@fideus-labs/ngff-zarr 0.2.4 → 0.2.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (192) hide show
  1. package/README.md +268 -76
  2. package/esm/browser-mod.js +1 -0
  3. package/esm/browser-mod.js.map +1 -0
  4. package/esm/io/from_ngff_zarr.d.ts.map +1 -1
  5. package/esm/io/from_ngff_zarr.js +23 -7
  6. package/esm/io/from_ngff_zarr.js.map +1 -0
  7. package/esm/io/hcs.js +1 -0
  8. package/esm/io/hcs.js.map +1 -0
  9. package/esm/io/itk_image_to_ngff_image.js +1 -0
  10. package/esm/io/itk_image_to_ngff_image.js.map +1 -0
  11. package/esm/io/ngff_image_to_itk_image.js +1 -0
  12. package/esm/io/ngff_image_to_itk_image.js.map +1 -0
  13. package/esm/io/to_ngff_image.js +1 -0
  14. package/esm/io/to_ngff_image.js.map +1 -0
  15. package/esm/io/to_ngff_zarr.d.ts.map +1 -1
  16. package/esm/io/to_ngff_zarr.js +35 -26
  17. package/esm/io/to_ngff_zarr.js.map +1 -0
  18. package/esm/methods/itkwasm-browser.js +1 -0
  19. package/esm/methods/itkwasm-browser.js.map +1 -0
  20. package/esm/methods/itkwasm-node.js +1 -0
  21. package/esm/methods/itkwasm-node.js.map +1 -0
  22. package/esm/methods/itkwasm-shared.js +1 -0
  23. package/esm/methods/itkwasm-shared.js.map +1 -0
  24. package/esm/methods/itkwasm.d.ts +14 -0
  25. package/esm/methods/itkwasm.d.ts.map +1 -0
  26. package/esm/methods/itkwasm.js +18 -0
  27. package/esm/methods/itkwasm.js.map +1 -0
  28. package/esm/mod.js +1 -0
  29. package/esm/mod.js.map +1 -0
  30. package/esm/process/to_multiscales-browser.js +1 -0
  31. package/esm/process/to_multiscales-browser.js.map +1 -0
  32. package/esm/process/to_multiscales-node.js +1 -0
  33. package/esm/process/to_multiscales-node.js.map +1 -0
  34. package/esm/process/to_multiscales-shared.js +1 -0
  35. package/esm/process/to_multiscales-shared.js.map +1 -0
  36. package/esm/schemas/coordinate_systems.js +1 -0
  37. package/esm/schemas/coordinate_systems.js.map +1 -0
  38. package/esm/schemas/index.js +1 -0
  39. package/esm/schemas/index.js.map +1 -0
  40. package/esm/schemas/methods.js +1 -0
  41. package/esm/schemas/methods.js.map +1 -0
  42. package/esm/schemas/multiscales.js +1 -0
  43. package/esm/schemas/multiscales.js.map +1 -0
  44. package/esm/schemas/ngff_image.js +1 -0
  45. package/esm/schemas/ngff_image.js.map +1 -0
  46. package/esm/schemas/ome_zarr.js +1 -0
  47. package/esm/schemas/ome_zarr.js.map +1 -0
  48. package/esm/schemas/rfc4.js +1 -0
  49. package/esm/schemas/rfc4.js.map +1 -0
  50. package/esm/schemas/units.js +1 -0
  51. package/esm/schemas/units.js.map +1 -0
  52. package/esm/schemas/zarr_metadata.js +1 -0
  53. package/esm/schemas/zarr_metadata.js.map +1 -0
  54. package/esm/types/array_interface.js +1 -0
  55. package/esm/types/array_interface.js.map +1 -0
  56. package/esm/types/hcs.js +1 -0
  57. package/esm/types/hcs.js.map +1 -0
  58. package/esm/types/methods.js +1 -0
  59. package/esm/types/methods.js.map +1 -0
  60. package/esm/types/multiscales.js +1 -0
  61. package/esm/types/multiscales.js.map +1 -0
  62. package/esm/types/ngff_image.js +1 -0
  63. package/esm/types/ngff_image.js.map +1 -0
  64. package/esm/types/rfc4.js +1 -0
  65. package/esm/types/rfc4.js.map +1 -0
  66. package/esm/types/units.js +1 -0
  67. package/esm/types/units.js.map +1 -0
  68. package/esm/types/zarr_metadata.js +1 -0
  69. package/esm/types/zarr_metadata.js.map +1 -0
  70. package/esm/utils/create_queue.js +1 -0
  71. package/esm/utils/create_queue.js.map +1 -0
  72. package/esm/utils/factory.js +1 -0
  73. package/esm/utils/factory.js.map +1 -0
  74. package/esm/utils/method_metadata.js +1 -0
  75. package/esm/utils/method_metadata.js.map +1 -0
  76. package/esm/utils/validation.js +1 -0
  77. package/esm/utils/validation.js.map +1 -0
  78. package/package.json +23 -34
  79. package/esm/_dnt.shims.d.ts +0 -2
  80. package/esm/_dnt.shims.d.ts.map +0 -1
  81. package/esm/_dnt.shims.js +0 -57
  82. package/esm/package.json +0 -3
  83. package/script/_dnt.shims.d.ts +0 -2
  84. package/script/_dnt.shims.d.ts.map +0 -1
  85. package/script/_dnt.shims.js +0 -60
  86. package/script/browser-mod.d.ts +0 -16
  87. package/script/browser-mod.d.ts.map +0 -1
  88. package/script/browser-mod.js +0 -51
  89. package/script/io/from_ngff_zarr.d.ts +0 -10
  90. package/script/io/from_ngff_zarr.d.ts.map +0 -1
  91. package/script/io/from_ngff_zarr.js +0 -234
  92. package/script/io/hcs.d.ts +0 -18
  93. package/script/io/hcs.d.ts.map +0 -1
  94. package/script/io/hcs.js +0 -55
  95. package/script/io/itk_image_to_ngff_image.d.ts +0 -30
