@fnndsc/brasa 0.56.0 → 0.56.2

package/dist/chris/chrisCommands.js

@@ -1,5 +1,5 @@
 import { builtin_chrisfetch, builtin_ping } from '../builtins/games/chrislab.js';
-import { builtin_chmod, builtin_compute, builtin_config, builtin_connect, builtin_context, builtin_cubepath, builtin_dcm, builtin_dirs, builtin_download, builtin_feed, builtin_files, builtin_gather, builtin_getfacl, builtin_getfattr, builtin_group, builtin_id, builtin_image, builtin_links, builtin_logout, builtin_pacs, builtin_parametersofplugin, builtin_physicalmode, builtin_pipeline, builtin_plugin, builtin_plugininstance, builtin_pluginmeta, builtin_pull, builtin_query, builtin_setfacl, builtin_setfattr, builtin_store, builtin_tag, builtin_upload, builtin_user, builtin_whereami, builtin_whoami, builtin_workflow } from '../builtins/index.js';
+import { builtin_chmod, builtin_compute, builtin_config, builtin_connect, builtin_context, builtin_cubepath, builtin_dcm, builtin_dirs, builtin_feed, builtin_files, builtin_gather, builtin_getfacl, builtin_getfattr, builtin_group, builtin_id, builtin_image, builtin_links, builtin_logout, builtin_pacs, builtin_parametersofplugin, builtin_physicalmode, builtin_pipeline, builtin_plugin, builtin_plugininstance, builtin_pluginmeta, builtin_pull, builtin_query, builtin_setfacl, builtin_setfattr, builtin_store, builtin_tag, builtin_upload, builtin_user, builtin_whereami, builtin_whoami, builtin_workflow } from '../builtins/index.js';
 import { builtin_netstat } from '../builtins/net/netstat.js';
 import { builtin_proc } from '../builtins/proc.js';
 import { chiliCommand_run } from './chiliDelegate.js';
@@ -12,7 +12,8 @@ import { builtin_record } from '../builtins/res/record.js';
 import { builtin_motd } from '../builtins/sys/motd.js';
 import { chrisHelp } from './help.js';
 import { builtin_whatif } from './commandFallback.js';
-import { builtin_berth } from '../builtins/berth/berth.js';
+import { berthCommand } from '../builtins/berth/berth.js';
+import { downloadCommand } from '../builtins/fs/download.js';
 const envelope = {
     setfacl: builtin_setfacl,
     getfacl: builtin_getfacl,
@@ -67,7 +68,6 @@ const envelope = {
     pacsretrieve: (args) => chiliCommand_run('pacsretrieve', ['-s', ...args]),
     connect: builtin_connect,
     upload: builtin_upload,
-    download: builtin_download,
     store: builtin_store,
     config: builtin_config,
     pacs: builtin_pacs,
@@ -85,7 +85,6 @@ const envelope = {
     du: builtin_du,
     record: builtin_record,
     edit: builtin_edit,
-    berth: builtin_berth,
 };
 const plain = {
     connect: envelopeHandler_wrap(builtin_connect),
@@ -106,7 +105,6 @@ const plain = {
     cubepath: envelopeHandler_wrap(builtin_cubepath),
     dcm: envelopeHandler_wrap(builtin_dcm),
     image: envelopeHandler_wrap(builtin_image),
-    download: envelopeHandler_wrap(builtin_download),
     config: envelopeHandler_wrap(builtin_config),
     context: envelopeHandler_wrap(builtin_context),
     parametersofplugin: envelopeHandler_wrap(builtin_parametersofplugin),
@@ -157,7 +155,6 @@ const plain = {
     tree: envelopeHandler_wrap(builtin_tree),
     du: envelopeHandler_wrap(builtin_du),
     record: envelopeHandler_wrap(builtin_record),
-    berth: envelopeHandler_wrap(builtin_berth),
 };
 /** The ChRIS backend commands: their handlers. Their help is registered from `builtins/help.ts`, which holds it. */
 /**
@@ -173,16 +170,16 @@ const holds = {
         // of the session: `image` answers with an intent a surface draws, `dcm`
         // with a model.
         'dcm', 'image',
-        // A berth's anchors are the berth's own disk: anchoring reads CUBE and
-        // writes there, and changes no piece of the session.
-        'berth',
     ].map((name) => [name, []])),
     gather: ['cohort'],
 };
+/** The ChRIS commands declared in one record each: grammar, kinds, handler, holds and help together. */
+const declarations = [downloadCommand, berthCommand];
 export const chrisCommands = {
     envelope,
     plain,
     help: chrisHelp,
     holds,
+    declarations,
 };
 //# sourceMappingURL=chrisCommands.js.map

