@fideus-labs/ngff-zarr 0.20.0 → 0.22.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1 -1
- package/esm/io/from_ngff_zarr-browser.d.ts +1 -1
- package/esm/io/from_ngff_zarr-browser.d.ts.map +1 -1
- package/esm/io/from_ngff_zarr-browser.js +33 -0
- package/esm/io/from_ngff_zarr-browser.js.map +1 -1
- package/esm/io/from_ngff_zarr.d.ts +1 -1
- package/esm/io/from_ngff_zarr.d.ts.map +1 -1
- package/esm/io/from_ngff_zarr.js +14 -6
- package/esm/io/from_ngff_zarr.js.map +1 -1
- package/esm/io/to_ngff_zarr-browser.d.ts +1 -5
- package/esm/io/to_ngff_zarr-browser.d.ts.map +1 -1
- package/esm/io/to_ngff_zarr-browser.js +55 -34
- package/esm/io/to_ngff_zarr-browser.js.map +1 -1
- package/esm/io/to_ngff_zarr.d.ts +2 -5
- package/esm/io/to_ngff_zarr.d.ts.map +1 -1
- package/esm/io/to_ngff_zarr.js +58 -37
- package/esm/io/to_ngff_zarr.js.map +1 -1
- package/esm/io/to_ngff_zarr_ozx_common.d.ts +8 -9
- package/esm/io/to_ngff_zarr_ozx_common.d.ts.map +1 -1
- package/esm/io/to_ngff_zarr_ozx_common.js +22 -18
- package/esm/io/to_ngff_zarr_ozx_common.js.map +1 -1
- package/esm/mod.d.ts +1 -1
- package/esm/mod.d.ts.map +1 -1
- package/esm/mod.js +1 -1
- package/esm/mod.js.map +1 -1
- package/esm/process/to_multiscales-shared.d.ts +9 -0
- package/esm/process/to_multiscales-shared.d.ts.map +1 -1
- package/esm/process/to_multiscales-shared.js +19 -3
- package/esm/process/to_multiscales-shared.js.map +1 -1
- package/esm/types/rfc4.d.ts +8 -4
- package/esm/types/rfc4.d.ts.map +1 -1
- package/esm/types/rfc4.js +25 -6
- package/esm/types/rfc4.js.map +1 -1
- package/esm/types/supported_versions.d.ts +23 -1
- package/esm/types/supported_versions.d.ts.map +1 -1
- package/esm/types/supported_versions.js +27 -1
- package/esm/types/supported_versions.js.map +1 -1
- package/esm/types/zarr_metadata.d.ts +85 -1
- package/esm/types/zarr_metadata.d.ts.map +1 -1
- package/esm/types/zarr_metadata.js +30 -0
- package/esm/types/zarr_metadata.js.map +1 -1
- package/esm/utils/from_zarr_attrs.d.ts +12 -0
- package/esm/utils/from_zarr_attrs.d.ts.map +1 -1
- package/esm/utils/from_zarr_attrs.js +182 -0
- package/esm/utils/from_zarr_attrs.js.map +1 -1
- package/esm/utils/parse_metadata.d.ts.map +1 -1
- package/esm/utils/parse_metadata.js +7 -1
- package/esm/utils/parse_metadata.js.map +1 -1
- package/esm/utils/rfc4_validation.d.ts.map +1 -1
- package/esm/utils/rfc4_validation.js +17 -1
- package/esm/utils/rfc4_validation.js.map +1 -1
- package/esm/utils/structural_validation.d.ts.map +1 -1
- package/esm/utils/structural_validation.js.map +1 -1
- package/esm/utils/v06_metadata.d.ts +44 -0
- package/esm/utils/v06_metadata.d.ts.map +1 -0
- package/esm/utils/v06_metadata.js +293 -0
- package/esm/utils/v06_metadata.js.map +1 -0
- package/package.json +1 -1
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1
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+
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@@ -8,11 +8,11 @@ import type { NgffImage } from "../types/ngff_image.js";
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8
8
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import type { Axis } from "../types/zarr_metadata.js";
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9
9
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import type { MemoryStore } from "./rfc9_zip.js";
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10
10
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/**
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11
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-
* Process axes for
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12
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-
*
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13
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-
*
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11
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+
* Process axes for serialization.
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12
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* Anatomical orientation (RFC 4) is included whenever an axis carries it;
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13
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* axes without orientation simply omit the field.
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14
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*/
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15
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-
export declare function
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15
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+
export declare function processAxes(axes: Axis[]): Record<string, unknown>[];
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16
16
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/**
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17
17
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* Validate that the NgffMultiscales metadata version is compatible with RFC-9.
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18
18
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* RFC-9 always uses version 0.5.
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@@ -23,13 +23,13 @@ export declare function processAxesForRfcs(axes: Axis[], enabledRfcs?: number[])
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23
23
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export declare function validateRfc9Version(multiscales: NgffMultiscales): void;
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24
24
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/**
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25
25
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* Prepare multiscales metadata for RFC-9 export.
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26
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-
*
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26
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+
* Processes axes (anatomical orientation is serialized whenever present) and
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27
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+
* sets version to 0.5.
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27
28
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*
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28
29
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* @param multiscales - Source multiscales data
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29
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-
* @param enabledRfcs - Optional list of RFC numbers to enable
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30
30
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* @returns Prepared metadata object
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31
31
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*/
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|
32
|
-
export declare function prepareRfc9Metadata(multiscales: NgffMultiscales
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32
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+
export declare function prepareRfc9Metadata(multiscales: NgffMultiscales): Record<string, unknown>;
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33
33
|
/**
|
|
34
34
|
* Create root group attributes for RFC-9 export.
|
|
35
35
|
*
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@@ -44,10 +44,9 @@ export declare function createRfc9RootAttributes(multiscalesMetadata: Record<str
|
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|
44
44
|
*
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|
45
45
|
* @param store - Memory store to write to
|
|
46
46
|
* @param multiscales - NgffMultiscales data to write
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|
47
|
-
* @param enabledRfcs - Optional list of RFC numbers to enable
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|
48
47
|
* @param writeImage - Function to write individual images
|
|
49
48
|
* @param onProgress - Optional progress callback for cumulative chunk
|
|
50
49
|
* progress across all scale levels
|
|
51
50
|
*/
|
|
52
|
-
export declare function writeNgffMultiscalesToMemoryStore(store: MemoryStore, multiscales: NgffMultiscales,
|
|
51
|
+
export declare function writeNgffMultiscalesToMemoryStore(store: MemoryStore, multiscales: NgffMultiscales, writeImage: (group: zarr.Group<MemoryStore>, image: NgffImage, path: string, onProgress?: ((completedChunks: number, totalChunks: number) => void) | null) => Promise<void>, onProgress?: ((completedChunks: number, totalChunks: number) => void) | null): Promise<void>;
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53
52
|
//# sourceMappingURL=to_ngff_zarr_ozx_common.d.ts.map
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@@ -1 +1 @@
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|
1
|
-
{"version":3,"file":"to_ngff_zarr_ozx_common.d.ts","sourceRoot":"","sources":["../../src/io/to_ngff_zarr_ozx_common.ts"],"names":[],"mappings":"AAEA;;;GAGG;AAEH,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAEhC,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;
|
|
1
|
+
{"version":3,"file":"to_ngff_zarr_ozx_common.d.ts","sourceRoot":"","sources":["../../src/io/to_ngff_zarr_ozx_common.ts"],"names":[],"mappings":"AAEA;;;GAGG;AAEH,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAEhC,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACxD,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,2BAA2B,CAAC;AAEtD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAEjD;;;;GAIG;AACH,wBAAgB,WAAW,CACzB,IAAI,EAAE,IAAI,EAAE,GACX,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,CAsB3B;AAED;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CAAC,WAAW,EAAE,eAAe,GAAG,IAAI,CAOtE;AAED;;;;;;;GAOG;AACH,wBAAgB,mBAAmB,CACjC,WAAW,EAAE,eAAe,GAC3B,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CA8BzB;AAeD;;;;;;GAMG;AACH,wBAAgB,wBAAwB,CACtC,mBAAmB,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC5C,WAAW,EAAE,eAAe,GAC3B,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAgBzB;AAED;;;;;;;;;GASG;AACH,wBAAsB,iCAAiC,CACrD,KAAK,EAAE,WAAW,EAClB,WAAW,EAAE,eAAe,EAC5B,UAAU,EAAE,CACV,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,EAC9B,KAAK,EAAE,SAAS,EAChB,IAAI,EAAE,MAAM,EACZ,UAAU,CAAC,EACP,CAAC,CAAC,eAAe,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,KAAK,IAAI,CAAC,GACxD,IAAI,KACL,OAAO,CAAC,IAAI,CAAC,EAClB,UAAU,CAAC,EAAE,CAAC,CAAC,eAAe,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,KAAK,IAAI,CAAC,GAAG,IAAI,GAC3E,OAAO,CAAC,IAAI,CAAC,CAiEf"}
|
|
@@ -5,14 +5,13 @@
|
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5
5
|
* Used by both Node and browser implementations to avoid code duplication
|
|
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6
|
*/
|
|
7
7
|
import * as zarr from "zarrita";
|
|
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|
-
import {
|
|
8
|
+
import { legacyTopLevelTransforms } from "../utils/v06_metadata.js";
|
|
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9
|
/**
|
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|
-
* Process axes for
|
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-
*
|
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-
*
|
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|
+
* Process axes for serialization.
