@flumens/models 0.5.3 → 0.6.0

package/dist/Indicia/Sample.js

@@ -1 +1,687 @@
-"use strict";Object.defineProperty(exports,"__esModule",{value:!0});var e=require("tslib"),t=require("mobx"),r=require("axios"),s=require("lodash"),n=require("@flumens/utils/dist/errors"),a=require("../Model.js"),i=require("./Media.js"),o=require("./Occurrence.js"),u=require("./helpers.js");function c(e){return e&&"object"==typeof e&&"default"in e?e:{default:e}}var d=c(r);function l(e,t){var r,s,n,a;if(null==t?void 0:t.values)e.id=t.values.id,e.samples&&t.samples&&(null===(s=e.samples)||void 0===s||s.forEach((function(e,r){return l(e,t.samples[r])}))),e.occurrences&&t.occurrences&&(null===(n=e.occurrences)||void 0===n||n.forEach((function(e,r){return l(e,t.occurrences[r])}))),e.media&&t.media&&(null===(a=e.media)||void 0===a||a.forEach((function(e,r){return l(e,t.media[r])})));else{if("test"===(null===(r=null===process||void 0===process?void 0:process.env)||void 0===r?void 0:r.NODE_ENV))return;console.warn("Model didn't receive an id from the server")}}var h=function(t){return e.__awaiter(void 0,void 0,void 0,(function(){var r,s,n;return e.__generator(this,(function(a){switch(a.label){case 0:return r=[],t.media?(s=function(t){return e.__awaiter(void 0,void 0,void 0,(function(){var r;return e.__generator(this,(function(e){switch(e.label){case 0:return[4,t.getFormData()];case 1:return r=e.sent(),[2,[t,r]]}}))}))},[4,Promise.all(t.media.map(s))]):[3,2];case 1:n=a.sent(),r.push.apply(r,n),a.label=2;case 2:return t.occurrences?[4,Promise.all(t.occurrences.map(h))]:[3,4];case 3:n=a.sent(),r.push.apply(r,n.flat()),a.label=4;case 4:return t.samples?[4,Promise.all(t.samples.map(h))]:[3,6];case 5:n=a.sent(),r.push.apply(r,n.flat()),a.label=6;case 6:return[2,r]}}))}))};function m(e,t){var r={values:{id:t||-1}};return e.occurrences&&(r.occurrences=e.occurrences.map((function(e){return m(e)}))),e.samples&&(r.samples=e.samples.map((function(e){return m(e)}))),e.media&&(r.media=e.media.map((function(e){return m(e)}))),r}function p(e){try{console.warn(JSON.stringify(e).substring(0,1e5))}catch(e){}}var f=function(r){function a(s){var n=this;void 0===s&&(s={});var i=s.metadata,o=void 0===i?{}:i,c=s.samples,d=void 0===c?[]:c,l=s.occurrences,h=void 0===l?[]:l,m=s.media,p=void 0===m?[]:m,f=s.attrs,v=void 0===f?{}:f,_=e.__rest(s,["metadata","samples","occurrences","media","attrs"]);(n=r.call(this,e.__assign(e.__assign({},_),{attrs:e.__assign({},v)}))||this).remote=t.observable({synchronising:!1,url:null,headers:{},timeout:12e4}),n.validateRemote=u.validateRemoteModel,n.error=t.observable({message:""}),n.debouncedValue=300,n.keys=function(){return e.__assign(e.__assign({},a.keys),function(t){return Object.keys(t).reduce((function(r,s){var n;return e.__assign(e.__assign({},r),((n={})[s]=t[s].remote||t[s],n))}),{})}(n.getSurvey().attrs||{}))},n.requiresRemoteSync=function(){return!n.syncedAt||n.updatedAt>n.syncedAt},n.metadata=t.observable(o),n.samples=t.observable(d),n.occurrences=t.observable(h),n.media=t.observable(p);var y=function(e){return e.parent=n};n.samples.forEach(y),n.occurrences.forEach(y),n.media.forEach(y);var g=function(e){var t;return(null===(t=e.added)||void 0===t?void 0:t.length)?(e.added.forEach(y),n.setupdatedAtTimestamp(Date.now())):e.removedCount&&n.setupdatedAtTimestamp(Date.now()),e};return t.intercept(n.samples,g),t.intercept(n.occurrences,g),t.intercept(n.media,g),n}return e.__extends(a,r),a.fromJSON=function(t,r,s,n){var a,u,c,d,l,h,m;void 0===r&&(r=o.default),void 0===s&&(s=this),void 0===n&&(n=i.default);var p=(null===(a=null==t?void 0:t.attrs)||void 0===a?void 0:a.attrs)?null==t?void 0:t.attrs:t;return new this(e.__assign(e.__assign({},t),{attrs:p.attrs,metadata:p.metadata,createdAt:t.createdAt||(null===(u=t.metadata)||void 0===u?void 0:u.createdOn),updatedAt:t.updatedAt||(null===(c=t.metadata)||void 0===c?void 0:c.updatedOn),syncedAt:t.syncedAt||(null===(d=t.metadata)||void 0===d?void 0:d.syncedOn),samples:null===(l=p.samples)||void 0===l?void 0:l.map((function(e){return s.fromJSON(e,r,s,n)})),occurrences:null===(h=p.occurrences)||void 0===h?void 0:h.map((function(e){return r.fromJSON(e,n)})),media:null===(m=p.media)||void 0===m?void 0:m.map((function(e){return n.fromJSON(e)}))}))},a.prototype.setupdatedAtTimestamp=function(e){var t;r.prototype.setUpdatedAtTimestamp.call(this,e),null===(t=this.parent)||void 0===t||t.setupdatedAtTimestamp(e)},a.prototype.toJSON=function(){var s,n,a,i,o=r.prototype.toJSON.call(this);return this.parent?JSON.parse(JSON.stringify(e.__assign(e.__assign({},o),{metadata:t.toJS(this.metadata)||{},occurrences:this.occurrences.map((function(e){return e.toJSON()}))||[],samples:(null===(a=this.samples)||void 0===a?void 0:a.map((function(e){return e.toJSON()})))||[],media:(null===(i=this.media)||void 0===i?void 0:i.map((function(e){return e.toJSON()})))||[]}))):JSON.parse(JSON.stringify(e.__assign(e.