@flydocs/cli 0.6.0-alpha.13 → 0.6.0-alpha.20

package/dist/cli.js

@@ -15,7 +15,7 @@ var CLI_VERSION, CLI_NAME, PACKAGE_NAME, POSTHOG_API_KEY;
 var init_constants = __esm({
   "src/lib/constants.ts"() {
     "use strict";
-    CLI_VERSION = "0.6.0-alpha.13";
+    CLI_VERSION = "0.6.0-alpha.20";
     CLI_NAME = "flydocs";
     PACKAGE_NAME = "@flydocs/cli";
     POSTHOG_API_KEY = "phc_v1MSJTQDFkMS90CBh3mxIz3v8bYCCnKU6v1ir6bz0Xn";
@@ -299,6 +299,7 @@ function extractPreservedValues(config) {
     issueLabels: config.issueLabels ?? {},
     detectedStack: config.detectedStack ?? {},
     skills: config.skills ?? {},
+    topology: config.topology,
     designSystem: config.designSystem ?? null,
     aiLabor: config.aiLabor ?? {}
   };
@@ -328,6 +329,9 @@ async function mergeConfig(templateDir, version, tierFlag, preserved) {
   if (Object.keys(preserved.skills).length > 0) {
     config.skills = preserved.skills;
   }
+  if (preserved.topology !== void 0) {
+    config.topology = preserved.topology;
+  }
   if (preserved.designSystem !== null) {
     config.designSystem = preserved.designSystem;
   }
@@ -344,75 +348,32 @@ var init_config = __esm({
 
 // src/lib/skills.ts
 import { join as join4 } from "path";
-async function installOwnedSkills(templateDir, targetDir, tier) {
+async function installOwnedSkills(templateDir, targetDir, _tier) {
   const skillsDir = join4(targetDir, ".claude", "skills");
   const templateSkillsDir = join4(templateDir, ".claude", "skills");
   await replaceDirectory(
-    join4(templateSkillsDir, "flydocs-workflow"),
-    join4(skillsDir, "flydocs-workflow")
-  );
-  const activeMech = MECHANISM_SKILLS[tier];
-  const inactiveMech = tier === "local" ? MECHANISM_SKILLS.cloud : MECHANISM_SKILLS.local;
-  await replaceDirectory(
-    join4(templateSkillsDir, activeMech),
-    join4(skillsDir, activeMech)
+    join4(templateSkillsDir, OWNED_SKILL),
+    join4(skillsDir, OWNED_SKILL)
   );
-  const { rm: rm6 } = await import("fs/promises");
-  const inactivePath = join4(skillsDir, inactiveMech);
-  if (await pathExists(inactivePath)) {
-    await rm6(inactivePath, { recursive: true, force: true });
-  }
-  for (const skill of CORE_SKILLS) {
-    if (skill === "flydocs-workflow") continue;
-    const src = join4(templateSkillsDir, skill);
-    if (await pathExists(src)) {
-      await replaceDirectory(src, join4(skillsDir, skill));
-    }
-  }
-  if (tier === "cloud") {
-    for (const skill of CLOUD_ONLY_SKILLS) {
-      const src = join4(templateSkillsDir, skill);
-      if (await pathExists(src)) {
-        await replaceDirectory(src, join4(skillsDir, skill));
-      }
-    }
-  }
   const readmeSrc = join4(templateSkillsDir, "README.md");
   if (await pathExists(readmeSrc)) {
     await copyFile(readmeSrc, join4(skillsDir, "README.md"));
   }
 }
-async function replaceOwnedSkills(templateDir, targetDir, tier) {
+async function replaceOwnedSkills(templateDir, targetDir, _tier) {
   const skillsDir = join4(targetDir, ".claude", "skills");
   const templateSkillsDir = join4(templateDir, ".claude", "skills");
   const { rm: rm6 } = await import("fs/promises");
-  for (const skill of CORE_SKILLS) {
-    const src = join4(templateSkillsDir, skill);
-    if (await pathExists(src)) {
-      await replaceDirectory(src, join4(skillsDir, skill));
-    }
-  }
-  for (const skill of CLOUD_ONLY_SKILLS) {
-    const dest = join4(skillsDir, skill);
-    if (tier === "cloud") {
-      const src = join4(templateSkillsDir, skill);
-      if (await pathExists(src)) {
-        await replaceDirectory(src, dest);
-      }
-    } else if (await pathExists(dest)) {
-      await rm6(dest, { recursive: true, force: true });
-    }
-  }
-  const activeMech = MECHANISM_SKILLS[tier];
-  const inactiveMech = tier === "local" ? MECHANISM_SKILLS.cloud : MECHANISM_SKILLS.local;
-  const inactivePath = join4(skillsDir, inactiveMech);
-  if (await pathExists(inactivePath)) {
-    await rm6(inactivePath, { recursive: true, force: true });
-  }
   await replaceDirectory(
-    join4(templateSkillsDir, activeMech),
-    join4(skillsDir, activeMech)
+    join4(templateSkillsDir, OWNED_SKILL),
+    join4(skillsDir, OWNED_SKILL)
   );
+  for (const legacy of LEGACY_SKILLS) {
+    const legacyPath = join4(skillsDir, legacy);
+    if (await pathExists(legacyPath)) {
+      await rm6(legacyPath, { recursive: true, force: true });
+    }
+  }
   const readmeSrc = join4(templateSkillsDir, "README.md");
   if (await pathExists(readmeSrc)) {
     await copyFile(readmeSrc, join4(skillsDir, "README.md"));
@@ -426,50 +387,34 @@ async function copyCursorRules(targetDir) {
     targetDir,
     ".claude",
     "skills",
-    "flydocs-workflow",
+    OWNED_SKILL,
     "cursor-rule.mdc"
   );
   if (await pathExists(workflowRule)) {
