@fnndsc/brasa 0.35.1 → 0.36.0

package/dist/chris/help.js

@@ -19,14 +19,27 @@ export const RESOURCE_LIST_OPTIONS = [
     '  --csv             CSV output',
 ];
 /** The help for each ChRIS command, by name. */
+/** The pronouns the ChRIS session answers, for `help pronouns`. */
+export const CHRIS_PRONOUN_LINES = [
+    '  ${gather}        every gathered member, as operands (where it was gathered FROM)',
+    '  ${gather.place}  the same members, where they LANDED in CUBE',
+    '  ${gather.first}  ${gather.last}  ${gather.3}  ${gather.size}  ${gather.name}',
+    '  ${gather.first.place}  one member, where it landed (pull takes the address, image takes the place)',
+    '  ${feed}          the feed this session most recently worked in',
+    '  ${run}           the run it most recently scheduled',
+    '  ${run.place}     where that run writes — what the next act in a chain takes',
+    '  ${query}         where its most recent PACS answer lives',
+];
 export const chrisHelp = {
     user: {
+        category: 'Administration',
         usage: 'user <add|inspect|disable|enable|remove> <username>',
         description: 'Manage CUBE-local accounts; federated identities remain externally managed',
         options: ['Use `sudo user …` for lifecycle operations.', 'add prompts for email and a hidden password confirmation.'],
         examples: ['sudo user add jack.bivowac', 'sudo user disable jack.bivowac', 'sudo user remove jack.bivowac'],
     },
     netstat: {
+        category: 'Connection',
         usage: 'netstat [-n <count>] [-r]',
         description: 'What the session has asked of CUBE: requests since the session (or the last reset), by endpoint family with the time spent, and the last few timed',
         options: [
@@ -40,6 +53,7 @@ export const chrisHelp = {
         ],
     },
     edit: {
+        category: 'File Operations',
         usage: 'edit <file>',
         description: 'Edit a ChRIS file in $EDITOR — fetches, opens, saves back on write',
         options: [
@@ -55,6 +69,7 @@ export const chrisHelp = {
         ],
     },
     setfacl: {
+        category: 'Sharing & Tags',
         usage: 'setfacl -m u:<user>:r|g:<group>:r|o::r|o::- <path>... | setfacl -x u:<user>|g:<group> <path>...',
         summary: 'Share a feed with a user, a group or everyone, or stop sharing it',
         description: 'A feed\'s access list, as POSIX ACL entries. -m u:<user>:r shares it with a user, -m g:<group>:r '
@@ -78,6 +93,7 @@ export const chrisHelp = {
         ],
     },
     getfacl: {
+        category: 'Sharing & Tags',
         usage: 'getfacl <path>...',
         summary: 'Show who can read a feed: users, groups, and whether it is public',
         description: 'Show who can read a feed, in the familiar block: a # file: line, the owner\'s user:: entry, '
@@ -88,6 +104,7 @@ export const chrisHelp = {
         ],
     },
     chmod: {
+        category: 'Sharing & Tags',
         usage: 'chmod o+r|o-r <feed>...',
         summary: 'Make a feed public, or private again',
         description: 'The other entry of a feed\'s access list spelled as a mode: o+r makes it public, o-r private, '
@@ -98,6 +115,7 @@ export const chrisHelp = {
         ],
     },
     setfattr: {
+        category: 'Sharing & Tags',
         usage: 'setfattr -n tag -v <value> <path>... | setfattr -x tag [-v <value>] <path>...',
         summary: 'Hang a tag on a feed, or take it off',
         description: 'A feed\'s tags are the values of one extended attribute, tag (also user.tag): CUBE\'s '
@@ -118,6 +136,7 @@ export const chrisHelp = {
         ],
     },
     getfattr: {
+        category: 'Sharing & Tags',
         usage: 'getfattr [-n tag] <path>...',
         summary: 'Show the tags a feed wears',
         description: 'Show a feed\'s tags in getfattr\'s dump shape: a # file: line, then one tag="…" line per tag.',
@@ -127,6 +146,7 @@ export const chrisHelp = {
         ],
     },