  96. package/script/io/itk_image_to_ngff_image.d.ts.map +0 -1
  97. package/script/io/itk_image_to_ngff_image.js +0 -153
  98. package/script/io/ngff_image_to_itk_image.d.ts +0 -30
  99. package/script/io/ngff_image_to_itk_image.d.ts.map +0 -1
  100. package/script/io/ngff_image_to_itk_image.js +0 -244
  101. package/script/io/to_ngff_image.d.ts +0 -17
  102. package/script/io/to_ngff_image.d.ts.map +0 -1
  103. package/script/io/to_ngff_image.js +0 -162
  104. package/script/io/to_ngff_zarr.d.ts +0 -10
  105. package/script/io/to_ngff_zarr.d.ts.map +0 -1
  106. package/script/io/to_ngff_zarr.js +0 -346
  107. package/script/methods/itkwasm-browser.d.ts +0 -6
  108. package/script/methods/itkwasm-browser.d.ts.map +0 -1
  109. package/script/methods/itkwasm-browser.js +0 -488
  110. package/script/methods/itkwasm-node.d.ts +0 -6
  111. package/script/methods/itkwasm-node.d.ts.map +0 -1
  112. package/script/methods/itkwasm-node.js +0 -493
  113. package/script/methods/itkwasm-shared.d.ts +0 -68
  114. package/script/methods/itkwasm-shared.d.ts.map +0 -1
  115. package/script/methods/itkwasm-shared.js +0 -524
  116. package/script/mod.d.ts +0 -24
  117. package/script/mod.d.ts.map +0 -1
  118. package/script/mod.js +0 -50
  119. package/script/package.json +0 -3
  120. package/script/process/to_multiscales-browser.d.ts +0 -17
  121. package/script/process/to_multiscales-browser.d.ts.map +0 -1
  122. package/script/process/to_multiscales-browser.js +0 -17
  123. package/script/process/to_multiscales-node.d.ts +0 -18
  124. package/script/process/to_multiscales-node.d.ts.map +0 -1
  125. package/script/process/to_multiscales-node.js +0 -21
  126. package/script/process/to_multiscales-shared.d.ts +0 -28
  127. package/script/process/to_multiscales-shared.d.ts.map +0 -1
  128. package/script/process/to_multiscales-shared.js +0 -66
  129. package/script/schemas/coordinate_systems.d.ts +0 -251
  130. package/script/schemas/coordinate_systems.d.ts.map +0 -1
  131. package/script/schemas/coordinate_systems.js +0 -142
  132. package/script/schemas/index.d.ts +0 -9
  133. package/script/schemas/index.d.ts.map +0 -1
  134. package/script/schemas/index.js +0 -101
  135. package/script/schemas/methods.d.ts +0 -3
  136. package/script/schemas/methods.d.ts.map +0 -1
  137. package/script/schemas/methods.js +0 -11
  138. package/script/schemas/multiscales.d.ts +0 -4
  139. package/script/schemas/multiscales.d.ts.map +0 -1
  140. package/script/schemas/multiscales.js +0 -24
  141. package/script/schemas/ngff_image.d.ts +0 -20
  142. package/script/schemas/ngff_image.d.ts.map +0 -1
  143. package/script/schemas/ngff_image.js +0 -24
  144. package/script/schemas/ome_zarr.d.ts +0 -617
  145. package/script/schemas/ome_zarr.d.ts.map +0 -1
  146. package/script/schemas/ome_zarr.js +0 -211
  147. package/script/schemas/rfc4.d.ts +0 -334
  148. package/script/schemas/rfc4.d.ts.map +0 -1
  149. package/script/schemas/rfc4.js +0 -132
  150. package/script/schemas/units.d.ts +0 -78
  151. package/script/schemas/units.d.ts.map +0 -1
  152. package/script/schemas/units.js +0 -70
  153. package/script/schemas/zarr_metadata.d.ts +0 -55
  154. package/script/schemas/zarr_metadata.d.ts.map +0 -1
  155. package/script/schemas/zarr_metadata.js +0 -71
  156. package/script/types/array_interface.d.ts +0 -7
  157. package/script/types/array_interface.d.ts.map +0 -1
  158. package/script/types/array_interface.js +0 -2
  159. package/script/types/hcs.d.ts +0 -70
  160. package/script/types/hcs.d.ts.map +0 -1
  161. package/script/types/hcs.js +0 -233
  162. package/script/types/methods.d.ts +0 -7
  163. package/script/types/methods.d.ts.map +0 -1
  164. package/script/types/methods.js +0 -12
  165. package/script/types/multiscales.d.ts +0 -21
  166. package/script/types/multiscales.d.ts.map +0 -1
  167. package/script/types/multiscales.js +0 -38
  168. package/script/types/ngff_image.d.ts +0 -27
  169. package/script/types/ngff_image.d.ts.map +0 -1
  170. package/script/types/ngff_image.js +0 -48
  171. package/script/types/rfc4.d.ts +0 -94
  172. package/script/types/rfc4.d.ts.map +0 -1
  173. package/script/types/rfc4.js +0 -143
  174. package/script/types/units.d.ts +0 -12
  175. package/script/types/units.d.ts.map +0 -1
  176. package/script/types/units.js +0 -66
  177. package/script/types/zarr_metadata.d.ts +0 -58
  178. package/script/types/zarr_metadata.d.ts.map +0 -1
  179. package/script/types/zarr_metadata.js +0 -20
  180. package/script/utils/create_queue.d.ts +0 -6
  181. package/script/utils/create_queue.d.ts.map +0 -1