__assign({},o),{attrs:{attrs:o.attrs,metadata:t.toJS(this.metadata)||{},occurrences:this.occurrences.map((function(e){return e.toJSON()}))||[],samples:(null===(s=this.samples)||void 0===s?void 0:s.map((function(e){return e.toJSON()})))||[],media:(null===(n=this.media)||void 0===n?void 0:n.map((function(e){return e.toJSON()})))||[]}})))},a.prototype.getSurvey=function(){return this.survey?this.parent?this.parent.getSurvey().smp||{}:this.survey:{}},a.prototype.save=function(){return e.__awaiter(this,void 0,void 0,(function(){var t;return e.__generator(this,(function(r){switch(r.label){case 0:if(this.attrs.deleted)return[2];if(this.parent)return this.parent.save(),[2];if(!this.store)throw new Error("Trying to sync locally without a store");return t=this.toJSON(),[4,this.store.save(e.__assign(e.__assign({},t),{data:t.attrs}))];case 1:return r.sent(),[2]}}))}))},a.prototype.destroy=function(t){var r;return e.__awaiter(this,void 0,void 0,(function(){var s,n=this;return e.__generator(this,(function(e){switch(e.label){case 0:return s=function(){return Promise.all([Promise.all(n.media.map((function(e){return e.destroy(!0)}))),Promise.all(n.occurrences.map((function(e){return e.destroy(!0)})))])},this.parent?(this.parent.samples.remove(this),[4,s()]):[3,2];case 1:return e.sent(),t?[2]:(this.parent.save(),[2]);case 2:if(!this.store)throw new Error("Trying to sync locally without a store");return[4,this.store.delete(this.cid)];case 3:return e.sent(),null===(r=this.collection)||void 0===r||r.remove(this),[4,s()];case 4:return e.sent(),this.attrs.deleted=!0,[2]}}))}))},a.prototype.sync=function(){return e.__awaiter(this,void 0,void 0,(function(){return e.__generator(this,(function(e){return[2,this.parent?this.parent.sync():r.prototype.sync.call(this)]}))}))},a.prototype.saveRemote=function(){return e.__awaiter(this,void 0,void 0,(function(){var t,r,s,n,a;return e.__generator(this,(function(e){switch(e.label){case 0:if(!this.remote.url)throw new Error('A "remote" property is not configured.');e.label=1;case 1:return e.trys.push([1,4,,5]),this.remote.synchronising=!0,[4,this.uploadMedia()];case 2:return t=e.sent(),r=this.getSubmission(t),[4,this.postRemote(r)];case 3:return s=e.sent(),this.remote.synchronising=!1,l(this,s),n=(new Date).getTime(),this.updatedAt=n,this.syncedAt=n,this.save(),[3,5];case 4:throw a=e.sent(),this.remote.synchronising=!1,a;case 5:return[2]}}))}))},a.prototype.postRemote=function(t){var r,s,a;return e.__awaiter(this,void 0,void 0,(function(){var i,o,c,l,h;return e.__generator(this,(function(e){switch(e.label){case 0:return i=this.remote.url,"function"!=typeof this.remote.headers?[3,2]:[4,this.remote.headers()];case 1:return c=e.sent(),[3,3];case 2:c=this.remote.headers,e.label=3;case 3:o=c,e.label=4;case 4:return e.trys.push([4,6,,7]),[4,d.default.post("".concat(i,"/samples"),t,{headers:o,timeout:12e4})];case 5:return[2,e.sent().data];case 6:if(l=e.sent(),409===(h=l).status&&(null===(r=h.response)||void 0===r?void 0:r.data.duplicate_of))return[2,m(this,h.response.data.duplicate_of.id)];if(n.isAxiosNetworkError(h))throw new n.HandledError("Request aborted because of a network issue (timeout or similar).");if(400===h.status)throw p(t),new Error(u.getErrorMessageFromObject(null===(a=null===(s=h.response)||void 0===s?void 0:s.data)||void 0===a?void 0:a.message));throw new Error(h.message);case 7:return[2]}}))}))},a.prototype.fetchRemote=function(){return e.__awaiter(this,void 0,void 0,(function(){return e.__generator(this,(function(e){throw new Error("Not implemented.")}))}))},a.prototype.updateRemote=function(){return e.__awaiter(this,void 0,void 0,(function(){var t,r,s,n;return e.__generator(this,(function(e){switch(e.label){case 0:if(!this.remote.url)throw new Error('A "remote" property is not configured.');e.label=1;case 1:return e.trys.push([1,3,,4]),this.remote.synchronising=!0,t={},r=this.getSubmission(t),[4,this.putRemote(this.id,r)];case 2:return l(this,e.sent()),s=(new Date).getTime(),this.updatedAt=s,this.syncedAt=s,this.save(),this.remote.synchronising=!1,[3,4];case 3:throw n=e.sent(),this.remote.synchronising=!1,n;case 4:return[2]}}))}))},a.prototype.putRemote=function(t,r){var s,a;return e.__awaiter(this,void 0,void 0,(function(){var i,o,c,l,h;return e.__generator(this,(function(e){switch(e.label){case 0:return i=this.remote.url,"function"!=typeof this.remote.headers?[3,2]:[4,this.remote.headers()];case 1:return c=e.sent(),[3,3];case 2:c=this.remote.headers,e.label=3;case 3:o=c,e.label=4;case 4:return e.trys.push([4,6,,7]),[4,d.default.put("".concat(i,"/samples/").concat(t),r,{headers:o,timeout:12e4})];case 5:return[2,e.sent().data];case 6:if(l=e.sent(),h=l,n.isAxiosNetworkError(h))throw new n.HandledError("Request aborted because of a network issue (timeout or similar).");if(400===h.status)throw p(r),new Error(u.getErrorMessageFromObject(null===(a=null===(s=h.response)||void 0===s?void 0:s.data)||void 0===a?void 0:a.message));throw new Error(h.message);case 7:return[2]}}))}))},a.prototype.uploadMedia=function(){return e.__awaiter(this,void 0,void 0,(function(){var t,r,s,a,i,o,u,c,l=this;return e.__generator(this,(function(m){switch(m.label){case 0:return t={},[4,h(this)];case 1:if(r=m.sent(),!r.length)return[2,t];s=function(t){return e.__awaiter(l,void 0,void 0,(function(){var r,s,a,i;return e.