     config: {
+        category: 'File Operations',
         usage: 'config write <cfs-path> <base64-content>',
         description: 'Write a small configuration document into the user\'s CUBE home (the durable layer: argus desktops, surface preferences). Reads travel the ordinary cat. Documents are notes, not datasets: 256KB limit.',
         options: [],
@@ -136,6 +156,7 @@ export const chrisHelp = {
         ],
     },
     upload: {
+        category: 'File Operations',
         usage: 'upload <local_path_or_glob> <chris_path>',
         description: 'Upload local files, directories, or glob matches to ChRIS with progress tracking',
         options: [
@@ -153,6 +174,7 @@ export const chrisHelp = {
         ],
     },
     download: {
+        category: 'File Operations',
         usage: 'download <chris_path_or_glob> <local_path> [-f|--force]',
         description: 'Download a ChRIS file, directory, or CFS glob to the local filesystem with progress tracking',
         options: [
@@ -166,6 +188,7 @@ export const chrisHelp = {
         ],
     },
     connect: {
+        category: 'Connection',
         usage: 'connect <username> <url> [password]',
         description: 'Connect to ChRIS server',
         examples: [
@@ -174,11 +197,13 @@ export const chrisHelp = {
         ],
     },
     logout: {
+        category: 'Connection',
         usage: 'logout',
         description: 'Disconnect from ChRIS server',
         examples: ['logout'],
     },
     plugin: {
+        category: 'Single Resource',
         usage: 'plugin <subcommand> [options]',
         description: 'Work with a single ChRIS plugin - run, search, view documentation',
         options: [
@@ -238,6 +263,7 @@ export const chrisHelp = {
         ],
     },
     plugins: {
+        category: 'Resource Collections',
         usage: 'plugins <subcommand> [options]',
         description: 'Manage collections of ChRIS plugins - list, add, delete, query',
         options: [
@@ -301,6 +327,7 @@ export const chrisHelp = {
         ],
     },
     feed: {
+        category: 'Single Resource',
         usage: 'feed <subcommand> [options]',
         description: 'Work with a single ChRIS feed - create, annotate, comment',
         options: [
@@ -339,6 +366,7 @@ export const chrisHelp = {
         ],
     },
     feeds: {
+        category: 'Resource Collections',
         usage: 'feeds <subcommand> [options]',
         description: 'Manage collections of ChRIS feeds - list, delete, share, query',
         options: [
@@ -365,6 +393,7 @@ export const chrisHelp = {
         ],
     },
     files: {
+        category: 'Resource Collections',
         usage: 'files <subcommand> [path] [options]',
         description: 'Manage ChRIS file resources',
         options: [...RESOURCE_LIST_OPTIONS],
@@ -376,18 +405,21 @@ export const chrisHelp = {
         ],
     },
     links: {
+        category: 'Resource Collections',
         usage: 'links <subcommand> [path] [options]',
         description: 'Manage ChRIS link resources',
         options: [...RESOURCE_LIST_OPTIONS],
         examples: ['links list', 'links search', 'links inspect'],
     },
     dirs: {
+        category: 'Resource Collections',
         usage: 'dirs <subcommand> [path] [options]',
         description: 'Manage ChRIS directory resources',
         options: [...RESOURCE_LIST_OPTIONS],
         examples: ['dirs list', 'dirs search', 'dirs inspect'],
     },
     pipeline: {
+        category: 'Single Resource',
         usage: 'pipeline <subcommand> [args]',
         description: 'Manage and execute ChRIS pipelines (registered DAG workflows)',
         options: [
@@ -448,6 +480,7 @@ export const chrisHelp = {
         ],
     },
     pacs: {
+        category: 'PACS',
         usage: 'pacs <subcommand> [args]',
         description: 'PACS subsystem — server context, query, and series retrieval',
         options: [
@@ -554,6 +587,7 @@ export const chrisHelp = {
