npm - @fnndsc/brasa - Versions diffs - 0.55.0 → 0.55.2 - Mend

@fnndsc/brasa 0.55.0 → 0.55.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (17) hide show

package/dist/buildinfo.json +1 -1
package/dist/builtins/fs/pull.js +32 -14
package/dist/builtins/fs/pull.js.map +1 -1
package/dist/builtins/res/dicom.js +12 -0
package/dist/builtins/res/dicom.js.map +1 -1
package/dist/builtins/res/image.js +21 -0
package/dist/builtins/res/image.js.map +1 -1
package/dist/chris/chrisCommands.js +4 -0
package/dist/chris/chrisCommands.js.map +1 -1
package/dist/core/jobletScope.d.ts +47 -0
package/dist/core/jobletScope.js +55 -0
package/dist/core/jobletScope.js.map +1 -0
package/dist/core/joblets.d.ts +4 -1
package/dist/core/joblets.js +6 -2
package/dist/core/joblets.js.map +1 -1
package/dist/notes.json +1 -1
package/package.json +2 -2

package/dist/buildinfo.json CHANGED Viewed

	@@ -1 +1 @@
1	- {"hash":"~~99790b~~"}
1	+ {"hash":"c7a3a2"}

package/dist/builtins/fs/pull.js CHANGED Viewed

@@ -23,6 +23,7 @@ import { builtin_cubepath } from '../net/cubepath.js';
 import { pullArgs_parse } from './pull.args.js';
 import { sink_get, sink_dataLine, sink_errLine } from '../../core/sink.js';
 import { repl_confirm } from '../../core/question.js';
+import { jobletCurrent_get } from '../../core/jobletScope.js';
 import { newFeed_cacheAdd, run_follow } from '../feedCreation.js';
 import { cohort_read, cohortFolders_note, cohortModel_wrap } from '../res/gather.store.js';
 import { ambient_publish } from '../../core/ambient.js';
@@ -88,26 +89,41 @@ async function cohortFolders_noteFromTasks(allTasks) {
     }
     return await cohortFolders_note(landed);
 }
+/** How long a pull with nobody to ask waits on a silent PACS, in seconds. */
+const UNASKED_WAIT_S = 60;
+/**
+ * Asks whether to keep waiting on a silent PACS.
+ *
+ * A silent PACS is the operator's call, not a timer's: CUBE has been
+ * checked already, and the question says what it found.
+ *
+ * @param waiting - The series still waiting on a first file.
+ * @param waitedS - How long the PACS has been silent, in seconds.
+ * @returns True to keep waiting.
+ */
+async function stillWaiting_ask(waiting, waitedS) {
+    const which = waiting.length === 1 ? waiting[0].label : `${waiting.length} series`;
+    try {
+        return await repl_confirm(`No files from the PACS yet for ${which} after ${waitedS}s, and none in CUBE. Keep waiting? (y/n)`);
+    }
+    catch {
+        // Nobody to ask (a script, a pipe): wait the longer window, then stop.
+        return waitedS < UNASKED_WAIT_S;
+    }
+}
 /**
  * Engine progress events rendered onto this surface's structured sink, plus
  * the retry-round banner line.
  *
+ * @param detached - Whether the pull runs in the background (a joblet). A
+ *   question asked there waits for an `fg` nobody knows to type while every
+ *   silent series goes on reading as in flight, so a detached pull asks
+ *   nothing: the engine waits its long window and ends the silent series.
  * @returns Event callbacks for the retrieve engine.
  */
-function pullEvents_make() {
+function pullEvents_make(detached) {
     return {
-        // A silent PACS is the operator's call, not a timer's: CUBE has been
-        // checked already, and the question says what it found.
-        stillWaiting: async (waiting, waitedS) => {
-            const which = waiting.length === 1 ? waiting[0].label : `${waiting.length} series`;
-            try {
-                return await repl_confirm(`No files from the PACS yet for ${which} after ${waitedS}s, and none in CUBE. Keep waiting? (y/n)`);
-            }
-            catch {
-                // Nobody to ask (a script, a pipe): wait the longer window, then stop.
-                return waitedS < 60;
-            }
-        },
+        ...(detached ? {} : { stillWaiting: stillWaiting_ask }),
         task: (task, status, phase) => pullProgress_emit(task, status, phase),
         retryRound: (attempt, retryMax, count) => sink_dataLine(chalk.yellow(`\nRetry ${attempt}/${retryMax} for ${count} unconfirmed series...`)),
         // Said out loud: a silent reconnection during a long pull is
@@ -233,6 +249,8 @@ function pullSummary_print(allTasks, totalFiringErrors) {
         }
         for (const u of unconfirmed) {
             sink_dataLine(chalk.gray(`  ? ${u.label} [WATCH ENDED — may still be arriving; check with: pacs status]`));
+            if (u.reason !== undefined)
+                sink_dataLine(chalk.gray(`      ${u.reason}`));
         }
         if (unconfirmed.length > 0) {
             sink_dataLine(chalk.gray(`  The retrieve watch ended before ${unconfirmed.length} series finished. ` +
@@ -395,7 +413,7 @@ export async function builtin_pull(args) {
         }
         return envelope_ok('');
     }
-    const events = pullEvents_make();
+    const events = pullEvents_make(jobletCurrent_get() !== null);
     let totalFiringErrors = toFetch.length > 0
         ? await retrieve_fireAndWatch(toFetch, pacsserver, client, events)
         : 0;

