@fideus-labs/ngff-zarr 0.2.8 → 0.4.0

package/esm/process/to_multiscales-shared.js.map

@@ -1 +1 @@
-{"version":3,"file":"to_multiscales-shared.js","sourceRoot":"","sources":["../../src/process/to_multiscales-shared.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAU/B,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,GAClB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,iBAAiB,EAAE,MAAM,6BAA6B,CAAC;AAiBhE;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,KAAgB,EAChB,OAA6B,EAC7B,iBAAqC;IAErC,MAAM,EACJ,YAAY,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,EACrB,MAAM,GAAG,OAAO,CAAC,gBAAgB,EACjC,MAAM,EAAE,OAAO,GAChB,GAAG,OAAO,CAAC;IAEZ,IAAI,MAAmB,CAAC;IAExB,iDAAiD;IACjD,IACE,MAAM,KAAK,OAAO,CAAC,gBAAgB;QACnC,MAAM,KAAK,OAAO,CAAC,kBAAkB;QACrC,MAAM,KAAK,OAAO,CAAC,mBAAmB,EACtC,CAAC;QACD,6CAA6C;QAC7C,MAAM,SAAS,GAAG,MAAM,KAAK,OAAO,CAAC,gBAAgB;YACnD,CAAC,CAAC,UAAU;YACZ,CAAC,CAAC,MAAM,KAAK,OAAO,CAAC,kBAAkB;gBACvC,CAAC,CAAC,YAAY;gBACd,CAAC,CAAC,aAAa,CAAC;QAElB,MAAM,GAAG,MAAM,iBAAiB,CAC9B,KAAK,EACL,YAAmD,EACnD,SAAS,CACV,CAAC;IACJ,CAAC;SAAM,CAAC;QACN,gEAAgE;QAChE,MAAM,GAAG,CAAC,KAAK,CAAC,CAAC;IACnB,CAAC;IAED,oCAAoC;IACpC,MAAM,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;QAClC,IAAI,GAAG,KAAK,GAAG,IAAI,GAAG,KAAK,GAAG,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YAC9C,OAAO,UAAU,CACf,GAAsB,EACtB,OAAO,EACP,KAAK,CAAC,SAAS,EAAE,CAAC,GAAG,CAAC,CACvB,CAAC;QACJ,CAAC;aAAM,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YACvB,OAAO,UAAU,CAAC,GAAU,EAAE,SAAS,CAAC,CAAC;QAC3C,CAAC;aAAM,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YACvB,OAAO,UAAU,CAAC,GAAU,EAAE,MAAM,CAAC,CAAC;QACxC,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,0BAA0B,GAAG,EAAE,CAAC,CAAC;QACnD,CAAC;IACH,CAAC,CAAC,CAAC;IAEH,iCAAiC;IACjC,MAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,KAAK,EAAE,EAAE;QACzC,OAAO,aAAa,CAClB,QAAQ,KAAK,EAAE,EACf,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,EACrC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAC5C,CAAC;IACJ,CAAC,CAAC,CAAC;IAEH,0CAA0C;IAC1C,MAAM,cAAc,GAAG,iBAAiB,CAAC,MAAM,CAAC,CAAC;IACjD,MAAM,QAAQ,GAAG,cAAc,CAAC,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;IAC5D,oFAAoF;IACpF,uFAAuF;IACvF,QAAQ,CAAC,IAAI,GAAG,MAAM,CAAC;IACvB,IAAI,cAAc,EAAE,CAAC;QACnB,QAAQ,CAAC,QAAQ,GAAG,cAAc,CAAC;IACrC,CAAC;IAED,OAAO,iBAAiB,CAAC,MAAM,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,CAAC,CAAC;AACnE,CAAC"}