|
|
11
|
+
* Anatomical orientation (RFC 4) is included whenever an axis carries it;
|
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|
+
* axes without orientation simply omit the field.
|
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13
13
|
*/
|
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|
-
export function
|
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15
|
-
const rfc4Enabled = isRfc4Enabled(enabledRfcs);
|
|
14
|
+
export function processAxes(axes) {
|
|
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15
|
return axes.map((axis) => {
|
|
17
16
|
const result = {
|
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|
name: axis.name,
|
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@@ -22,8 +21,8 @@ export function processAxesForRfcs(axes, enabledRfcs) {
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|
if (axis.unit !== undefined) {
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|
result.unit = axis.unit;
|
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|
}
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// Include orientation
|
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if (
|
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// Include orientation whenever it is present
|
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|
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|
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|
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@@ -47,23 +46,29 @@ export function validateRfc9Version(multiscales) {
|
|
|
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|
}
|
|
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47
|
/**
|
|
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|
* Prepare multiscales metadata for RFC-9 export.
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|
-
*
|
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|
+
* Processes axes (anatomical orientation is serialized whenever present) and
|
|
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|
+
* sets version to 0.5.
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51
|
*
|
|
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52
|
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|
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|
-
* @param enabledRfcs - Optional list of RFC numbers to enable
|
|
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|
* @returns Prepared metadata object
|
|
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54
|
*/
|
|
56
|
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export function prepareRfc9Metadata(multiscales
|
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|
+
export function prepareRfc9Metadata(multiscales) {
|
|
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56
|
const _version = "0.5";
|
|
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|
-
// Process axes
|
|
59
|
-
const processedAxes =
|
|
57
|
+
// Process axes (orientation included when present)
|
|
58
|
+
const processedAxes = processAxes(multiscales.metadata.axes);
|
|
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|
+
// RFC-9 (.ozx) is always v0.5, which only supports the simple
|
|
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|
+
// scale/translation subset of top-level transforms. Reduce any v0.6-only
|
|
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|
+
// transforms (rotation/affine/sequence, or input/output/name on a
|
|
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|
+
// scale/translation) to that subset so they cannot leak into the store,
|
|
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|
+
// matching the v0.4/v0.5 branch of the regular writer.
|
|
64
|
+
const legacyTransforms = legacyTopLevelTransforms(multiscales.metadata.coordinateTransformations);
|
|
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65
|
return {
|
|
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66
|
version: _version,
|
|
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67
|
name: multiscales.metadata.name,
|
|
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68
|
axes: processedAxes,
|
|
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69
|
datasets: multiscales.metadata.datasets,
|
|
65
|
-
...(
|
|
66
|
-
coordinateTransformations:
|
|
70
|
+
...(legacyTransforms && {
|
|
71
|
+
coordinateTransformations: legacyTransforms,
|
|
67
72
|
}),
|
|
68
73
|
...(multiscales.metadata.type && {
|
|
69
74
|
type: multiscales.metadata.type,
|
|
@@ -112,18 +117,17 @@ export function createRfc9RootAttributes(multiscalesMetadata, multiscales) {
|
|
|
112
117
|
*
|
|
113
118
|
* @param store - Memory store to write to
|
|
114
119
|
* @param multiscales - NgffMultiscales data to write
|
|
115
|
-
* @param enabledRfcs - Optional list of RFC numbers to enable
|
|
116
120
|
* @param writeImage - Function to write individual images
|
|
117
121
|
* @param onProgress - Optional progress callback for cumulative chunk
|
|
118
122
|
* progress across all scale levels
|
|
119
123
|
*/
|
|
120
|
-
export async function writeNgffMultiscalesToMemoryStore(store, multiscales,
|
|
124
|
+
export async function writeNgffMultiscalesToMemoryStore(store, multiscales, writeImage, onProgress) {
|
|
121
125
|
// Validate version
|
|
122
126
|
validateRfc9Version(multiscales);
|
|
123
127
|
// Create root location and group with zarrita API
|
|
124
128
|
const root = zarr.root(store);
|
|
125
129
|
// Prepare metadata
|
|
126
|
-
const multiscalesMetadata = prepareRfc9Metadata(multiscales
|
|
130
|
+
const multiscalesMetadata = prepareRfc9Metadata(multiscales);
|
|
127
131
|
// Create root attributes
|
|
128
132
|
const attributes = createRfc9RootAttributes(multiscalesMetadata, multiscales);
|
|
129
133
|
const rootGroup = await zarr.create(root, { attributes });
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"to_ngff_zarr_ozx_common.js","sourceRoot":"","sources":["../../src/io/to_ngff_zarr_ozx_common.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B;;;GAGG;AAEH,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;
|
|
1
|
+
{"version":3,"file":"to_ngff_zarr_ozx_common.js","sourceRoot":"","sources":["../../src/io/to_ngff_zarr_ozx_common.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B;;;GAGG;AAEH,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAKhC,OAAO,EAAE,wBAAwB,EAAE,MAAM,0BAA0B,CAAC;AAGpE;;;;GAIG;AACH,MAAM,UAAU,WAAW,CACzB,IAAY;IAEZ,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;QACvB,MAAM,MAAM,GAA4B;YACtC,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,IAAI,EAAE,IAAI,CAAC,IAAI;SAChB,CAAC;QAEF,0BAA0B;QAC1B,IAAI,IAAI,CAAC,IAAI,KAAK,SAAS,EAAE,CAAC;YAC5B,MAAM,CAAC,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC;QAC1B,CAAC;QAED,6CAA6C;QAC7C,IAAI,IAAI,CAAC,WAAW,EAAE,CAAC;YACrB,MAAM,CAAC,WAAW,GAAG;gBACnB,IAAI,EAAE,IAAI,CAAC,WAAW,CAAC,IAAI;gBAC3B,KAAK,EAAE,IAAI,CAAC,WAAW,CAAC,KAAK;aAC9B,CAAC;QACJ,CAAC;QAED,OAAO,MAAM,CAAC;IAChB,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,mBAAmB,CAAC,WAA4B;IAC9D,MAAM,eAAe,GAAG,WAAW,CAAC,QAAQ,CAAC,OAAO,CAAC;IACrD,IAAI,eAAe,KAAK,SAAS,IAAI,eAAe,KAAK,KAAK,EAAE,CAAC;QAC/D,MAAM,IAAI,KAAK,CACb,wGAAwG,eAAe,IAAI,CAC5H,CAAC;IACJ,CAAC;AACH,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,mBAAmB,CACjC,WAA4B;IAE5B,MAAM,QAAQ,GAAG,KAAK,CAAC;IAEvB,mDAAmD;IACnD,MAAM,aAAa,GAAG,WAAW,CAAC,WAAW,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC;IAE7D,8DAA8D;IAC9D,yEAAyE;IACzE,kEAAkE;IAClE,wEAAwE;IACxE,uDAAuD;IACvD,MAAM,gBAAgB,GAAG,wBAAwB,CAC/C,WAAW,CAAC,QAAQ,CAAC,yBAAyB,CAC/C,CAAC;IAEF,OAAO;QACL,OAAO,EAAE,QAAQ;QACjB,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,IAAI;QAC/B,IAAI,EAAE,aAAa;QACnB,QAAQ,EAAE,WAAW,CAAC,QAAQ,CAAC,QAAQ;QACvC,GAAG,CAAC,gBAAgB,IAAI;YACtB,yBAAyB,EAAE,gBAAgB;SAC5C,CAAC;QACF,GAAG,CAAC,WAAW,CAAC,QAAQ,CAAC,IAAI,IAAI;YAC/B,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,IAAI;SAChC,CAAC;QACF,GAAG,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ,IAAI;YACnC,QAAQ,EAAE,WAAW,CAAC,QAAQ,CAAC,QAAQ;SACxC,CAAC;KACH,CAAC;AACJ,CAAC;AAED;;;;;GAKG;AACH,SAAS,kBAAkB,CAAC,KAAgB;IAC1C,IAAI,KAAK,CAAC,IAAI,CAAC,MAAM,IAAI,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACtD,OAAO,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC;IAC3B,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAS,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC;AAChE,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,wBAAwB,CACtC,mBAA4C,EAC5C,WAA4B;IAE5B,MAAM,QAAQ,GAAG,KAAK,CAAC;IAEvB,MAAM,UAAU,GAA4B;QAC1C,GAAG,EAAE;YACH,OAAO,EAAE,QAAQ;YACjB,WAAW,EAAE,CAAC,mBAAmB,CAAC;SACnC;KACF,CAAC;IAEF,8CAA8C;IAC9C,IAAI,WAAW,CAAC,QAAQ,CAAC,KAAK,EAAE,CAAC;QAC/B,UAAU,CAAC,KAAK,GAAG,WAAW,CAAC