package/dist/builtins/fs/pull.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/builtins/res/dicom.js CHANGED Viewed

@@ -19,6 +19,7 @@
  * @module
  */
 import chalk from 'chalk';
+import { commandCancellation_enable, commandCancellation_signalGet } from '../../core/cancellation.js';
 import { context_getSingle, dicomSeries_summarize, dicomFolder_list, dicomHeader_get, dicomFiles_sample, dicomTags_summarize, } from '@fnndsc/salsa';
 import { DICOM_MODEL_KINDS, DICOM_TAG_GROUPS, envelope_ok, envelope_error } from '@fnndsc/menu';
 import { commandArgs_process, path_resolve } from '../utils.js';
@@ -110,9 +111,20 @@ async function dcmSeries_handle(args) {
     const target = parsed._[0];
     if (target === undefined)
         return usage_error('dcm series: a folder is required');
+    // A stop is honoured between the reads; one already on its way to CUBE
+    // runs to its answer, which is then dropped.
+    commandCancellation_enable();
+    const signal = commandCancellation_signalGet();
+    // Read afresh at each step: the signal changes while a read is awaited.
+    const stop_isAsked = () => signal?.aborted === true;
+    const stopped = () => envelope_error('', undefined, 'dcm series: stopped\n');
     const folder = await path_physical(await path_resolve(target));
+    if (stop_isAsked())
+        return stopped();
     const annotationRoot = await annotationRoot_get();
     const summary = await dicomSeries_summarize(folder, annotationRoot !== undefined ? { annotationRoot } : {});
+    if (stop_isAsked())
+        return stopped();
     if (!summary.ok) {
         exitCode_set(1);
         return envelope_error('', undefined, `${chalk.red(`dcm series: ${folder}: not a readable DICOM folder`)}\n`);

package/dist/builtins/res/dicom.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/builtins/res/image.js CHANGED Viewed

@@ -15,6 +15,10 @@
  * volume file; anything else is refused by name. `--force` rides through the
  * volume-size guard a graphical surface would otherwise hold at.
  *
+ * A stop is honoured between the reads: after the path resolves, after the
+ * series' listing and header, and before the thumbnail's slice. A read
+ * already on its way to CUBE runs to its answer, which is then dropped.
+ *
  * @module
  */
 import { context_getSingle, dicomSeries_summarize, dicomSlice_gray } from '@fnndsc/salsa';
@@ -26,10 +30,19 @@ import { surface_get } from '../../core/surface.js';
 import { series_render } from './dicom.js';
 import { thumbnail_render } from './thumbnail.js';
 import { exitCode_set } from '../../core/handlerRun.js';
+import { commandCancellation_enable, commandCancellation_signalGet } from '../../core/cancellation.js';
 /** Path endings a volume renderer answers to. */
 const VOLUME_PATTERN = /\.(nii|nii\.gz|mgz|mgh)$/i;
 /** One DICOM file; its folder is the series. */
 const DICOM_FILE_PATTERN = /\.dcm$/i;
+/**
+ * The answer of an `image` that was stopped before it had one.
+ *
+ * @returns An error envelope saying so, with no intent for a surface to draw.
+ */
+function stopped_answer() {
+    return envelope_error('', undefined, 'image: stopped\n');
+}
 /**
  * Handles `image [--force] <path>`.
  *
@@ -44,7 +57,13 @@ export async function builtin_image(args) {
     if (target === undefined)
         return envelope_ok(help_render('image'));
     const force = parsed.force === true;
+    commandCancellation_enable();
+    const signal = commandCancellation_signalGet();
+    // Read afresh at each step: the signal changes while a read is awaited.
+    const stop_isAsked = () => signal?.aborted === true;
     const resolved = await path_resolve(target);
+    if (stop_isAsked())
+        return stopped_answer();
     // A volume file: the intent names it; a text surface has no volume to draw.
     if (VOLUME_PATTERN.test(resolved)) {
         const name = resolved.split('/').pop() ?? resolved;
@@ -55,6 +74,8 @@ export async function builtin_image(args) {
     const folder = DICOM_FILE_PATTERN.test(resolved) ? resolved.slice(0, resolved.lastIndexOf('/')) : resolved;
     const annotationRoot = await annotationRoot_get();
     const summary = await dicomSeries_summarize(folder, annotationRoot !== undefined ? { annotationRoot } : {});
+    if (stop_isAsked())
+        return stopped_answer();
     if (!summary.ok) {
         exitCode_set(1);
         return envelope_error('', undefined, `${chalk.red(`image: ${target}: not a readable DICOM series, study, or volume`)}\n`);