+{"version":3,"file":"to_multiscales-shared.js","sourceRoot":"","sources":["../../src/process/to_multiscales-shared.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAU/B,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9C,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,GAClB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,iBAAiB,EAAE,MAAM,6BAA6B,CAAC;AAiBhE;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,KAAgB,EAChB,OAA6B,EAC7B,iBAAqC;IAErC,MAAM,EACJ,YAAY,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,EACrB,MAAM,GAAG,OAAO,CAAC,gBAAgB,EACjC,MAAM,EAAE,OAAO,GAChB,GAAG,OAAO,CAAC;IAEZ,IAAI,MAAmB,CAAC;IAExB,iDAAiD;IACjD,IACE,MAAM,KAAK,OAAO,CAAC,gBAAgB;QACnC,MAAM,KAAK,OAAO,CAAC,kBAAkB;QACrC,MAAM,KAAK,OAAO,CAAC,mBAAmB,EACtC,CAAC;QACD,6CAA6C;QAC7C,MAAM,SAAS,GAAG,MAAM,KAAK,OAAO,CAAC,gBAAgB;YACnD,CAAC,CAAC,UAAU;YACZ,CAAC,CAAC,MAAM,KAAK,OAAO,CAAC,kBAAkB;gBACvC,CAAC,CAAC,YAAY;gBACd,CAAC,CAAC,aAAa,CAAC;QAElB,MAAM,GAAG,MAAM,iBAAiB,CAC9B,KAAK,EACL,YAAmD,EACnD,SAAS,CACV,CAAC;IACJ,CAAC;SAAM,CAAC;QACN,gEAAgE;QAChE,MAAM,GAAG,CAAC,KAAK,CAAC,CAAC;IACnB,CAAC;IAED,sEAAsE;IACtE,MAAM,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;QAClC,IAAI,GAAG,KAAK,GAAG,IAAI,GAAG,KAAK,GAAG,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YAC9C,MAAM,WAAW,GAAG,KAAK,CAAC,gBAAgB,EAAE,CAAC,GAAG,CAAC,CAAC;YAClD,OAAO,UAAU,CACf,GAAsB,EACtB,OAAO,EACP,KAAK,CAAC,SAAS,EAAE,CAAC,GAAG,CAAC,EACtB,WAAW,CACZ,CAAC;QACJ,CAAC;aAAM,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YACvB,OAAO,UAAU,CAAC,GAAU,EAAE,SAAS,CAAC,CAAC;QAC3C,CAAC;aAAM,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YACvB,OAAO,UAAU,CAAC,GAAU,EAAE,MAAM,CAAC,CAAC;QACxC,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,0BAA0B,GAAG,EAAE,CAAC,CAAC;QACnD,CAAC;IACH,CAAC,CAAC,CAAC;IAEH,iCAAiC;IACjC,MAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,KAAK,EAAE,EAAE;QACzC,OAAO,aAAa,CAClB,QAAQ,KAAK,EAAE,EACf,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,EACrC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAC5C,CAAC;IACJ,CAAC,CAAC,CAAC;IAEH,0CAA0C;IAC1C,MAAM,cAAc,GAAG,iBAAiB,CAAC,MAAM,CAAC,CAAC;IACjD,MAAM,QAAQ,GAAG,cAAc,CAAC,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;IAC5D,oFAAoF;IACpF,uFAAuF;IACvF,QAAQ,CAAC,IAAI,GAAG,MAAM,CAAC;IACvB,IAAI,cAAc,EAAE,CAAC;QACnB,QAAQ,CAAC,QAAQ,GAAG,cAAc,CAAC;IACrC,CAAC;IAED,OAAO,iBAAiB,CAAC,MAAM,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,CAAC,CAAC;AACnE,CAAC"}