         ],
     },
     pacsservers: {
+        category: 'PACS',
         usage: 'pacsservers <subcommand> [options]',
         description: 'List or inspect available PACS servers (context-aware)',
         examples: [
@@ -563,6 +597,7 @@ export const chrisHelp = {
         ],
     },
     pacsqueries: {
+        category: 'PACS',
         usage: 'pacsqueries <subcommand> [options]',
         description: 'Create or list PACS queries (uses current pacsserver context unless overridden)',
         options: [
@@ -578,6 +613,7 @@ export const chrisHelp = {
         ],
     },
     pacsretrieve: {
+        category: 'PACS',
         usage: 'pacsretrieve <subcommand> [options]',
         description: 'Pull or inspect DICOM retrieves for PACS queries',
         examples: [
@@ -587,16 +623,19 @@ export const chrisHelp = {
         ],
     },
     context: {
+        category: 'Connection',
         usage: 'context',
         description: 'Display current ChRIS context information',
         examples: ['context'],
     },
     whoami: {
+        category: 'Connection',
         usage: 'whoami',
         description: 'Print the currently authenticated ChRIS username',
         examples: ['whoami'],
     },
     id: {
+        category: 'Connection',
         usage: 'id',
         description: 'Print the current CUBE user as a Unix-style UID, projected primary GID, and complete list of CUBE group memberships.',
         examples: ['id'],
@@ -615,6 +654,7 @@ export const chrisHelp = {
         examples: ['chrisfetch', 'chrisfetch | lolcat'],
     },
     file: {
+        category: 'File Operations',
         usage: 'file <path>...',
         summary: 'What a file is, by its first bytes',
         description: 'Reads a CFS file\'s head and names it by its magic: DICOM, NIfTI, gzip, PNG, JPEG, PDF, ZIP, JSON, text and more, with its size.',
@@ -647,17 +687,20 @@ export const chrisHelp = {
         examples: ['md5sum image.nii.gz'],
     },
     motd: {
+        category: 'Games and utilities',
         usage: 'motd [surface]',
         summary: 'The greeting a session gives on arrival',
         description: 'Says who you are, how many feeds you hold, how many jobs have run and what share of them failed, and what is running now — from the session\'s own index, at no cost. While the index is still warming it says what it holds so far. A surface may name itself (motd ARGUS) and the greeting says where you arrived. Ends with a short fortune.',
         examples: ['motd', 'motd ARGUS'],
     },
     whereami: {
+        category: 'Connection',
         usage: 'whereami',
         description: 'Print the current CUBE URL',
         examples: ['whereami'],
     },
     proc: {
+        category: 'Monitoring',
         usage: 'proc <jobs|stat|feeds|refresh|retry|find|here|watch|unwatch> [args]',
         summary: 'Job history inspector — navigate, query and monitor ChRIS pipeline execution via /proc/jobs',
         description: '/proc/jobs is a job history inspector for every computation visible to the current ChRIS identity. Each plugin instance is a discrete job with a parent, zero or more children, a status, parameters, and a log. Jobs are grouped into feeds (pipeline runs), and the parent-child relationships form a DAG: the execution tree of a full computation. /proc/jobs exposes this as a navigable filesystem. The daemon restores an identity-scoped local topology checkpoint, validates feed visibility with CUBE, and reconciles all plugin instances in the background. Restored queries remain usable while syncing; a cold cache still guards global queries until complete. CUBE remains authoritative.',
@@ -674,6 +717,8 @@ export const chrisHelp = {
             'stat                                   Show cache summary',
             'stat <feed_id>                         Show raw counters + topology state for one feed',