package/dist/chris/chrisCommands.js.map

@@ -1 +1 @@
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+{"version":3,"file":"chrisCommands.js","sourceRoot":"","sources":["../../src/chris/chrisCommands.ts"],"names":[],"mappings":"AAYA,OAAO,EAAE,kBAAkB,EAAE,YAAY,EAAE,MAAM,+BAA+B,CAAC;AACjF,OAAO,EAAE,aAAa,EAAE,eAAe,EAAE,cAAc,EAAE,eAAe,EAAE,eAAe,EAAE,gBAAgB,EAAE,WAAW,EAAE,YAAY,EAAE,YAAY,EAAE,aAAa,EAAE,cAAc,EAAE,eAAe,EAAE,gBAAgB,EAAE,aAAa,EAAE,UAAU,EAAE,aAAa,EAAE,aAAa,EAAE,cAAc,EAAE,YAAY,EAAE,0BAA0B,EAAE,oBAAoB,EAAE,gBAAgB,EAAE,cAAc,EAAE,sBAAsB,EAAE,kBAAkB,EAAE,YAAY,EAAE,aAAa,EAAE,eAAe,EAAE,gBAAgB,EAAE,aAAa,EAAE,WAAW,EAAE,cAAc,EAAE,YAAY,EAAE,gBAAgB,EAAE,cAAc,EAAE,gBAAgB,EAAE,MAAM,sBAAsB,CAAC;AAC1nB,OAAO,EAAE,eAAe,EAAE,MAAM,4BAA4B,CAAC;AAC7D,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AACnD,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAC;AAEvD,OAAO,EAAE,YAAY,EAAE,cAAc,EAAE,iBAAiB,EAAE,eAAe,EAAE,WAAW,EAAE,MAAM,4BAA4B,CAAC;AAC3H,OAAO,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAC;AAClD,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,EAAE,cAAc,EAAE,MAAM,2BAA2B,CAAC;AAC3D,OAAO,EAAE,YAAY,EAAE,MAAM,yBAAyB,CAAC;AACvD,OAAO,EAAE,SAAS,EAAE,MAAM,WAAW,CAAC;AACtC,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AAC1D,OAAO,EAAE,eAAe,EAAE,MAAM,4BAA4B,CAAC;AAG7D,MAAM,QAAQ,GAAoC;IAChD,OAAO,EAAE,eAAe;IACxB,OAAO,EAAE,eAAe;IACxB,KAAK,EAAE,aAAa;IACpB,QAAQ,EAAE,gBAAgB;IAC1B,QAAQ,EAAE,gBAAgB;IAC1B,OAAO,EAAE,eAAe;IACxB,EAAE,EAAE,UAAU;IACd,MAAM,EAAE,cAAc;IACtB,QAAQ,EAAE,gBAAgB;IAC1B,YAAY,EAAE,oBAAoB;IAClC,IAAI,EAAE,YAAY;IAClB,UAAU,EAAE,kBAAkB;IAC9B,IAAI,EAAE,YAAY;IAClB,MAAM,EAAE,cAAc;IACtB,QAAQ,EAAE,gBAAgB;IAC1B,GAAG,EAAE,WAAW;IAChB,KAAK,EAAE,aAAa;IACpB,KAAK,EAAE,aAAa;IACpB,IAAI,EAAE,YAAY;IAClB,KAAK,EAAE,YAAY;IACnB,OAAO,EAAE,eAAe;IACxB,QAAQ,EAAE,eAAe;IACzB,GAAG,EAAE,WAAW;IAChB,IAAI,EAAE,WAAW;IACjB,MAAM,EAAE,cAAc;IACtB,KAAK,EAAE,aAAa;IACpB,MAAM,EAAE,aAAa;IACrB,IAAI,EAAE,YAAY;IAClB,KAAK,EAAE,YAAY;IACnB,UAAU,EAAE,kBAAkB;IAC9B,WAAW,EAAE,kBAAkB;IAC/B,IAAI,EAAE,kBAAkB;IACxB,KAAK,EAAE,kBAAkB;IACzB,cAAc,EAAE,sBAAsB;IACtC,eAAe,EAAE,sBAAsB;IACvC,QAAQ,EAAE,sBAAsB;IAChC,SAAS,EAAE,sBAAsB;IACjC,GAAG,EAAE,sBAAsB;IAC3B,IAAI,EAAE,sBAAsB;IAC5B,QAAQ,EAAE,gBAAgB;IAC1B,SAAS,EAAE,gBAAgB;IAC3B,KAAK,EAAE,aAAa;IACpB,KAAK,EAAE,aAAa;IACpB,IAAI,EAAE,YAAY;IAClB,OAAO,EAAE,eAAe;IACxB,kBAAkB,EAAE,0BAA0B;IAC9C,MAAM,EAAE,cAAc;IACtB,OAAO,EAAE,cAAc;IACvB,WAAW,EAAE,CAAC,IAAc,EAA4B,EAAE,CAAC,gBAAgB,CAAC,aAAa,EAAE,CAAC,IAAI,EAAE,GAAG,IAAI,CAAC,CAAC;IAC3G,WAAW,EAAE,CAAC,IAAc,EAA4B,EAAE,CAAC,gBAAgB,CAAC,aAAa,EAAE,CAAC,IAAI,EAAE,GAAG,IAAI,CAAC,CAAC;IAC3G,YAAY,EAAE,CAAC,IAAc,EAA4B,EAAE,CAAC,gBAAgB,CAAC,cAAc,EAAE,CAAC,IAAI,EAAE,GAAG,IAAI,CAAC,CAAC;IAC7G,OAAO,EAAE,eAAe;IACxB,MAAM,EAAE,cAAc;IACtB,KAAK,EAAE,aAAa;IACpB,MAAM,EAAE,cAAc;IACtB,IAAI,EAAE,YAAY;IAClB,IAAI,EAAE,YAAY;IAClB,QAAQ,EAAE,gBAAgB;IAC1B,MAAM,EAAE,cAAc;IACtB,SAAS,EAAE,gBAAgB;IAC3B,IAAI,EAAE,YAAY;IAClB,GAAG,EAAE,WAAW;IAChB,OAAO,EAAE,eAAe;IACxB,SAAS,EAAE,iBAAiB;IAC5B,MAAM,EAAE,cAAc;IACtB,IAAI,EAAE,YAAY;IAClB,IAAI,EAAE,YAAY;IAClB,EAAE,EAAE,UAAU;IACd,MAAM,EAAE,cAAc;IACtB,IAAI,EAAE,YAAY;CACnB,CAAC;AAEF,MAAM,KAAK,GAAmC;IAC5C,OAAO,EAAE,oBAAoB,CAAC,eAAe,CAAC;IAC9C,MAAM,EAAE,oBAAoB,CAAC,cAAc,CAAC;IAC5C,OAAO,EAAE,oBAAoB,CAAC,eAAe,CAAC;IAC9C,OAAO,EAAE,oBAAoB,CAAC,eAAe,CAAC;IAC9C,OAAO,EAAE,oBAAoB,CAAC,eAAe,CAAC;IAC9C,KAAK,EAAE,oBAAoB,CAAC,aAAa,CAAC;IAC1C,QAAQ,EAAE,oBAAoB,CAAC,gBAAgB,CAAC;IAChD,QAAQ,EAAE,oBAAoB,CAAC,gBAAgB,CAAC;IAChD,MAAM,EAAE,oBAAoB,CAAC,cAAc,CAAC;IAC5C,IAAI,EAAE,oBAAoB,CAAC,YAAY,CAAC;IACxC,QAAQ,EAAE,oBAAoB,CAAC,gBAAgB,CAAC;IAChD,MAAM,EAAE,oBAAoB,CAAC,cAAc,CAAC;IAC5C,SAAS,EAAE,oBAAoB,CAAC,gBAAgB,CAAC;IACjD,IAAI,EAAE,oBAAoB,CAAC,YAAY,CAAC;IACxC,KAAK,EAAE,oBAAoB,CAAC,aAAa,CAAC;IAC1C,QAAQ,EAAE,oBAAoB,CAAC,gBAAgB,CAAC;IAChD,GAAG,EAAE,oBAAoB,CAAC,WAAW,CAAC;IACtC,KAAK,EAAE,oBAAoB,CAAC,aAAa,CAAC;IAC1C,MAAM,EAAE,oBAAoB,CAAC,cAAc,CAAC;IAC5C,OAAO,EAAE,oBAAoB,CAAC,eAAe,CAAC;IAC9C,kBAAkB,EAAE,oBAAoB,CAAC,0BAA0B,CAAC;IACpE,YAAY,EAAE,oBAAoB,CAAC,oBAAoB,CAAC;IACxD,EAAE,EAAE,oBAAoB,CAAC,UAAU,CAAC;IACpC,MAAM,EAAE,oBAAoB,CAAC,cAAc,CAAC;IAC5C,QAAQ,EAAE,oBAAoB,CAAC,gBAAgB,CAAC;IAChD,IAAI,EAAE,oBAAoB,CAAC,YAAY,CAAC;IACxC,UAAU,EAAE,oBAAoB,CAAC,kBAAkB,CAAC;IACpD,IAAI,EAAE,oBAAoB,CAAC,YAAY,CAAC;IACxC,KAAK,EAAE,oBAAoB,CAAC,aAAa,CAAC;IAC1C,MAAM,EAAE,oBAAoB,CAAC,cAAc,CAAC;IAC5C,OAAO,EAAE,oBAAoB,CAAC,cAAc,CAAC;IAC7C,IAAI,EAAE,oBAAoB,CAAC,YAAY,CAAC;IACxC,KAAK,EAAE,oBAAoB,CAAC,YAAY,CAAC;IACzC,OAAO,EAAE,oBAAoB,CAAC,eAAe,CAAC;IAC9C,QAAQ,EAAE,oBAAoB,CAAC,eAAe,CAAC;IAC/C,GAAG,EAAE,oBAAoB,CAAC,WAAW,CAAC;IACtC,IAAI,EAAE,oBAAoB,CAAC,WAAW,CAAC;IACvC,MAAM,EAAE,oBAAoB,CAAC,cAAc,CAAC;IAC5C,KAAK,EAAE,oBAAoB,CAAC,aAAa,CAAC;IAC1C,MAAM,EAAE,oBAAoB,CAAC,aAAa,CAAC;IAC3C,UAAU,EAAE,oBAAoB,CAAC,kBAAkB,CAAC;IACpD,WAAW,EAAE,oBAAoB,CAAC,kBAAkB,CAAC;IACrD,IAAI,EAAE,oBAAoB,CAAC,kBAAkB,CAAC;IAC9C,KAAK,EAAE,oBAAoB,CAAC,kBAAkB,CAAC;IAC/C,cAAc,EAAE,oBAAoB,CAAC,sBAAsB,CAAC;IAC5D,eAAe,EAAE,oBAAoB,CAAC,sBAAsB,CAAC;IAC7D,QAAQ,EAAE,oBAAoB,CAAC,sBAAsB,CAAC;IACtD,SAAS,EAAE,oBAAoB,CAAC,sBAAsB,CAAC;IACvD,GAAG,EAAE,oBAAoB,CAAC,sBAAsB,CAAC;IACjD,IAAI,EAAE,oBAAoB,CAAC,sBAAsB,CAAC;IAClD,QAAQ,EAAE,oB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package/dist/chris/files.js