__generator(this,(function(e){switch(e.label){case 0:return r=this.remote.url,"function"!=typeof this.remote.headers?[3,2]:[4,this.remote.headers()];case 1:return a=e.sent(),[3,3];case 2:a=this.remote.headers,e.label=3;case 3:s=a,e.label=4;case 4:return e.trys.push([4,6,,7]),[4,d.default.post("".concat(r,"/media-queue"),t,{headers:s,timeout:12e4})];case 5:return[2,e.sent().data];case 6:if("timeout"===(i=e.sent()).message)throw new n.HandledError("Request aborted because of a network issue (timeout or similar).");throw i;case 7:return[2]}}))}))},a=[],i=Date.now()-432e5,r.forEach((function(e){var r=e[0];r.syncedAt>i&&r.attrs.queued?t[r.cid]={name:r.attrs.queued}:a.push(e)})),o=5,u=function(r){var n,i,u,c;return e.__generator(this,(function(d){switch(d.label){case 0:return n=a.slice(r,r+o),i=new FormData,n.forEach((function(e){var t=e[1];return i.append.apply(i,t)})),[4,s(i)];case 1:return u=d.sent(),c=(new Date).getTime(),n.forEach((function(e){var t=e[0];t.syncedAt=c,t.attrs.queued=u[t.cid].name})),t=e.__assign(e.__assign({},t),u),[2]}}))},c=0,m.label=2;case 2:return c<a.length?[5,u(c)]:[3,5];case 3:m.sent(),m.label=4;case 4:return c+=o,[3,2];case 5:return[2,t]}}))}))},a.prototype.getSubmission=function(t){var r=this;void 0===t&&(t={});var n="function"==typeof this.keys?this.keys():this.keys,i=e.__assign(e.__assign({},a.keys),n),o={values:{external_key:this.cid},media:[],samples:[],occurrences:[]};this.id&&(o.values.id=this.id);var u=function(e,t){var s=i[e].values;if(!s)return t;if("function"==typeof s)return s(t,o,r);if(t instanceof Array)return t.map((function(t){return u(e,t)}));if(s instanceof Array){var n=s.find((function(e){return e.value===t}));if(!n||!n.id)throw new Error('A "'.concat(e,'" attribute "').concat(t,'" value could not be mapped to a remote database field.'));return n.id}return s[t]};Object.keys(this.attrs).forEach((function(e){var t=r.attrs[e],n=function(e){return null==e};if(!n(t)){if(!i[e])return e=e.includes("smpAttr:")?e:s.snakeCase(e),void(o.values[e]=t);if(!n(t=u(e,t))){var a=i[e].id||e,c=Number.isNaN(Number(a))?a:"smpAttr:".concat(a);c=c.includes("smpAttr:")?c:s.snakeCase(c),o.values[c]=t}}})),this.samples.forEach((function(e){r.attrs.training&&(e.attrs.training=r.attrs.training);var s=e.getSubmission(t);s&&o.samples.push(s)})),this.occurrences.forEach((function(e){r.attrs.training&&(e.attrs.training=r.attrs.training);var s=e.getSubmission(t);s&&o.occurrences.push(s)})),this.media.forEach((function(e){var r=e.getSubmission(t);r&&o.media.push(r)}));var c=this.getSurvey();return c.modifySubmission?c.modifySubmission(o,this):o},a.prototype.isUploaded=function(){return this.parent?this.parent.isUploaded():!!this.syncedAt},a.prototype.isDisabled=function(){return this.isUploaded()},a.keys={location:{id:"entered_sref"},location_type:{id:"entered_sref_system",values:{british:"OSGB",irish:"OSIE",channel:"utm30ed50",latlon:4326}},group:{id:"group_id"},training:{id:"training",values:u.boolToWarehouseValue},deleted:{id:"deleted",values:u.boolToWarehouseValue}},a}(a.default);exports.default=f,exports.getMediaFormData=h;
+'use strict';
+
+Object.defineProperty(exports, '__esModule', { value: true });
+
+var tslib = require('tslib');
+var mobx = require('mobx');
+var axios = require('axios');
+var lodash = require('lodash');
+var utils = require('@flumens/utils');
+var Model = require('../Model.js');
+var Media = require('./Media.js');
+var Occurrence = require('./Occurrence.js');
+var helpers = require('./helpers.js');
+
+function _interopDefaultLegacy (e) { return e && typeof e === 'object' && 'default' in e ? e : { 'default': e }; }
+
+var axios__default = /*#__PURE__*/_interopDefaultLegacy(axios);
+
+function setNewRemoteID(model, responseData) {
+    var _a, _b, _c, _d;
+    if (!(responseData === null || responseData === void 0 ? void 0 : responseData.values)) {
+        if (((_a = process === null || process === void 0 ? void 0 : process.env) === null || _a === void 0 ? void 0 : _a.NODE_ENV) === 'test')
+            return;
+        console.warn("Model didn't receive an id from the server");
+        return;
+    }
+    // eslint-disable-next-line no-param-reassign
+    model.id = responseData.values.id;
+    // do that for all submodels
+    if (model.samples && responseData.samples) {
+        (_b = model.samples) === null || _b === void 0 ? void 0 : _b.forEach(function (subModel, index) {
+            return setNewRemoteID(subModel, responseData.samples[index]);
+        });
+    }
+    if (model.occurrences && responseData.occurrences) {
+        (_c = model.occurrences) === null || _c === void 0 ? void 0 : _c.forEach(function (subModel, index) {
+            return setNewRemoteID(subModel, responseData.occurrences[index]);
+        });
+    }
+    if (model.media && responseData.media) {
+        (_d = model.media) === null || _d === void 0 ? void 0 : _d.forEach(function (subModel, index) {
+            return setNewRemoteID(subModel, responseData.media[index]);
+        });
+    }
+}
+var getMediaFormData = function (model) { return tslib.__awaiter(void 0, void 0, void 0, function () {
+    var formDataArgs, getFormData, formData, formData, formData;
