanceIDs = [];
     let last = envelope_ok('');
     let failed = false;
     for (const words of runs) {
         sink_dataLine(chalk.gray(`${pluginName} ${words[0]}:`));
-        last = await pluginRun_execute(pluginName, detach ? words : [...words, '--detach'], undefined, dry);
+        last = await pluginRun_execute(pluginName, { ...line, operands: words, detach: true }, undefined, dry);
         failed ||= last.status === 'error';
         const instanceID = last.model?.kind === 'run.scheduled' ? last.model.data.instanceId : undefined;
         if (typeof instanceID === 'number')
             instanceIDs.push(instanceID);
     }
-    if (!detach && instanceIDs.length > 0) {
+    if (!line.detach && instanceIDs.length > 0) {
         const settlement = await runs_awaitSettled(instanceIDs, pluginName);
         sink_dataLine(settlement_render(settlement, pluginName));
         if (settlement.outcome === 'settled' && settlement.failed > 0)
@@ -129,29 +165,32 @@ export async function builtin_executePlugin(pluginName, args, place, dry = false
  * Executes one plugin run: at most one directory operand, or file operands.
  *
  * @param pluginName - Full plugin name with version.
- * @param args - Array of command line arguments.
+ * @param line - The line, read.
  * @param place - Where the run stands instead of the session's cwd.
  * @param dry - Resolve the run and print it, creating and running nothing.
  * @returns Command envelope whose status matches parsing and execution.
  */
-async function pluginRun_execute(pluginName, args, place, dry = false) {
+async function pluginRun_execute(pluginName, line, place, dry = false) {
     try {
-        // 0. `--detach` is the SESSION's flag, never the plugin's: it says the
-        //    operator wants the handle now rather than the outcome later, so it
-        //    is taken out of the line before the plugin's own parameters are
-        //    read. Left in, it would be posted to CUBE as a plugin parameter.
-        const detach = args.includes('--detach');
-        args = args.filter((arg) => arg !== '--detach');
-        // 0b. The input operand (operands.ts): a directory replaces cwd; files
-        //     are shaped into a stage the run roots the feed with; to an fs
-        //     plugin an operand is its `dir`, untranslated.
+        // `--detach` is the SESSION's option, never the plugin's: the line read
+        // it apart from the plugin's parameters, so it is never posted to CUBE.
+        const detach = line.detach;
+        // The input operand (operands.ts): a directory replaces cwd; files are
+        // shaped into a stage the run roots the feed with; to an fs plugin an
+        // operand is its `dir`, untranslated. A bare `key=value` among the
+        // operands is the plugin's, as it always was.
         let operandPlace = null;
         let stage = null;
         let operandDir = null;
+        let assigned = [];
+        if (place !== undefined && line.operands.length > 0) {
+            sink_errLine(chalk.red(`${pluginName}: an operand is not taken here; the run stands at ${place}`));
+            return envelope_error('');
+        }
         if (place === undefined) {
             let operands;
             try {
-                operands = await operands_read(args);
+                operands = await operands_read(line.operands);
             }
             catch (error) {
                 if (!(error instanceof OperandRefusal))
@@ -159,7 +198,7 @@ async function pluginRun_execute(pluginName, args, place, dry = false) {
                 sink_errLine(chalk.red(`${pluginName}: ${error.message}`));
                 return envelope_error('');
             }
-            args = operands.rest;
+            assigned = operands.rest;
             if (operands.directory !== null || operands.subjects.length > 0) {
                 const kind = await pluginKind_read(pluginName);
                 if (kind === null) {
@@ -189,22 +228,18 @@ async function pluginRun_execute(pluginName, args, place, dry = false) {
                     }
                     if (dry)
                         sink_dataLine(chalk.cyan(`would stage under ${stage.path}`));
-                    for (const line of stage_lines(stage))
-                        sink_dataLine(chalk.cyan(line));
+                    for (const stageLine of stage_lines(stage))
+                        sink_dataLine(chalk.cyan(stageLine));
                     operandPlace = stage.path;
                 }
             }
         }
-        // 1. Split the already-tokenized arguments on the context delimiter.
-        const delimiterIndex = args.indexOf('--');
-        const pluginArgTokens = delimiterIndex === -1 ? args : args.slice(0, delimiterIndex);
-        const contextArgTokens = delimiterIndex === -1 ? [] : args.slice(delimiterIndex + 1);
-        // 2. Parse both sets of parameters
-        let pluginParams = {};
+        // The parameters the line gave, and the context after its `--`.