,QAAQ,CAAC,KAAK,CAAC;IAChD,CAAC;IAED,OAAO,UAAU,CAAC;AACpB,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,iCAAiC,CACrD,KAAkB,EAClB,WAA4B,EAC5B,UAOkB,EAClB,UAA4E;IAE5E,mBAAmB;IACnB,mBAAmB,CAAC,WAAW,CAAC,CAAC;IAEjC,kDAAkD;IAClD,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAE9B,mBAAmB;IACnB,MAAM,mBAAmB,GAAG,mBAAmB,CAAC,WAAW,CAAC,CAAC;IAE7D,yBAAyB;IACzB,MAAM,UAAU,GAAG,wBAAwB,CAAC,mBAAmB,EAAE,WAAW,CAAC,CAAC;IAE9E,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,IAAI,EAAE,EAAE,UAAU,EAAE,CAAC,CAAC;IAE1D,4EAA4E;IAC5E,IAAI,WAAW,GAAG,CAAC,CAAC;IACpB,IAAI,UAAU,EAAE,CAAC;QACf,KAAK,MAAM,KAAK,IAAI,WAAW,CAAC,MAAM,EAAE,CAAC;YACvC,MAAM,KAAK,GAAG,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC;YAC/B,MAAM,MAAM,GAAG,kBAAkB,CAAC,KAAK,CAAC,CAAC;YACzC,IAAI,WAAW,GAAG,CAAC,CAAC;YACpB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACtC,WAAW,IAAI,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;YACjD,CAAC;YACD,WAAW,IAAI,WAAW,CAAC;QAC7B,CAAC;IACH,CAAC;IAED,sCAAsC;IACtC,IAAI,eAAe,GAAG,CAAC,CAAC;IACxB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACnD,MAAM,KAAK,GAAG,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QACpC,MAAM,OAAO,GAAG,WAAW,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;QAEjD,IAAI,CAAC,OAAO,EAAE,CAAC;YACb,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,EAAE,CAAC,CAAC;QACnE,CAAC;QAED,uEAAuE;QACvE,MAAM,WAAW,GAAG,eAAe,CAAC;QACpC,MAAM,aAAa,GAAG,UAAU;YAC9B,CAAC,CAAC,CAAC,SAAiB,EAAE,WAAmB,EAAE,EAAE;gBAC3C,UAAU,CAAC,WAAW,GAAG,SAAS,EAAE,WAAW,CAAC,CAAC;YACnD,CAAC;YACD,CAAC,CAAC,IAAI,CAAC;QAET,MAAM,UAAU,CACd,SAAoC,EACpC,KAAK,EACL,OAAO,CAAC,IAAI,EACZ,aAAa,CACd,CAAC;QAEF,0CAA0C;QAC1C,IAAI,UAAU,EAAE,CAAC;YACf,MAAM,KAAK,GAAG,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC;YAC/B,MAAM,MAAM,GAAG,kBAAkB,CAAC,KAAK,CAAC,CAAC;YACzC,IAAI,eAAe,GAAG,CAAC,CAAC;YACxB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACtC,eAAe,IAAI,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;YACrD,CAAC;YACD,eAAe,IAAI,eAAe,CAAC;QACrC,CAAC;IACH,CAAC;AACH,CAAC"}
|
package/esm/mod.d.ts
CHANGED
|
@@ -26,7 +26,7 @@ export { AVAILABLE_CODECS, bytesOnlyCodecs, codecFromName, defaultCodecs, } from
|
|
|
26
26
|
export type { ComputeOmeroFromMultiscalesOptions, ComputeOmeroOptions, } from "./utils/compute_omero.js";
|
|
27
27
|
export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
|
|
28
28
|
export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, createNgffMultiscales, } from "./utils/factory.js";
|
|
29
|
-
export { fromZarrAttrsV04, fromZarrAttrsV05 } from "./utils/from_zarr_attrs.js";
|
|
29
|
+
export { fromZarrAttrsV04, fromZarrAttrsV05, fromZarrAttrsV06, } from "./utils/from_zarr_attrs.js";
|
|
30
30
|
export { getMethodMetadata } from "./utils/method_metadata.js";
|
|
31
31
|
export { detectVersion, extractMethodMetadata, parseOmero, } from "./utils/parse_metadata.js";
|
|
32
32
|
export { SpecRule, type ValidateOptions, validatePlate, validateStructural, validateWell, ValidationError, ValidationLevel, } from "./utils/structural_validation.js";
|
package/esm/mod.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"mod.d.ts","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AACxD,cAAc,wBAAwB,CAAC;AACvC,cAAc,aAAa,CAAC;AAC5B,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAChD,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC;AAEhE,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,cAAc,sBAAsB,CAAC;AACrC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,gBAAgB,CAAC;AAC/B,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kBAAkB,CAAC;AACjC,cAAc,0BAA0B,CAAC;AACzC,YAAY,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,mBAAmB,CAAC;AAC9D,OAAO,EACL,gBAAgB,EAChB,eAAe,EACf,aAAa,EACb,aAAa,GACd,MAAM,mBAAmB,CAAC;AAC3B,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,EACf,qBAAqB,GACtB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,
|
|
1
|
+
{"version":3,"file":"mod.d.ts","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AACxD,cAAc,wBAAwB,CAAC;AACvC,cAAc,aAAa,CAAC;AAC5B,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAChD,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC;AAEhE,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,cAAc,sBAAsB,CAAC;AACrC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,gBAAgB,CAAC;AAC/B,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kBAAkB,CAAC;AACjC,cAAc,0BAA0B,CAAC;AACzC,YAAY,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,mBAAmB,CAAC;AAC9D,OAAO,EACL,gBAAgB,EAChB,eAAe,EACf,aAAa,EACb,aAAa,GACd,MAAM,mBAAmB,CAAC;AAC3B,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,EACf,qBAAqB,GACtB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACL,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,GACjB,MAAM,4BAA4B,CAAC;AACpC,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,QAAQ,EACR,KAAK,eAAe,EACpB,aAAa,EACb,kBAAkB,EAClB,YAAY,EACZ,eAAe,EACf,eAAe,GAChB,MAAM,kCAAkC,CAAC;AAC1C,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC"}
|
package/esm/mod.js
CHANGED
|
@@ -26,7 +26,7 @@ export * from "./types/zarr_metadata.js";
|
|
|
26
26
|
export { AVAILABLE_CODECS, bytesOnlyCodecs, codecFromName, defaultCodecs, } from "./utils/codecs.js";
|
|
27
27
|
export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
|
|
28
28
|
export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, createNgffMultiscales, } from "./utils/factory.js";
|
|
29
|
-
export { fromZarrAttrsV04, fromZarrAttrsV05 } from "./utils/from_zarr_attrs.js";
|
|
29
|
+
export { fromZarrAttrsV04, fromZarrAttrsV05, fromZarrAttrsV06, } from "./utils/from_zarr_attrs.js";
|
|
30
30
|
export { getMethodMetadata } from "./utils/method_metadata.js";
|
|
31
31
|
export { detectVersion, extractMethodMetadata, parseOmero, } from "./utils/parse_metadata.js";
|
|
32
32
|
export { SpecRule, validatePlate, validateStructural, validateWell, ValidationError, ValidationLevel, } from "./utils/structural_validation.js";
|
package/esm/mod.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"mod.js","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAE/B,OAAO,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AACxD,cAAc,wBAAwB,CAAC;AACvC,cAAc,aAAa,CAAC;AAC5B,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAEhD,gBAAgB;AAChB,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,cAAc,sBAAsB,CAAC;AACrC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,gBAAgB,CAAC;AAC/B,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kBAAkB,CAAC;AACjC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,eAAe,EACf,aAAa,EACb,aAAa,GACd,MAAM,mBAAmB,CAAC;AAK3B,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,EACf,qBAAqB,GACtB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,
|
|
1
|
+
{"version":3,"file":"mod.js","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAE/B,OAAO,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AACxD,cAAc,wBAAwB,CAAC;AACvC,cAAc,aAAa,CAAC;AAC5B,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAEhD,gBAAgB;AAChB,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,cAAc,sBAAsB,CAAC;AACrC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,gBAAgB,CAAC;AAC/B,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kBAAkB,CAAC;AACjC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,eAAe,EACf,aAAa,EACb,aAAa,GACd,MAAM,mBAAmB,CAAC;AAK3B,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,EACf,qBAAqB,GACtB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACL,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,GACjB,MAAM,4BAA4B,CAAC;AACpC,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,QAAQ,EAER,aAAa,EACb,kBAAkB,EAClB,YAAY,EACZ,eAAe,EACf,eAAe,GAChB,MAAM,kCAAkC,CAAC;AAC1C,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC"}
|
|
@@ -7,11 +7,20 @@ import { Methods } from "../types/methods.js";
|
|
|
7
7
|
import type { NgffMultiscales } from "../types/multiscales.js";
|
|
8
8
|
import type { NgffImage } from "../types/ngff_image.js";
|
|
9
9
|
import type { ZarrCodec } from "../utils/codecs.js";
|
|
10
|
+
import type { AnatomicalOrientation } from "../types/rfc4.js";
|
|
10
11
|
export type { ZarrCodec };
|
|
11
12
|
export interface ToMultiscalesOptions {
|
|
12
13
|
scaleFactors?: (Record<string, number> | number)[];
|
|
13
14
|
method?: Methods;
|
|
14
15
|
chunks?: number | number[] | Record<string, number>;
|
|
16
|
+
/**
|
|
17
|
+
* Anatomical orientation (RFC 4) for the spatial axes. Either a preset
|
|
18
|
+
* coordinate-system name ("LPS" or "RAS", case-insensitive) or a mapping of
|
|
19
|
+
* axis name to {@link AnatomicalOrientation}. When provided, it takes
|
|
20
|
+
* precedence over any `axesOrientations` on the input image. Orientation is
|
|
21
|
+
* written to the output automatically whenever it is present.