+    return tslib.__generator(this, function (_a) {
+        switch (_a.label) {
+            case 0:
+                formDataArgs = [];
+                if (!model.media) return [3 /*break*/, 2];
+                getFormData = function (m) { return tslib.__awaiter(void 0, void 0, void 0, function () {
+                    var formData;
+                    return tslib.__generator(this, function (_a) {
+                        switch (_a.label) {
+                            case 0: return [4 /*yield*/, m.getFormData()];
+                            case 1:
+                                formData = _a.sent();
+                                return [2 /*return*/, [m, formData]];
+                        }
+                    });
+                }); };
+                return [4 /*yield*/, Promise.all(model.media.map(getFormData))];
+            case 1:
+                formData = _a.sent();
+                formDataArgs.push.apply(formDataArgs, formData);
+                _a.label = 2;
+            case 2:
+                if (!model.occurrences) return [3 /*break*/, 4];
+                return [4 /*yield*/, Promise.all(model.occurrences.map(getMediaFormData))];
+            case 3:
+                formData = _a.sent();
+                formDataArgs.push.apply(formDataArgs, formData.flat());
+                _a.label = 4;
+            case 4:
+                if (!model.samples) return [3 /*break*/, 6];
+                return [4 /*yield*/, Promise.all(model.samples.map(getMediaFormData))];
+            case 5:
+                formData = _a.sent();
+                formDataArgs.push.apply(formDataArgs, formData.flat());
+                _a.label = 6;
+            case 6: return [2 /*return*/, formDataArgs];
+        }
+    });
+}); };
+function handleDuplicates(model, existingId) {
+    var fullResponse = {
+        values: {
+            id: existingId || -1,
+        },
+    };
+    if (model.occurrences) {
+        fullResponse.occurrences = model.occurrences.map(function (m) {
+            return handleDuplicates(m);
+        });
+    }
+    if (model.samples) {
+        fullResponse.samples = model.samples.map(function (m) {
+            return handleDuplicates(m);
+        });
+    }
+    if (model.media) {
+        fullResponse.media = model.media.map(function (m) {
+            return handleDuplicates(m);
+        });
+    }
+    return fullResponse;
+}
+function logTruncatedJSON(payload) {
+    try {
+        var MAX_PAYLOAD = 200000; // kb. https://develop.sentry.dev/sdk/event-payloads/
+        console.warn(JSON.stringify(payload).substring(0, MAX_PAYLOAD / 2));
+    }
+    catch (e) {
+        // do nothing
+    }
+}
+var Sample = /** @class */ (function (_super) {
+    tslib.__extends(Sample, _super);
+    function Sample(_a) {
+        if (_a === void 0) { _a = {}; }
+        var _this = this;
+        var _b = _a.metadata, metadata = _b === void 0 ? {} : _b, _c = _a.samples, samples = _c === void 0 ? [] : _c, _d = _a.occurrences, occurrences = _d === void 0 ? [] : _d, _e = _a.media, media = _e === void 0 ? [] : _e, _f = _a.attrs, attrs = _f === void 0 ? {} : _f, options = tslib.__rest(_a, ["metadata", "samples", "occurrences", "media", "attrs"]);
+        _this = _super.call(this, tslib.__assign(tslib.__assign({}, options), { attrs: tslib.__assign({}, attrs) })) || this;
+        _this.remote = mobx.observable({
+            synchronising: false,
+            url: null, // must be set up for remote sync
+            headers: {}, // auth and other headers
+            timeout: 120000, // 120s
+        });
+        _this.validateRemote = helpers.validateRemoteModel;
+        _this.error = mobx.observable({ message: '' });
+        _this.debouncedValue = 300;
+        _this.keys = function () {
+            var getRemoteProps = function (attrs) {
+                var extractRemoteIfExists = function (agg, key) {
+                    var _a;
+                    return (tslib.__assign(tslib.__assign({}, agg), (_a = {}, _a[key] = attrs[key].remote || attrs[key], _a)));
+                };
+                return Object.keys(attrs).reduce(extractRemoteIfExists, {});
+            };
+            return tslib.__assign(tslib.__assign({}, Sample.keys), getRemoteProps(_this.getSurvey().attrs || {}));
+        };
+        _this.requiresRemoteSync = function () { return !_this.syncedAt || _this.updatedAt > _this.syncedAt; };
+        _this.metadata = mobx.observable(metadata);
+        _this.samples = mobx.observable(samples);
+        _this.occurrences = mobx.observable(occurrences);
+        _this.media = mobx.observable(media);
+        // eslint-disable-next-line no-param-reassign, no-return-assign
+        var attachParent = function (model) { return (model.parent = _this); };
+        _this.samples.forEach(attachParent);
+        _this.occurrences.forEach(attachParent);
+        _this.media.forEach(attachParent);
+        var onAddedSetParentAndUpdateTime = function (change) {
+            var _a;
+            if ((_a = change.added) === null || _a === void 0 ? void 0 : _a.length) {