             'feeds <query> [--fresh] [--force]      Find feeds by title, feed_N name or id; an id the roster lacks is asked of CUBE; --fresh walks the whole feed index now; --force waits for warm-up',
+            'feeds --new                            Feeds shared with you since your last visit, not yet opened (NEW)',
+            'seen <feed ...> | all                  Take the NEW mark off feeds you have looked at',
             'universe                               Every feed the index holds as it landed: size, status, pipeline shape; honest while warming',
             'layout <name>                          Where a surface last laid the universe out under a layout, as the session keeps it',
             'layout put <name> <places>             Keep a layout: node ids to [x, y, z], as JSON (surfaces put what they settle)',
@@ -698,6 +743,8 @@ export const chrisHelp = {
             'proc stat 899',
             'proc feeds failed',
             'proc feeds --fresh',
+            'proc feeds --new',
+            'proc seen all',
             'proc universe',
             'proc refresh',
             'proc retry',
@@ -711,6 +758,7 @@ export const chrisHelp = {
         ],
     },
     physicalmode: {
+        category: 'Shell Settings',
         usage: 'physicalmode [on|off]',
         description: 'Toggle or display physical filesystem mode',
         options: [
@@ -724,6 +772,7 @@ export const chrisHelp = {
         ],
     },
     parametersofplugin: {
+        category: 'Resource Collections',
         usage: 'parametersofplugin <plugin_name>',
         description: 'Display parameters for a specific plugin',
         examples: [
@@ -732,6 +781,7 @@ export const chrisHelp = {
         ],
     },
     tree: {
+        category: 'Navigation',
         usage: 'tree [options] [path]',
         description: 'Display directory tree structure',
         options: [
@@ -750,6 +800,7 @@ export const chrisHelp = {
         ],
     },
     du: {
+        category: 'Navigation',
         usage: 'du [options] [path]',
         description: 'Display disk usage statistics (mimics Linux du)',
         options: [
@@ -771,6 +822,7 @@ export const chrisHelp = {
         ],
     },
     store: {
+        category: 'Resource Collections',
         usage: 'store <subcommand> [options]',
         description: 'Browse, search, and install plugins from ChRIS peer store',
         options: [
@@ -804,6 +856,7 @@ export const chrisHelp = {
         ],
     },
     compute: {
+        category: 'Resource Collections',
         usage: 'compute <subcommand> [options]',
         description: 'Manage ChRIS compute resources',
         options: [
@@ -817,6 +870,7 @@ export const chrisHelp = {
         ],
     },
     tag: {
+        category: 'Single Resource',
         usage: 'tags <subcommand> [options]',
         description: 'Manage ChRIS tags',
         options: [
@@ -830,6 +884,7 @@ export const chrisHelp = {
         examples: ['tags list', 'tags search brain', 'tags inspect', 'tag create neuro', 'tag delete 5'],
     },
     tags: {
+        category: 'Resource Collections',
         usage: 'tags <subcommand> [options]',
         description: 'Manage ChRIS tags',
         options: [
@@ -843,6 +898,7 @@ export const chrisHelp = {
         examples: ['tags list', 'tags search brain', 'tags inspect', 'tag create neuro', 'tag delete 5'],
     },
     record: {
+        category: 'Workflows & Cohorts',
         usage: 'record <start <manifest>|stop|status>',
         description: 'Write what this session does down as a manifest',
         options: [
@@ -865,6 +921,7 @@ export const chrisHelp = {
         ],
     },
     play: {
+        category: 'Workflows & Cohorts',
         usage: 'play <manifest> [--param NAME=value]... [--pace <duration>] [--dry-run]',
         description: "Run a workflow manifest: the lines an operator could have typed",
         options: [
@@ -881,16 +938,7 @@ export const chrisHelp = {
