@fnndsc/brasa 0.23.2 → 0.25.0

package/dist/builtins/res/expect.d.ts

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+import { CommandEnvelope } from '@fnndsc/cumin';
+import { duration_parse } from '../../lib/duration.js';
+export { duration_parse };
+/** The model kind under which a checked claim travels to a surface. */
+export declare const EXPECT_MODEL_KIND: string;
+/** What a claim turned out to be. */
+export interface ExpectVerdict {
+    /** What was asked about, as the operator wrote it. */
+    claim: string;
+    /** Whether the claim held. */
+    held: boolean;
+    /** The value asked for. */
+    wanted: string;
+    /** The value found; absent when the subject could not be read at all. */
+    got: string | null;
+    /** Why the subject could not answer, when it could not. */
+    refusal?: string;
+    /** How long the claim was waited on. */
+    waitedMs: number;
+}
+/**
+ * Compares what was found against what was wanted.
+ *
+ * @param got - The value the session answered.
+ * @param predicate - How to compare.
+ * @param wanted - The value the claim asked for.
+ * @returns Whether the claim holds, or a refusal when the comparison is not meaningful.
+ */
+export declare function claim_holds(got: string, predicate: string, wanted: string): {
+    held: boolean;
+} | {
+    refusal: string;
+};
+/**
+ * Builtin handler for the `expect` command.
+ *
+ * @param args - Parsed command arguments.
+ * @returns An ok envelope when the claim holds, an error envelope when it does not.
+ */
+export declare function builtin_expect(args: string[]): Promise<CommandEnvelope>;

package/dist/builtins/res/expect.js

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+/**
+ * @file Builtin expect command: a claim the session can refuse.
+ *
+ * A workflow that only acts is a demonstration. `expect` is what makes one a
+ * TEST: it states a claim about the session — how many things are gathered,
+ * what a feed's status is, what a produced file's tags say — and refuses,
+ * non-zero, when the claim does not hold. Because it is a verb rather than a
+ * harness, a workflow asserts wherever it is played: in CI, at an operator's
+ * console, or in someone else's browser after they were handed the file.
+ *
+ * Time lives here and nowhere else. `--within` polls until the claim holds or
+ * the deadline passes, which is why no other verb needs a timeout and why the
+ * language has no sleep: a sleep asserts nothing and lies about how long the
+ * work actually took.
+ *
+ * @module
+ */
+import chalk from 'chalk';
+import path from 'path';
+import { envelope_ok, envelope_error, procCache_get } from '@fnndsc/cumin';
+import { jobs_statusBatch } from '@fnndsc/salsa';
+import { commandArgs_process, path_resolve } from '../utils.js';
+import { duration_parse } from '../../lib/duration.js';
+export { duration_parse };
+import { vfs } from '../../lib/vfs/vfs.js';
+import { cohort_read } from './gather.store.js';
+import { path_physical, tagsModel_read } from './dicom.js';
+import { feedStatus_derive } from '../proc.helpers.js';
+import { commandCancellation_enable, commandCancellation_signalGet } from '../../core/cancellation.js';
+/** The model kind under which a checked claim travels to a surface. */
+export const EXPECT_MODEL_KIND = 'expect.result';
+/** How the two sides of a claim are compared. */
+const PREDICATES = [
+    'eq', 'ne', 'gt', 'gte', 'lt', 'lte', 'contains', 'notContains', 'matches',
+];
+/** What a claim can be about. */
+const SUBJECTS = ['gather', 'feed', 'run', 'path'];
+/** Predicates that only mean anything about numbers. */
+const NUMERIC_PREDICATES = new Set(['gt', 'gte', 'lt', 'lte']);
+/** How often a waiting claim asks again. */
+const RECHECK_MS = 2000;
+/**
+ * Compares what was found against what was wanted.
+ *
+ * @param got - The value the session answered.
+ * @param predicate - How to compare.
+ * @param wanted - The value the claim asked for.
+ * @returns Whether the claim holds, or a refusal when the comparison is not meaningful.