+        let pluginParams = { ...line.parameters };
         let contextParams = {};
-        if (pluginArgTokens.length > 0) {
+        if (assigned.length > 0) {
             try {
-                pluginParams = executableArguments_parse(pluginArgTokens);
+                pluginParams = { ...pluginParams, ...executableArguments_parse(assigned) };
             }
             catch (e) {
                 const msg = e instanceof Error ? e.message : String(e);
@@ -214,6 +249,7 @@ async function pluginRun_execute(pluginName, args, place, dry = false) {
         }
         if (operandDir !== null)
             pluginParams['dir'] = operandDir;
+        const contextArgTokens = line.context;
         if (contextArgTokens.length > 0) {
             try {
                 contextParams = executableArguments_parse(contextArgTokens);

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package/dist/builtins/res/pipeline.d.ts

@@ -15,9 +15,57 @@
  *
  * @module
  */
+import type { PipelineInvocationBinding } from '@fnndsc/salsa';
 import { type RunSettlement } from './runWait.js';
 import type { PipelineScheduled } from '../../api/models.js';
 import { type CommandEnvelope } from '@fnndsc/menu';
+/**
+ * Handles `pipeline info <name|id>`.
+ *
+ * @param nameOrId - The pipeline.
+ * @returns Command envelope whose status matches resolution and manifest fetching.
+ *
+ * @example
+ * ```ts
+ * await pipelineInfo_handle('PHI_detection');
+ * ```
+ */
+export declare function pipelineInfo_handle(nameOrId: string): Promise<CommandEnvelope>;
+/** One pipeline run, as a line asks for it: the pipeline, where it attaches, its overlays, and how the line holds it. */
+export interface PipelineRunRequest {
+    /** The pipeline: its name, id or `/bin` name. */
+    readonly pipeline: string;
+    /** The compute resource every node runs on, when given. */
+    readonly compute?: string;
+    /** The instance the run attaches to; absent, the feed node the session stands in. */
+    readonly previous?: number;
+    /** A CFS file of sparse YAML overrides, when given. */
+    readonly paramFile?: string;
+    /** The node overrides, `--<node>.<field> <value>`. */
+    readonly bindings: readonly PipelineInvocationBinding[];
+    /** Return the handles at once rather than wait for the run. */
+    readonly detach: boolean;
+    /** Echo every parameter of every piping. */
+    readonly verbose: boolean;
+    /** Resolve the run and print it, creating nothing (`whatif`). */
+    readonly dry: boolean;
+    /** A dry run on a feed that would be rooted first, so no node exists to attach to. */
+    readonly dryNewFeed: boolean;
+}
+/**
+ * Runs one pipeline: from the instance the request names or the feed node
+ * the session stands in, with the overlays it gives; the resolved call is
+ * echoed first, and a dry run stops there.
+ *
+ * @param request - The run.
+ * @returns Command envelope whose status matches Workflow creation.
+ *
+ * @example
+ * ```ts
+ * await pipelineRun_execute({ pipeline: 'PHI_detection', bindings: [], detach: false, verbose: false, dry: true, dryNewFeed: false });
+ * ```
+ */
+export declare function pipelineRun_execute(request: PipelineRunRequest): Promise<CommandEnvelope>;
 /** The model kind a scheduled pipeline travels under. */
 export declare const PIPELINE_SCHEDULED_KIND: string;
 /**
@@ -34,8 +82,189 @@ export declare const PIPELINE_SCHEDULED_KIND: string;
  */
 export declare function pipelineScheduled_make(pipelineName: string, workflowId: number, feedId: number, instanceIds: ReadonlyArray<number>, settlement: RunSettlement | null, newFeed?: boolean): PipelineScheduled;
 /**
- * Manages ChRIS pipeline registration, inspection, and execution.
+ * Handles `pipeline source <name|id>`.
+ *
+ * @param nameOrId - The pipeline.
+ * @returns Command envelope whose status matches source retrieval.
+ *
+ * @example
+ * ```ts
+ * await pipelineSource_handle('PHI_detection');
+ * ```
+ */
+export declare function pipelineSource_handle(nameOrId: string): Promise<CommandEnvelope>;
+/**
+ * Handles `pipeline manifest <name|id|slug>`.
+ *
+ * @param specifier - The pipeline, its words joined.
+ * @returns Complete registered invocation manifest as serializable YAML.
+ *
+ * @example
+ * ```ts
+ * await pipelineManifestCommand_handle('PHI_detection');
+ * ```
+ */
+export declare function pipelineManifestCommand_handle(specifier: string): Promise<CommandEnvelope>;
+/**
+ * Handles shallow and SignalFlow pipeline diagram output.
+ *
+ * @param specifier - The pipeline, its words joined.
+ * @param withArguments - Each node's stored arguments inline.
+ * @param signalflow - SignalFlow YAML instead of the tree.
+ * @returns The diagram, or the refusal.
+ *
+ * @example
+ * ```ts
+ * await pipelineDiagramCommand_handle('PHI_detection', false, true);
+ * ```
+ */
+export declare function pipelineDiagramCommand_handle(specifier: string, withArguments: boolean, signalflow: boolean): Promise<CommandEnvelope>;
+/**
+ * `pipeline <list|search|inspect|info|manifest|run|source|diagram> …`: the
+ * declaration. `pipelines` is the same command, and a read.