|
|
22
|
+
*/
|
|
23
|
+
orientation?: string | Record<string, AnatomicalOrientation>;
|
|
15
24
|
/**
|
|
16
25
|
* Codec pipeline for intermediate zarr arrays created during
|
|
17
26
|
* downsampling. When omitted the default blosc+zstd pipeline is
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"to_multiscales-shared.d.ts","sourceRoot":"","sources":["../../src/process/to_multiscales-shared.ts"],"names":[],"mappings":"AAGA;;;;GAIG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACxD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;
|
|
1
|
+
{"version":3,"file":"to_multiscales-shared.d.ts","sourceRoot":"","sources":["../../src/process/to_multiscales-shared.ts"],"names":[],"mappings":"AAGA;;;;GAIG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACxD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAUpD,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AAO9D,YAAY,EAAE,SAAS,EAAE,CAAC;AAE1B,MAAM,WAAW,oBAAoB;IACnC,YAAY,CAAC,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,CAAC;IACnD,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAEpD;;;;;;OAMG;IACH,WAAW,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,qBAAqB,CAAC,CAAC;IAE7D;;;;;;;;;OASG;IACH,MAAM,CAAC,EAAE,SAAS,EAAE,CAAC;CACtB;AAED;;GAEG;AACH,MAAM,MAAM,kBAAkB,GAAG,CAC/B,KAAK,EAAE,SAAS,EAChB,YAAY,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,EACjD,SAAS,EAAE,UAAU,GAAG,YAAY,GAAG,aAAa,EACpD,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,EACnD,MAAM,CAAC,EAAE,SAAS,EAAE,KACjB,OAAO,CAAC,SAAS,EAAE,CAAC,CAAC;AAE1B;;;;;;;;GAQG;AACH,wBAAsB,iBAAiB,CACrC,KAAK,EAAE,SAAS,EAChB,OAAO,EAAE,oBAAoB,EAC7B,iBAAiB,EAAE,kBAAkB,GACpC,OAAO,CAAC,eAAe,CAAC,CA2F1B"}
|
|
@@ -8,6 +8,8 @@
|
|
|
8
8
|
import { Methods } from "../types/methods.js";
|
|
9
9
|
import { createAxis, createDataset, createMetadata, createNgffMultiscales, } from "../utils/factory.js";
|
|
10
10
|
import { getMethodMetadata } from "../utils/method_metadata.js";
|
|
11
|
+
import { orientationFromName } from "../types/rfc4.js";
|
|
12
|
+
import { createCoordinateSystem, INTRINSIC_COORDINATE_SYSTEM_NAME, } from "../types/zarr_metadata.js";
|
|
11
13
|
/**
|
|
12
14
|
* Generate multiple resolution scales for an NgffImage
|
|
13
15
|
* This is the core implementation used by both browser and Node versions.
|
|
@@ -18,7 +20,15 @@ import { getMethodMetadata } from "../utils/method_metadata.js";
|
|
|
18
20
|
* @returns NgffMultiscales object
|
|
19
21
|
*/
|
|
20
22
|
export async function toMultiscalesCore(image, options, downsampleItkWasm) {
|
|
21
|
-
const { scaleFactors = [2, 4], method = Methods.ITKWASM_GAUSSIAN, chunks: _chunks, codecs, } = options;
|
|
23
|
+
const { scaleFactors = [2, 4], method = Methods.ITKWASM_GAUSSIAN, chunks: _chunks, codecs, orientation, } = options;
|
|
24
|
+
// Resolve anatomical orientation (RFC 4). An explicit `orientation` option
|
|
25
|
+
// (preset name or mapping) takes precedence over the input image's
|
|
26
|
+
// axesOrientations.
|
|
27
|
+
const axesOrientations = orientation === undefined
|
|
28
|
+
? image.axesOrientations
|
|
29
|
+
: typeof orientation === "string"
|
|
30
|
+
? orientationFromName(orientation)
|
|
31
|
+
: orientation;
|
|
22
32
|
let images;
|
|
23
33
|
// Check if we should perform actual downsampling
|
|
24
34
|
if (method === Methods.ITKWASM_GAUSSIAN ||
|
|
@@ -39,8 +49,8 @@ export async function toMultiscalesCore(image, options, downsampleItkWasm) {
|
|
|
39
49
|
// Create axes from image dimensions, including orientation if present
|
|
40
50
|
const axes = image.dims.map((dim) => {
|
|
41
51
|
if (dim === "x" || dim === "y" || dim === "z") {
|
|
42
|
-
const
|
|
43
|
-
return createAxis(dim, "space", image.axesUnits?.[dim],
|
|
52
|
+
const axisOrientation = axesOrientations?.[dim];
|
|
53
|
+
return createAxis(dim, "space", image.axesUnits?.[dim], axisOrientation);
|
|
44
54
|
}
|
|
45
55
|
else if (dim === "c") {
|
|
46
56
|
return createAxis(dim, "channel");
|
|
@@ -59,6 +69,12 @@ export async function toMultiscalesCore(image, options, downsampleItkWasm) {
|
|
|
59
69
|
// Create metadata with method information
|
|
60
70
|
const methodMetadata = getMethodMetadata(method);
|
|
61
71
|
const metadata = createMetadata(axes, datasets, image.name);
|
|
72
|
+
// RFC 5 / v0.6 exposes the implicit "intrinsic" coordinate system (the axes
|
|
73
|
+
// of the full-resolution image); each dataset maps into it. Older versions
|
|
74
|
+
// ignore this field on write. Mirrors the Python v0.6 `to_multiscales`.
|
|
75
|
+
metadata.coordinateSystems = [
|
|
76
|
+
createCoordinateSystem(INTRINSIC_COORDINATE_SYSTEM_NAME, axes),
|
|
77
|
+
];
|
|
62
78
|
// The 'type' field, part of the OME-Zarr specification, in metadata is used here to
|
|
63
79
|
// record the downsampling method applied to generate multiscale images for provenance.