             '  @param        LABEL = draft  one with a default',
             '  <any kernel line>',
             '',
-            'PRONOUNS a line may use:',
-            '  ${gather}        every gathered member, as operands (where it was gathered FROM)',
-            '  ${gather.place}  the same members, where they LANDED in CUBE',
-            '  ${gather.first}  ${gather.last}  ${gather.3}  ${gather.size}  ${gather.name}',
-            '  ${gather.first.place}  one member, where it landed (pull takes the address, image takes the place)',
-            '  ${feed}          the feed this session most recently worked in',
-            '  ${run}           the run it most recently scheduled',
-            '  ${run.place}     where that run writes — what the next act in a chain takes',
-            '  ${query}         where its most recent PACS answer lives',
-            '  ${cwd}           where the session is standing',
+            'PRONOUNS a line may use (${feed}, ${run}, ${gather}, ${query}, ${cwd} …): see help pronouns',
         ],
         examples: [
             'play ~/flows/sag-cohort.mise --param MRN=1234567',
@@ -899,6 +947,7 @@ export const chrisHelp = {
         ],
     },
     expect: {
+        category: 'Workflows & Cohorts',
         usage: 'expect <gather|feed|run|path> [<target>] <property> [<predicate> <value>] [--within <duration>]',
         description: 'State a claim about the session, and refuse when it does not hold',
         options: [
@@ -926,6 +975,7 @@ export const chrisHelp = {
         ],
     },
     gather: {
+        category: 'Workflows & Cohorts',
         usage: 'gather <subcommand> [path...]',
         description: "Hold the set of things this session is working on",
         options: [
@@ -933,6 +983,10 @@ export const chrisHelp = {
             '  list                     Show the cohort (the default)',
             '  add <path...>            Take series, directories or files into it',
             '  remove <path|index...>   Drop members, by path or by listed index',
+            '',
+            'add and remove take paths, handles (@SER3, @SER1-4), ${listing}, or a',
+            'listing piped in with no operands: query … | gather add. With none of',
+            'these they refuse rather than guess.',
             '  clear                    Empty it, name and feed included',
             '  name [<name>]            Read the cohort\'s name, or give it one',
         ],
@@ -940,11 +994,14 @@ export const chrisHelp = {
             'gather',
             'gather add /net/pacs/queries/qid:3125/Study_1.2.3/Series_4.5.6',
             'gather add ~/uploads/brain',
+            'gather add @SER3 @SER7',
+            'query PatientID:1234567,Modality:MR | gather add',
             'gather remove 2',
             'gather name "sag cohort"',
         ],
     },
     group: {
+        category: 'Single Resource',
         usage: 'groups <subcommand> [options]',
         description: 'Manage ChRIS user groups',
         options: [
@@ -961,6 +1018,7 @@ export const chrisHelp = {
         examples: ['groups list', 'group members pacs_users', 'group adduser pacs_users peter.hong joe.schmo', 'group removeuser pacs_users joe.schmo'],
     },
     groups: {
+        category: 'Resource Collections',
         usage: 'groups <subcommand> [options]',
         description: 'Manage ChRIS user groups',
         options: [
@@ -977,6 +1035,7 @@ export const chrisHelp = {
         examples: ['groups list', 'group members pacs_users', 'group adduser pacs_users peter.hong joe.schmo', 'group removeuser pacs_users joe.schmo'],
     },
     pluginmeta: {
+        category: 'Single Resource',
         usage: 'pluginmetas <subcommand> [options]',
         description: 'Browse ChRIS plugin metadata (abstract tool identities across versions)',
         options: [
@@ -988,6 +1047,7 @@ export const chrisHelp = {
         examples: ['pluginmetas list', 'pluginmetas search dircopy', 'pluginmetas inspect', 'pluginmeta plugins 12'],