  182. package/script/utils/create_queue.js +0 -17
  183. package/script/utils/factory.d.ts +0 -13
  184. package/script/utils/factory.d.ts.map +0 -1
  185. package/script/utils/factory.js +0 -108
  186. package/script/utils/method_metadata.d.ts +0 -10
  187. package/script/utils/method_metadata.d.ts.map +0 -1
  188. package/script/utils/method_metadata.js +0 -40
  189. package/script/utils/validation.d.ts +0 -6
  190. package/script/utils/validation.d.ts.map +0 -1
  191. package/script/utils/validation.js +0 -78
  192. /package/{LICENSE → LICENSE.txt} +0 -0
package/README.md CHANGED
@@ -1,81 +1,273 @@
1
1
  <!-- SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC -->
2
2
  <!-- SPDX-License-Identifier: MIT -->
3
- # ngff-zarr
4
-
5
- [![PyPI - Version](https://img.shields.io/pypi/v/ngff-zarr.svg)](https://pypi.org/project/ngff-zarr)
6
- [![PyPI - Python Version](https://img.shields.io/pypi/pyversions/ngff-zarr.svg)](https://pypi.org/project/ngff-zarr)
7
- [![Python CI Testing](https://github.com/thewtex/ngff-zarr/actions/workflows/python.yml/badge.svg)](https://github.com/thewtex/ngff-zarr/actions/workflows/python.yml)
8
- [![Typescript CI Testing](https://github.com/thewtex/ngff-zarr/actions/workflows/typescript.yml/badge.svg)](https://github.com/thewtex/ngff-zarr/actions/workflows/typescript.yml)
9
- [![MCP CI Testing](https://github.com/thewtex/ngff-zarr/actions/workflows/mcp-ci.yml/badge.svg)](https://github.com/thewtex/ngff-zarr/actions/workflows/mcp-ci.yml)
10
- [![DOI](https://zenodo.org/badge/541840158.svg)](https://zenodo.org/badge/latestdoi/541840158)
11
- [![Documentation Status](https://readthedocs.org/projects/ngff-zarr/badge/?version=latest)](https://ngff-zarr.readthedocs.io/en/latest/?badge=latest)
12
-
13
- ---
14
-
15
- A multi-language implementation of the
16
- [Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr](https://ngff.openmicroscopy.org)
17
- specification.
18
-
19
- ## Repository Structure
20
-
21
- This repository contains multiple packages implementing NGFF-Zarr support:
22
-
23
- - **[`py/`](./py/)** - Python package (ngff-zarr) - A lean and kind NGFF-Zarr
24
- implementation
25
- - **[`mcp/`](./mcp/)** - Model Context Protocol (MCP) server (ngff-zarr-mcp) for
26
- AI integration
27
- - **TypeScript package** - Coming soon
28
-
29
- ## Python Package (`py/`)
30
-
31
- The main Python package provides:
32
-
33
- ✨ **Features**
34
-
35
- - Minimal dependencies
36
- - Work with arbitrary Zarr store types
37
- - Lazy, parallel, and web ready -- no local filesystem required
38
- - Process extremely large datasets
39
- - Conversion of most bioimaging file formats
40
- - Multiple downscaling methods
41
- - Supports Python>=3.9
42
- - Reads OME-Zarr v0.1 to v0.5 into simple Python data classes with Dask arrays
43
- - Optional OME-Zarr data model validation during reading
44
- - Writes OME-Zarr v0.4 to v0.5
45
- - [Sharded Zarr] stores
46
- - Optional writing via zarr-python 2, zarr-python 3, [tensorstore] or zarrita (TypeScript)
47
- - [Anatomical orientation metadata](./docs/rfc4.md) (RFC-4)
48
- - **OME-Zarr Zip (.ozx) file support** for single-file OME-Zarr datasets (RFC-9)
49
- - **High Content Screening (HCS) support** for plate and well data
50
- - **Model Context Protocol (MCP) server** for AI agent integration
51
-
52
- 📖 **Documentation**
53
-
54
- More information about command line usage, the Python API, library features, and
55
- how to contribute can be found in
56
- [our documentation](https://ngff-zarr.readthedocs.io/).
57
-
58
- ## MCP Server (`mcp/`)
59
-
60
- The Model Context Protocol server enables AI assistants like Claude to interact
61
- with NGFF-Zarr files. See the [MCP documentation](./mcp/README.md) for setup and
62
- usage instructions.
63
-
64
- ## See also
65
-
66
- - [ome-zarr-py](https://github.com/ome/ome-zarr-py)
67
- - [multiscale-spatial-image](https://github.com/spatial-image/multiscale-spatial-image)
68
- - [itk-ioomezarrngff](https://github.com/InsightSoftwareConsortium/ITKIOOMEZarrNGFF)
69
- - [iohub](https://czbiohub-sf.github.io/iohub/)
70
- - [pydantic-ome-ngff](https://janeliascicomp.github.io/pydantic-ome-ngff/)
71
- - [aicsimageio](https://allencellmodeling.github.io/aicsimageio/)
72
- - [bfio](https://bfio.readthedocs.io/)
73
- - [zod-ome-ngff](https://github.com/hms-dbmi/zod-ome-ngff)
74
3
 
75
- ## License
4
+ # ngff-zarr TypeScript
5
+
6
+ A TypeScript implementation of ngff-zarr for reading and writing OME-Zarr files,
7
+ compatible with Deno, Node.js, and the browser.