     await copyFile(workflowRule, join4(rulesDir, "flydocs-workflow.mdc"));
   }
-  for (const mech of ["flydocs-local", "flydocs-cloud"]) {
-    const mechRule = join4(
-      targetDir,
-      ".claude",
-      "skills",
-      mech,
-      "cursor-rule.mdc"
-    );
-    if (await pathExists(mechRule)) {
-      await copyFile(mechRule, join4(rulesDir, "flydocs-mechanism.mdc"));
+  const { rm: rm6 } = await import("fs/promises");
+  for (const legacy of ["flydocs-mechanism.mdc", "flydocs-context7.mdc"]) {
+    const legacyRule = join4(rulesDir, legacy);
+    if (await pathExists(legacyRule)) {
+      await rm6(legacyRule, { force: true });
     }
   }
-  const context7Rule = join4(
-    targetDir,
-    ".claude",
-    "skills",
-    "flydocs-context7",
-    "cursor-rule.mdc"
-  );
-  if (await pathExists(context7Rule)) {
-    await copyFile(context7Rule, join4(rulesDir, "flydocs-context7.mdc"));
-  }
 }
-var CORE_SKILLS, CLOUD_ONLY_SKILLS, MECHANISM_SKILLS;
+var OWNED_SKILL, LEGACY_SKILLS;
 var init_skills = __esm({
   "src/lib/skills.ts"() {
     "use strict";
     init_fs_ops();
-    CORE_SKILLS = [
-      "flydocs-workflow",
+    OWNED_SKILL = "flydocs-workflow";
+    LEGACY_SKILLS = [
+      "flydocs-cloud",
+      "flydocs-local",
       "flydocs-context-graph",
-      "flydocs-context7"
+      "flydocs-context7",
+      "flydocs-figma",
+      "flydocs-estimates"
     ];
-    CLOUD_ONLY_SKILLS = ["flydocs-figma", "flydocs-estimates"];
-    MECHANISM_SKILLS = {
-      local: "flydocs-local",
-      cloud: "flydocs-cloud"
-    };
   }
 });
 
@@ -711,7 +656,9 @@ import { join as join7 } from "path";
 async function runManifestGeneration(targetDir) {
   const scriptPath = join7(
     targetDir,
-    ".flydocs",
+    ".claude",
+    "skills",
+    "flydocs-workflow",
     "scripts",
     "generate_manifest.py"
   );
@@ -731,7 +678,7 @@ async function runContextGraphBuild(targetDir) {
     targetDir,
     ".claude",
     "skills",
-    "flydocs-context-graph",
+    "flydocs-workflow",
     "scripts",
     "graph_build.py"
   );
@@ -1332,10 +1279,19 @@ async function scanDeprecated(targetDir) {
       found.push(dir);
     }
   }
-  for (const hook of DEPRECATED_HOOKS) {
-    const p = join10(targetDir, ".flydocs", "hooks", hook);
-    if (await pathExists(p)) {
-      found.push(`.flydocs/hooks/${hook}`);
+  const foundFlydocsDirs = /* @__PURE__ */ new Set();
+  for (const dir of DEPRECATED_FLYDOCS_DIRS) {
+    if (await pathExists(join10(targetDir, dir))) {
+      found.push(dir);
+      foundFlydocsDirs.add(dir);
+    }
+  }
+  if (!foundFlydocsDirs.has(".flydocs/hooks")) {
+    for (const hook of DEPRECATED_HOOKS) {
+      const p = join10(targetDir, ".flydocs", "hooks", hook);
+      if (await pathExists(p)) {
+        found.push(`.flydocs/hooks/${hook}`);
+      }
     }
   }
   for (const rule of DEPRECATED_CURSOR_RULES) {
@@ -1420,7 +1376,7 @@ async function promptCleanup(targetDir, paths) {
     printStatus(`Deleted: ${p}`);
   }
 }
-var DEPRECATED_DIRS, DEPRECATED_FILES, DEPRECATED_SKILLS, DEPRECATED_RULES_DIR, DEPRECATED_HOOKS, DEPRECATED_CURSOR_RULES, DEPRECATED_CURSOR_RULE_DIRS, DEPRECATED_COMMANDS;
+var DEPRECATED_DIRS, DEPRECATED_FILES, DEPRECATED_SKILLS, DEPRECATED_RULES_DIR, DEPRECATED_FLYDOCS_DIRS, DEPRECATED_HOOKS, DEPRECATED_CURSOR_RULES, DEPRECATED_CURSOR_RULE_DIRS, DEPRECATED_COMMANDS;
 var init_deprecated = __esm({
   "src/lib/deprecated.ts"() {
     "use strict";
@@ -1436,10 +1392,14 @@ var init_deprecated = __esm({
       "figma-mcp"
     ];
     DEPRECATED_RULES_DIR = [".flydocs/rules"];
+    DEPRECATED_FLYDOCS_DIRS = [".flydocs/hooks", ".flydocs/scripts"];
     DEPRECATED_HOOKS = [
       "linear-auto-approve.py",
       "session-end.py",
-      "prefer-scripts.py"
+      "prefer-scripts.py",
+      "auto-approve.py",
+      "post-edit.py",
+      "prompt-submit.py"
     ];
     DEPRECATED_CURSOR_RULES = [
       "designer-agent.mdc",
@@ -1529,6 +1489,7 @@ var init_gitignore = __esm({
       ".flydocs/backup-*/",
       ".flydocs/me.json",
       ".flydocs/validation-cache.json",
+      ".flydocs/integrity-cache.json",
       ".flydocs/session/",
       "flydocs/context/graph.json"
     ];
@@ -1543,6 +1504,7 @@ var init_gitignore = __esm({
 .flydocs/backup-*/
 .flydocs/me.json
 .flydocs/validation-cache.json
+.flydocs/integrity-cache.json
 .flydocs/session/
 flydocs/context/graph.json
 
@@ -1904,6 +1866,28 @@ async function fetchWorkspaces(apiKey) {
   const data = await response.json();
   return data;
 }
+async function fetchMe(apiKey) {
+  const baseUrl = process.env.FLYDOCS_RELAY_URL?.replace(/\/$/, "") ?? "https://app.flydocs.ai/api/relay";
+  const response = await fetch(`${baseUrl}/auth/me`, {
+    method: "GET",
+    headers: {
+      Authorization: `Bearer ${apiKey}`
+    },