+ */
+export function claim_holds(got, predicate, wanted) {
+    if (NUMERIC_PREDICATES.has(predicate)) {
+        const left = Number(got);
+        const right = Number(wanted);
+        if (Number.isNaN(left) || Number.isNaN(right)) {
+            return { refusal: `${predicate} compares numbers, and "${Number.isNaN(left) ? got : wanted}" is not one` };
+        }
+        if (predicate === 'gt')
+            return { held: left > right };
+        if (predicate === 'gte')
+            return { held: left >= right };
+        if (predicate === 'lt')
+            return { held: left < right };
+        return { held: left <= right };
+    }
+    if (predicate === 'eq' || predicate === 'ne') {
+        // A count read back as text and a count written as a number are the same
+        // claim: 14 and "14" must not disagree because one came from a table.
+        const numeric = got.trim() !== '' && wanted.trim() !== ''
+            && !Number.isNaN(Number(got)) && !Number.isNaN(Number(wanted));
+        const same = numeric ? Number(got) === Number(wanted) : got === wanted;
+        return { held: predicate === 'eq' ? same : !same };
+    }
+    if (predicate === 'contains')
+        return { held: got.includes(wanted) };
+    if (predicate === 'notContains')
+        return { held: !got.includes(wanted) };
+    try {
+        return { held: new RegExp(wanted).test(got) };
+    }
+    catch {
+        return { refusal: `matches needs a regular expression, and "${wanted}" is not one` };
+    }
+}
+/**
+ * Reads how much of the cohort is home.
+ *
+ * A place gathered from the filesystem was never anywhere else, so it counts
+ * as home; a series counts once CUBE has said where it landed.
+ *
+ * @param state - The cohort.
+ * @returns How many members are in CUBE.
+ */
+function cohortPulled_count(state) {
+    return state.series.filter((member) => {
+        if (member.kind !== 'series')
+            return true;
+        const landed = member.folderPath;
+        return typeof landed === 'string' && landed.length > 0;
+    }).length;
+}
+/**
+ * Answers a claim about the cohort.
+ *
+ * @param property - `size` or `pulled`.
+ * @returns What the cohort says.
+ */
+async function gather_read(property) {
+    const state = await cohort_read();
+    if (property === 'size')
+        return { got: `${state.series.length}` };
+    if (property === 'pulled')
+        return { got: `${cohortPulled_count(state)}` };
+    if (property === 'name')
+        return { got: state.name ?? '' };
+    return { got: null, refusal: `gather has no property "${property}" — try size, pulled or name` };
+}
+/**
+ * Answers a claim about a feed.
+ *
+ * @param target - The feed id.
+ * @param property - `status` today.
+ * @returns What the feed says.
+ */
+async function feed_read(target, property) {
+    const feedID = Number(target);
+    if (!Number.isInteger(feedID))
+        return { got: null, refusal: `"${target}" is not a feed id` };
+    if (property !== 'status')
+        return { got: null, refusal: `feed has no property "${property}" — try status` };
+    const feed = procCache_get().feed_get(feedID);
+    if (feed === undefined || feed === null) {
+        return { got: null, refusal: `feed ${feedID} is not in this session's index yet` };
+    }
+    return { got: feedStatus_derive(feed) };
+}
+/**
+ * Answers a claim about one run.
+ *
+ * @param target - The plugin instance id.
+ * @param property - `status` today.
+ * @returns What the run says.
+ */
+async function run_read(target, property) {
+    const instanceID = Number(target);
+    if (!Number.isInteger(instanceID))
+        return { got: null, refusal: `"${target}" is not an instance id` };
+    if (property !== 'status')
+        return { got: null, refusal: `run has no property "${property}" — try status` };
+    const statuses = await jobs_statusBatch([instanceID]);
+    const status = statuses.get(instanceID);
+    if (status === undefined)
+        return { got: null, refusal: `instance ${instanceID} did not answer` };
+    return { got: status };
+}
+/** How far beneath a named folder a claim will look for what it was asked about. */
+const DEEP_MAX = 4;
+/**
+ * Walks a folder, gathering what it holds and the folders under it.
+ *
+ * A plugin's output is routinely NESTED — pfdicom writes under
+ * `share/incoming/<input tree>`, and a converter mirrors its input — so a
+ * claim about what a run produced, made at the node's own folder, would be
+ * false about a run that worked perfectly. The walk is bounded: a claim is
+ * a question about a result, not a crawl of the filesystem.
+ *
+ * @param root - Where to start.
+ * @param depth - How many levels below the root to visit.