8
+
9
+ ## Features
10
+
11
+ - 🦕 **Deno-first**: Built for Deno with first-class TypeScript support
12
+ - 📦 **npm compatible**: Automatically builds npm packages using @deno/dnt
13
+ - 🔍 **Type-safe**: Full TypeScript support with Zod schema validation
14
+ - 🗂️ **OME-Zarr support**: Read and write OME-Zarr files using zarrita
15
+ - 🧪 **Well-tested**: Comprehensive test suite using @std/assert
16
+ - 🏗️ **Mirrors Python API**: TypeScript classes and types mirror the Python
17
+ dataclasses
18
+
19
+ ## Installation
20
+
21
+ ### Deno
22
+
23
+ ```typescript
24
+ import * as ngffZarr from "@fideus-labs/ngff-zarr";
25
+ ```
26
+
27
+ ### Node.js/npm
28
+
29
+ ```bash
30
+ npm install @fideus-labs/ngff-zarr
31
+ ```
32
+
33
+ ```typescript
34
+ import * as ngffZarr from "@fideus-labs/ngff-zarr";
35
+ ```
36
+
37
+ ## Quick Start
38
+
39
+ ### Reading OME-Zarr files
40
+
41
+ ```typescript
42
+ import { OMEZarrReader } from "@fideus-labs/ngff-zarr";
43
+
44
+ const reader = new OMEZarrReader({ validate: true });
45
+ const multiscales = await reader.fromNgffZarr("path/to/image.ome.zarr");
46
+
47
+ console.log(`Loaded ${multiscales.images.length} scale levels`);
48
+ console.log(`Image shape: ${multiscales.images[0].data.shape}`);
49
+ ```
50
+
51
+ ### Writing OME-Zarr files
52
+
53
+ ```typescript
54
+ import {
55
+ createMetadata,
56
+ createMultiscales,
57
+ createNgffImage,
58
+ OMEZarrWriter,
59
+ } from "@fideus-labs/ngff-zarr";
60
+
61
+ // Create a simple 2D image
62
+ const image = createNgffImage(
63
+ new ArrayBuffer(256 * 256),
64
+ [256, 256],
65
+ "uint8",
66
+ ["y", "x"],
67
+ { y: 1.0, x: 1.0 },
68
+ { y: 0.0, x: 0.0 },
69
+ );
70
+
71
+ // Create metadata
72
+ const axes = [
73
+ { name: "y", type: "space" },
74
+ { name: "x", type: "space" },
75
+ ];
76
+ const datasets = [{
77
+ path: "0",
78
+ coordinateTransformations: [
79
+ { type: "scale", scale: [1.0, 1.0] },
80
+ { type: "translation", translation: [0.0, 0.0] },
81
+ ],
82
+ }];
83
+ const metadata = createMetadata(axes, datasets);
84
+
85
+ // Create multiscales
86
+ const multiscales = createMultiscales([image], metadata);
87
+
88
+ // Write to OME-Zarr
89
+ const writer = new OMEZarrWriter();
90
+ await writer.toNgffZarr("output.ome.zarr", multiscales);
91
+ ```
92
+
93
+ ### Schema Validation
94
+
95
+ ```typescript
96
+ import { MetadataSchema, validateMetadata } from "@fideus-labs/ngff-zarr";
97
+
98
+ const metadata = {
99
+ axes: [
100
+ { name: "y", type: "space" },
101
+ { name: "x", type: "space" },
102
+ ],
103
+ datasets: [{
104
+ path: "0",
105
+ coordinateTransformations: [
106
+ { type: "scale", scale: [1.0, 1.0] },
107
+ { type: "translation", translation: [0.0, 0.0] },
108
+ ],
109
+ }],
110
+ name: "test_image",
111
+ version: "0.4",
112
+ };
113
+
114
+ // Validate using Zod schema
115
+ const validatedMetadata = MetadataSchema.parse(metadata);
116
+
117
+ // Or use utility function
118
+ const validatedMetadata2 = validateMetadata(metadata);
119
+ ```
120
+
121
+ ## API Reference
122
+
123
+ ### Core Types
124
+
125
+ - `NgffImage`: Represents an image with associated metadata
126
+ - `Multiscales`: Container for multiple scale levels of an image
127
+ - `DaskArray`: Metadata representation of dask arrays
128
+ - `Metadata`: OME-Zarr metadata structure
129
+
130
+ ### I/O Classes
131
+
132
+ - `OMEZarrReader`: Read OME-Zarr files using zarrita
133
+ - `OMEZarrWriter`: Write OME-Zarr files using zarrita
134
+
135
+ ### Validation
136
+
137
+ - Zod schemas for all data structures
138
+ - Utility functions for validation
139
+ - Type-safe parsing and validation
140
+
141
+ ### Factory Functions
76
142
 
77
- `ngff-zarr` is distributed under the terms of the
78
- [MIT](https://spdx.org/licenses/MIT.html) license.