     },
     pluginmetas: {
+        category: 'Resource Collections',
         usage: 'pluginmetas <subcommand> [options]',
         description: 'Browse ChRIS plugin metadata (abstract tool identities across versions)',
         options: [
@@ -999,6 +1059,7 @@ export const chrisHelp = {
         examples: ['pluginmetas list', 'pluginmetas search dircopy', 'pluginmetas inspect', 'pluginmeta plugins 12'],
     },
     plugininstance: {
+        category: 'Single Resource',
         usage: 'plugininstances <subcommand> [options]',
         description: 'Manage ChRIS plugin instances (jobs)',
         options: [
@@ -1013,6 +1074,7 @@ export const chrisHelp = {
         examples: ['jobs list', 'jobs list --all', 'jobs search status:started', 'jobs inspect', 'job cancel 42', 'job output 42'],
     },
     plugininstances: {
+        category: 'Resource Collections',
         usage: 'plugininstances <subcommand> [options]',
         description: 'Manage ChRIS plugin instances (jobs)',
         options: [
@@ -1027,6 +1089,7 @@ export const chrisHelp = {
         examples: ['jobs list', 'jobs list --all', 'jobs search status:started', 'jobs inspect', 'job cancel 42', 'job output 42'],
     },
     workflow: {
+        category: 'Single Resource',
         usage: 'workflows <subcommand> [options]',
         description: 'Manage ChRIS workflows (pipeline executions)',
         options: [
@@ -1041,6 +1104,7 @@ export const chrisHelp = {
         examples: ['workflows list', 'workflows list --all', 'workflows inspect', 'workflow jobs 7', 'workflow delete 7'],
     },
     workflows: {
+        category: 'Resource Collections',
         usage: 'workflows <subcommand> [options]',
         description: 'Manage ChRIS workflows (pipeline executions)',
         options: [
@@ -1054,13 +1118,14 @@ export const chrisHelp = {
         ],
         examples: ['workflows list', 'workflows list --all', 'workflows inspect', 'workflow jobs 7', 'workflow delete 7'],
     },
-    meta: { usage: 'pluginmetas <subcommand> [options]', description: 'Alias for pluginmeta/pluginmetas', options: [...RESOURCE_LIST_OPTIONS], examples: ['metas list', 'meta inspect'] },
-    metas: { usage: 'pluginmetas <subcommand> [options]', description: 'Alias for pluginmeta/pluginmetas', options: [...RESOURCE_LIST_OPTIONS], examples: ['metas list', 'meta inspect'] },
-    instance: { usage: 'plugininstances <subcommand> [options]', description: 'Alias for plugininstance/plugininstances/job/jobs', options: [...RESOURCE_LIST_OPTIONS], examples: ['instances list', 'instance cancel 42'] },
-    instances: { usage: 'plugininstances <subcommand> [options]', description: 'Alias for plugininstance/plugininstances/job/jobs', options: [...RESOURCE_LIST_OPTIONS], examples: ['instances list', 'instance cancel 42'] },
-    job: { usage: 'plugininstances <subcommand> [options]', description: 'Alias for plugininstance/plugininstances', options: [...RESOURCE_LIST_OPTIONS], examples: ['jobs list', 'job cancel 42', 'job output 42'] },
-    jobs: { usage: 'plugininstances <subcommand> [options]', description: 'Alias for plugininstance/plugininstances', options: [...RESOURCE_LIST_OPTIONS], examples: ['jobs list', 'job cancel 42', 'job output 42'] },
+    meta: { category: 'Single Resource', usage: 'pluginmetas <subcommand> [options]', description: 'Alias for pluginmeta/pluginmetas', options: [...RESOURCE_LIST_OPTIONS], examples: ['metas list', 'meta inspect'] },
+    metas: { category: 'Resource Collections', usage: 'pluginmetas <subcommand> [options]', description: 'Alias for pluginmeta/pluginmetas', options: [...RESOURCE_LIST_OPTIONS], examples: ['metas list', 'meta inspect'] },
+    instance: { category: 'Single Resource', usage: 'plugininstances <subcommand> [options]', description: 'Alias for plugininstance/plugininstances/job/jobs', options: [...RESOURCE_LIST_OPTIONS], examples: ['instances list', 'instance cancel 42'] },