package/esm/types/supported_versions.d.ts

@@ -0,0 +1,20 @@
+/**
+ * Constants for ngff-zarr package.
+ */
+export declare enum NgffVersion {
+    V01 = "0.1",
+    V02 = "0.2",
+    V03 = "0.3",
+    V04 = "0.4",
+    V05 = "0.5",
+    LATEST = "0.5"
+}
+/**
+ * Supported NGFF specification versions
+ */
+export declare const SUPPORTED_VERSIONS: readonly NgffVersion[];
+/**
+ * Check if a version string is supported
+ */
+export declare function isSupportedVersion(version: string): version is NgffVersion;
+//# sourceMappingURL=supported_versions.d.ts.map

package/esm/types/supported_versions.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"supported_versions.d.ts","sourceRoot":"","sources":["../../src/types/supported_versions.ts"],"names":[],"mappings":"AAGA;;GAEG;AAEH,oBAAY,WAAW;IACrB,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,MAAM,QAAQ;CACf;AAED;;GAEG;AACH,eAAO,MAAM,kBAAkB,EAAE,SAAS,WAAW,EAM3C,CAAC;AAEX;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,IAAI,WAAW,CAE1E"}

package/esm/types/supported_versions.js

@@ -0,0 +1,31 @@
+// SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
+// SPDX-License-Identifier: MIT
+/**
+ * Constants for ngff-zarr package.
+ */
+export var NgffVersion;
+(function (NgffVersion) {
+    NgffVersion["V01"] = "0.1";
+    NgffVersion["V02"] = "0.2";
+    NgffVersion["V03"] = "0.3";
+    NgffVersion["V04"] = "0.4";
+    NgffVersion["V05"] = "0.5";
+    NgffVersion["LATEST"] = "0.5";
+})(NgffVersion || (NgffVersion = {}));
+/**
+ * Supported NGFF specification versions
+ */
+export const SUPPORTED_VERSIONS = [
+    NgffVersion.V01,
+    NgffVersion.V02,
+    NgffVersion.V03,
+    NgffVersion.V04,
+    NgffVersion.V05,
+];
+/**
+ * Check if a version string is supported
+ */
+export function isSupportedVersion(version) {
+    return Object.values(NgffVersion).includes(version);
+}
+//# sourceMappingURL=supported_versions.js.map

package/esm/types/supported_versions.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"supported_versions.js","sourceRoot":"","sources":["../../src/types/supported_versions.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAE/B;;GAEG;AAEH,MAAM,CAAN,IAAY,WAOX;AAPD,WAAY,WAAW;IACrB,0BAAW,CAAA;IACX,0BAAW,CAAA;IACX,0BAAW,CAAA;IACX,0BAAW,CAAA;IACX,0BAAW,CAAA;IACX,6BAAc,CAAA;AAChB,CAAC,EAPW,WAAW,KAAX,WAAW,QAOtB;AAED;;GAEG;AACH,MAAM,CAAC,MAAM,kBAAkB,GAA2B;IACxD,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,GAAG;IACf,WAAW,CAAC,GAAG;CACP,CAAC;AAEX;;GAEG;AACH,MAAM,UAAU,kBAAkB,CAAC,OAAe;IAChD,OAAO,MAAM,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,OAAsB,CAAC,CAAC;AACrE,CAAC"}

package/esm/types/zarr_metadata.d.ts

@@ -1,8 +1,20 @@
 import type { AxesType, SupportedDims, Units } from "./units.js";
+import { NgffVersion } from "./supported_versions.js";
+import type { NgffImage } from "./ngff_image.js";
+import type { AnatomicalOrientation } from "./rfc4.js";
+/**
+ * Orientation metadata for spatial axes (RFC 4).
+ * This interface represents the serialized form in the zarr metadata.
+ */
+export interface AxisOrientation {
+    type: string;
+    value: string;
+}
 export interface Axis {
     name: SupportedDims;
     type: AxesType;
     unit: Units | undefined;
+    orientation?: AxisOrientation | AnatomicalOrientation | undefined;
 }
 export interface Identity {
     type: "identity";
@@ -41,7 +53,10 @@ export interface MethodMetadata {
     method: string;
     version: string;
 }
-export interface Metadata {
+/**
+ * OME-Zarr Metadata interface for data transfer
+ */
+export interface MetadataInterface {
     axes: Axis[];
     datasets: Dataset[];
     coordinateTransformations: Transform[] | undefined;
@@ -51,6 +66,33 @@ export interface Metadata {
     type?: string;
     metadata?: MethodMetadata;
 }
+/**
+ * Result from parsing zarr attributes
+ */
+export interface FromZarrAttrsResult {
+    metadata: MetadataInterface;
+    images: NgffImage[];
+}
+export type Metadata = MetadataInterface;
+/**
+ * Result from parsing zarr attributes
+ */
+export interface FromZarrAttrsResult {
+    metadata: MetadataInterface;
+    images: NgffImage[];
+}
+/**
+ * Supported dimension names for backward compatibility
+ */
+export declare const SUPPORTED_DIMS: readonly SupportedDims[];
+/**
+ * Create a Metadata object with the specified version
+ */
+export declare function createMetadataWithVersion(metadata: MetadataInterface, targetVersion: string | NgffVersion): MetadataInterface;
+/**
+ * Get dimension names from metadata axes
+ */
+export declare function getDimensionNames(metadata: MetadataInterface): string[];
 export declare function validateColor(color: string): void;
 export declare function createScale(scale: number[]): Scale;
 export declare function createTranslation(translation: number[]): Translation;