143
+ - `createNgffImage()`: Create NgffImage instances
144
+ - `createMetadata()`: Create metadata structures
145
+ - `createMultiscales()`: Create multiscale containers
146
+
147
+ ## Development
148
+
149
+ ### Prerequisites
150
+
151
+ - [Deno](https://deno.land/) >= 1.40.0
152
+ - [Pixi](https://pixi.sh/) (optional, for environment management)
153
+
154
+ ### Setup
155
+
156
+ ```bash
157
+ cd ts/
158
+ pixi install # or ensure Deno is installed
159
+ ```
160
+
161
+ ### Commands
162
+
163
+ ```bash
164
+ # Run tests
165
+ pixi run test
166
+ # or
167
+ deno test --allow-all
168
+
169
+ # Format code
170
+ pixi run fmt
171
+ # or
172
+ deno fmt
173
+
174
+ # Lint code
175
+ pixi run lint
176
+ # or
177
+ deno lint
178
+
179
+ # Type check
180
+ pixi run check
181
+ # or
182
+ deno check src/mod.ts
183
+
184
+ # Build npm package
185
+ pixi run build-npm
186
+ # or
187
+ deno task build:npm
188
+
189
+ # Browser testing with Playwright
190
+ pixi run test-browser
191
+ # or
192
+ deno task test:browser
193
+
194
+ # Browser testing with UI
195
+ deno task test:browser:ui
196
+
197
+ # Run all tests (including browser tests)
198
+ deno task test:all
199
+ ```
200
+
201
+ ### Browser Testing
202
+
203
+ This project includes comprehensive browser testing using Playwright. The
204
+ browser tests verify that the npm-transpiled package works correctly in real
205
+ browser environments.
206
+
207
+ **Features:**
208
+
209
+ - Multi-browser testing (Chrome, Firefox, Safari, Mobile)
210
+ - NPM package validation in browser context
211
+ - Import resolution testing for dependencies
212
+ - Schema validation in browser environment
213
+
214
+ **Quick Start:**
215
+
216
+ ```bash
217
+ # Build npm package and run browser tests
218
+ deno task test:browser:npm
219
+
220
+ # Run browser tests with interactive UI
221
+ deno task test:browser:ui
222
+
223
+ # Debug browser tests
224
+ deno task test:browser:debug
225
+ ```
226
+
227
+ **Test Files:**
228
+
229
+ - `/test/browser-npm/` - Browser test files and configuration
230
+ - `/test/browser/server.ts` - Test server for serving assets
231
+ - `/scripts/run_playwright.mjs` - Node.js wrapper for Playwright execution
232
+
233
+ See [test/browser/README.md](test/browser/README.md) for detailed browser
234
+ testing documentation.
235
+
236
+ ### Project Structure
237
+
238
+ ```
239
+ ts/
240
+ ├── src/
241
+ │ ├── types/ # TypeScript type definitions
242
+ │ ├── schemas/ # Zod validation schemas
243
+ │ ├── io/ # Zarr I/O operations
244
+ │ ├── utils/ # Utility functions
245
+ │ └── mod.ts # Main module exports
246
+ ├── test/ # Test files
247
+ ├── scripts/ # Build scripts
248
+ ├── deno.json # Deno configuration
249
+ ├── pixi.toml # Pixi environment
250
+ └── README.md
251
+ ```
252
+
253
+ ## Relationship to Python Package
254
+
255
+ This TypeScript package mirrors the Python ngff-zarr package:
256
+
257
+ - **Types**: TypeScript interfaces/classes correspond to Python dataclasses
258
+ - **API**: Similar function names and patterns
259
+ - **Validation**: Zod schemas provide runtime validation like Python
260
+ - **I/O**: zarrita provides Zarr operations like zarr-python
261
+
262
+ ## Contributing
263
+
264
+ 1. Fork the repository
265
+ 2. Create a feature branch
266
+ 3. Make your changes
267
+ 4. Add tests
268
+ 5. Run the test suite: `deno test --allow-all`
269
+ 6. Submit a pull request
270
+
271
+ ## License
79
272
 
80
- [Sharded Zarr]: https://zarr.dev/zeps/accepted/ZEP0002.html
81
- [tensorstore]: https://google.github.io/tensorstore/
273
+ MIT License - see LICENSE file for details.