+ * @returns Every item found, with the folder each was found in.
+ */
+async function folder_walkDeep(root, depth) {
+    const found = [];
+    const queue = [{ path: root, level: 0 }];
+    while (queue.length > 0) {
+        const here = queue.shift();
+        const listed = await vfs.data_get(here.path);
+        if (!listed.ok)
+            continue;
+        for (const item of listed.value) {
+            found.push({ folder: here.path, item });
+            if (item.type === 'dir' && here.level < depth) {
+                queue.push({ path: `${here.path.replace(/\/$/, '')}/${item.name}`, level: here.level + 1 });
+            }
+        }
+    }
+    return found;
+}
+/**
+ * Turns a shell-style pattern into a matcher.
+ *
+ * @param pattern - A glob such as `*.nii*`.
+ * @returns A regular expression anchored to the whole name.
+ */
+function glob_toRegExp(pattern) {
+    const escaped = pattern.replace(/[.+^${}()|[\]\\]/g, '\\$&')
+        .replace(/\*/g, '.*')
+        .replace(/\?/g, '.');
+    return new RegExp(`^${escaped}$`);
+}
+/**
+ * Answers a claim about a path: whether it is there, what it holds, what its
+ * headers say.
+ *
+ * @param target - The path, as the operator wrote it.
+ * @param property - `exists`, `count`, or `tags`.
+ * @param tagName - The tag to read, when the property is `tags`.
+ * @param matching - A glob narrowing a count.
+ * @param deep - Look beneath the folder, not only in it.
+ * @returns What the path says.
+ */
+async function path_read(target, property, tagName, matching, deep) {
+    const resolved = await path_resolve(target);
+    if (property === 'exists') {
+        const listed = await vfs.data_get(resolved);
+        if (listed.ok)
+            return { got: 'true' };
+        // A file is not a listing: its parent knows it.
+        const parent = await vfs.data_get(path.posix.dirname(resolved));
+        if (!parent.ok)
+            return { got: 'false' };
+        const leaf = path.posix.basename(resolved);
+        return { got: `${parent.value.some((item) => item.name === leaf)}` };
+    }
+    if (property === 'count') {
+        if (deep) {
+            const walked = await folder_walkDeep(resolved, DEEP_MAX);
+            const files = walked
+                .map((entry) => entry.item)
+                .filter((item) => item.type !== 'dir');
+            if (matching === undefined)
+                return { got: `${files.length}` };
+            const deepPattern = glob_toRegExp(matching);
+            return { got: `${files.filter((item) => deepPattern.test(item.name)).length}` };
+        }
+        const listed = await vfs.data_get(resolved);
+        if (!listed.ok)
+            return { got: null, refusal: `${resolved} cannot be listed` };
+        if (matching === undefined)
+            return { got: `${listed.value.length}` };
+        const pattern = glob_toRegExp(matching);
+        return { got: `${listed.value.filter((item) => pattern.test(item.name)).length}` };
+    }
+    if (property === 'tags') {
+        if (tagName === undefined)
+            return { got: null, refusal: 'expect path <p> tags <TagName> <predicate> <value>' };
+        const physical = await path_physical(resolved);
+        let model = await tagsModel_read(physical);
+        if (!model.ok) {
+            // A plugin's output is routinely nested, so a tag claim made at the
+            // node's own folder looks BENEATH it before giving up: the files a run
+            // produced are what the claim is about, wherever the plugin filed them.
+            const walked = await folder_walkDeep(resolved, DEEP_MAX);
+            const folders = [...new Set(walked
+                    .filter((entry) => entry.item.type === 'dir')
+                    .map((entry) => `${entry.folder.replace(/\/$/, '')}/${entry.item.name}`))];
+            for (const folder of folders) {
+                const beneath = await tagsModel_read(await path_physical(folder));
+                if (beneath.ok) {
+                    model = beneath;
+                    break;
+                }
+            }
+        }
+        if (!model.ok)
+            return { got: null, refusal: `${resolved} holds no readable DICOM, here or beneath it` };
+        const constant = model.value.constant.find((tag) => tag.name === tagName || tag.tag === tagName);
+        if (constant !== undefined)
+            return { got: constant.value };
+        // A tag that varies across the folder answers with every value it takes,
+        // so a claim about "the" value cannot pass by reading only the first file.