package/esm/types/zarr_metadata.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"zarr_metadata.d.ts","sourceRoot":"","sources":["../../src/types/zarr_metadata.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,QAAQ,EAAE,aAAa,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AAEjE,MAAM,WAAW,IAAI;IACnB,IAAI,EAAE,aAAa,CAAC;IACpB,IAAI,EAAE,QAAQ,CAAC;IACf,IAAI,EAAE,KAAK,GAAG,SAAS,CAAC;CACzB;AAED,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,UAAU,CAAC;CAClB;AAED,MAAM,WAAW,KAAK;IACpB,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,IAAI,EAAE,OAAO,CAAC;CACf;AAED,MAAM,WAAW,WAAW;IAC1B,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,IAAI,EAAE,aAAa,CAAC;CACrB;AAED,MAAM,MAAM,SAAS,GAAG,KAAK,GAAG,WAAW,CAAC;AAE5C,MAAM,WAAW,OAAO;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,yBAAyB,EAAE,SAAS,EAAE,CAAC;CACxC;AAED,MAAM,WAAW,WAAW;IAC1B,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,WAAW,CAAC;IACpB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,MAAM,WAAW,KAAK;IACpB,QAAQ,EAAE,YAAY,EAAE,CAAC;IACzB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,cAAc;IAC7B,WAAW,EAAE,MAAM,CAAC;IACpB,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,IAAI,EAAE,CAAC;IACb,QAAQ,EAAE,OAAO,EAAE,CAAC;IACpB,yBAAyB,EAAE,SAAS,EAAE,GAAG,SAAS,CAAC;IACnD,KAAK,EAAE,KAAK,GAAG,SAAS,CAAC;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,cAAc,CAAC;CAC3B;AAED,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAIjD;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,KAAK,CAElD;AAED,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,WAAW,CAEpE;AAED,wBAAgB,cAAc,IAAI,QAAQ,CAEzC"}
+{"version":3,"file":"zarr_metadata.d.ts","sourceRoot":"","sources":["../../src/types/zarr_metadata.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,QAAQ,EAAE,aAAa,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AACjE,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,WAAW,CAAC;AAEvD;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,IAAI;IACnB,IAAI,EAAE,aAAa,CAAC;IACpB,IAAI,EAAE,QAAQ,CAAC;IACf,IAAI,EAAE,KAAK,GAAG,SAAS,CAAC;IACxB,WAAW,CAAC,EAAE,eAAe,GAAG,qBAAqB,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,UAAU,CAAC;CAClB;AAED,MAAM,WAAW,KAAK;IACpB,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,IAAI,EAAE,OAAO,CAAC;CACf;AAED,MAAM,WAAW,WAAW;IAC1B,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,IAAI,EAAE,aAAa,CAAC;CACrB;AAED,MAAM,MAAM,SAAS,GAAG,KAAK,GAAG,WAAW,CAAC;AAE5C,MAAM,WAAW,OAAO;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,yBAAyB,EAAE,SAAS,EAAE,CAAC;CACxC;AAED,MAAM,WAAW,WAAW;IAC1B,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,WAAW,CAAC;IACpB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,MAAM,WAAW,KAAK;IACpB,QAAQ,EAAE,YAAY,EAAE,CAAC;IACzB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,cAAc;IAC7B,WAAW,EAAE,MAAM,CAAC;IACpB,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;CACjB;AAED;;GAEG;AACH,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,IAAI,EAAE,CAAC;IACb,QAAQ,EAAE,OAAO,EAAE,CAAC;IACpB,yBAAyB,EAAE,SAAS,EAAE,GAAG,SAAS,CAAC;IACnD,KAAK,EAAE,KAAK,GAAG,SAAS,CAAC;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,cAAc,CAAC;CAC3B;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,QAAQ,EAAE,iBAAiB,CAAC;IAC5B,MAAM,EAAE,SAAS,EAAE,CAAC;CACrB;AAGD,MAAM,MAAM,QAAQ,GAAG,iBAAiB,CAAC;AAEzC;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,QAAQ,EAAE,iBAAiB,CAAC;IAC5B,MAAM,EAAE,SAAS,EAAE,CAAC;CACrB;AAED;;GAEG;AACH,eAAO,MAAM,cAAc,EAAE,SAAS,aAAa,EAMzC,CAAC;AAEX;;GAEG;AACH,wBAAgB,yBAAyB,CACvC,QAAQ,EAAE,iBAAiB,EAC3B,aAAa,EAAE,MAAM,GAAG,WAAW,GAClC,iBAAiB,CAoBnB;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,iBAAiB,GAAG,MAAM,EAAE,CAEvE;AAED,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAIjD;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,KAAK,CAElD;AAED,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,WAAW,CAEpE;AAED,wBAAgB,cAAc,IAAI,QAAQ,CAEzC"}