|
|
64
80
|
metadata.type = method;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"to_multiscales-shared.js","sourceRoot":"","sources":["../../src/process/to_multiscales-shared.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAE/B;;;;GAIG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAM9C,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,qBAAqB,GACtB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,iBAAiB,EAAE,MAAM,6BAA6B,CAAC;
|
|
1
|
+
{"version":3,"file":"to_multiscales-shared.js","sourceRoot":"","sources":["../../src/process/to_multiscales-shared.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAE/B;;;;GAIG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAM9C,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,qBAAqB,GACtB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,iBAAiB,EAAE,MAAM,6BAA6B,CAAC;AAEhE,OAAO,EAAE,mBAAmB,EAAE,MAAM,kBAAkB,CAAC;AACvD,OAAO,EACL,sBAAsB,EACtB,gCAAgC,GACjC,MAAM,2BAA2B,CAAC;AA0CnC;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,KAAgB,EAChB,OAA6B,EAC7B,iBAAqC;IAErC,MAAM,EACJ,YAAY,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,EACrB,MAAM,GAAG,OAAO,CAAC,gBAAgB,EACjC,MAAM,EAAE,OAAO,EACf,MAAM,EACN,WAAW,GACZ,GAAG,OAAO,CAAC;IAEZ,2EAA2E;IAC3E,mEAAmE;IACnE,oBAAoB;IACpB,MAAM,gBAAgB,GACpB,WAAW,KAAK,SAAS;QACvB,CAAC,CAAC,KAAK,CAAC,gBAAgB;QACxB,CAAC,CAAC,OAAO,WAAW,KAAK,QAAQ;YACjC,CAAC,CAAC,mBAAmB,CAAC,WAAW,CAAC;YAClC,CAAC,CAAC,WAAW,CAAC;IAElB,IAAI,MAAmB,CAAC;IAExB,iDAAiD;IACjD,IACE,MAAM,KAAK,OAAO,CAAC,gBAAgB;QACnC,MAAM,KAAK,OAAO,CAAC,kBAAkB;QACrC,MAAM,KAAK,OAAO,CAAC,mBAAmB,EACtC,CAAC;QACD,6CAA6C;QAC7C,MAAM,SAAS,GAAG,MAAM,KAAK,OAAO,CAAC,gBAAgB;YACnD,CAAC,CAAC,UAAU;YACZ,CAAC,CAAC,MAAM,KAAK,OAAO,CAAC,kBAAkB;gBACvC,CAAC,CAAC,YAAY;gBACd,CAAC,CAAC,aAAa,CAAC;QAElB,MAAM,GAAG,MAAM,iBAAiB,CAC9B,KAAK,EACL,YAAmD,EACnD,SAAS,EACT,OAAO,EACP,MAAM,CACP,CAAC;IACJ,CAAC;SAAM,CAAC;QACN,gEAAgE;QAChE,MAAM,GAAG,CAAC,KAAK,CAAC,CAAC;IACnB,CAAC;IAED,sEAAsE;IACtE,MAAM,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;QAClC,IAAI,GAAG,KAAK,GAAG,IAAI,GAAG,KAAK,GAAG,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YAC9C,MAAM,eAAe,GAAG,gBAAgB,EAAE,CAAC,GAAG,CAAC,CAAC;YAChD,OAAO,UAAU,CACf,GAAsB,EACtB,OAAO,EACP,KAAK,CAAC,SAAS,EAAE,CAAC,GAAG,CAAC,EACtB,eAAe,CAChB,CAAC;QACJ,CAAC;aAAM,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YACvB,OAAO,UAAU,CAAC,GAAU,EAAE,SAAS,CAAC,CAAC;QAC3C,CAAC;aAAM,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YACvB,OAAO,UAAU,CAAC,GAAU,EAAE,MAAM,CAAC,CAAC;QACxC,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,0BAA0B,GAAG,EAAE,CAAC,CAAC;QACnD,CAAC;IACH,CAAC,CAAC,CAAC;IAEH,iCAAiC;IACjC,MAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,KAAK,EAAE,EAAE;QACzC,OAAO,aAAa,CAClB,QAAQ,KAAK,EAAE,EACf,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,EACrC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAC5C,CAAC;IACJ,CAAC,CAAC,CAAC;IAEH,0CAA0C;IAC1C,MAAM,cAAc,GAAG,iBAAiB,CAAC,MAAM,CAAC,CAAC;IACjD,MAAM,QAAQ,GAAG,cAAc,CAAC,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;IAC5D,4EAA4E;IAC5E,2EAA2E;IAC3E,wEAAwE;IACxE,QAAQ,CAAC,iBAAiB,GAAG;QAC3B,sBAAsB,CAAC,gCAAgC,EAAE,IAAI,CAAC;KAC/D,CAAC;IACF,oFAAoF;IACpF,uFAAuF;IACvF,QAAQ,CAAC,IAAI,GAAG,MAAM,CAAC;IACvB,IAAI,cAAc,EAAE,CAAC;QACnB,QAAQ,CAAC,QAAQ,GAAG,cAAc,CAAC;IACrC,CAAC;IAED,OAAO,qBAAqB,CAAC,MAAM,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,CAAC,CAAC;AACvE,CAAC"}
|
package/esm/types/rfc4.d.ts
CHANGED
|
@@ -65,6 +65,14 @@ export declare const LPS: Record<string, AnatomicalOrientation>;
|
|
|
65
65
|
* This coordinate system is commonly used in neuroimaging applications like FreeSurfer and FSL.
|
|
66
66
|
*/
|
|
67
67
|
export declare const RAS: Record<string, AnatomicalOrientation>;
|
|
68
|
+
/**
|
|
69
|
+
* Resolve an anatomical orientation preset name to per-axis orientations.
|
|
70
|
+
*
|
|
71
|
+
* @param name - A preset coordinate-system name: "LPS" or "RAS" (case-insensitive)
|
|
72
|
+
* @returns A mapping of spatial axis name to AnatomicalOrientation
|
|
73
|
+
* @throws Error if the name is not a recognized preset
|
|
74
|
+
*/
|
|
75
|
+
export declare function orientationFromName(name: string): Record<string, AnatomicalOrientation>;
|
|
68
76
|
/**
|
|
69
77
|
* Convert ITK LPS coordinate system to anatomical orientation.
|
|
70
78
|
*
|
|
@@ -122,10 +130,6 @@ export declare function itkDirectionToAnatomicalOrientation(directionColumn: rea
|
|
|
122
130
|
* values.
|
|
123
131
|
*/
|
|
124
132
|
export declare function anatomicalOrientationToItkDirection(orientation: AnatomicalOrientationValues): number[] | undefined;
|
|
125
|
-
/**
|
|
126
|
-
* Check if RFC 4 is enabled in the list of enabled RFCs.
|
|
127
|
-
*/
|
|
128
|
-
export declare function isRfc4Enabled(enabledRfcs?: number[]): boolean;
|
|
129
133
|
/**
|
|
130
134
|
* Add anatomical orientation to an axis object.
|
|
131
135
|
*
|
package/esm/types/rfc4.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"rfc4.d.ts","sourceRoot":"","sources":["../../src/types/rfc4.ts"],"names":[],"mappings":"AAEA;;;;;GAKG;AAEH;;;;;GAKG;AACH,oBAAY,2BAA2B;IAErC,WAAW,kBAAkB;IAE7B,WAAW,kBAAkB;IAE7B,mBAAmB,0BAA0B;IAE7C,mBAAmB,0BAA0B;IAE7C,kBAAkB,yBAAyB;IAE3C,kBAAkB,yBAAyB;IAE3C,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,cAAc,qBAAqB;IAEnC,cAAc,qBAAqB;IAEnC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,gBAAgB,uBAAuB;IAEvC,gBAAgB,uBAAuB;IAEvC,iBAAiB,wBAAwB;IAEzC,iBAAiB,wBAAwB;IAEzC,aAAa,oBAAoB;IAEjC,aAAa,oBAAoB;IAEjC,UAAU,iBAAiB;IAE3B,UAAU,iBAAiB;CAC5B;AAED;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC,QAAQ,CAAC,IAAI,EAAE,YAAY,CAAC;IAC5B,QAAQ,CAAC,KAAK,EAAE,2BAA2B,CAAC;CAC7C;AAED;;GAEG;AACH,wBAAgB,2BAA2B,CACzC,KAAK,EAAE,2BAA2B,GACjC,qBAAqB,CAKvB;AAED;;;;;;;GAOG;AACH,eAAO,MAAM,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,qBAAqB,CAQrD,CAAC;AAEF;;;;;;;GAOG;AACH,eAAO,MAAM,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,qBAAqB,CAQrD,CAAC;
|
|
1
|
+
{"version":3,"file":"rfc4.d.ts","sourceRoot":"","sources":["../../src/types/rfc4.ts"],"names":[],"mappings":"AAEA;;;;;GAKG;AAEH;;;;;GAKG;AACH,oBAAY,2BAA2B;IAErC,WAAW,kBAAkB;IAE7B,WAAW,kBAAkB;IAE7B,mBAAmB,0BAA0B;IAE7C,mBAAmB,0BAA0B;IAE7C,kBAAkB,yBAAyB;IAE3C,kBAAkB,yBAAyB;IAE3C,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,cAAc,qBAAqB;IAEnC,cAAc,qBAAqB;IAEnC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,eAAe,sBAAsB;IAErC,gBAAgB,uBAAuB;IAEvC,gBAAgB,uBAAuB;IAEvC,iBAAiB,wBAAwB;IAEzC,iBAAiB,wBAAwB;IAEzC,aAAa,oBAAoB;IAEjC,aAAa,oBAAoB;IAEjC,UAAU,iBAAiB;IAE3B,UAAU,iBAAiB;CAC5B;AAED;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC,QAAQ,CAAC,IAAI,EAAE,YAAY,CAAC;IAC5B,QAAQ,CAAC,KAAK,EAAE,2BAA2B,CAAC;CAC7C;AAED;;GAEG;AACH,wBAAgB,2BAA2B,CACzC,KAAK,EAAE,2BAA2B,GACjC,qBAAqB,CAKvB;AAED;;;;;;;GAOG;AACH,eAAO,MAAM,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,qBAAqB,CAQrD,CAAC;AAEF;;;;;;;GAOG;AACH,eAAO,MAAM,GAAG,EAAE,MAAM,CAAC,MAAM,EAAE,qBAAqB,CAQrD,CAAC;AAaF;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CACjC,IAAI,EAAE,MAAM,GACX,MAAM,CAAC,MAAM,EAAE,qBAAqB,CAAC,CAYvC;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,6BAA6B,CAC3C,QAAQ,EAAE,MAAM,GACf,qBAAqB,GAAG,SAAS,CAEnC;AA8CD;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AACH,wBAAgB,mCAAmC,CACjD,eAAe,EAAE,SAAS,MAAM,EAAE,GACjC,qBAAqB,CAsBvB;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,mCAAmC,CACjD,WAAW,EAAE,2BAA2B,GACvC,MAAM,EAAE,GAAG,SAAS,CAmBtB;AAED;;;;;;GAMG;AACH,wBAAgB,8BAA8B,CAC5C,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EACjC,WAAW,EAAE,qBAAqB,GACjC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAQzB;AAED;;;;;GAKG;AACH,wBAAgB,mCAAmC,CACjD,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAChC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAGzB"}
|
package/esm/types/rfc4.js
CHANGED
|
@@ -98,6 +98,31 @@ export const RAS = {
|
|
|
98
98
|
y: createAnatomicalOrientation(AnatomicalOrientationValues.PosteriorToAnterior),
|
|
99
99
|
z: createAnatomicalOrientation(AnatomicalOrientationValues.InferiorToSuperior),
|
|
100
100
|
};
|
|
101
|
+
/**
|
|
102
|
+
* Preset anatomical orientation coordinate systems, keyed by lowercased name.