@@ -23,3 +23,4 @@ export { createAxis, createDataset, createMetadata, createMultiscales, createNgf
23
23
  export { getMethodMetadata } from "./utils/method_metadata.js";
24
24
  // Browser-compatible processing modules
25
25
  export * from "./process/to_multiscales-browser.js";
26
+ //# sourceMappingURL=browser-mod.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"browser-mod.js","sourceRoot":"","sources":["../src/browser-mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,oCAAoC;AACpC,wEAAwE;AACxE,wEAAwE;AACxE,kDAAkD;AAClD,EAAE;AACF,sEAAsE;AACtE,8CAA8C;AAC9C,cAAc,kBAAkB,CAAC;AACjC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,0BAA0B,CAAC;AACzC,cAAc,uBAAuB,CAAC;AACtC,cAAc,wBAAwB,CAAC;AAEvC,cAAc,oBAAoB,CAAC;AACnC,cAAc,sBAAsB,CAAC;AACrC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,yBAAyB,CAAC;AACxC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAE/D,wCAAwC;AACxC,cAAc,qCAAqC,CAAC"}
@@ -1 +1 @@
1
- {"version":3,"file":"from_ngff_zarr.d.ts","sourceRoot":"","sources":["../../src/io/from_ngff_zarr.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAChC,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AAMtD,MAAM,WAAW,mBAAmB;IAClC,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,OAAO,CAAC,EAAE,KAAK,GAAG,KAAK,CAAC;CACzB;AAED,MAAM,MAAM,WAAW,GAAG,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;AAElD,wBAAsB,YAAY,CAEhC,KAAK,EAAE,MAAM,GAAG,WAAW,GAAG,IAAI,CAAC,UAAU,EAC7C,OAAO,GAAE,mBAAwB,GAChC,OAAO,CAAC,WAAW,CAAC,CA6MtB;AAED,wBAAsB,aAAa,CACjC,SAAS,EAAE,MAAM,EACjB,SAAS,EAAE,MAAM,EACjB,SAAS,CAAC,EAAE,CAAC,MAAM,GAAG,IAAI,CAAC,EAAE,GAC5B,OAAO,CAAC,OAAO,CAAC,CAmClB"}
1
+ {"version":3,"file":"from_ngff_zarr.d.ts","sourceRoot":"","sources":["../../src/io/from_ngff_zarr.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAChC,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AAMtD,MAAM,WAAW,mBAAmB;IAClC,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,OAAO,CAAC,EAAE,KAAK,GAAG,KAAK,CAAC;CACzB;AAED,MAAM,MAAM,WAAW,GAAG,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;AAElD,wBAAsB,YAAY,CAEhC,KAAK,EAAE,MAAM,GAAG,WAAW,GAAG,IAAI,CAAC,UAAU,EAC7C,OAAO,GAAE,mBAAwB,GAChC,OAAO,CAAC,WAAW,CAAC,CA+NtB;AAED,wBAAsB,aAAa,CACjC,SAAS,EAAE,MAAM,EACjB,SAAS,EAAE,MAAM,EACjB,SAAS,CAAC,EAAE,CAAC,MAAM,GAAG,IAAI,CAAC,EAAE,GAC5B,OAAO,CAAC,OAAO,CAAC,CAmClB"}
@@ -1,6 +1,5 @@
1
1
  // SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
2
2
  // SPDX-License-Identifier: MIT
3
- import * as dntShim from "../_dnt.shims.js";
4
3
  import * as zarr from "zarrita";
5
4
  import { Multiscales } from "../types/multiscales.js";
6
5
  import { NgffImage } from "../types/ngff_image.js";
@@ -22,7 +21,7 @@ store, options = {}) {
22
21
  }
23
22
  else {
24
23
  // For local paths, check if we're in a browser environment
25
- if (typeof dntShim.dntGlobalThis !== "undefined") {
24
+ if (typeof window !== "undefined") {
26
25
  throw new Error("Local file paths are not supported in browser environments. Use HTTP/HTTPS URLs instead.");
27
26
  }
28
27
  // Use dynamic import for FileSystemStore, ZipFileStore in Node.js/Deno environments
@@ -57,11 +56,26 @@ store, options = {}) {
57
56
  kind: "group",
58
57
  });
59
58
  const attrs = root.attrs;
60
- if (!attrs || !attrs.multiscales) {
59
+ // Handle both 0.4 (multiscales at root) and 0.5 (multiscales under ome) formats
60
+ let multiscalesArray;
61
+ let detectedVersion;
62
+ if (attrs && typeof attrs === "object" && "ome" in attrs) {
63
+ // OME-Zarr 0.5 format: metadata is under the 'ome' property
64
+ const omeAttrs = attrs.ome;
65
+ if (!omeAttrs || !omeAttrs.multiscales) {
66
+ throw new Error("No multiscales metadata found in OME-Zarr 0.5 store");
67
+ }
68
+ multiscalesArray = omeAttrs.multiscales;
69
+ detectedVersion = omeAttrs.version;
70
+ }
71
+ else if (attrs && typeof attrs === "object" && "multiscales" in attrs) {
72