package/esm/types/zarr_metadata.js

@@ -1,3 +1,43 @@
+import { NgffVersion } from "./supported_versions.js";
+/**
+ * Supported dimension names for backward compatibility
+ */
+export const SUPPORTED_DIMS = [
+    "t",
+    "c",
+    "z",
+    "y",
+    "x",
+];
+/**
+ * Create a Metadata object with the specified version
+ */
+export function createMetadataWithVersion(metadata, targetVersion) {
+    const version = typeof targetVersion === "string"
+        ? targetVersion
+        : targetVersion;
+    if (version === NgffVersion.V04) {
+        return {
+            ...metadata,
+            version: "0.4",
+        };
+    }
+    else if (version === NgffVersion.V05) {
+        return {
+            ...metadata,
+            version: "0.5",
+        };
+    }
+    else {
+        throw new Error(`Unsupported version conversion: ${metadata.version} -> ${version}`);
+    }
+}
+/**
+ * Get dimension names from metadata axes
+ */
+export function getDimensionNames(metadata) {
+    return metadata.axes.map((ax) => ax.name);
+}
 export function validateColor(color) {
     if (!/^[0-9A-Fa-f]{6}$/.test(color)) {
         throw new Error(`Invalid color '${color}'. Must be 6 hex digits.`);