|
|
103
|
+
*/
|
|
104
|
+
const ORIENTATION_PRESETS = {
|
|
105
|
+
lps: LPS,
|
|
106
|
+
ras: RAS,
|
|
107
|
+
};
|
|
108
|
+
/**
|
|
109
|
+
* Resolve an anatomical orientation preset name to per-axis orientations.
|
|
110
|
+
*
|
|
111
|
+
* @param name - A preset coordinate-system name: "LPS" or "RAS" (case-insensitive)
|
|
112
|
+
* @returns A mapping of spatial axis name to AnatomicalOrientation
|
|
113
|
+
* @throws Error if the name is not a recognized preset
|
|
114
|
+
*/
|
|
115
|
+
export function orientationFromName(name) {
|
|
116
|
+
const preset = ORIENTATION_PRESETS[name.toLowerCase()];
|
|
117
|
+
if (preset === undefined) {
|
|
118
|
+
const supported = Object.keys(ORIENTATION_PRESETS)
|
|
119
|
+
.map((p) => p.toUpperCase())
|
|
120
|
+
.join(", ");
|
|
121
|
+
throw new Error(`Unknown anatomical orientation preset: "${name}". ` +
|
|
122
|
+
`Supported presets: ${supported}.`);
|
|
123
|
+
}
|
|
124
|
+
return { ...preset };
|
|
125
|
+
}
|
|
101
126
|
/**
|
|
102
127
|
* Convert ITK LPS coordinate system to anatomical orientation.
|
|
103
128
|
*
|
|
@@ -230,12 +255,6 @@ export function anatomicalOrientationToItkDirection(orientation) {
|
|
|
230
255
|
}
|
|
231
256
|
return undefined;
|
|
232
257
|
}
|
|
233
|
-
/**
|
|
234
|
-
* Check if RFC 4 is enabled in the list of enabled RFCs.
|
|
235
|
-
*/
|
|
236
|
-
export function isRfc4Enabled(enabledRfcs) {
|
|
237
|
-
return enabledRfcs !== undefined && enabledRfcs.includes(4);
|
|
238
|
-
}
|
|
239
258
|
/**
|
|
240
259
|
* Add anatomical orientation to an axis object.
|
|
241
260
|
*
|
package/esm/types/rfc4.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"rfc4.js","sourceRoot":"","sources":["../../src/types/rfc4.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B;;;;;GAKG;AAEH;;;;;GAKG;AACH,MAAM,CAAN,IAAY,2BAiDX;AAjDD,WAAY,2BAA2B;IACrC,wHAAwH;IACxH,4DAA6B,CAAA;IAC7B,wHAAwH;IACxH,4DAA6B,CAAA;IAC7B,6HAA6H;IAC7H,4EAA6C,CAAA;IAC7C,6HAA6H;IAC7H,4EAA6C,CAAA;IAC7C,qHAAqH;IACrH,0EAA2C,CAAA;IAC3C,qHAAqH;IACrH,0EAA2C,CAAA;IAC3C,oIAAoI;IACpI,oEAAqC,CAAA;IACrC,oIAAoI;IACpI,oEAAqC,CAAA;IACrC,+GAA+G;IAC/G,kEAAmC,CAAA;IACnC,+GAA+G;IAC/G,kEAAmC,CAAA;IACnC,gHAAgH;IAChH,oEAAqC,CAAA;IACrC,gHAAgH;IAChH,oEAAqC,CAAA;IACrC,gLAAgL;IAChL,oEAAqC,CAAA;IACrC,gLAAgL;IAChL,oEAAqC,CAAA;IACrC,4HAA4H;IAC5H,oEAAqC,CAAA;IACrC,4HAA4H;IAC5H,oEAAqC,CAAA;IACrC,wHAAwH;IACxH,sEAAuC,CAAA;IACvC,wHAAwH;IACxH,sEAAuC,CAAA;IACvC,wJAAwJ;IACxJ,wEAAyC,CAAA;IACzC,wJAAwJ;IACxJ,wEAAyC,CAAA;IACzC,yJAAyJ;IACzJ,gEAAiC,CAAA;IACjC,yJAAyJ;IACzJ,gEAAiC,CAAA;IACjC,2HAA2H;IAC3H,0DAA2B,CAAA;IAC3B,2HAA2H;IAC3H,0DAA2B,CAAA;AAC7B,CAAC,EAjDW,2BAA2B,KAA3B,2BAA2B,QAiDtC;AAUD;;GAEG;AACH,MAAM,UAAU,2BAA2B,CACzC,KAAkC;IAElC,OAAO;QACL,IAAI,EAAE,YAAY;QAClB,KAAK;KACN,CAAC;AACJ,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,CAAC,MAAM,GAAG,GAA0C;IACxD,CAAC,EAAE,2BAA2B,CAAC,2BAA2B,CAAC,WAAW,CAAC;IACvE,CAAC,EAAE,2BAA2B,CAC5B,2BAA2B,CAAC,mBAAmB,CAChD;IACD,CAAC,EAAE,2BAA2B,CAC5B,2BAA2B,CAAC,kBAAkB,CAC/C;CACF,CAAC;AAEF;;;;;;;GAOG;AACH,MAAM,CAAC,MAAM,GAAG,GAA0C;IACxD,CAAC,EAAE,2BAA2B,CAAC,2BAA2B,CAAC,WAAW,CAAC;IACvE,CAAC,EAAE,2BAA2B,CAC5B,2BAA2B,CAAC,mBAAmB,CAChD;IACD,CAAC,EAAE,2BAA2B,CAC5B,2BAA2B,CAAC,kBAAkB,CAC/C;CACF,CAAC;AAEF;;;;;;;;;;;GAWG;AACH,MAAM,UAAU,6BAA6B,CAC3C,QAAgB;IAEhB,OAAO,GAAG,CAAC,QAAQ,CAAC,CAAC;AACvB,CAAC;AAED;;;;GAIG;AACH,MAAM,sBAAsB,GAAG,CAAC,CAAC;AAEjC;;;;;;;;;;;;;;;;;;GAkBG;AACH,MAAM,qBAAqB,GAGrB;IACJ;QACE,2BAA2B,CAAC,WAAW;QACvC,2BAA2B,CAAC,WAAW;KACxC;IACD;QACE,2BAA2B,CAAC,mBAAmB;QAC/C,2BAA2B,CAAC,mBAAmB;KAChD;IACD;QACE,2BAA2B,CAAC,kBAAkB;QAC9C,2BAA2B,CAAC,kBAAkB;KAC/C;CACF,CAAC;AAEF;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AACH,MAAM,UAAU,mCAAmC,CACjD,eAAkC;IAElC,IAAI,eAAe,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC/B,MAAM,IAAI,KAAK,CACb,wEAAwE,eAAe,CAAC,MAAM,EAAE,CACjG,CAAC;IACJ,CAAC;IACD,+DAA+D;IAC/D,IAAI,YAAY,GAAG,CAAC,CAAC;IACrB,IAAI,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1C,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,MAAM,EAAE,sBAAsB,CAAC,CAAC;IACnE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;QAC3B,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC;QAC5C,IAAI,MAAM,GAAG,MAAM,EAAE,CAAC;YACpB,MAAM,GAAG,MAAM,CAAC;YAChB,YAAY,GAAG,CAAC,CAAC;QACnB,CAAC;IACH,CAAC;IAED,mEAAmE;IACnE,MAAM,IAAI,GAAG,qBAAqB,CAAC,YAAY,CAAC,CAAC;IACjD,MAAM,KAAK,GAAG,eAAe,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACrE,OAAO,2BAA2B,CAAC,KAAK,CAAC,CAAC;AAC5C,CAAC;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,MAAM,UAAU,mCAAmC,CACjD,WAAwC;IAExC,KACE,IAAI,SAAS,GAAG,CAAC,EACjB,SAAS,GAAG,qBAAqB,CAAC,MAAM,EACxC,SAAS,EAAE,EACX,CAAC;QACD,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,qBAAqB,CAAC,SAAS,CAAC,CAAC;QACpD,IAAI,WAAW,KAAK,GAAG,EAAE,CAAC;YACxB,MAAM,GAAG,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACtB,GAAG,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;YACnB,OAAO,GAAG,CAAC;QACb,CAAC;QACD,IAAI,WAAW,KAAK,GAAG,EAAE,CAAC;YACxB,MAAM,GAAG,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACtB,GAAG,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;YACpB,OAAO,GAAG,CAAC;QACb,CAAC;IACH,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED
|
|
1
|
+