+    signal: AbortSignal.timeout(15e3)
+  });
+  if (!response.ok) {
+    throw new Error(`Failed to fetch user identity: ${response.status}`);
+  }
+  const data = await response.json();
+  return {
+    displayName: data.displayName ?? null,
+    email: data.email ?? null,
+    providerId: data.providerId ?? null,
+    provider: data.provider ?? null,
+    providerIdentities: data.providerIdentities ?? [],
+    preferences: data.preferences ?? {}
+  };
+}
 async function validateLinearKey(apiKey) {
   const response = await fetch("https://api.linear.app/graphql", {
     method: "POST",
@@ -1951,6 +1935,36 @@ var init_api_key = __esm({
   }
 });
 
+// src/lib/integrity.ts
+import { readFile as readFile11, writeFile as writeFile8 } from "fs/promises";
+import { join as join15 } from "path";
+async function generateIntegrity(targetDir, version) {
+  const manifestPath = join15(targetDir, ".flydocs", "manifest.json");
+  if (!await pathExists(manifestPath)) return;
+  const manifest = JSON.parse(await readFile11(manifestPath, "utf-8"));
+  const ownership = manifest.ownership;
+  if (!ownership) return;
+  const ownedDirs = ownership.owned_directories?.paths ?? [];
+  const ownedFiles = ownership.owned_files?.paths ?? [];
+  const integrity = {
+    generatedAt: (/* @__PURE__ */ new Date()).toISOString(),
+    version,
+    ownedFiles,
+    ownedDirectories: ownedDirs
+  };
+  await writeFile8(
+    join15(targetDir, ".flydocs", "integrity.json"),
+    JSON.stringify(integrity, null, 2) + "\n",
+    "utf-8"
+  );
+}
+var init_integrity = __esm({
+  "src/lib/integrity.ts"() {
+    "use strict";
+    init_fs_ops();
+  }
+});
+
 // src/commands/install.ts
 var install_exports = {};
 __export(install_exports, {
@@ -1958,8 +1972,8 @@ __export(install_exports, {
 });
 import { defineCommand } from "citty";
 import { resolve as resolve2 } from "path";
-import { join as join15 } from "path";
-import { mkdir as mkdir7 } from "fs/promises";
+import { join as join16 } from "path";
+import { mkdir as mkdir7, writeFile as writeFile9 } from "fs/promises";
 import { confirm as confirm2, select, text, isCancel as isCancel3, cancel as cancel2 } from "@clack/prompts";
 import pc6 from "picocolors";
 var install_default;
@@ -1980,6 +1994,7 @@ var init_install = __esm({
     init_update_check();
     init_telemetry();
     init_api_key();
+    init_integrity();
     install_default = defineCommand({
       meta: {
         name: "install",
@@ -2041,7 +2056,7 @@ var init_install = __esm({
             process.exit(1);
           }
           tier = args.tier;
-        } else if (await pathExists(join15(targetDir, ".flydocs", "config.json"))) {
+        } else if (await pathExists(join16(targetDir, ".flydocs", "config.json"))) {
           try {
             const existing = await readConfig(targetDir);
             if (existing.tier) {
@@ -2092,6 +2107,7 @@ var init_install = __esm({
         await capture("install_tier_selected", { tier });
         let selectedWorkspaceId = null;
         let selectedWorkspaceName = null;
+        let apiKey = null;
         if (tier === "cloud") {
           console.log();
           console.log(`  ${pc6.bold("Connect to FlyDocs Cloud")}`);
@@ -2115,7 +2131,7 @@ var init_install = __esm({
             cancel2("Installation cancelled.");
             process.exit(0);
           }
-          const apiKey = keyInput.trim();
+          apiKey = keyInput.trim();
           printInfo("Validating API key...");
           try {
             const result = await validateRelayKey(apiKey);
@@ -2175,10 +2191,36 @@ var init_install = __esm({
           }
         }
         let skipConfigOverwrite = false;
-        if (!await pathExists(join15(targetDir, ".git"))) {
+        if (!await pathExists(join16(targetDir, ".git"))) {
           printWarning("No git repository detected. Run git init when ready.");
         }
         await ensureDirectories(targetDir, tier);
+        if (tier === "cloud" && apiKey) {
+          try {
+            const me = await fetchMe(apiKey);
+            const meData = {
+              displayName: me.displayName,
+              email: me.email,
+              providerId: me.providerId,
+              provider: me.provider,
+              providerIdentities: me.providerIdentities,
+              preferences: me.preferences
+            };
+            const mePath = join16(targetDir, ".flydocs", "me.json");
+            await writeFile9(
+              mePath,
+              JSON.stringify(meData, null, 2) + "\n",
+              "utf-8"
+            );
+            if (me.displayName) {
+              printStatus(`Identity: ${pc6.bold(me.displayName)}`);
+            }
+          } catch {
+            printWarning(
+              "Could not fetch user identity. Run /flydocs-setup to configure later."