+                change.added.forEach(attachParent);
+                _this.setupdatedAtTimestamp(Date.now());
+            }
+            else if (change.removedCount) {
+                _this.setupdatedAtTimestamp(Date.now());
+            }
+            return change;
+        };
+        mobx.intercept(_this.samples, onAddedSetParentAndUpdateTime);
+        mobx.intercept(_this.occurrences, onAddedSetParentAndUpdateTime);
+        mobx.intercept(_this.media, onAddedSetParentAndUpdateTime);
+        return _this;
+    }
+    Sample.fromJSON = function (jsonProp, OccurrenceClass, Sample, // eslint-disable-line
+    MediaClass) {
+        var _a, _b, _c, _d, _e, _f, _g;
+        if (OccurrenceClass === void 0) { OccurrenceClass = Occurrence["default"]; }
+        if (Sample === void 0) { Sample = this; }
+        if (MediaClass === void 0) { MediaClass = Media["default"]; }
+        var json = ((_a = jsonProp === null || jsonProp === void 0 ? void 0 : jsonProp.attrs) === null || _a === void 0 ? void 0 : _a.attrs) ? jsonProp === null || jsonProp === void 0 ? void 0 : jsonProp.attrs : jsonProp;
+        var sample = new this(tslib.__assign(tslib.__assign({}, jsonProp), { attrs: json.attrs, metadata: json.metadata, createdAt: jsonProp.createdAt || ((_b = jsonProp.metadata) === null || _b === void 0 ? void 0 : _b.createdOn), updatedAt: jsonProp.updatedAt || ((_c = jsonProp.metadata) === null || _c === void 0 ? void 0 : _c.updatedOn), syncedAt: jsonProp.syncedAt || ((_d = jsonProp.metadata) === null || _d === void 0 ? void 0 : _d.syncedOn), samples: (_e = json.samples) === null || _e === void 0 ? void 0 : _e.map(function (mJson) {
+                return Sample.fromJSON(mJson, OccurrenceClass, Sample, MediaClass);
+            }), occurrences: (_f = json.occurrences) === null || _f === void 0 ? void 0 : _f.map(function (mJson) {
+                return OccurrenceClass.fromJSON(mJson, MediaClass);
+            }), media: (_g = json.media) === null || _g === void 0 ? void 0 : _g.map(function (mJson) { return MediaClass.fromJSON(mJson); }) }));
+        return sample;
+    };
+    Sample.prototype.setupdatedAtTimestamp = function (newUpdatedAt) {
+        var _a;
+        _super.prototype.setUpdatedAtTimestamp.call(this, newUpdatedAt);
+        (_a = this.parent) === null || _a === void 0 ? void 0 : _a.setupdatedAtTimestamp(newUpdatedAt);
+    };
+    /**
+     * Returns a clean (no observables) JSON representation of the model.
+     */
+    Sample.prototype.toJSON = function () {
+        var _a, _b, _c, _d;
+        var json = _super.prototype.toJSON.call(this);
+        if (!this.parent) {
+            return JSON.parse(JSON.stringify(tslib.__assign(tslib.__assign({}, json), { attrs: {
+                    attrs: json.attrs,
+                    metadata: mobx.toJS(this.metadata) || {},
+                    occurrences: this.occurrences.map(function (model) { return model.toJSON(); }) || [],
+                    samples: ((_a = this.samples) === null || _a === void 0 ? void 0 : _a.map(function (model) { return model.toJSON(); })) || [],
+                    media: ((_b = this.media) === null || _b === void 0 ? void 0 : _b.map(function (model) { return model.toJSON(); })) || [],
+                } })));
+        }
+        return JSON.parse(JSON.stringify(tslib.__assign(tslib.__assign({}, json), { metadata: mobx.toJS(this.metadata) || {}, occurrences: this.occurrences.map(function (model) { return model.toJSON(); }) || [], samples: ((_c = this.samples) === null || _c === void 0 ? void 0 : _c.map(function (model) { return model.toJSON(); })) || [], media: ((_d = this.media) === null || _d === void 0 ? void 0 : _d.map(function (model) { return model.toJSON(); })) || [] })));
+    };
+    Sample.prototype.getSurvey = function () {
+        if (!this.survey)
+            return {};
+        if (this.parent)
+            return this.parent.getSurvey().smp || {};
+        return this.survey;
+    };
+    /**
+     * Save the model to the offline store.
+     */
+    Sample.prototype.save = function () {
+        return tslib.__awaiter(this, void 0, void 0, function () {
+            var json;
+            return tslib.__generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0:
+                        if (this.attrs.deleted)
+                            return [2 /*return*/]; // we don't want to store deleted samples yet
+                        if (this.parent) {
+                            this.parent.save();
+                            return [2 /*return*/];
+                        }
+                        if (!this.store) {
+                            throw new Error('Trying to sync locally without a store');
+                        }
+                        json = this.toJSON();
+                        return [4 /*yield*/, this.store.save(tslib.__assign(tslib.__assign({}, json), { data: json.attrs }))];
+                    case 1:
+                        _a.sent();
+                        return [2 /*return*/];
+                }
+            });
+        });
+    };
+    /**
+     * Destroy the model and remove from the offline store.