{"version":3,"file":"rfc4.js","sourceRoot":"","sources":["../../src/types/rfc4.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B;;;;;GAKG;AAEH;;;;;GAKG;AACH,MAAM,CAAN,IAAY,2BAiDX;AAjDD,WAAY,2BAA2B;IACrC,wHAAwH;IACxH,4DAA6B,CAAA;IAC7B,wHAAwH;IACxH,4DAA6B,CAAA;IAC7B,6HAA6H;IAC7H,4EAA6C,CAAA;IAC7C,6HAA6H;IAC7H,4EAA6C,CAAA;IAC7C,qHAAqH;IACrH,0EAA2C,CAAA;IAC3C,qHAAqH;IACrH,0EAA2C,CAAA;IAC3C,oIAAoI;IACpI,oEAAqC,CAAA;IACrC,oIAAoI;IACpI,oEAAqC,CAAA;IACrC,+GAA+G;IAC/G,kEAAmC,CAAA;IACnC,+GAA+G;IAC/G,kEAAmC,CAAA;IACnC,gHAAgH;IAChH,oEAAqC,CAAA;IACrC,gHAAgH;IAChH,oEAAqC,CAAA;IACrC,gLAAgL;IAChL,oEAAqC,CAAA;IACrC,gLAAgL;IAChL,oEAAqC,CAAA;IACrC,4HAA4H;IAC5H,oEAAqC,CAAA;IACrC,4HAA4H;IAC5H,oEAAqC,CAAA;IACrC,wHAAwH;IACxH,sEAAuC,CAAA;IACvC,wHAAwH;IACxH,sEAAuC,CAAA;IACvC,wJAAwJ;IACxJ,wEAAyC,CAAA;IACzC,wJAAwJ;IACxJ,wEAAyC,CAAA;IACzC,yJAAyJ;IACzJ,gEAAiC,CAAA;IACjC,yJAAyJ;IACzJ,gEAAiC,CAAA;IACjC,2HAA2H;IAC3H,0DAA2B,CAAA;IAC3B,2HAA2H;IAC3H,0DAA2B,CAAA;AAC7B,CAAC,EAjDW,2BAA2B,KAA3B,2BAA2B,QAiDtC;AAUD;;GAEG;AACH,MAAM,UAAU,2BAA2B,CACzC,KAAkC;IAElC,OAAO;QACL,IAAI,EAAE,YAAY;QAClB,KAAK;KACN,CAAC;AACJ,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,CAAC,MAAM,GAAG,GAA0C;IACxD,CAAC,EAAE,2BAA2B,CAAC,2BAA2B,CAAC,WAAW,CAAC;IACvE,CAAC,EAAE,2BAA2B,CAC5B,2BAA2B,CAAC,mBAAmB,CAChD;IACD,CAAC,EAAE,2BAA2B,CAC5B,2BAA2B,CAAC,kBAAkB,CAC/C;CACF,CAAC;AAEF;;;;;;;GAOG;AACH,MAAM,CAAC,MAAM,GAAG,GAA0C;IACxD,CAAC,EAAE,2BAA2B,CAAC,2BAA2B,CAAC,WAAW,CAAC;IACvE,CAAC,EAAE,2BAA2B,CAC5B,2BAA2B,CAAC,mBAAmB,CAChD;IACD,CAAC,EAAE,2BAA2B,CAC5B,2BAA2B,CAAC,kBAAkB,CAC/C;CACF,CAAC;AAEF;;GAEG;AACH,MAAM,mBAAmB,GAGrB;IACF,GAAG,EAAE,GAAG;IACR,GAAG,EAAE,GAAG;CACT,CAAC;AAEF;;;;;;GAMG;AACH,MAAM,UAAU,mBAAmB,CACjC,IAAY;IAEZ,MAAM,MAAM,GAAG,mBAAmB,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC;IACvD,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;QACzB,MAAM,SAAS,GAAG,MAAM,CAAC,IAAI,CAAC,mBAAmB,CAAC;aAC/C,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC;aAC3B,IAAI,CAAC,IAAI,CAAC,CAAC;QACd,MAAM,IAAI,KAAK,CACb,2CAA2C,IAAI,KAAK;YAClD,sBAAsB,SAAS,GAAG,CACrC,CAAC;IACJ,CAAC;IACD,OAAO,EAAE,GAAG,MAAM,EAAE,CAAC;AACvB,CAAC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,UAAU,6BAA6B,CAC3C,QAAgB;IAEhB,OAAO,GAAG,CAAC,QAAQ,CAAC,CAAC;AACvB,CAAC;AAED;;;;GAIG;AACH,MAAM,sBAAsB,GAAG,CAAC,CAAC;AAEjC;;;;;;;;;;;;;;;;;;GAkBG;AACH,MAAM,qBAAqB,GAGrB;IACJ;QACE,2BAA2B,CAAC,WAAW;QACvC,2BAA2B,CAAC,WAAW;KACxC;IACD;QACE,2BAA2B,CAAC,mBAAmB;QAC/C,2BAA2B,CAAC,mBAAmB;KAChD;IACD;QACE,2BAA2B,CAAC,kBAAkB;QAC9C,2BAA2B,CAAC,kBAAkB;KAC/C;CACF,CAAC;AAEF;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AACH,MAAM,UAAU,mCAAmC,CACjD,eAAkC;IAElC,IAAI,eAAe,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC/B,MAAM,IAAI,KAAK,CACb,wEAAwE,eAAe,CAAC,MAAM,EAAE,CACjG,CAAC;IACJ,CAAC;IACD,+DAA+D;IAC/D,IAAI,YAAY,GAAG,CAAC,CAAC;IACrB,IAAI,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1C,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,MAAM,EAAE,sBAAsB,CAAC,CAAC;IACnE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;QAC3B,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,CAAC;QAC5C,IAAI,MAAM,GAAG,MAAM,EAAE,CAAC;YACpB,MAAM,GAAG,MAAM,CAAC;YAChB,YAAY,GAAG,CAAC,CAAC;QACnB,CAAC;IACH,CAAC;IAED,mEAAmE;IACnE,MAAM,IAAI,GAAG,qBAAqB,CAAC,YAAY,CAAC,CAAC;IACjD,MAAM,KAAK,GAAG,eAAe,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IACrE,OAAO,2BAA2B,CAAC,KAAK,CAAC,CAAC;AAC5C,CAAC;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,MAAM,UAAU,mCAAmC,CACjD,WAAwC;IAExC,KACE,IAAI,SAAS,GAAG,CAAC,EACjB,SAAS,GAAG,qBAAqB,CAAC,MAAM,EACxC,SAAS,EAAE,EACX,CAAC;QACD,MAAM,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,qBAAqB,CAAC,SAAS,CAAC,CAAC;QACpD,IAAI,WAAW,KAAK,GAAG,EAAE,CAAC;YACxB,MAAM,GAAG,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACtB,GAAG,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;YACnB,OAAO,GAAG,CAAC;QACb,CAAC;QACD,IAAI,WAAW,KAAK,GAAG,EAAE,CAAC;YACxB,MAAM,GAAG,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACtB,GAAG,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;YACpB,OAAO,GAAG,CAAC;QACb,CAAC;IACH,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,8BAA8B,CAC5C,QAAiC,EACjC,WAAkC;IAElC,OAAO;QACL,GAAG,QAAQ;QACX,WAAW,EAAE;YACX,IAAI,EAAE,WAAW,CAAC,IAAI;YACtB,KAAK,EAAE,WAAW,CAAC,KAAK;SACzB;KACF,CAAC;AACJ,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,mCAAmC,CACjD,QAAiC;IAEjC,MAAM,EAAE,WAAW,EAAE,YAAY,EAAE,GAAG,IAAI,EAAE,GAAG,QAAQ,CAAC;IACxD,OAAO,IAAI,CAAC;AACd,CAAC"}
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@@ -7,8 +7,23 @@ export declare enum NgffVersion {
|
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7
7
|
V03 = "0.3",
|
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8
8
|
V04 = "0.4",
|
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9
9
|
V05 = "0.5",
|
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10
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-
|
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10
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+
V06 = "0.6",
|
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11
|
+
/**
|
|
12
|
+
* Draft development version of the OME-Zarr v0.6 (RFC-5) spec. Stores are
|
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13
|
+
* tagged on disk with this string while the spec is still in development;
|
|
14
|
+
* see {@link V06_ONDISK_VERSION}. Temporary — tracks the upstream dev release.