@@ -56,113 +56,52 @@ async function file_write(filePath, bytes) {
     listCache_get().cache_invalidate(parent);
 }
 /**
- * A `/proc` job data path as the physical file behind it, when the node's
- * output folder is a link. Returns the input unchanged when it is not a
- * data path or resolves no further.
+ * Reads one ChRIS file's raw bytes where the store keeps it.
  *
- * @param projected - A path under a projection.
- * @returns The physical path, or the input.
- */
-async function projectedPath_physical(projected) {
-    try {
-        const link = /^(\/proc\/jobs\/feed_\d+\/[^/]+\/data)(\/.*)?$/.exec(projected);
-        if (link === null)
-            return projected;
-        const { vfsDispatcher } = await import('@fnndsc/salsa');
-        const target = await vfsDispatcher.linkTarget_resolve(link[1]);
-        if (!target.ok)
-            return projected;
-        const { logicalPath_resolve } = await import('@fnndsc/chili/utils');
-        const physical = await logicalPath_resolve(`${target.value}${link[2] ?? ''}`);
-        return physical.ok ? physical.value : projected;
-    }
-    catch {
-        return projected;
-    }
-}
-/**
- * Reads one ChRIS file's raw bytes through ChILI, resolved against the
- * session's working directory.
- *
- * Resolved, as its twin {@link file_write} is: a surface addresses a file
- * the way the session does, and the session's paths include the relative
- * ones and the `/proc` projections. Handing the raw path to ChILI meant a
- * volume produced by a run could not be read at the address the graph
- * itself gives for it — the node's own `data` — while the same bytes read
- * fine under `/home`. One file, two names, one of them refused.
+ * The path is resolved as every reader resolves it (`storePath_resolve`):
+ * against the working directory, through a `/proc` job's `data` link to its
+ * output, and through the store's links at any depth. One file has many
+ * names (its feed path, the node's own `data` in the graph, the folder a
+ * `pl-dircopy` link points at) and all of them read the same bytes.
  *
  * @param filePath - The file's path (absolute, cwd-relative, or projected).
  * @returns The file's bytes.
- * @throws {Error} When the path does not resolve to a readable file.
+ * @throws {FileReadRefusal} When the path does not lead to a readable file, with the kernel's reason.
  */
 async function file_read(filePath) {
-    const { path_resolve } = await import('../builtins/utils.js');
+    const { storePath_resolve } = await import('../builtins/utils.js');
     const { errorStack } = await import('@fnndsc/fond');
     const since = errorStack.checkpoint_mark();
-    const refusal = () => fileRefusal_name(filePath, errorStack.checkpoint_drain(since).map((note) => note.message));
-    const resolved = await path_resolve(filePath);
+    const stored = await storePath_resolve(filePath);
     const { vfsDispatcher } = await import('@fnndsc/salsa');
-    // A projection is read by the provider that owns it — `/proc/jobs/…/data`
-    // follows the node's own data link and delegates to the file behind it.
-    // ChILI's cat knows only CFS, so a path under a projection reached this
-    // route and 404'd: the volume a run had just produced could not be read
-    // at the address its own graph gives for it.
-    if (vfsDispatcher.path_isVirtual(resolved)) {
-        const projected = vfsOutcome_convertToResult(await vfsDispatcher.readBinary(resolved), 'readBinary', resolved);
-        if (projected.ok)
-            return projected.value;
-        // A node's data link can point at a folder that is ITSELF a link — a
-        // `pl-dircopy` of a PACS pull stores its DICOM under `/SERVICES/PACS`
-        // — and the provider hands back the logical name, which no file id
-        // answers to. Follow it the rest of the way rather than refusing a
-        // file the same graph just listed.
-        const physical = await projectedPath_physical(resolved);
-        if (physical !== resolved) {
-            const { files_catBinary: catLinked } = await import('@fnndsc/chili/commands/fs/cat.js');
-            const followed = await catLinked(physical);
-            if (followed.ok)
-                return followed.value;
-        }
-        throw refusal();
-    }
-    const { files_catBinary } = await import('@fnndsc/chili/commands/fs/cat.js');
-    const result = await files_catBinary(resolved);
-    if (!result.ok) {
-        throw refusal();
-    }
-    errorStack.checkpoint_drain(since);
-    return result.value;
+    const read = vfsOutcome_convertToResult(await vfsDispatcher.readBinary(stored), 'readBinary', stored);
+    const notes = errorStack.checkpoint_drain(since).map((note) => note.message);
+    if (!read.ok)
+        throw fileRefusal_name(filePath, notes);
+    return read.value;
 }
 /**
- * Opens one ChRIS file's bytes as a stream, resolved as {@link file_read}
+ * Opens one ChRIS file's bytes as a stream, at the path {@link file_read}
  * resolves, so a download is served as CUBE sends it and never held whole
- * in the daemon. A projection (`/proc/…/data`) is read whole, as before:
- * those are small virtual files or links the read already follows.
+ * in the daemon. A file a mount makes itself (a job's `log`) is small and
+ * read whole.
  *
  * @param filePath - The file's path (absolute, cwd-relative, or projected).
  * @returns The stream and its size when CUBE gave one.
  * @throws {FileReadRefusal} When the file cannot be opened, with the kernel's reason.
  */
 async function file_stream(filePath) {
-    const { path_resolve } = await import('../builtins/utils.js');
+    const { storePath_resolve } = await import('../builtins/utils.js');
     const { vfsDispatcher, fileContent_getBinaryStream } = await import('@fnndsc/salsa');
-    const resolved = await path_resolve(filePath);
-    // A node's `/proc/…/data` path streams the file behind its data link; any
-    // other projection is small and read whole.
-    let target = resolved;
-    if (vfsDispatcher.path_isVirtual(resolved)) {
-        target = await projectedPath_physical(resolved);
-        if (target === resolved) {
-            const bytes = await file_read(filePath);
-            const { Readable } = await import('node:stream');
-            return { stream: Readable.from(bytes), size: bytes.length };
-        }
+    const stored = await storePath_resolve(filePath);
+    if (vfsDispatcher.path_isVirtual(stored)) {
+        const bytes = await file_read(filePath);
+        const { Readable } = await import('node:stream');
+        return { stream: Readable.from(bytes), size: bytes.length };
     }
     const { errorStack } = await import('@fnndsc/fond');
     const since = errorStack.checkpoint_mark();
-    const { path_resolveChrisFs } = await import('@fnndsc/chili/utils/cli.js');
-    const physical = await path_resolveChrisFs(target, {});
-    const opened = await fileContent_getBinaryStream(physical);
+    const opened = await fileContent_getBinaryStream(stored);
     const notes = errorStack.checkpoint_drain(since).map((note) => note.message);
     if (!opened.ok)
         throw fileRefusal_name(filePath, notes);