package/dist/builtins/res/image.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/chris/chrisCommands.js CHANGED Viewed

@@ -166,6 +166,10 @@ const holds = {
     ...Object.fromEntries([
         'du', 'feeds', 'file', 'getfacl', 'getfattr', 'groups', 'id', 'md5sum', 'motd', 'pacsservers',
         'pipelines', 'plugininstances', 'plugins', 'sha256sum', 'strings', 'tree', 'whatif', 'whereami', 'whoami', 'xxd',
+        // Reading a series' listing and header, or a file's tags, changes nothing
+        // of the session: `image` answers with an intent a surface draws, `dcm`
+        // with a model.
+        'dcm', 'image',
     ].map((name) => [name, []])),
     gather: ['cohort'],
 };

package/dist/chris/chrisCommands.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/core/jobletScope.d.ts ADDED Viewed

@@ -0,0 +1,47 @@
+/**
+ * @file The joblet a line runs in, as a fact the line can read.
+ *
+ * A line ended with `&` runs as a joblet (`./joblets.js`): nobody is at its
+ * console, and a question it asks waits until someone types `fg %N`. A verb
+ * that can decide for itself what a person would otherwise be asked (how
+ * long to wait on a silent PACS) reads here whether it runs in a joblet,
+ * and does not ask when it does. A verb that cannot go on without an answer
+ * (a password, a removal to confirm) asks as it would in front, and waits.
+ *
+ * Key components:
+ * - jobletScope_run: runs work as a joblet's.
+ * - jobletCurrent_get: the joblet the calling code runs in, or null.
+ *
+ * Typical usage:
+ * ```ts
+ * const detached: boolean = jobletCurrent_get() !== null;
+ * ```
+ *
+ * Dependencies: Node.js `async_hooks` only.
+ *
+ * @module
+ */
+/**
+ * Runs work as a joblet's: everything it awaits reads that joblet's number.
+ *
+ * @param number - The joblet's number, as `/proc/joblets/<N>` has it.
+ * @param operation - The work.
+ * @returns What the work returns.
+ *
+ * @example
+ * ```ts
+ * await jobletScope_run(1, async (): Promise<number | null> => jobletCurrent_get()); // 1
+ * ```
+ */
+export declare function jobletScope_run<T>(number: number, operation: () => Promise<T>): Promise<T>;
+/**
+ * The joblet the calling code runs in.
+ *
+ * @returns Its number, or null for a line in front.
+ *
+ * @example
+ * ```ts
+ * jobletCurrent_get(); // null at a console's own line
+ * ```
+ */
+export declare function jobletCurrent_get(): number | null;

package/dist/core/jobletScope.js ADDED Viewed

@@ -0,0 +1,55 @@
+/**
+ * @file The joblet a line runs in, as a fact the line can read.
+ *
+ * A line ended with `&` runs as a joblet (`./joblets.js`): nobody is at its
+ * console, and a question it asks waits until someone types `fg %N`. A verb
+ * that can decide for itself what a person would otherwise be asked (how
+ * long to wait on a silent PACS) reads here whether it runs in a joblet,
+ * and does not ask when it does. A verb that cannot go on without an answer
+ * (a password, a removal to confirm) asks as it would in front, and waits.
+ *
+ * Key components:
+ * - jobletScope_run: runs work as a joblet's.
+ * - jobletCurrent_get: the joblet the calling code runs in, or null.
+ *
+ * Typical usage:
+ * ```ts
+ * const detached: boolean = jobletCurrent_get() !== null;
+ * ```
+ *
+ * Dependencies: Node.js `async_hooks` only.
+ *
+ * @module
+ */
+import { AsyncLocalStorage } from 'node:async_hooks';
+/** The number of the joblet on this async path. */
+const jobletScope = new AsyncLocalStorage();
+/**
+ * Runs work as a joblet's: everything it awaits reads that joblet's number.
+ *
+ * @param number - The joblet's number, as `/proc/joblets/<N>` has it.
+ * @param operation - The work.
+ * @returns What the work returns.
+ *
+ * @example
+ * ```ts
+ * await jobletScope_run(1, async (): Promise<number | null> => jobletCurrent_get()); // 1
+ * ```
+ */
+export async function jobletScope_run(number, operation) {
+    return await jobletScope.run(number, operation);
+}
+/**
+ * The joblet the calling code runs in.
+ *
+ * @returns Its number, or null for a line in front.
+ *
+ * @example
+ * ```ts
+ * jobletCurrent_get(); // null at a console's own line
+ * ```
+ */
+export function jobletCurrent_get() {
+    return jobletScope.getStore() ?? null;
+}
+//# sourceMappingURL=jobletScope.js.map