+            );
+          }
+        }
         const existingFiles = await detectExistingConfigs(targetDir);
         if (existingFiles.length > 0) {
           console.log();
@@ -2227,31 +2269,29 @@ var init_install = __esm({
         }
         console.log("Installing framework files...");
         await replaceDirectory(
-          join15(templateDir, ".flydocs", "templates"),
-          join15(targetDir, ".flydocs", "templates")
-        );
-        await replaceDirectory(
-          join15(templateDir, ".flydocs", "hooks"),
-          join15(targetDir, ".flydocs", "hooks")
+          join16(templateDir, ".flydocs", "templates"),
+          join16(targetDir, ".flydocs", "templates")
         );
         await replaceDirectory(
-          join15(templateDir, ".flydocs", "scripts"),
-          join15(targetDir, ".flydocs", "scripts")
+          join16(templateDir, ".claude", "hooks"),
+          join16(targetDir, ".claude", "hooks")
         );
         await copyFile(
-          join15(templateDir, ".flydocs", "version"),
-          join15(targetDir, ".flydocs", "version")
+          join16(templateDir, ".flydocs", "version"),
+          join16(targetDir, ".flydocs", "version")
         );
-        const manifestSrc = join15(templateDir, "manifest.json");
+        const manifestSrc = join16(templateDir, "manifest.json");
         if (await pathExists(manifestSrc)) {
-          await copyFile(manifestSrc, join15(targetDir, ".flydocs", "manifest.json"));
+          await copyFile(manifestSrc, join16(targetDir, ".flydocs", "manifest.json"));
         }
-        const changelogSrc = join15(templateDir, "CHANGELOG.md");
+        const changelogSrc = join16(templateDir, "CHANGELOG.md");
         if (await pathExists(changelogSrc)) {
-          await copyFile(changelogSrc, join15(targetDir, ".flydocs", "CHANGELOG.md"));
+          await copyFile(changelogSrc, join16(targetDir, ".flydocs", "CHANGELOG.md"));
         }
-        printStatus(".flydocs/templates, hooks, version, manifest, changelog");
-        const configPath = join15(targetDir, ".flydocs", "config.json");
+        printStatus(
+          ".flydocs/templates, .claude/hooks, version, manifest, changelog"
+        );
+        const configPath = join16(targetDir, ".flydocs", "config.json");
         if (!await pathExists(configPath)) {
           const config = await createFreshConfig(templateDir, version, tier);
           if (selectedWorkspaceId) {
@@ -2327,20 +2367,20 @@ var init_install = __esm({
         }
         await capture("install_agents_chosen", { install_agents: installAgents });
         if (installAgents) {
-          const claudeAgentsSrc = join15(templateDir, ".claude", "agents");
+          const claudeAgentsSrc = join16(templateDir, ".claude", "agents");
           if (await pathExists(claudeAgentsSrc)) {
-            await mkdir7(join15(targetDir, ".claude", "agents"), { recursive: true });
+            await mkdir7(join16(targetDir, ".claude", "agents"), { recursive: true });
             await copyDirectoryContents(
               claudeAgentsSrc,
-              join15(targetDir, ".claude", "agents")
+              join16(targetDir, ".claude", "agents")
             );
           }
-          const cursorAgentsSrc = join15(templateDir, ".cursor", "agents");
+          const cursorAgentsSrc = join16(templateDir, ".cursor", "agents");
           if (await pathExists(cursorAgentsSrc)) {
-            await mkdir7(join15(targetDir, ".cursor", "agents"), { recursive: true });
+            await mkdir7(join16(targetDir, ".cursor", "agents"), { recursive: true });
             await copyDirectoryContents(
               cursorAgentsSrc,
-              join15(targetDir, ".cursor", "agents")
+              join16(targetDir, ".cursor", "agents")
             );
           }
           printStatus("Sub-agents installed (.claude/agents, .cursor/agents)");
@@ -2350,30 +2390,30 @@ var init_install = __esm({
         console.log();
         console.log("Installing commands and settings...");
         await copyDirectoryContents(
-          join15(templateDir, ".claude", "commands"),
-          join15(targetDir, ".claude", "commands")
+          join16(templateDir, ".claude", "commands"),
+          join16(targetDir, ".claude", "commands")
         );
         if (!skipConfigOverwrite) {
           await copyFile(
-            join15(templateDir, ".claude", "CLAUDE.md"),
-            join15(targetDir, ".claude", "CLAUDE.md")
+            join16(templateDir, ".claude", "CLAUDE.md"),
+            join16(targetDir, ".claude", "CLAUDE.md")
           );
           await copyFile(
-            join15(templateDir, ".claude", "settings.json"),
-            join15(targetDir, ".claude", "settings.json")
+            join16(templateDir, ".claude", "settings.json"),
+            join16(targetDir, ".claude", "settings.json")
           );
           printStatus(".claude/ (commands, CLAUDE.md, settings)");
         } else {
           printStatus(".claude/ (commands only \u2014 existing config preserved)");
         }
         await copyDirectoryContents(
-          join15(templateDir, ".claude", "commands"),
-          join15(targetDir, ".cursor", "commands")
+          join16(templateDir, ".claude", "commands"),
+          join16(targetDir, ".cursor", "commands")
         );
         if (!skipConfigOverwrite) {
           await copyFile(
-            join15(templateDir, ".cursor", "hooks.json"),
-            join15(targetDir, ".cursor", "hooks.json")
+            join16(templateDir, ".cursor", "hooks.json"),
+            join16(targetDir, ".cursor", "hooks.json")
           );
           printStatus(".cursor/ (commands, hooks)");
         } else {
@@ -2383,8 +2423,8 @@ var init_install = __esm({
         printStatus(".cursor/rules/");
         if (!skipConfigOverwrite) {
           await copyFile(
-            join15(templateDir, "AGENTS.md"),
-            join15(targetDir, "AGENTS.md")
+            join16(templateDir, "AGENTS.md"),
+            join16(targetDir, "AGENTS.md")
           );
           printStatus("AGENTS.md");
         } else {
@@ -2392,44 +2432,46 @@ var init_install = __esm({
         }
         await runManifestGeneration(targetDir);
         await runContextGraphBuild(targetDir);
+        await generateIntegrity(targetDir, version);
+        printStatus("Install integrity recorded");