package/dist/chris/files.js.map

@@ -1 +1 @@
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+{"version":3,"file":"files.js","sourceRoot":"","sources":["../../src/chris/files.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,OAAO,EAAE,0BAA0B,EAAE,MAAM,cAAc,CAAC;AAG1D,OAAO,EAAE,eAAe,EAAE,MAAM,wBAAwB,CAAC;AAEzD;;;;;;;;;;GAUG;AACH,MAAM,UAAU,gBAAgB,CAAC,QAAgB,EAAE,KAA4B;IAC7E,MAAM,IAAI,GAAW,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC;IACnD,MAAM,MAAM,GAAuB,KAAK,CAAC,GAAG,CAAC,CAAC,IAAY,EAAU,EAAE,CAAC,MAAM,CAAC,mCAAmC,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAS,EAAW,EAAE,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1L,IAAI,MAAM,KAAK,GAAG,IAAI,MAAM,KAAK,GAAG;QAAE,OAAO,IAAI,eAAe,CAAC,QAAQ,EAAE,GAAG,EAAE,iDAAiD,CAAC,CAAC;IACnI,IAAI,MAAM,KAAK,GAAG,IAAI,2BAA2B,CAAC,IAAI,CAAC,IAAI,CAAC;QAAE,OAAO,IAAI,eAAe,CAAC,QAAQ,EAAE,GAAG,EAAE,4BAA4B,CAAC,CAAC;IACtI,IAAI,MAAM,KAAK,SAAS,IAAI,MAAM,IAAI,GAAG;QAAE,OAAO,IAAI,eAAe,CAAC,QAAQ,EAAE,GAAG,EAAE,4BAA4B,MAAM,GAAG,CAAC,CAAC;IAC5H,2EAA2E;IAC3E,OAAO,IAAI,eAAe,CAAC,QAAQ,EAAE,GAAG,EAAE,IAAI,CAAC,OAAO,CAAC,qBAAqB,EAAE,EAAE,CAAC,CAAC,IAAI,EAAE,IAAI,mBAAmB,CAAC,CAAC;AACnH,CAAC;AAGD;;;;;;;;;GASG;AACH,KAAK,UAAU,UAAU,CAAC,QAAgB,EAAE,KAAa;IACvD,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,MAAM,CAAC,sBAAsB,CAAC,CAAC;IAC9D,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,MAAM,CAAC,eAAe,CAAC,CAAC;IACvD,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,MAAM,CAAC,eAAe,CAAC,CAAC;IACxD,MAAM,QAAQ,GAAW,MAAM,YAAY,CAAC,QAAQ,CAAC,CAAC;IACtD,MAAM,OAAO,GAAY,MAAM,YAAY,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;IAC7D,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,MAAM,IAAI,KAAK,CAAC,gBAAgB,QAAQ,EAAE,CAAC,CAAC;IAC9C,CAAC;IACD,uEAAuE;IACvE,sEAAsE;IACtE,wEAAwE;IACxE,sDAAsD;IACtD,MAAM,MAAM,GAAW,QAAQ,CAAC,OAAO,CAAC,UAAU,EAAE,EAAE,CAAC,IAAI,GAAG,CAAC;IAC/D,aAAa,EAAE,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAC;AAC3C,CAAC;AAED;;;;;;;;;;;;GAYG;AACH,KAAK,UAAU,SAAS,CAAC,QAAgB;IACvC,MAAM,EAAE,iBAAiB,EAAE,GAAG,MAAM,MAAM,CAAC,sBAAsB,CAAC,CAAC;IACnE,MAAM,EAAE,UAAU,EAAE,GAAG,MAAM,MAAM,CAAC,cAAc,CAAC,CAAC;IACpD,MAAM,KAAK,GAAW,UAAU,CAAC,eAAe,EAAE,CAAC;IACnD,MAAM,MAAM,GAAW,MAAM,iBAAiB,CAAC,QAAQ,CAAC,CAAC;IACzD,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,MAAM,CAAC,eAAe,CAAC,CAAC;IACxD,MAAM,IAAI,GAAmB,0BAA0B,CAAC,MAAM,aAAa,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,YAAY,EAAE,MAAM,CAAC,CAAC;IACtH,MAAM,KAAK,GAAa,UAAU,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,IAAyB,EAAU,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACpH,IAAI,CAAC,IAAI,CAAC,EAAE;QAAE,MAAM,gBAAgB,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;IACtD,OAAO,IAAI,CAAC,KAAK,CAAC;AACpB,CAAC;AAED;;;;;;;;;GASG;AACH,KAAK,UAAU,WAAW,CAAC,QAAgB;IACzC,MAAM,EAAE,iBAAiB,EAAE,GAAG,MAAM,MAAM,CAAC,sBAAsB,CAAC,CAAC;IACnE,MAAM,EAAE,aAAa,EAAE,2BAA2B,EAAE,GAAG,MAAM,MAAM,CAAC,eAAe,CAAC,CAAC;IACrF,MAAM,MAAM,GAAW,MAAM,iBAAiB,CAAC,QAAQ,CAAC,CAAC;IACzD,IAAI,aAAa,CAAC,cAAc,CAAC,MAAM,CAAC,EAAE,CAAC;QACzC,MAAM,KAAK,GAAW,MAAM,SAAS,CAAC,QAAQ,CAAC,CAAC;QAChD,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,MAAM,CAAC,aAAa,CAAC,CAAC;QACjD,OAAO,EAAE,MAAM,EAAE,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,IAAI,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC;IAC9D,CAAC;IACD,MAAM,EAAE,UAAU,EAAE,GAAG,MAAM,MAAM,CAAC,cAAc,CAAC,CAAC;IACpD,MAAM,KAAK,GAAW,UAAU,CAAC,eAAe,EAAE,CAAC;IACnD,MAAM,MAAM,GAAG,MAAM,2BAA2B,CAAC,MAAM,CAAC,CAAC;IACzD,MAAM,KAAK,GAAa,UAAU,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,IAAyB,EAAU,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;IACpH,IAAI,CAAC,MAAM,CAAC,EAAE;QAAE,MAAM,gBAAgB,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;IACxD,MAAM,KAAK,GAAG,MAAM,CAAC,KAA2C,CAAC;IACjE,yEAAyE;IACzE,2EAA2E;IAC3E,IAAI,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,EAAE,CAAC;QAClC,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,MAAM,CAAC,aAAa,CAAC,CAAC;QACjD,OAAO,EAAE,MAAM,EAAE,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,IAAI,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC;IAC1F,CAAC;IACD,OAAO,EAAE,MAAM,EAAE,KAAK,CAAC,MAA+B,EAAE,GAAG,CAAC,KAAK,CAAC,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC;AACtH,CAAC;AAED,iCAAiC;AACjC,MAAM,CAAC,MAAM,UAAU,GAAkC;IACvD,IAAI,EAAE,SAAS;IACf,KAAK,EAAE,UAAU;IACjB,MAAM,EAAE,WAAW;CACpB,CAAC"}