package/dist/core/jobletScope.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"jobletScope.js","sourceRoot":"","sources":["../../src/core/jobletScope.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;GAsBG;AAEH,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAC;AAErD,mDAAmD;AACnD,MAAM,WAAW,GAA8B,IAAI,iBAAiB,EAAU,CAAC;AAE/E;;;;;;;;;;;GAWG;AACH,MAAM,CAAC,KAAK,UAAU,eAAe,CAAI,MAAc,EAAE,SAA2B;IAClF,OAAO,MAAM,WAAW,CAAC,GAAG,CAAC,MAAM,EAAE,SAAS,CAAC,CAAC;AAClD,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,UAAU,iBAAiB;IAC/B,OAAO,WAAW,CAAC,QAAQ,EAAE,IAAI,IAAI,CAAC;AACxC,CAAC"}

package/dist/core/joblets.d.ts CHANGED Viewed

@@ -16,7 +16,10 @@
  * A joblet that needs an answer pauses and says so (`[1]+ Waiting for an
  * answer: … · fg %1 to answer`), as a POSIX background job that reads the
  * terminal is stopped: a question asked out of the blue in a console would
- * be answered by accident. `fg %1`, from any surface, asks it there.
+ * be answered by accident. `fg %1`, from any surface, asks it there. A verb
+ * that can decide without the answer reads that it runs in a joblet
+ * (`./jobletScope.js`) and does not ask: a pull on a silent PACS waits its
+ * long window and ends, where in front it would ask whether to keep waiting.
  *
  * Joblets belong to the session: they outlive the surface that started them,
  * and a daemon restart ends them, their logs kept ("ended by restart").

package/dist/core/joblets.js CHANGED Viewed

@@ -16,7 +16,10 @@
  * A joblet that needs an answer pauses and says so (`[1]+ Waiting for an
  * answer: … · fg %1 to answer`), as a POSIX background job that reads the
  * terminal is stopped: a question asked out of the blue in a console would
- * be answered by accident. `fg %1`, from any surface, asks it there.
+ * be answered by accident. `fg %1`, from any surface, asks it there. A verb
+ * that can decide without the answer reads that it runs in a joblet
+ * (`./jobletScope.js`) and does not ask: a pull on a silent PACS waits its
+ * long window and ends, where in front it would ask whether to keep waiting.
  *
  * Joblets belong to the session: they outlive the surface that started them,
  * and a daemon restart ends them, their logs kept ("ended by restart").
@@ -29,6 +32,7 @@ import { envelope_error, envelope_ok, taskState_isOver } from '@fnndsc/menu';
 import { ambient_publish } from './ambient.js';
 import { commandCancellation_abort } from './cancellation.js';
 import { lineHolds_get } from './holds.js';
+import { jobletScope_run } from './jobletScope.js';
 import { lineOrigin_get } from './lineOrigin.js';
 import { JobRefusal, runner_get } from './runner.js';
 import { ansi_strip, sinkScope_run } from './sink.js';
@@ -228,7 +232,7 @@ async function joblet_run(joblet, context, cwd) {
     await hold_take();
     let envelopes;
     try {
-        envelopes = await sinkScope_run(sink, () => surfaceScope_run(standIn, () => variableScope_fork(() => cwdScope_run(() => line_execute(joblet.line, { origin: `joblet:${joblet.number}`, id: key, ended: (code) => { exit = code; } }), cwd))));
+        envelopes = await jobletScope_run(joblet.number, () => sinkScope_run(sink, () => surfaceScope_run(standIn, () => variableScope_fork(() => cwdScope_run(() => line_execute(joblet.line, { origin: `joblet:${joblet.number}`, id: key, ended: (code) => { exit = code; } }), cwd)))));
     }
     finally {
         hold_give();

package/dist/core/joblets.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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