+    instances: { category: 'Resource Collections', usage: 'plugininstances <subcommand> [options]', description: 'Alias for plugininstance/plugininstances/job/jobs', options: [...RESOURCE_LIST_OPTIONS], examples: ['instances list', 'instance cancel 42'] },
+    job: { category: 'Single Resource', usage: 'plugininstances <subcommand> [options]', description: 'Alias for plugininstance/plugininstances', options: [...RESOURCE_LIST_OPTIONS], examples: ['jobs list', 'job cancel 42', 'job output 42'] },
+    jobs: { category: 'Resource Collections', usage: 'plugininstances <subcommand> [options]', description: 'Alias for plugininstance/plugininstances', options: [...RESOURCE_LIST_OPTIONS], examples: ['jobs list', 'job cancel 42', 'job output 42'] },
     dcm: {
+        category: 'Imaging',
         usage: 'dcm <series|tags> <path> [options]',
         summary: 'DICOM as the kernel sees it: a folder as a series, a file or folder as tags',
         description: 'Read DICOM without leaving the session. `dcm series` answers what a folder is as a series: '
@@ -1089,6 +1154,7 @@ export const chrisHelp = {
         ],
     },
     image: {
+        category: 'Imaging',
         usage: 'image [--force] <path>',
         summary: 'Show a DICOM series or a volume — a browser draws it, a terminal reflects it',
         description: 'Open an image as the kernel sees it. `image <path>` resolves what the path is — a series '
@@ -1109,6 +1175,7 @@ export const chrisHelp = {
         ],
     },
     cubepath: {
+        category: 'Navigation',
         usage: 'cubepath <vfs-path> [--pacsserver <id>]',
         description: 'Show CUBE FS path and file count for each series under a PACS VFS path. Zero files = not pulled.',
         options: [
@@ -1127,9 +1194,16 @@ export const chrisHelp = {
         ],
     },
     query: {
+        category: 'PACS',
         usage: 'query <Key:Value[,Key:Value...]> [--patients <list|@cfs-file>] [--title <title>] [--pacsserver <id>] [--fresh]',
         description: 'Create a PACS query, wait for results, and print the VFS path',
         options: [
+            'Some PACS ignore keys: PACSDCM answers SeriesDescription and StudyDescription',
+            'as if they were not asked (query says so). Narrow the answer with grep:',
+            '  query PatientID:1234567,Modality:MR | grep -i t1 | grep -vi gadavist',
+            'The keys each server ignores: ~/.config/mise/pacs.json',
+            '  {"ignoredKeys": {"PACSDCM": ["SeriesDescription", "StudyDescription"]}}',
+            '',
             '--title <title>      Title for the query record (default: Query <timestamp>)',
             '--pacsserver <id>    Override PACS server (default: context PACSserver)',
             '--table              Render results as a table instead of the default list',
@@ -1157,6 +1231,7 @@ export const chrisHelp = {
         ],
     },
     pull: {
+        category: 'PACS',
         usage: 'pull [--detach] [--retry N] [--new-feed <title> [--plugin <selector>|--pipeline <selector>] [-- <args...>]] <vfs-path|query-expr> [...]',
         description: 'Pull PACS series into ChRIS storage; accepts VFS paths or query expressions (blocking)',
         options: [

package/dist/chris/help.js.map

@@ -1 +1 @@
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package/dist/chris/references.js

@@ -96,8 +96,8 @@ export const chrisReferences = [
  */
 export const chrisAnswerKinds = [
     { code: 'SER', word: 'a series', example: '@SER3' },
-    { code: 'STD', word: 'a study', example: '@STD1' },
-    { code: 'PAT', word: 'a patient' },
+    { code: 'STD', word: 'a study', example: '@STD1', group: true },
+    { code: 'PAT', word: 'a patient', group: true },
 ];
 /**
  * What each ChRIS verb takes by index, and what it adds to `cd`. A verb

package/dist/chris/references.js.map

@@ -1 +1 @@
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