package/dist/chris/help.js

@@ -173,20 +173,6 @@ export const chrisHelp = {
             'upload ~/experiment/data /home/user/projects/',
         ],
     },
-    download: {
-        category: 'Files',
-        usage: 'download <chris_path_or_glob> <local_path> [-f|--force]',
-        description: 'Download a ChRIS file, directory, or CFS glob to the local filesystem with progress tracking',
-        options: [
-            '-f, --force   Overwrite existing local paths',
-            'Progress bar shows files, ETA, bytes transferred',
-        ],
-        examples: [
-            'download /home/user/data ./data',
-            'download /home/user/results/*.nii ./results/',
-            'download /feeds/feed_123 ./downloads -f',
-        ],
-    },
     connect: {
         category: 'Connection',
         usage: 'connect <username> <url> [password]',
@@ -991,56 +977,6 @@ export const chrisHelp = {
             'R=$(gather process pl-dcm2niix-v1.0.2 --title "sag nifti")',
         ],
     },
-    berth: {
-        category: 'Workflows',
-        usage: 'berth [anchor <path> [name] [--refresh] [--yes] | close [--infeed <anchor> | --newfeed] [--name <feed>] [--title <text>] [--force] | drop <name> | clear]',
-        summary: "The ChRIS paths downloaded into this session's berth, and the work returned: anchor, list, close, drop, clear",
-        description: "Anchor ChRIS paths in this session's berth: download each into the anchors folder, list them, return the outgoing folder to ChRIS as one node, drop one, or clear them all",
-        options: [
-            'SUBCOMMANDS:',
-            '  (none)                   List the anchors: name, ChRIS path, node or',
-            '                           none, files, size, when anchored; and when',
-            '                           the berth last closed',
-            '  anchor <path> [name]     Download a ChRIS path you can read into',
-            '                           <anchors>/<name>/, named by its last part',
-            '                           unless a name is given',
-            '    --refresh              Download an anchor that stands again',
-            '    --yes, -y              Answer yes to the question above 10 GB',
-            '  close                    Upload the outgoing folder, with berth.json,',
-            '                           to ~/berth/<uuid>/ and make it one node',
-            '                           (pl-dsdircopy): a child of the node every',
-            '                           anchor is under, or a new feed when none is',
-            '    --infeed <anchor>      A child of that anchor\'s node',
-            '    --newfeed              A new feed over every anchor',
-            '    --name <feed>          The new feed\'s name',
-            '    --title <text>         The node\'s title (berth work)',
-            '    --force, -f            Answer yes when your processes still run',
-            '  drop <name>              Remove one anchor; ChRIS still holds it',
-            '  clear                    Remove every anchor and empty the outgoing',
-            '                           folder; asks first when it holds files not',
-            '                           yet closed',
-            '',
-            'Under your own ~/feeds an anchor has a node, the plugin instance its',
-            'path runs through, which must be finishedSuccessfully; anywhere else',
-            '(uploads, PACS, /PUBLIC, /SHARED) it has none. Anchors of two nodes,',
-            'or of a node and of none, want --infeed or --newfeed to close. A close',
-            'removes nothing. help anchors says more.',
-            'On a host, not in a berth, berth says so and refuses the subcommands.',
-        ],
-        examples: [
-            'berth',
-            'berth anchor ~/feeds/feed_5/pl-dircopy_7/pl-fshack_41/data/sub-01',
-            'berth anchor ~/uploads/weights',
-            'berth anchor /PUBLIC/atlas/weights atlas-weights',
-            'berth anchor ~/uploads/weights --refresh',
-            'berth close',
-            'berth close --title "sub-01 segmentation"',
-            'berth close --infeed sub-01',
-            'berth close --newfeed --name "unet weights"',
-            'berth drop sub-01',
-            'berth clear',
-        ],
-    },
     group: {
         category: 'Resources',
         usage: 'groups <subcommand> [options]',

package/dist/chris/help.js.map

@@ -1 +1 @@
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package/dist/chris/kinds.d.ts

@@ -0,0 +1,9 @@
+import { type ArgumentKind } from '../core/argumentKinds.js';
+/**
+ * An anchor of this session's berth, by its name: `berth drop <name>`,
+ * `berth close --infeed <anchor>`. It completes from the berth's state; on a
+ * host, with no berth, it completes nothing.
+ */
+export declare const ANCHOR_KIND: ArgumentKind;
+/** Every argument kind the ChRIS backend registers. */
+export declare const chrisArgumentKinds: ReadonlyArray<ArgumentKind>;