+     */
+    Sample.prototype.destroy = function (silent) {
+        return tslib.__awaiter(this, void 0, void 0, function () {
+            var destroySubModels;
+            var _this = this;
+            var _a;
+            return tslib.__generator(this, function (_b) {
+                switch (_b.label) {
+                    case 0:
+                        destroySubModels = function () {
+                            return Promise.all([
+                                Promise.all(_this.media.map(function (media) { return media.destroy(true); })),
+                                Promise.all(_this.occurrences.map(function (occ) { return occ.destroy(true); })),
+                            ]);
+                        };
+                        if (!this.parent) return [3 /*break*/, 2];
+                        this.parent.samples.remove(this);
+                        return [4 /*yield*/, destroySubModels()];
+                    case 1:
+                        _b.sent();
+                        if (silent)
+                            return [2 /*return*/];
+                        this.parent.save();
+                        return [2 /*return*/];
+                    case 2:
+                        if (!this.store) {
+                            throw new Error('Trying to sync locally without a store');
+                        }
+                        return [4 /*yield*/, this.store.delete(this.cid)];
+                    case 3:
+                        _b.sent();
+                        (_a = this.collection) === null || _a === void 0 ? void 0 : _a.remove(this);
+                        return [4 /*yield*/, destroySubModels()];
+                    case 4:
+                        _b.sent();
+                        this.attrs.deleted = true;
+                        return [2 /*return*/];
+                }
+            });
+        });
+    };
+    Sample.prototype.sync = function () {
+        return tslib.__awaiter(this, void 0, void 0, function () {
+            return tslib.__generator(this, function (_a) {
+                return [2 /*return*/, this.parent ? this.parent.sync() : _super.prototype.sync.call(this)];
+            });
+        });
+    };
+    Sample.prototype.saveRemote = function () {
+        return tslib.__awaiter(this, void 0, void 0, function () {
+            var warehouseMediaNames, submission, remoteResponse, timeNow, e_1;
+            return tslib.__generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0:
+                        if (!this.remote.url) {
+                            throw new Error('A "remote" property is not configured.');
+                        }
+                        _a.label = 1;
+                    case 1:
+                        _a.trys.push([1, 4, , 5]);
+                        this.remote.synchronising = true;
+                        return [4 /*yield*/, this.uploadMedia()];
+                    case 2:
+                        warehouseMediaNames = _a.sent();
+                        submission = this.getSubmission(warehouseMediaNames);
+                        return [4 /*yield*/, this.postRemote(submission)];
+                    case 3:
+                        remoteResponse = _a.sent();
+                        this.remote.synchronising = false;
+                        // update the model and occurrences with new remote IDs
+                        setNewRemoteID(this, remoteResponse);
+                        timeNow = new Date().getTime();
+                        // TODO: use server times
+                        this.updatedAt = timeNow;
+                        this.syncedAt = timeNow;
+                        this.save();
+                        return [3 /*break*/, 5];
+                    case 4:
+                        e_1 = _a.sent();
+                        this.remote.synchronising = false;
+                        throw e_1;
+                    case 5: return [2 /*return*/];
+                }
+            });
+        });
+    };
+    Sample.prototype.postRemote = function (data) {
+        return tslib.__awaiter(this, void 0, void 0, function () {
+            var url, headers, _a, res, _1, e;
+            var _b, _c, _d;
+            return tslib.__generator(this, function (_e) {
+                switch (_e.label) {
+                    case 0:
+                        url = this.remote.url;
+                        if (!(typeof this.remote.headers === 'function')) return [3 /*break*/, 2];
+                        return [4 /*yield*/, this.remote.headers()];
+                    case 1:
+                        _a = _e.sent();
+                        return [3 /*break*/, 3];
+                    case 2:
+                        _a = this.remote.headers;
+                        _e.label = 3;
+                    case 3:
+                        headers = _a;
+                        _e.label = 4;
+                    case 4:
+                        _e.trys.push([4, 6, , 7]);
+                        return [4 /*yield*/, axios__default["default"].post("".concat(url, "/samples"), data, {
+                                headers: headers,
+                                timeout: 120000,
+                            })];
+                    case 5:
+                        res = _e.sent();
+                        return [2 /*return*/, res.data];
+                    case 6:
+                        _1 = _e.sent();
+                        e = _1;
+                        if (e.status === 409 && ((_b = e.response) === null || _b === void 0 ? void 0 : _b.data.duplicate_of)) {
+                            // TODO: we're doing updates so must handle sub-model IDs too
+                            return [2 /*return*/, handleDuplicates(this, e.response.data.duplicate_of.id)];
+                        }
+                        if (utils.isAxiosNetworkError(e)) {
+                            throw new utils.HandledError('Request aborted because of a network issue (timeout or similar).');
+                        }
+                        if (e.status === 400) {
+                            logTruncatedJSON(data);
+                            throw new Error(helpers.getErrorMessageFromObject((_d = (_c = e.response) === null || _c === void 0 ? void 0 : _c.data) === null || _d === void 0 ? void 0 : _d.message));
+                        }
+                        throw new Error(e.message);
+                    case 7: return [2 /*return*/];
+                }
+            });
+        });
+    };
+    Sample.prototype.fetchRemote = function () {
+        return tslib.__awaiter(this, void 0, void 0, function () {
+            return tslib.__generator(this, function (_a) {
+                throw new Error('Not implemented.');
+            });
+        });
+    };
+    Sample.prototype.updateRemote = function () {
+        return tslib.__awaiter(this, void 0, void 0, function () {
+            var warehouseMediaNames, submission, remoteResponse, timeNow, e_2;
+            return tslib.__generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0:
+                        if (!this.remote.url) {