         console.log();
         console.log("Installing project templates...");
         const userFiles = [
           {
-            src: join15(templateDir, "flydocs", "context", "project.md"),
-            dest: join15(targetDir, "flydocs", "context", "project.md"),
+            src: join16(templateDir, "flydocs", "context", "project.md"),
+            dest: join16(targetDir, "flydocs", "context", "project.md"),
             label: "flydocs/context/project.md"
           },
           {
-            src: join15(templateDir, "flydocs", "knowledge", "INDEX.md"),
-            dest: join15(targetDir, "flydocs", "knowledge", "INDEX.md"),
+            src: join16(templateDir, "flydocs", "knowledge", "INDEX.md"),
+            dest: join16(targetDir, "flydocs", "knowledge", "INDEX.md"),
             label: "flydocs/knowledge/INDEX.md"
           },
           {
-            src: join15(templateDir, "flydocs", "knowledge", "README.md"),
-            dest: join15(targetDir, "flydocs", "knowledge", "README.md"),
+            src: join16(templateDir, "flydocs", "knowledge", "README.md"),
+            dest: join16(targetDir, "flydocs", "knowledge", "README.md"),
             label: "flydocs/knowledge/README.md"
           },
           {
-            src: join15(
+            src: join16(
               templateDir,
               "flydocs",
               "knowledge",
               "product",
               "personas.md"
             ),
-            dest: join15(targetDir, "flydocs", "knowledge", "product", "personas.md"),
+            dest: join16(targetDir, "flydocs", "knowledge", "product", "personas.md"),
             label: "flydocs/knowledge/product/personas.md"
           },
           {
-            src: join15(
+            src: join16(
               templateDir,
               "flydocs",
               "knowledge",
               "product",
               "user-flows.md"
             ),
-            dest: join15(
+            dest: join16(
               targetDir,
               "flydocs",
               "knowledge",
@@ -2439,14 +2481,14 @@ var init_install = __esm({
             label: "flydocs/knowledge/product/user-flows.md"
           },
           {
-            src: join15(
+            src: join16(
               templateDir,
               "flydocs",
               "knowledge",
               "templates",
               "decision.md"
             ),
-            dest: join15(
+            dest: join16(
               targetDir,
               "flydocs",
               "knowledge",
@@ -2456,14 +2498,14 @@ var init_install = __esm({
             label: "flydocs/knowledge/templates/decision.md"
           },
           {
-            src: join15(
+            src: join16(
               templateDir,
               "flydocs",
               "knowledge",
               "templates",
               "feature.md"
             ),
-            dest: join15(
+            dest: join16(
               targetDir,
               "flydocs",
               "knowledge",
@@ -2473,23 +2515,23 @@ var init_install = __esm({
             label: "flydocs/knowledge/templates/feature.md"
           },
           {
-            src: join15(templateDir, "flydocs", "knowledge", "templates", "note.md"),
-            dest: join15(targetDir, "flydocs", "knowledge", "templates", "note.md"),
+            src: join16(templateDir, "flydocs", "knowledge", "templates", "note.md"),
+            dest: join16(targetDir, "flydocs", "knowledge", "templates", "note.md"),
             label: "flydocs/knowledge/templates/note.md"
           },
           {
-            src: join15(templateDir, "flydocs", "design-system", "README.md"),
-            dest: join15(targetDir, "flydocs", "design-system", "README.md"),
+            src: join16(templateDir, "flydocs", "design-system", "README.md"),
+            dest: join16(targetDir, "flydocs", "design-system", "README.md"),
             label: "flydocs/design-system/README.md"
           },
           {
-            src: join15(
+            src: join16(
               templateDir,
               "flydocs",
               "design-system",
               "component-patterns.md"
             ),
-            dest: join15(
+            dest: join16(
               targetDir,
               "flydocs",
               "design-system",
@@ -2498,13 +2540,13 @@ var init_install = __esm({
             label: "flydocs/design-system/component-patterns.md"
           },
           {
-            src: join15(templateDir, "flydocs", "design-system", "token-mapping.md"),
-            dest: join15(targetDir, "flydocs", "design-system", "token-mapping.md"),
+            src: join16(templateDir, "flydocs", "design-system", "token-mapping.md"),
+            dest: join16(targetDir, "flydocs", "design-system", "token-mapping.md"),
             label: "flydocs/design-system/token-mapping.md"
           },
           {
-            src: join15(templateDir, "flydocs", "README.md"),
-            dest: join15(targetDir, "flydocs", "README.md"),
+            src: join16(templateDir, "flydocs", "README.md"),
+            dest: join16(targetDir, "flydocs", "README.md"),
             label: "flydocs/README.md"
           }
         ];
@@ -2518,9 +2560,9 @@ var init_install = __esm({
             }
           }
         }
-        const envExampleSrc = join15(templateDir, ".env.example");
+        const envExampleSrc = join16(templateDir, ".env.example");
         if (await pathExists(envExampleSrc)) {
-          await copyFile(envExampleSrc, join15(targetDir, ".env.example"));
+          await copyFile(envExampleSrc, join16(targetDir, ".env.example"));
           printStatus(".env.example");
         }
         await ensureGitignore(targetDir);
@@ -2698,8 +2740,8 @@ __export(update_exports, {
   default: () => update_default
 });
 import { defineCommand as defineCommand2 } from "citty";
-import { resolve as resolve3, join as join16 } from "path";
-import { mkdir as mkdir8, cp as cp2, readFile as readFile11, readdir as readdir3, rm as rm4 } from "fs/promises";
+import { resolve as resolve3, join as join17 } from "path";
+import { mkdir as mkdir8, cp as cp2, readFile as readFile12, readdir as readdir4, rm as rm4 } from "fs/promises";
 import { select as select2, text as text2, confirm as confirm3, isCancel as isCancel4, cancel as cancel3 } from "@clack/prompts";
 import pc7 from "picocolors";