package/esm/types/zarr_metadata.js.map

@@ -1 +1 @@
-{"version":3,"file":"zarr_metadata.js","sourceRoot":"","sources":["../../src/types/zarr_metadata.ts"],"names":[],"mappings":"AAmEA,MAAM,UAAU,aAAa,CAAC,KAAa;IACzC,IAAI,CAAC,kBAAkB,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;QACpC,MAAM,IAAI,KAAK,CAAC,kBAAkB,KAAK,0BAA0B,CAAC,CAAC;IACrE,CAAC;AACH,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,KAAe;IACzC,OAAO,EAAE,KAAK,EAAE,CAAC,GAAG,KAAK,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC;AAC9C,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,WAAqB;IACrD,OAAO,EAAE,WAAW,EAAE,CAAC,GAAG,WAAW,CAAC,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC;AAChE,CAAC;AAED,MAAM,UAAU,cAAc;IAC5B,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,CAAC;AAC9B,CAAC"}
+{"version":3,"file":"zarr_metadata.js","sourceRoot":"","sources":["../../src/types/zarr_metadata.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AAmGtD;;GAEG;AACH,MAAM,CAAC,MAAM,cAAc,GAA6B;IACtD,GAAG;IACH,GAAG;IACH,GAAG;IACH,GAAG;IACH,GAAG;CACK,CAAC;AAEX;;GAEG;AACH,MAAM,UAAU,yBAAyB,CACvC,QAA2B,EAC3B,aAAmC;IAEnC,MAAM,OAAO,GAAG,OAAO,aAAa,KAAK,QAAQ;QAC/C,CAAC,CAAE,aAA6B;QAChC,CAAC,CAAC,aAAa,CAAC;IAElB,IAAI,OAAO,KAAK,WAAW,CAAC,GAAG,EAAE,CAAC;QAChC,OAAO;YACL,GAAG,QAAQ;YACX,OAAO,EAAE,KAAK;SACf,CAAC;IACJ,CAAC;SAAM,IAAI,OAAO,KAAK,WAAW,CAAC,GAAG,EAAE,CAAC;QACvC,OAAO;YACL,GAAG,QAAQ;YACX,OAAO,EAAE,KAAK;SACf,CAAC;IACJ,CAAC;SAAM,CAAC;QACN,MAAM,IAAI,KAAK,CACb,mCAAmC,QAAQ,CAAC,OAAO,OAAO,OAAO,EAAE,CACpE,CAAC;IACJ,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,iBAAiB,CAAC,QAA2B;IAC3D,OAAO,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC;AAC5C,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,KAAa;IACzC,IAAI,CAAC,kBAAkB,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;QACpC,MAAM,IAAI,KAAK,CAAC,kBAAkB,KAAK,0BAA0B,CAAC,CAAC;IACrE,CAAC;AACH,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,KAAe;IACzC,OAAO,EAAE,KAAK,EAAE,CAAC,GAAG,KAAK,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC;AAC9C,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,WAAqB;IACrD,OAAO,EAAE,WAAW,EAAE,CAAC,GAAG,WAAW,CAAC,EAAE,IAAI,EAAE,aAAa,EAAE,CAAC;AAChE,CAAC;AAED,MAAM,UAAU,cAAc;IAC5B,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,CAAC;AAC9B,CAAC"}