|
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15
|
+
*/
|
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16
|
+
V06dev4 = "0.6.dev4",
|
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17
|
+
LATEST = "0.6.dev4"
|
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11
18
|
}
|
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19
|
+
/**
|
|
20
|
+
* The on-disk `ome.version` string written for OME-Zarr v0.6. The v0.6 / RFC-5
|
|
21
|
+
* spec is still a draft, so stores are tagged with the development version
|
|
22
|
+
* `0.6.dev4` even though the library's public `version` option is `"0.6"`.
|
|
23
|
+
* This is a temporary shim that tracks the upstream spec's dev releases;
|
|
24
|
+
* mirrors the Python port writing `"0.6.dev4"` for a requested version `"0.6"`.
|
|
25
|
+
*/
|
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26
|
+
export declare const V06_ONDISK_VERSION: NgffVersion;
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|
12
27
|
/**
|
|
13
28
|
* Supported NGFF specification versions
|
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14
29
|
*/
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@@ -17,4 +32,11 @@ export declare const SUPPORTED_VERSIONS: readonly NgffVersion[];
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17
32
|
* Check if a version string is supported
|
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18
33
|
*/
|
|
19
34
|
export declare function isSupportedVersion(version: string): version is NgffVersion;
|
|
35
|
+
/**
|
|
36
|
+
* Whether an `ome.version` string identifies an OME-Zarr v0.6 store, including
|
|
37
|
+
* draft development versions such as `0.6.dev4`. Mirrors the Python port's
|
|
38
|
+
* `version.startswith("0.6")` check so a store written by either implementation
|
|
39
|
+
* reads back as v0.6.
|
|
40
|
+
*/
|
|
41
|
+
export declare function isV06Version(version: string): boolean;
|
|
20
42
|
//# sourceMappingURL=supported_versions.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"supported_versions.d.ts","sourceRoot":"","sources":["../../src/types/supported_versions.ts"],"names":[],"mappings":"AAGA;;GAEG;AAEH,oBAAY,WAAW;IACrB,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,
|
|
1
|
+
{"version":3,"file":"supported_versions.d.ts","sourceRoot":"","sources":["../../src/types/supported_versions.ts"],"names":[],"mappings":"AAGA;;GAEG;AAEH,oBAAY,WAAW;IACrB,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX;;;;OAIG;IACH,OAAO,aAAa;IACpB,MAAM,aAAa;CACpB;AAED;;;;;;GAMG;AACH,eAAO,MAAM,kBAAkB,EAAE,WAAiC,CAAC;AAEnE;;GAEG;AACH,eAAO,MAAM,kBAAkB,EAAE,SAAS,WAAW,EAQ3C,CAAC;AAEX;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,IAAI,WAAW,CAE1E;AAED;;;;;GAKG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAErD"}
|
|
@@ -10,8 +10,23 @@ export var NgffVersion;
|
|
|
10
10
|
NgffVersion["V03"] = "0.3";
|
|
11
11
|
NgffVersion["V04"] = "0.4";
|
|
12
12
|
NgffVersion["V05"] = "0.5";
|
|
13
|
-
NgffVersion["
|
|
13
|
+
NgffVersion["V06"] = "0.6";
|
|
14
|
+
/**
|
|
15
|
+
* Draft development version of the OME-Zarr v0.6 (RFC-5) spec. Stores are
|
|
16
|
+
* tagged on disk with this string while the spec is still in development;
|
|
17
|
+
* see {@link V06_ONDISK_VERSION}. Temporary — tracks the upstream dev release.
|
|
18
|
+
*/
|
|
19
|
+
NgffVersion["V06dev4"] = "0.6.dev4";
|
|
20
|
+
NgffVersion["LATEST"] = "0.6.dev4";
|
|
14
21
|
})(NgffVersion || (NgffVersion = {}));
|
|
22
|
+
/**
|
|
23
|
+
* The on-disk `ome.version` string written for OME-Zarr v0.6. The v0.6 / RFC-5
|
|
24
|
+
* spec is still a draft, so stores are tagged with the development version
|
|
25
|
+
* `0.6.dev4` even though the library's public `version` option is `"0.6"`.
|
|
26
|
+
* This is a temporary shim that tracks the upstream spec's dev releases;
|
|
27
|
+
* mirrors the Python port writing `"0.6.dev4"` for a requested version `"0.6"`.
|
|
28
|
+
*/
|
|
29
|
+
export const V06_ONDISK_VERSION = NgffVersion.V06dev4;
|
|
15
30
|
/**
|
|
16
31
|
* Supported NGFF specification versions
|
|
17
32
|
*/
|
|
@@ -21,6 +36,8 @@ export const SUPPORTED_VERSIONS = [
|
|
|
21
36
|
NgffVersion.V03,
|
|
22
37
|
NgffVersion.V04,
|
|
23
38
|
NgffVersion.V05,
|
|
39
|
+
NgffVersion.V06,
|
|
40
|
+
NgffVersion.V06dev4,
|
|
24
41
|
];
|
|
25
42
|
/**
|
|
26
43
|
* Check if a version string is supported
|
|
@@ -28,4 +45,13 @@ export const SUPPORTED_VERSIONS = [
|
|
|
28
45
|
export function isSupportedVersion(version) {
|
|
29
46
|
return Object.values(NgffVersion).includes(version);
|
|
30
47
|
}
|
|
48
|
+
/**
|
|
49
|
+
* Whether an `ome.version` string identifies an OME-Zarr v0.6 store, including
|
|
50
|
+
* draft development versions such as `0.6.dev4`. Mirrors the Python port's
|
|
51
|
+
* `version.startswith("0.6")` check so a store written by either implementation
|
|
52
|
+
* reads back as v0.6.
|
|
53
|
+
*/
|
|
54
|
+
export function isV06Version(version) {
|
|
55
|
+
return version.startsWith("0.6");
|
|
56
|
+
}
|
|
31
57
|
//# sourceMappingURL=supported_versions.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"supported_versions.js","sourceRoot":"","sources":["../../src/types/supported_versions.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAE/B;;GAEG;AAEH,MAAM,CAAN,IAAY,
|
|
1
|
+
{"version":3,"file":"supported_versions.js","sourceRoot":"","sources":["../../src/types/supported_versions.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAE/B;;GAEG;AAEH,MAAM,CAAN,IAAY,WAcX;AAdD,WAAY,WAAW;IACrB,0BAAW,CAAA;IACX,0BAAW,CAAA;IACX,0BAAW,CAAA;IACX,0BAAW,CAAA;IACX,0BAAW,CAAA;IACX,0BAAW,CAAA;IACX;;;;OAIG;IACH,mCAAoB,CAAA;IACpB,kCAAmB,CAAA;AACrB,CAAC,EAdW,WAAW,KAAX,WAAW,QActB;AAED;;;;;;GAMG;AACH,MAAM,CAAC,MAAM,kBAAkB,GAAgB,WAAW,CAAC,OAAO,CAAC;AAEnE;;GAEG;AACH,MAAM,CAAC,MAAM,kBAAkB,GAA2B;IACxD,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,OAAO;CACX,CAAC;AAEX;;GAEG;AACH,MAAM,UAAU,kBAAkB,CAAC,OAAe;IAChD,OAAO,MAAM,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,OAAsB,CAAC,CAAC;AACrE,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,YAAY,CAAC,OAAe;IAC1C,OAAO,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC;AACnC,CAAC"}
|