 var update_default;
@@ -2719,6 +2761,7 @@ var init_update = __esm({
     init_post_install();
     init_update_check();
     init_telemetry();
+    init_integrity();
     update_default = defineCommand2({
       meta: {
         name: "update",
@@ -2806,9 +2849,9 @@ var init_update = __esm({
         }
         targetDir = resolve3(targetDir);
         process.chdir(targetDir);
-        const hasVersion = await pathExists(join16(targetDir, ".flydocs", "version"));
+        const hasVersion = await pathExists(join17(targetDir, ".flydocs", "version"));
         const hasConfig = await pathExists(
-          join16(targetDir, ".flydocs", "config.json")
+          join17(targetDir, ".flydocs", "config.json")
         );
         if (!hasVersion && !hasConfig) {
           printError(`Not a FlyDocs project: ${targetDir}`);
@@ -2819,8 +2862,8 @@ var init_update = __esm({
         console.log();
         let currentVersion = "0.1.0";
         if (hasVersion) {
-          const vContent = await readFile11(
-            join16(targetDir, ".flydocs", "version"),
+          const vContent = await readFile12(
+            join17(targetDir, ".flydocs", "version"),
             "utf-8"
           );
           currentVersion = vContent.trim();
@@ -2854,7 +2897,7 @@ var init_update = __esm({
         });
         console.log(`Updating: v${currentVersion} \u2192 v${version}`);
         console.log();
-        const changelogPath = join16(templateDir, "CHANGELOG.md");
+        const changelogPath = join17(templateDir, "CHANGELOG.md");
         const whatsNew = await getWhatsNew(changelogPath, currentVersion, version);
         if (whatsNew.length > 0) {
           console.log(pc7.cyan("What's new:"));
@@ -2866,29 +2909,29 @@ var init_update = __esm({
         }
         const now = /* @__PURE__ */ new Date();
         const ts = `${now.getFullYear()}${String(now.getMonth() + 1).padStart(2, "0")}${String(now.getDate()).padStart(2, "0")}-${String(now.getHours()).padStart(2, "0")}${String(now.getMinutes()).padStart(2, "0")}${String(now.getSeconds()).padStart(2, "0")}`;
-        const backupDir = join16(targetDir, ".flydocs", `backup-${ts}`);
+        const backupDir = join17(targetDir, ".flydocs", `backup-${ts}`);
         await mkdir8(backupDir, { recursive: true });
         if (hasConfig) {
           await cp2(
-            join16(targetDir, ".flydocs", "config.json"),
-            join16(backupDir, "config.json")
+            join17(targetDir, ".flydocs", "config.json"),
+            join17(backupDir, "config.json")
           );
           printStatus(`Config backed up to .flydocs/backup-${ts}/`);
         }
         try {
-          const flydocsDir = join16(targetDir, ".flydocs");
-          const entries = await readdir3(flydocsDir);
+          const flydocsDir = join17(targetDir, ".flydocs");
+          const entries = await readdir4(flydocsDir);
           const backups = entries.filter((e) => e.startsWith("backup-")).sort();
           if (backups.length > 3) {
             const toRemove = backups.slice(0, backups.length - 3);
             for (const old of toRemove) {
-              await rm4(join16(flydocsDir, old), { recursive: true, force: true });
+              await rm4(join17(flydocsDir, old), { recursive: true, force: true });
             }
           }
         } catch {
         }
         let preserved = {
-          tier: "cloud",
+          tier: "local",
           setupComplete: false,
           workspaceId: null,
           configVersion: void 0,
@@ -2896,6 +2939,7 @@ var init_update = __esm({
           issueLabels: {},
           detectedStack: {},
           skills: {},
+          topology: void 0,
           designSystem: null,
           aiLabor: {}
         };
@@ -2920,20 +2964,17 @@ var init_update = __esm({
         await ensureDirectories(targetDir, effectiveTier);
         console.log("Replacing framework directories...");
         await replaceDirectory(
-          join16(templateDir, ".flydocs", "templates"),
-          join16(targetDir, ".flydocs", "templates")
-        );
-        await replaceDirectory(
-          join16(templateDir, ".flydocs", "hooks"),
-          join16(targetDir, ".flydocs", "hooks")
+          join17(templateDir, ".flydocs", "templates"),
+          join17(targetDir, ".flydocs", "templates")
         );
+        printStatus(".flydocs/templates");
         await replaceDirectory(
-          join16(templateDir, ".flydocs", "scripts"),
-          join16(targetDir, ".flydocs", "scripts")
+          join17(templateDir, ".claude", "hooks"),
+          join17(targetDir, ".claude", "hooks")
         );
-        printStatus(".flydocs/templates, hooks, scripts");
+        printStatus(".claude/hooks");
         const hasExistingAgents = await pathExists(
-          join16(targetDir, ".claude", "agents")
+          join17(targetDir, ".claude", "agents")
         );
         let installAgents;
         if (args.yes) {
@@ -2965,20 +3006,20 @@ var init_update = __esm({
           }
         }
         if (installAgents) {
-          const claudeAgentsSrc = join16(templateDir, ".claude", "agents");
+          const claudeAgentsSrc = join17(templateDir, ".claude", "agents");
           if (await pathExists(claudeAgentsSrc)) {
-            await mkdir8(join16(targetDir, ".claude", "agents"), { recursive: true });
+            await mkdir8(join17(targetDir, ".claude", "agents"), { recursive: true });
             await copyDirectoryContents(
               claudeAgentsSrc,
-              join16(targetDir, ".claude", "agents")
+              join17(targetDir, ".claude", "agents")
             );
           }
-          const cursorAgentsSrc = join16(templateDir, ".cursor", "agents");
+          const cursorAgentsSrc = join17(templateDir, ".cursor", "agents");
           if (await pathExists(cursorAgentsSrc)) {
-            await mkdir8(join16(targetDir, ".cursor", "agents"), { recursive: true });
+            await mkdir8(join17(targetDir, ".cursor", "agents"), { recursive: true });
             await copyDirectoryContents(
               cursorAgentsSrc,
-              join16(targetDir, ".cursor", "agents")
+              join17(targetDir, ".cursor", "agents")
             );
           }
           printStatus(
@@ -2992,47 +3033,47 @@ var init_update = __esm({
         console.log();
         console.log("Replacing framework files...");