+                            throw new Error('A "remote" property is not configured.');
+                        }
+                        _a.label = 1;
+                    case 1:
+                        _a.trys.push([1, 3, , 4]);
+                        this.remote.synchronising = true;
+                        warehouseMediaNames = {};
+                        submission = this.getSubmission(warehouseMediaNames);
+                        return [4 /*yield*/, this.putRemote(this.id, submission)];
+                    case 2:
+                        remoteResponse = _a.sent();
+                        // update the model and occurrences with new remote IDs
+                        setNewRemoteID(this, remoteResponse);
+                        timeNow = new Date().getTime();
+                        // TODO: use server times
+                        this.updatedAt = timeNow;
+                        this.syncedAt = timeNow;
+                        this.save();
+                        this.remote.synchronising = false;
+                        return [3 /*break*/, 4];
+                    case 3:
+                        e_2 = _a.sent();
+                        this.remote.synchronising = false;
+                        throw e_2;
+                    case 4: return [2 /*return*/];
+                }
+            });
+        });
+    };
+    Sample.prototype.putRemote = function (sampleId, data) {
+        return tslib.__awaiter(this, void 0, void 0, function () {
+            var url, headers, _a, res, _2, e;
+            var _b, _c;
+            return tslib.__generator(this, function (_d) {
+                switch (_d.label) {
+                    case 0:
+                        url = this.remote.url;
+                        if (!(typeof this.remote.headers === 'function')) return [3 /*break*/, 2];
+                        return [4 /*yield*/, this.remote.headers()];
+                    case 1:
+                        _a = _d.sent();
+                        return [3 /*break*/, 3];
+                    case 2:
+                        _a = this.remote.headers;
+                        _d.label = 3;
+                    case 3:
+                        headers = _a;
+                        _d.label = 4;
+                    case 4:
+                        _d.trys.push([4, 6, , 7]);
+                        return [4 /*yield*/, axios__default["default"].put("".concat(url, "/samples/").concat(sampleId), data, {
+                                headers: headers,
+                                timeout: 120000,
+                            })];
+                    case 5:
+                        res = _d.sent();
+                        return [2 /*return*/, res.data];
+                    case 6:
+                        _2 = _d.sent();
+                        e = _2;
+                        if (utils.isAxiosNetworkError(e)) {
+                            throw new utils.HandledError('Request aborted because of a network issue (timeout or similar).');
+                        }
+                        if (e.status === 400) {
+                            logTruncatedJSON(data);
+                            throw new Error(helpers.getErrorMessageFromObject((_c = (_b = e.response) === null || _b === void 0 ? void 0 : _b.data) === null || _c === void 0 ? void 0 : _c.message));
+                        }
+                        throw new Error(e.message);
+                    case 7: return [2 /*return*/];
+                }
+            });
+        });
+    };
+    Sample.prototype.uploadMedia = function () {
+        return tslib.__awaiter(this, void 0, void 0, function () {
+            var warehouseMediaNames, media, hasPhotos, upload, mediaNotInRemote, twelveHrsAgo, chunk, _loop_1, index;
+            var _this = this;
+            return tslib.__generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0:
+                        warehouseMediaNames = {};
+                        return [4 /*yield*/, getMediaFormData(this)];
+                    case 1:
+                        media = _a.sent();
+                        hasPhotos = media.length;
+                        if (!hasPhotos)
+                            return [2 /*return*/, warehouseMediaNames];
+                        upload = function (data) { return tslib.__awaiter(_this, void 0, void 0, function () {
+                            var url, headers, _a, res, e_3;
+                            return tslib.__generator(this, function (_b) {
+                                switch (_b.label) {
+                                    case 0:
+                                        url = this.remote.url;
+                                        if (!(typeof this.remote.headers === 'function')) return [3 /*break*/, 2];
+                                        return [4 /*yield*/, this.remote.headers()];
+                                    case 1:
+                                        _a = _b.sent();
+                                        return [3 /*break*/, 3];
+                                    case 2:
+                                        _a = this.remote.headers;
+                                        _b.label = 3;
+                                    case 3:
+                                        headers = _a;
+                                        _b.label = 4;
+                                    case 4:
+                                        _b.trys.push([4, 6, , 7]);
+                                        return [4 /*yield*/, axios__default["default"].post("".concat(url, "/media-queue"), data, {
+                                                headers: headers,
+                                                timeout: 120000,
+                                            })];
+                                    case 5:
+                                        res = _b.sent();
+                                        return [2 /*return*/, res.data];
+                                    case 6:
+                                        e_3 = _b.sent();
+                                        if (e_3.message === 'timeout') {
+                                            throw new utils.HandledError('Request aborted because of a network issue (timeout or similar).');
+                                        }
+                                        throw e_3;
+                                    case 7: return [2 /*return*/];
+                                }
+                            });
+                        }); };
+                        mediaNotInRemote = [];
+                        twelveHrsAgo = Date.now() - 1000 * 60 * 60 * 12;
+                        media.forEach(function (m) {
+                            var model = m[0];
+                            if (model.syncedAt > twelveHrsAgo && model.attrs.queued) {
+                                warehouseMediaNames[model.cid] = { name: model.attrs.queued };
+                                return;
+                            }
+                            mediaNotInRemote.push(m);
+                        });
+                        chunk = 5;
+                        _loop_1 = function (index) {