package/dist/chris/kinds.js

@@ -0,0 +1,42 @@
+/**
+ * @file The argument kinds a ChRIS session adds to the core's, registered
+ * through the backend seam (`Backend.argumentKinds`): what its commands'
+ * arguments are beyond words, numbers and paths.
+ *
+ * Key components:
+ * - ANCHOR_KIND: an anchor of this session's berth, by name.
+ * - chrisArgumentKinds: every kind the ChRIS backend registers.
+ *
+ * Typical usage:
+ * ```ts
+ * const backend: Backend = { …, argumentKinds: chrisArgumentKinds };
+ * ```
+ *
+ * Dependencies: zod for the value schemas; the berth's state for an
+ * anchor's completion.
+ *
+ * @module
+ */
+import { z } from 'zod';
+import { candidates_filter } from '../core/argumentKinds.js';
+import { berthPlaces_read, berthState_read } from '../builtins/berth/berthState.js';
+/**
+ * An anchor of this session's berth, by its name: `berth drop <name>`,
+ * `berth close --infeed <anchor>`. It completes from the berth's state; on a
+ * host, with no berth, it completes nothing.
+ */
+export const ANCHOR_KIND = {
+    name: 'anchor',
+    summary: "the name of an anchor in this session's berth",
+    word_read: (word) => (word === '' ? { ok: false, reason: 'an empty word names no anchor' } : { ok: true, value: word }),
+    schema_make: () => z.string().min(1),
+    words_complete: async (partial) => {
+        const places = berthPlaces_read();
+        if (places === null)
+            return [];
+        return candidates_filter(berthState_read(places.anchors).anchors.map((anchor) => anchor.name), partial);
+    },
+};
+/** Every argument kind the ChRIS backend registers. */
+export const chrisArgumentKinds = [ANCHOR_KIND];
+//# sourceMappingURL=kinds.js.map

package/dist/chris/kinds.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"kinds.js","sourceRoot":"","sources":["../../src/chris/kinds.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AACH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EAAE,iBAAiB,EAAyC,MAAM,0BAA0B,CAAC;AACpG,OAAO,EAAE,gBAAgB,EAAE,eAAe,EAAsC,MAAM,iCAAiC,CAAC;AAExH;;;;GAIG;AACH,MAAM,CAAC,MAAM,WAAW,GAAiB;IACvC,IAAI,EAAE,QAAQ;IACd,OAAO,EAAE,+CAA+C;IACxD,SAAS,EAAE,CAAC,IAAY,EAAiB,EAAE,CAAC,CAAC,IAAI,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,+BAA+B,EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;IAC9I,WAAW,EAAE,GAAc,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC/C,cAAc,EAAE,KAAK,EAAE,OAAe,EAAqB,EAAE;QAC3D,MAAM,MAAM,GAAuB,gBAAgB,EAAE,CAAC;QACtD,IAAI,MAAM,KAAK,IAAI;YAAE,OAAO,EAAE,CAAC;QAC/B,OAAO,iBAAiB,CAAC,eAAe,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,MAAmB,EAAU,EAAE,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,OAAO,CAAC,CAAC;IAC/H,CAAC;CACF,CAAC;AAEF,uDAAuD;AACvD,MAAM,CAAC,MAAM,kBAAkB,GAAgC,CAAC,WAAW,CAAC,CAAC"}

package/dist/chris/promptContext.d.ts

@@ -43,6 +43,12 @@ export interface SessionPromptContext {
      * that left the boot gate has no other way to be heard.
      */
     warmupFailures?: WarmupFailure[];
+    /**
+     * Warm-up steps still running behind the prompt, by label. A daemon
+     * listens before its warm-up ends, so a surface that attaches early is
+     * told what the session is still warming.
+     */
+    warmupPending?: string[];
 }
 /**
  * Inputs the caller knows that the session state does not.

package/dist/chris/promptContext.js

@@ -12,7 +12,7 @@
  */
 import { jobsState_derive } from './jobsState.js';
 import { session } from '../session/index.js';
-import { warmupFailures_list } from '../core/warmupFailures.js';
+import { warmupFailures_list, warmupPending_list } from '../core/warmupFailures.js';
 import { context_getSingle } from '@fnndsc/salsa';
 import { pace_get, procCache_get } from '@fnndsc/cumin';
 /**
@@ -62,6 +62,7 @@ export async function sessionPromptContext_build(options = {}) {
     const roster = procCache_get().rosterSync_get();
     const sweeping = warmupRaw.active || lifecycle.state === 'reconciling' || lifecycle.state === 'failed';
     const warmupFailures = warmupFailures_list();
+    const warmupPending = warmupPending_list();
     const procWarmup = sweeping || feedLoad !== null || arrived.length > 0 || landed.length > 0 || roster !== null
         ? {
             loaded: warmupRaw.loaded,
@@ -93,6 +94,7 @@ export async function sessionPromptContext_build(options = {}) {
         lastCommandDurationMs: options.lastCommandDurationMs ?? 0,
         procWarmup,
         ...(warmupFailures.length > 0 ? { warmupFailures } : {}),
+        ...(warmupPending.length > 0 ? { warmupPending } : {}),
         procIndex,
     };
 }

package/dist/chris/promptContext.js.map

@@ -1 +1 @@
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