         await copyFile(
-          join16(templateDir, ".claude", "CLAUDE.md"),
-          join16(targetDir, ".claude", "CLAUDE.md")
+          join17(templateDir, ".claude", "CLAUDE.md"),
+          join17(targetDir, ".claude", "CLAUDE.md")
         );
         await copyFile(
-          join16(templateDir, ".claude", "settings.json"),
-          join16(targetDir, ".claude", "settings.json")
+          join17(templateDir, ".claude", "settings.json"),
+          join17(targetDir, ".claude", "settings.json")
         );
         printStatus(".claude/CLAUDE.md, settings.json");
         await copyDirectoryContents(
-          join16(templateDir, ".claude", "commands"),
-          join16(targetDir, ".claude", "commands")
+          join17(templateDir, ".claude", "commands"),
+          join17(targetDir, ".claude", "commands")
         );
         await copyDirectoryContents(
-          join16(templateDir, ".claude", "commands"),
-          join16(targetDir, ".cursor", "commands")
+          join17(templateDir, ".claude", "commands"),
+          join17(targetDir, ".cursor", "commands")
         );
         printStatus(".claude/commands, .cursor/commands");
-        const skillsReadmeSrc = join16(templateDir, ".claude", "skills", "README.md");
+        const skillsReadmeSrc = join17(templateDir, ".claude", "skills", "README.md");
         if (await pathExists(skillsReadmeSrc)) {
           await copyFile(
             skillsReadmeSrc,
-            join16(targetDir, ".claude", "skills", "README.md")
+            join17(targetDir, ".claude", "skills", "README.md")
           );
         }
         printStatus(".claude/skills/README.md");
         await copyFile(
-          join16(templateDir, ".cursor", "hooks.json"),
-          join16(targetDir, ".cursor", "hooks.json")
+          join17(templateDir, ".cursor", "hooks.json"),
+          join17(targetDir, ".cursor", "hooks.json")
         );
         printStatus(".cursor/hooks.json");
         await copyFile(
-          join16(templateDir, "AGENTS.md"),
-          join16(targetDir, "AGENTS.md")
+          join17(templateDir, "AGENTS.md"),
+          join17(targetDir, "AGENTS.md")
         );
         printStatus("AGENTS.md");
-        const envExampleSrc = join16(templateDir, ".env.example");
+        const envExampleSrc = join17(templateDir, ".env.example");
         if (await pathExists(envExampleSrc)) {
-          await copyFile(envExampleSrc, join16(targetDir, ".env.example"));
+          await copyFile(envExampleSrc, join17(targetDir, ".env.example"));
           printStatus(".env.example");
         }
-        const knowledgeTemplatesDir = join16(
+        const knowledgeTemplatesDir = join17(
           targetDir,
           "flydocs",
           "knowledge",
@@ -3042,8 +3083,8 @@ var init_update = __esm({
           await mkdir8(knowledgeTemplatesDir, { recursive: true });
         }
         for (const tmpl of ["decision.md", "feature.md", "note.md"]) {
-          const src = join16(templateDir, "flydocs", "knowledge", "templates", tmpl);
-          const dest = join16(knowledgeTemplatesDir, tmpl);
+          const src = join17(templateDir, "flydocs", "knowledge", "templates", tmpl);
+          const dest = join17(knowledgeTemplatesDir, tmpl);
           if (await pathExists(src) && !await pathExists(dest)) {
             await copyFile(src, dest);
           }
@@ -3070,20 +3111,22 @@ var init_update = __esm({
           printWarning("Config merge failed \u2014 config.json preserved as-is");
         }
         await copyFile(
-          join16(templateDir, ".flydocs", "version"),
-          join16(targetDir, ".flydocs", "version")
+          join17(templateDir, ".flydocs", "version"),
+          join17(targetDir, ".flydocs", "version")
         );
         printStatus(`.flydocs/version \u2192 ${version}`);
-        const clSrc = join16(templateDir, "CHANGELOG.md");
+        const clSrc = join17(templateDir, "CHANGELOG.md");
         if (await pathExists(clSrc)) {
-          await copyFile(clSrc, join16(targetDir, ".flydocs", "CHANGELOG.md"));
+          await copyFile(clSrc, join17(targetDir, ".flydocs", "CHANGELOG.md"));
           printStatus(".flydocs/CHANGELOG.md");
         }
-        const mfSrc = join16(templateDir, "manifest.json");
+        const mfSrc = join17(templateDir, "manifest.json");
         if (await pathExists(mfSrc)) {
-          await copyFile(mfSrc, join16(targetDir, ".flydocs", "manifest.json"));
+          await copyFile(mfSrc, join17(targetDir, ".flydocs", "manifest.json"));
           printStatus(".flydocs/manifest.json");
         }
+        await generateIntegrity(targetDir, version);
+        printStatus("Install integrity recorded");
         console.log();
         console.log("Detecting project stack...");
         const stack = await detectStack(targetDir);
@@ -3141,21 +3184,21 @@ __export(uninstall_exports, {
   default: () => uninstall_default
 });
 import { defineCommand as defineCommand3 } from "citty";
-import { resolve as resolve4, join as join17 } from "path";
-import { readdir as readdir4, rm as rm5, rename as rename2 } from "fs/promises";
+import { resolve as resolve4, join as join18 } from "path";
+import { readdir as readdir5, rm as rm5, rename as rename2 } from "fs/promises";
 import { confirm as confirm4, select as select3, isCancel as isCancel5, cancel as cancel4 } from "@clack/prompts";
 import pc8 from "picocolors";
 async function removeOwnedSkills(targetDir) {
-  const skillsDir = join17(targetDir, ".claude", "skills");
+  const skillsDir = join18(targetDir, ".claude", "skills");
   const removed = [];
   if (!await pathExists(skillsDir)) {
     return removed;
   }
   try {
-    const entries = await readdir4(skillsDir);
+    const entries = await readdir5(skillsDir);
     for (const entry of entries) {
       if (entry.startsWith(OWNED_SKILL_PREFIX)) {
-        await rm5(join17(skillsDir, entry), { recursive: true, force: true });
+        await rm5(join18(skillsDir, entry), { recursive: true, force: true });
         removed.push(`.claude/skills/${entry}`);
       }
     }
@@ -3164,16 +3207,16 @@ async function removeOwnedSkills(targetDir) {
   return removed;
 }
 async function removeOwnedCursorRules(targetDir) {
-  const rulesDir = join17(targetDir, ".cursor", "rules");
+  const rulesDir = join18(targetDir, ".cursor", "rules");
   const removed = [];