+        const varying = model.value.varying.find((tag) => tag.name === tagName || tag.tag === tagName);
+        if (varying !== undefined) {
+            const values = [...new Set(varying.values
+                    .map((entry) => entry.value ?? '')
+                    .filter((value) => value.length > 0))];
+            return { got: values.join(', ') };
+        }
+        return { got: '' };
+    }
+    return { got: null, refusal: `path has no property "${property}" — try exists, count or tags` };
+}
+/**
+ * Asks the session once.
+ *
+ * @param subject - What the claim is about.
+ * @param target - Which one, for the subjects that need naming.
+ * @param property - What about it.
+ * @param tagName - The tag, when the property is `tags`.
+ * @param matching - A glob, when the property is `count`.
+ * @param deep - Whether to look beneath the path as well as in it.
+ * @returns What the session answered.
+ */
+async function subject_read(subject, target, property, tagName, matching, deep) {
+    if (subject === 'gather')
+        return await gather_read(property);
+    if (subject === 'feed')
+        return await feed_read(target ?? '', property);
+    if (subject === 'run')
+        return await run_read(target ?? '', property);
+    if (subject === 'path')
+        return await path_read(target ?? '', property, tagName, matching, deep);
+    return { got: null, refusal: `expect knows nothing about "${subject}" — try gather, feed, run or path` };
+}
+/**
+ * Sleeps between asks, unless the command is cancelled first.
+ *
+ * @param ms - How long to wait.
+ * @param signal - The foreground command's abort signal.
+ * @returns True when the sleep completed.
+ */
+async function pause_take(ms, signal) {
+    if (signal?.aborted === true)
+        return false;
+    return await new Promise((resolve) => {
+        const onAbort = () => { clearTimeout(timer); resolve(false); };
+        const timer = setTimeout(() => {
+            signal?.removeEventListener('abort', onAbort);
+            resolve(true);
+        }, ms);
+        signal?.addEventListener('abort', onAbort, { once: true });
+    });
+}
+/**
+ * Renders a claim the way it was made, for the readout.
+ *
+ * @param parts - The claim's words.
+ * @returns One line.
+ */
+function claim_render(parts) {
+    return parts.filter((part) => part.length > 0).join(' ');
+}
+/**
+ * Builtin handler for the `expect` command.
+ *
+ * @param args - Parsed command arguments.
+ * @returns An ok envelope when the claim holds, an error envelope when it does not.
+ */
+export async function builtin_expect(args) {
+    // `--deep` carries no value: undeclared, the parser hands it the next
+    // operand — which is the COMPARISON — and the claim loses its predicate.
+    const parsed = commandArgs_process(args, { booleanLongOptions: ['deep'] });
+    const operands = parsed._;
+    const subject = operands[0];
+    if (subject === undefined) {
+        process.exitCode = 1;
+        return envelope_error('', undefined, `${chalk.red('Usage: expect <gather|feed|run|path> [<target>] <property> [<predicate> <value>] [--within <duration>]')}\n`);
+    }
+    // The subject is checked FIRST: read as a shape instead, an unknown
+    // subject refuses by complaining about whatever word happened to land
+    // where a comparison goes, which names the wrong fault.
+    if (!SUBJECTS.includes(subject)) {
+        process.exitCode = 1;
+        return envelope_error('', undefined, `${chalk.red(`expect knows nothing about "${subject}" — try ${SUBJECTS.join(', ')}.`)}\n`);
+    }
+    // `gather` is the one subject that names nothing: there is one cohort.
+    const named = subject !== 'gather';
+    const target = named ? operands[1] : undefined;
+    const property = named ? operands[2] : operands[1];
+    const rest = named ? operands.slice(3) : operands.slice(2);
+    const tagName = property === 'tags' ? rest.shift() : undefined;
+    if (property === undefined) {
+        process.exitCode = 1;
+        return envelope_error('', undefined, `${chalk.red(`expect ${subject}: say what about it — a property such as size, status, exists or count.`)}\n`);
+    }
+    // `expect path <p> exists` is the claim in full; everything else compares.