+ *
+ * @example
+ * ```ts
+ * commands_register({ declarations: [pipelineCommand] }, 'backend');
+ * ```
+ */
+export declare const pipelineCommand: import("../../core/commandDeclaration.js").CommandDeclaration<{
+    readonly bare: {
+        readonly summary: "Name the subcommands, and the feed node a run here starts from";
+    };
+    readonly subcommands: {
+        readonly list: {
+            readonly summary: "List the registered pipelines";
+            readonly operands: readonly [{
+                readonly name: "search";
+                readonly kind: "word";
+                readonly optional: true;
+                readonly summary: "Only those whose name holds this";
+            }];
+        };
+        readonly search: {
+            readonly summary: "List the pipelines whose name holds a word (list <word>)";
+            readonly operands: readonly [{
+                readonly name: "term";
+                readonly kind: "word";
+                readonly optional: true;
+                readonly summary: "The word";
+            }];
+        };
+        readonly inspect: {
+            readonly summary: "Name the fields a pipeline has";
+        };
+        readonly info: {
+            readonly summary: "Show a pipeline's nodes, plugins and topology";
+            readonly operands: readonly [{
+                readonly name: "pipeline";
+                readonly kind: "pipeline";
+                readonly summary: "The pipeline: its name, its id, or its /bin name";
+            }];
+        };
+        readonly manifest: {
+            readonly summary: "Emit the complete registered invocation YAML";
+            readonly operands: readonly [{
+                readonly name: "pipeline";
+                readonly kind: "pipeline";
+                readonly repeat: true;
+                readonly summary: "The pipeline: its name (in several words, joined), its id, or its /bin name";
+            }];
+        };
+        readonly run: {
+            readonly summary: "Run a pipeline from the feed node you are in, and wait for it";
+            readonly operands: readonly [{
+                readonly name: "pipeline";
+                readonly kind: "pipeline";
+                readonly summary: "The pipeline: its name, its id, or its /bin name";
+            }];
+            readonly options: {
+                readonly compute: {
+                    readonly long: "compute";
+                    readonly summary: "Run every node on this compute resource";
+                    readonly value: {
+                        readonly name: "resource";
+                        readonly kind: "compute";
+                    };
+                };
+                readonly previous: {
+                    readonly long: "previous";
+                    readonly summary: "Start from this instance (default: the feed node you are in)";
+                    readonly value: {
+                        readonly name: "instance";
+                        readonly kind: "int";
+                        readonly min: 1;
+                    };
+                };
+                readonly paramFile: {
+                    readonly long: "paramFile";
+                    readonly summary: "Apply one sparse YAML invocation overlay, a CFS file";
+                    readonly value: {
+                        readonly name: "file";
+                        readonly kind: "cfsPath";
+                    };
+                };
+                readonly detach: {
+                    readonly long: "detach";
+                    readonly summary: "Return the instance ids at once, without waiting";
+                };
+                readonly verbose: {
+                    readonly long: "verbose";
+                    readonly summary: "Echo every parameter of every piping before the run";
+                };
+                readonly bindings: {
+                    readonly long: "<node>.<field>";
+                    readonly summary: "Override one parameter or execution control of one node (@<piping id> names a node whose title is ambiguous)";
+                    readonly value: {
+                        readonly name: "value";
+                        readonly kind: "word";
+                    };
+                    readonly family: {
+                        readonly pattern: RegExp;
+                        readonly names_list: (operands: readonly string[]) => Promise<string[]>;
+                    };
+                };
+            };
+        };
+        readonly source: {
+            readonly summary: "Show the pipeline YAML source";
+            readonly operands: readonly [{
+                readonly name: "pipeline";
+                readonly kind: "pipeline";
+                readonly summary: "The pipeline: its name, its id, or its /bin name";
+            }];
+        };
+        readonly diagram: {
+            readonly summary: "Draw the pipeline as a shallow tree";
+            readonly operands: readonly [{
+                readonly name: "pipeline";
+                readonly kind: "pipeline";
+                readonly repeat: true;
+                readonly summary: "The pipeline: its name (in several words, joined), its id, or its /bin name";
+            }];
+            readonly options: {
+                readonly withargs: {
+                    readonly long: "withargs";
+                    readonly summary: "Each node's stored non-null arguments inline";
+                };
+                readonly signalflow: {
+                    readonly long: "signalflow";
+                    readonly summary: "Emit SignalFlow YAML instead of the tree";
+                };
+            };
+        };
+    };
+}>;
+/**
+ * Manages ChRIS pipeline registration, inspection, and execution: a
+ * `pipeline` line over words already split, through the declaration.
+ *
+ * @param args - The words after `pipeline`.
+ * @returns The answer, or the refusal of a bad line.
  *
- * @param args - Command arguments.
+ * @example
+ * ```ts
+ * await builtin_pipeline(['run', 'PHI_detection', '--previous', '42']);
+ * ```
  */
 export declare function builtin_pipeline(args: string[]): Promise<CommandEnvelope>;