   if (!await pathExists(rulesDir)) {
     return removed;
   }
   try {
-    const entries = await readdir4(rulesDir);
+    const entries = await readdir5(rulesDir);
     for (const entry of entries) {
       if (entry.startsWith(OWNED_RULE_PREFIX) && entry.endsWith(".mdc")) {
-        await rm5(join17(rulesDir, entry), { force: true });
+        await rm5(join18(rulesDir, entry), { force: true });
         removed.push(`.cursor/rules/${entry}`);
       }
     }
@@ -3183,7 +3226,7 @@ async function removeOwnedCursorRules(targetDir) {
 }
 async function isEmptyDir(dirPath) {
   try {
-    const entries = await readdir4(dirPath);
+    const entries = await readdir5(dirPath);
     return entries.length === 0;
   } catch {
     return false;
@@ -3192,7 +3235,7 @@ async function isEmptyDir(dirPath) {
 async function cleanupEmptyParents(targetDir, dirs) {
   const cleaned = [];
   for (const dir of dirs) {
-    const fullPath = join17(targetDir, dir);
+    const fullPath = join18(targetDir, dir);
     if (await pathExists(fullPath) && await isEmptyDir(fullPath)) {
       await rm5(fullPath, { recursive: true, force: true });
       cleaned.push(dir);
@@ -3213,9 +3256,11 @@ var init_uninstall = __esm({
       [".claude/settings.json", "file"],
       [".claude/agents", "dir"],
       [".claude/commands", "dir"],
+      [".claude/hooks", "dir"],
       [".claude/skills/README.md", "file"],
       [".cursor/hooks.json", "file"],
       [".cursor/agents", "dir"],
+      [".cursor/commands", "dir"],
       [".flydocs", "dir"],
       ["AGENTS.md", "file"],
       [".env.example", "file"]
@@ -3269,8 +3314,8 @@ var init_uninstall = __esm({
           process.exit(1);
         }
         targetDir = resolve4(targetDir);
-        const hasFlydocs = await pathExists(join17(targetDir, ".flydocs"));
-        const hasAgentsMd = await pathExists(join17(targetDir, "AGENTS.md"));
+        const hasFlydocs = await pathExists(join18(targetDir, ".flydocs"));
+        const hasAgentsMd = await pathExists(join18(targetDir, "AGENTS.md"));
         if (!hasFlydocs && !hasAgentsMd) {
           printError(`Not a FlyDocs project: ${targetDir}`);
           printInfo("No .flydocs/ directory or AGENTS.md found.");
@@ -3282,7 +3327,7 @@ var init_uninstall = __esm({
         const removeAll = forceAll || args.all;
         const skipPrompts = forceAll || args.yes;
         let contentAction = "preserve";
-        const hasUserContent = await pathExists(join17(targetDir, "flydocs"));
+        const hasUserContent = await pathExists(join18(targetDir, "flydocs"));
         if (hasUserContent) {
           if (removeAll) {
             contentAction = "remove";
@@ -3365,7 +3410,7 @@ var init_uninstall = __esm({
         const removedRules = await removeOwnedCursorRules(targetDir);
         result.removed.push(...removedRules);
         for (const [relativePath, type] of ALWAYS_REMOVED) {
-          const fullPath = join17(targetDir, relativePath);
+          const fullPath = join18(targetDir, relativePath);
           if (!await pathExists(fullPath)) {
             result.skipped.push(relativePath);
             continue;
@@ -3383,9 +3428,9 @@ var init_uninstall = __esm({
           }
         }
         if (hasUserContent) {
-          const flydocsPath = join17(targetDir, "flydocs");
+          const flydocsPath = join18(targetDir, "flydocs");
           if (contentAction === "archive") {
-            const archivePath = join17(targetDir, "flydocs-archive");
+            const archivePath = join18(targetDir, "flydocs-archive");
             if (await pathExists(archivePath)) {
               await rm5(archivePath, { recursive: true, force: true });
             }
@@ -3626,7 +3671,7 @@ __export(connect_exports, {
 import { defineCommand as defineCommand6 } from "citty";
 import { text as text3, confirm as confirm5, isCancel as isCancel6, cancel as cancel5 } from "@clack/prompts";
 import pc11 from "picocolors";
-import { join as join18 } from "path";
+import { join as join19 } from "path";
 var connect_default;
 var init_connect = __esm({
   "src/commands/connect.ts"() {
@@ -3661,7 +3706,7 @@ var init_connect = __esm({
       },
       async run({ args }) {
         const targetDir = args.path ?? process.cwd();
-        const configPath = join18(targetDir, ".flydocs", "config.json");
+        const configPath = join19(targetDir, ".flydocs", "config.json");
         if (!await pathExists(configPath)) {
           printError("Not a FlyDocs project (.flydocs/config.json not found).");
           console.log(
@@ -3759,27 +3804,9 @@ var init_connect = __esm({
         await writeConfig(targetDir, config);
         printStatus("Config updated to cloud tier");
         if (wasLocal) {
-          try {
-            const templateDir = await resolveTemplatePath(
-              args["local-source"] || void 0
-            );
-            const templateSkillsDir = join18(templateDir, ".claude", "skills");
-            const skillsDir = join18(targetDir, ".claude", "skills");
-            await replaceDirectory(
-              join18(templateSkillsDir, "flydocs-cloud"),
-              join18(skillsDir, "flydocs-cloud")
-            );
-            const { rm: rm6 } = await import("fs/promises");
-            const localSkillDir = join18(skillsDir, "flydocs-local");
-            if (await pathExists(localSkillDir)) {
-              await rm6(localSkillDir, { recursive: true, force: true });
-            }
-            printStatus("Cloud mechanism skill installed");
-          } catch {
-            printInfo(
-              "Could not swap mechanism skills automatically. Run flydocs update to complete."
-            );
-          }
+          printInfo(
+            "Tier changed to cloud. Run flydocs update to refresh skill scripts."
+          );
         }
         console.log();
         console.log(
@@ -3842,9 +3869,7 @@ var init_upgrade = __esm({
             `  ${pc12.green("\u2713")} You're already on the ${pc12.bold("cloud")} tier.`
           );
           console.log();
-          console.log(
-            `  Your issues sync with your provider via the cloud mechanism skill.`
-          );
+          console.log(`  Your issues sync with your provider via the relay API.`);
           console.log(
             `  Run ${pc12.cyan("flydocs connect")} to update your connection settings.`
           );