package/esm/utils/compute_omero.d.ts

@@ -0,0 +1,89 @@
+import type { NgffImage } from "../types/ngff_image.js";
+import type { Multiscales } from "../types/multiscales.js";
+import type { Omero } from "../types/zarr_metadata.js";
+/**
+ * Glasbey color palette from colorcet's glasbey_hv.
+ * Extended from HoloViews default colors using the Glasbey algorithm
+ * for maximum distinguishability across 256 categorical colors.
+ * See: https://colorcet.holoviz.org/user_guide/Categorical.html
+ */
+export declare const GLASBEY_COLORS: readonly string[];
+/**
+ * Get default colors for channels.
+ *
+ * For a single channel, returns white (FFFFFF).
+ * For multiple channels, uses the Glasbey color progression.
+ */
+export declare function getDefaultColors(nChannels: number): string[];
+/**
+ * Options for computing OMERO metadata.
+ */
+export interface ComputeOmeroOptions {
+    /** Tuple of (low, high) quantile values for the display window. Default is [0.02, 0.98]. */
+    quantiles?: [number, number];
+    /** Optional list of hex color strings (without #) for each channel. */
+    colors?: string[];
+    /** Optional list of label strings for each channel. */
+    labels?: string[];
+}
+/**
+ * Compute OMERO metadata from an NgffImage.
+ *
+ * This function computes visualization parameters (OMERO metadata) from image data:
+ * - min/max: The actual data range
+ * - start/end: Display window based on quantiles (default 2% and 98%)
+ *
+ * For multi-channel images (with 'c' dimension), statistics are computed
+ * separately for each channel, resulting in per-channel OMERO windows.
+ *
+ * Memory requirements: This function loads the entire image data into memory
+ * for statistics computation. For large images, use the lowest resolution
+ * image from a multiscales pyramid.
+ *
+ * Edge cases:
+ * - If all values in a channel are NaN, the statistics will be NaN.
+ * - If a channel has constant values, min/max/start/end will all be the same.
+ *
+ * @param image - The NgffImage to compute metadata for
+ * @param options - Optional configuration for quantiles, colors, and labels
+ *   - quantiles: Tuple of (low, high) quantile values. Must be between 0 and 1,
+ *                with low < high. Default is [0.02, 0.98] for 2% and 98% quantiles.
+ *   - colors: List of hex color strings (without #) for each channel.
+ *             Must be 6-digit hexadecimal strings (e.g., "FF0000" for red).
+ *             If not provided, uses white for single channel or Glasbey
+ *             progression for multi-channel.
+ *   - labels: List of label strings for each channel.
+ *             If not provided, uses empty strings.
+ * @returns Promise resolving to Omero metadata with computed window parameters
+ * @throws {Error} If quantiles are invalid, colors are invalid format,
+ *                 or not enough colors/labels provided.
+ *
+ * @example
+ * ```ts
+ * const omero = await computeOmeroFromNgffImage(image);
+ * multiscales.metadata.omero = omero;
+ * ```
+ */
+export declare function computeOmeroFromNgffImage(image: NgffImage, options?: ComputeOmeroOptions): Promise<Omero>;
+/**
+ * Options for computing OMERO metadata from multiscales.
+ */
+export interface ComputeOmeroFromMultiscalesOptions extends ComputeOmeroOptions {
+    /**
+     * If true (default), use the lowest resolution (smallest) image for faster computation.
+     * If false, use the highest resolution (largest) image for more accurate statistics.
+     */
+    useLowestResolution?: boolean;
+}
+/**
+ * Compute OMERO metadata from a Multiscales object.
+ *
+ * This is a convenience function that computes OMERO metadata from the
+ * highest or lowest resolution image in a multiscales pyramid.
+ *
+ * @param multiscales - The Multiscales object to compute metadata for
+ * @param options - Optional configuration for quantiles, colors, labels, and resolution
+ * @returns Promise resolving to Omero metadata with computed window parameters
+ */
+export declare function computeOmeroFromMultiscales(multiscales: Multiscales, options?: ComputeOmeroFromMultiscalesOptions): Promise<Omero>;
+//# sourceMappingURL=compute_omero.d.ts.map

package/esm/utils/compute_omero.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"compute_omero.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACxD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,KAAK,EACV,KAAK,EAGN,MAAM,2BAA2B,CAAC;AAEnC;;;;;GAKG;AACH,eAAO,MAAM,cAAc,EAAE,SAAS,MAAM,EAiQlC,CAAC;AAEX;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,EAAE,CAS5D;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,4FAA4F;IAC5F,SAAS,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC7B,uEAAuE;IACvE,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;IAClB,uDAAuD;IACvD,MAAM,CAAC,EAAE,MAAM,EAAE,CAAC;CACnB;AAwJD;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAqCG;AACH,wBAAsB,yBAAyB,CAC7C,KAAK,EAAE,SAAS,EAChB,OAAO,GAAE,mBAAwB,GAChC,OAAO,CAAC,KAAK,CAAC,CAqFhB;AAED;;GAEG;AACH,MAAM,WAAW,kCACf,SAAQ,mBAAmB;IAC3B;;;OAGG;IACH,mBAAmB,CAAC,EAAE,OAAO,CAAC;CAC/B;AAED;;;;;;;;;GASG;AACH,wBAAsB,2BAA2B,CAC/C,WAAW,EAAE,WAAW,EACxB,OAAO,GAAE,kCAAuC,GAC/C,OAAO,CAAC,KAAK,CAAC,CAwBhB"}