+                            var mediaChunkToUpload, data, ids, now;
+                            return tslib.__generator(this, function (_b) {
+                                switch (_b.label) {
+                                    case 0:
+                                        mediaChunkToUpload = mediaNotInRemote.slice(index, index + chunk);
+                                        data = new FormData();
+                                        mediaChunkToUpload.forEach(function (_a) {
+                                            var formData = _a[1];
+                                            return data.append.apply(data, formData);
+                                        });
+                                        return [4 /*yield*/, upload(data)];
+                                    case 1:
+                                        ids = _b.sent();
+                                        now = new Date().getTime();
+                                        mediaChunkToUpload.forEach(function (_a) {
+                                            var m = _a[0];
+                                            m.syncedAt = now;
+                                            m.attrs.queued = ids[m.cid].name;
+                                        });
+                                        warehouseMediaNames = tslib.__assign(tslib.__assign({}, warehouseMediaNames), ids);
+                                        return [2 /*return*/];
+                                }
+                            });
+                        };
+                        index = 0;
+                        _a.label = 2;
+                    case 2:
+                        if (!(index < mediaNotInRemote.length)) return [3 /*break*/, 5];
+                        return [5 /*yield**/, _loop_1(index)];
+                    case 3:
+                        _a.sent();
+                        _a.label = 4;
+                    case 4:
+                        index += chunk;
+                        return [3 /*break*/, 2];
+                    case 5: return [2 /*return*/, warehouseMediaNames];
+                }
+            });
+        });
+    };
+    Sample.prototype.getSubmission = function (warehouseMediaNames) {
+        var _this = this;
+        if (warehouseMediaNames === void 0) { warehouseMediaNames = {}; }
+        var sampleKeys = typeof this.keys === 'function' ? this.keys() : this.keys;
+        var keys = tslib.__assign(tslib.__assign({}, Sample.keys), sampleKeys); // warehouse keys/values to transform
+        var submission = {
+            values: {
+                external_key: this.cid,
+            },
+            media: [],
+            samples: [],
+            occurrences: [],
+        };
+        if (this.id) {
+            submission.values.id = this.id;
+        }
+        var mapValue = function (attr, value) {
+            var valuesMapping = keys[attr].values;
+            if (!valuesMapping) {
+                return value;
+            }
+            if (typeof valuesMapping === 'function') {
+                return valuesMapping(value, submission, _this);
+            }
+            if (value instanceof Array) {
+                return value.map(function (v) { return mapValue(attr, v); });
+            }
+            if (valuesMapping instanceof Array) {
+                var mapping = valuesMapping.find(function (_a) {
+                    var val = _a.value;
+                    return val === value;
+                });
+                if (!mapping || !mapping.id) {
+                    throw new Error("A \"".concat(attr, "\" attribute \"").concat(value, "\" value could not be mapped to a remote database field."));
+                }
+                return mapping.id;
+            }
+            return valuesMapping[value];
+        };
+        var getValue = function (attr) {
+            var value = _this.attrs[attr];
+            var isEmpty = function (val) { return val === null || val === undefined; };
+            if (isEmpty(value)) {
+                return;
+            }
+            if (!keys[attr]) {
+                attr = attr.includes('smpAttr:') ? attr : lodash.snakeCase(attr);
+                submission.values[attr] = value;
+                return;
+            }
+            value = mapValue(attr, value);
+            if (isEmpty(value)) {
+                return;
+            }
+            var warehouseAttr = keys[attr].id || attr;
+            var attrKey = !Number.isNaN(Number(warehouseAttr))
+                ? "smpAttr:".concat(warehouseAttr)
+                : warehouseAttr;
+            attrKey = attrKey.includes('smpAttr:') ? attrKey : lodash.snakeCase(attrKey);
+            submission.values[attrKey] = value;
+        };
+        Object.keys(this.attrs).forEach(getValue);
+        this.samples.forEach(function (model) {
+            if (_this.attrs.training)
+                model.attrs.training = _this.attrs.training; // eslint-disable-line no-param-reassign
+            var modelSubmission = model.getSubmission(warehouseMediaNames);
+            if (!modelSubmission)
+                return;
+            submission.samples.push(modelSubmission);
+        });
+        this.occurrences.forEach(function (model) {
+            if (_this.attrs.training)
+                model.attrs.training = _this.attrs.training; // eslint-disable-line no-param-reassign
+            var modelSubmission = model.getSubmission(warehouseMediaNames);
+            if (!modelSubmission)
+                return;
+            submission.occurrences.push(modelSubmission);
+        });
+        this.media.forEach(function (model) {
+            var modelSubmission = model.getSubmission(warehouseMediaNames);
+            if (!modelSubmission)
+                return;
+            submission.media.push(modelSubmission);
+        });
+        var survey = this.getSurvey();
+        if (survey.modifySubmission) {
+            return survey.modifySubmission(submission, this);
+        }
+        return submission;
+    };
+    Sample.prototype.isUploaded = function () {
+        if (this.parent) {
+            return this.parent.isUploaded();
+        }
+        return !!this.syncedAt;
+    };
+    Sample.prototype.isDisabled = function () {
+        return this.isUploaded();
+    };
+    /**
+     * Warehouse attributes and their values.
+     */
+    Sample.keys = {
+        location: { id: 'entered_sref' },
+        location_type: {
+            id: 'entered_sref_system',
+            values: {
+                british: 'OSGB', // for British National Grid
+                irish: 'OSIE', // for Irish Grid
+                channel: 'utm30ed50', // for Channel Islands Grid
+                latlon: 4326, // for Latitude and Longitude in decimal form (WGS84 datum)
+            },
+        },
+        group: { id: 'group_id' },
+        training: { id: 'training', values: helpers.boolToWarehouseValue },
+        deleted: { id: 'deleted', values: helpers.boolToWarehouseValue },
+    };
+    return Sample;
+}(Model["default"]));
+
+exports["default"] = Sample;
+exports.getMediaFormData = getMediaFormData;