+    const predicate = rest[0] ?? (property === 'exists' ? 'eq' : '');
+    const wanted = rest[1] ?? (property === 'exists' ? 'true' : '');
+    if (predicate === '' || !PREDICATES.includes(predicate)) {
+        process.exitCode = 1;
+        return envelope_error('', undefined, `${chalk.red(`expect: "${predicate}" is not a comparison — use ${PREDICATES.join(', ')}.`)}\n`);
+    }
+    let deadlineMs = 0;
+    if (typeof parsed.within === 'string') {
+        const parsedWait = duration_parse(parsed.within);
+        if (parsedWait === null) {
+            process.exitCode = 1;
+            return envelope_error('', undefined, `${chalk.red(`expect: --within takes a duration such as 30s, 20m or 2h, not "${parsed.within}".`)}\n`);
+        }
+        deadlineMs = parsedWait;
+    }
+    // The claim is printed as it was MADE, narrowing included: a ✓ reading
+    // `count gt 0` for a claim that was about `*.nii*` says the wrong thing
+    // held, and a battery is read by people who were not there.
+    const narrowing = matching_get(parsed) === undefined ? '' : `--matching '${matching_get(parsed)}'`;
+    const claim = claim_render([
+        subject, target ?? '', property, tagName ?? '', narrowing,
+        parsed.deep === true ? '--deep' : '', predicate, wanted,
+    ]);
+    const started = Date.now();
+    if (deadlineMs > 0)
+        commandCancellation_enable();
+    const signal = deadlineMs > 0 ? commandCancellation_signalGet() : undefined;
+    let reading = { got: null };
+    let outcome = { held: false };
+    for (;;) {
+        reading = await subject_read(subject, target, property, tagName, matching_get(parsed), parsed.deep === true);
+        if (reading.got !== null) {
+            outcome = claim_holds(reading.got, predicate, wanted);
+            if ('refusal' in outcome)
+                break;
+            if (outcome.held)
+                break;
+        }
+        const elapsed = Date.now() - started;
+        if (elapsed >= deadlineMs)
+            break;
+        const slept = await pause_take(Math.min(RECHECK_MS, deadlineMs - elapsed), signal);
+        if (!slept)
+            break;
+    }
+    const waitedMs = Date.now() - started;
+    const held = 'held' in outcome && outcome.held && reading.got !== null;
+    const refusal = 'refusal' in outcome ? outcome.refusal : reading.refusal;
+    const verdict = {
+        claim,
+        held,
+        wanted,
+        got: reading.got,
+        ...(refusal !== undefined ? { refusal } : {}),
+        waitedMs,
+    };
+    const model = { kind: EXPECT_MODEL_KIND, data: verdict };
+    if (held) {
+        const took = deadlineMs > 0 ? chalk.gray(` (${Math.round(waitedMs / 1000)}s)`) : '';
+        return envelope_ok(`${chalk.green('✓')} ${claim}${took}\n`, model);
+    }
+    process.exitCode = 1;
+    const lines = [
+        chalk.red(`✗ ${claim}`),
+        `    wanted  ${wanted}`,
+        `    got     ${reading.got ?? '—'}`,
+    ];
+    if (refusal !== undefined)
+        lines.push(`    because ${refusal}`);
+    if (deadlineMs > 0)
+        lines.push(chalk.gray(`    waited  ${Math.round(waitedMs / 1000)}s of ${Math.round(deadlineMs / 1000)}s`));
+    return envelope_error('', undefined, `${lines.join('\n')}\n`);
+}
+/**
+ * The glob narrowing a count, when one was given.
+ *
+ * @param parsed - The parsed arguments.
+ * @returns The pattern, or undefined.
+ */
+function matching_get(parsed) {
+    return typeof parsed.matching === 'string' ? parsed.matching : undefined;
+}
+//# sourceMappingURL=expect.js.map

package/dist/builtins/res/expect.js.map

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package/dist/builtins/res/gather.d.ts

@@ -0,0 +1,10 @@
+import { CommandEnvelope } from '@fnndsc/cumin';
+/** The model kind under which a cohort travels to a surface. */
+export declare const GATHER_MODEL_KIND: string;
+/**
+ * Builtin handler for the `gather` command.
+ *
+ * @param args - Parsed command arguments.
+ * @returns An envelope carrying the cohort, or a usage refusal.
+ */
+export declare function builtin_gather(args: string[]): Promise<CommandEnvelope>;