+ // OME-Zarr 0.4 format: metadata is at root
73
+ multiscalesArray = attrs
74
+ .multiscales;
75
+ }
76
+ else {
61
77
  throw new Error("No multiscales metadata found in Zarr store");
62
78
  }
63
- const multiscalesArray = attrs
64
- .multiscales;
65
79
  if (!Array.isArray(multiscalesArray) || multiscalesArray.length === 0) {
66
80
  throw new Error("No multiscales metadata found in Zarr store");
67
81
  }
@@ -74,8 +88,9 @@ store, options = {}) {
74
88
  // Check version compatibility if specified
75
89
  if (version) {
76
90
  const metadataWithVersion = multiscalesMetadata;
77
- if (metadataWithVersion.version !== version) {
78
- throw new Error(`Expected OME-Zarr version ${version}, but found ${metadataWithVersion.version || "unknown"}`);
91
+ const actualVersion = metadataWithVersion.version || detectedVersion;
92
+ if (actualVersion !== version) {
93
+ throw new Error(`Expected OME-Zarr version ${version}, but found ${actualVersion || "unknown"}`);
79
94
  }
80
95
  }
81
96
  }
@@ -205,3 +220,4 @@ export async function readArrayData(storePath, arrayPath, selection) {
205
220
  throw new Error(`Failed to read array data: ${error instanceof Error ? error.message : String(error)}`);
206
221
  }
207
222
  }
223
+ //# sourceMappingURL=from_ngff_zarr.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"from_ngff_zarr.js","sourceRoot":"","sources":["../../src/io/from_ngff_zarr.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAChC,OAAO,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AACtD,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAEnD,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAU7D,MAAM,CAAC,KAAK,UAAU,YAAY;AAChC,qEAAqE;AACrE,KAA6C,EAC7C,UAA+B,EAAE;IAEjC,MAAM,QAAQ,GAAG,OAAO,CAAC,QAAQ,IAAI,KAAK,CAAC;IAC3C,MAAM,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC;IAEhC,IAAI,CAAC;QACH,yDAAyD;QACzD,IAAI,aAA4C,CAAC;QACjD,IAAI,KAAK,YAAY,GAAG,IAAI,KAAK,YAAY,IAAI,CAAC,UAAU,EAAE,CAAC;YAC7D,aAAa,GAAG,KAAK,CAAC;QACxB,CAAC;aAAM,IAAI,KAAK,CAAC,UAAU,CAAC,SAAS,CAAC,IAAI,KAAK,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;YACvE,qCAAqC;YACrC,aAAa,GAAG,IAAI,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC;QAC7C,CAAC;aAAM,CAAC;YACN,2DAA2D;YAC3D,IAAI,OAAO,MAAM,KAAK,WAAW,EAAE,CAAC;gBAClC,MAAM,IAAI,KAAK,CACb,0FAA0F,CAC3F,CAAC;YACJ,CAAC;YAED,oFAAoF;YACpF,IAAI,CAAC;gBACH,MAAM,EAAE,eAAe,EAAE,YAAY,EAAE,GAAG,MAAM,MAAM,CACpD,kBAAkB,CACnB,CAAC;gBACF,mCAAmC;gBACnC,IAAI,KAAK,YAAY,eAAe,IAAI,KAAK,YAAY,YAAY,EAAE,CAAC;oBACtE,mCAAmC;oBACnC,aAAa,GAAG,KAAK,CAAC;gBACxB,CAAC;qBAAM,CAAC;oBACN,sDAAsD;oBACtD,MAAM,cAAc,GAAG,KAAK,CAAC,OAAO,CAAC,gBAAgB,EAAE,IAAI,CAAC,CAAC;oBAC7D,mCAAmC;oBACnC,aAAa,GAAG,IAAI,eAAe,CAAC,cAAc,CAAC,CAAC;gBACtD,CAAC;YACH,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,MAAM,IAAI,KAAK,CACb,mCAAmC,KAAK,kDAAkD,CAC3F,CAAC;YACJ,CAAC;QACH,CAAC;QAED,0DAA0D;QAC1D,IAAI,cAAc,CAAC;QACnB,IAAI,CAAC;YACH,yCAAyC;YACzC,cAAc,GAAG,MAAM,IAAI,CAAC,mBAAmB,CAAC,aAAa,CAAC,CAAC;QACjE,CAAC;QAAC,MAAM,CAAC;YACP,cAAc,GAAG,aAAa,CAAC;QACjC,CAAC;QAED,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,cAA+B,EAAE;YAC5D,IAAI,EAAE,OAAO;SACd,CAAC,CAAC;QACH,MAAM,KAAK,GAAG,IAAI,CAAC,KAAgB,CAAC;QAEpC,gFAAgF;QAChF,IAAI,gBAA2B,CAAC;QAChC,IAAI,eAAmC,CAAC;QAExC,IAAI,KAAK,IAAI,OAAO,KAAK,KAAK,QAAQ,IAAI,KAAK,IAAI,KAAK,EAAE,CAAC;YACzD,4DAA4D;YAC5D,MAAM,QAAQ,GAAI,KAAiC,CAAC,GAGnD,CAAC;YACF,IAAI,CAAC,QAAQ,IAAI,CAAC,QAAQ,CAAC,WAAW,EAAE,CAAC;gBACvC,MAAM,IAAI,KAAK,CAAC,qDAAqD,CAAC,CAAC;YACzE,CAAC;YACD,gBAAgB,GAAG,QAAQ,CAAC,WAAwB,CAAC;YACrD,eAAe,GAAG,QAAQ,CAAC,OAA6B,CAAC;QAC3D,CAAC;aAAM,IAAI,KAAK,IAAI,OAAO,KAAK,KAAK,QAAQ,IAAI,aAAa,IAAI,KAAK,EAAE,CAAC;YACxE,2CAA2C;YAC3C,gBAAgB,GAAI,KAAiC;iBAClD,WAAwB,CAAC;QAC9B,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,6CAA6C,CAAC,CAAC;QACjE,CAAC;QAED,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,gBAAgB,CAAC,IAAI,gBAAgB,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACtE,MAAM,IAAI,KAAK,CAAC,6CAA6C,CAAC,CAAC;QACjE,CAAC;QACD,MAAM,mBAAmB,GAAG,gBAAgB,CAAC,CAAC,CAAY,CAAC;QAE3D,IAAI,QAAQ,EAAE,CAAC;YACb,MAAM,MAAM,GAAG,cAAc,CAAC,SAAS,CAAC,mBAAmB,CAAC,CAAC;YAC7D,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;gBACpB,MAAM,IAAI,KAAK,CAAC,8BAA8B,MAAM,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC;YACxE,CAAC;YAED,2CAA2C;YAC3C,IAAI,OAAO,EAAE,CAAC;gBACZ,MAAM,mBAAmB,GAAG,mBAA2C,CAAC;gBACxE,MAAM,aAAa,GAAG,mBAAmB,CAAC,OAAO,IAAI,eAAe,CAAC;gBACrE,IAAI,aAAa,KAAK,OAAO,EAAE,CAAC;oBAC9B,MAAM,IAAI,KAAK,CACb,6BAA6B,OAAO,eAClC,aAAa,IAAI,SACnB,EAAE,CACH,CAAC;gBACJ,CAAC;YACH,CAAC;QACH,CAAC;QAED,MAAM,QAAQ,GAAG,mBAA+B,CAAC;QAEjD,yDAAyD;QACzD,IAAK,KAAiC,CAAC,KAAK,EAAE,CAAC;YAC7C,MAAM,SAAS,GAAI,KAAiC,CAAC,KAGpD,CAAC;YAEF,0DAA0D;YAC1D,IAAI,SAAS,CAAC,QAAQ,IAAI,KAAK,CAAC,OAAO,CAAC,SAAS,CAAC,QAAQ,CAAC,EAAE,CAAC;gBAC5D,KACE,MAAM,OAAO,IAAI,SAAS,CAAC,QAE1B,EACD,CAAC;oBACD,IAAI,OAAO,CAAC,MAAM,IAAI,OAAO,OAAO,CAAC,MAAM,KAAK,QAAQ,EAAE,CAAC;wBACzD,MAAM,MAAM,GAAG,OAAO,CAAC,MAA4C,CAAC;wBAEpE,kEAAkE;wBAClE,IAAI,MAAM,CAAC,GAAG,KAAK,SAAS,IAAI,MAAM,CAAC,GAAG,KAAK,SAAS,EAAE,CAAC;4BACzD,kDAAkD;4BAClD,IAAI,MAAM,CAAC,KAAK,KAAK,SAAS,EAAE,CAAC;gCAC/B,MAAM,CAAC,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC;4BAC5B,CAAC;4BACD,IAAI,MAAM,CAAC,GAAG,KAAK,SAAS,EAAE,CAAC;gCAC7B,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC;4BAC1B,CAAC;wBACH,CAAC;6BAAM,IAAI,MAAM,CAAC,KAAK,KAAK,SAAS,IAAI,MAAM,CAAC,GAAG,KAAK,SAAS,EAAE,CAAC;4BAClE,kDAAkD;4BAClD,IAAI,MAAM,CAAC,GAAG,KAAK,SAAS,EAAE,CAAC;gCAC7B,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC;4BAC5B,CAAC;4BACD,IAAI,MAAM,CAAC,GAAG,KAAK,SAAS,EAAE,CAAC;gCAC7B,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC;4BAC1B,CAAC;wBACH,CAAC;oBACH,CAAC;gBACH,CAAC;YACH,CAAC;YAED,QAAQ,CAAC,KAAK,GAAG,SAA6B,CAAC;QACjD,CAAC;QAED,MAAM,MAAM,GAAgB,EAAE,CAAC;QAE/B,KAAK,MAAM,OAAO,IAAI,QAAQ,CAAC,QAAQ,EAAE,CAAC;YACxC,MAAM,SAAS,GAAG,OAAO,CAAC,IAAI,CAAC;YAE/B,MAAM,SAAS,GAAG,CAAC,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE;gBAC1D,IAAI,EAAE,OAAO;aACd,CAAC,CAA6C,CAAC;YAEhD,uDAAuD;YACvD,IACE,CAAC,SAAS;gBACV,CAAC,CAAC,OAAO,IAAI,SAAS,CAAC;gBACvB,CAAC,CAAC,OAAO,IAAI,SAAS,CAAC;gBACvB,CAAC,CAAC,QAAQ,IAAI,SAAS,CAAC,EACxB,CAAC;gBACD,MAAM,IAAI,KAAK,CACb,8BAA8B,SAAS,0BAA0B,CAClE,CAAC;YACJ,CAAC;YAED,MAAM,KAAK,GAA2B,EAAE,CAAC;YACzC,MAAM,WAAW,GAA2B,EAAE,CAAC;YAE/C,KAAK,MAAM,SAAS,IAAI,OAAO,CAAC,yBAAyB,EAAE,CAAC;gBAC1D,IAAI,SAAS,CAAC,IAAI,KAAK,OAAO,EAAE,CAAC;oBAC/B,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,EAAE;wBAChC,IAAI,CAAC,GAAG,SAAS,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC;4BAC/B,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;wBACxC,CAAC;oBACH,CAAC,CAAC,CAAC;gBACL,CAAC;qBAAM,IAAI,SAAS,CAAC,IAAI,KAAK,aAAa,EAAE,CAAC;oBAC5C,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,EAAE;wBAChC,IAAI,CAAC,GAAG,SAAS,CAAC,WAAW,CAAC,MAAM,EAAE,CAAC;4BACrC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,SAAS,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC;wBACpD,CAAC;oBACH,CAAC,CAAC,CAAC;gBACL,CAAC;YACH,CAAC;YAED,MAAM,IAAI,GAAG,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YACpD,MAAM,SAAS,GAAG,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE;gBACnD,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;oBACd,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC;gBAC7B,CAAC;gBACD,OAAO,GAAG,CAAC;YACb,CAAC,EAAE,EAA2B,CAAC,CAAC;YAEhC,MAAM,SAAS,GAAG,IAAI,SAAS,CAAC;gBAC9B,IAAI,EAAE,SAAS;gBACf,IAAI;gBACJ,KAAK;gBACL,WAAW;gBACX,IAAI,EAAE,QAAQ,CAAC,IAAI;gBACnB,SAAS,EAAE,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS;gBACpE,iBAAiB,EAAE,SAAS;aAC7B,CAAC,CAAC;YAEH,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QACzB,CAAC;QAED,OAAO,IAAI,WAAW,CAAC;YACrB,MAAM;YACN,QAAQ;YACR,YAAY,EAAE,SAAS;YACvB,MAAM,EAAE,SAAS;YACjB,MAAM,EAAE,SAAS;SAClB,CAAC,CAAC;IACL,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,IAAI,KAAK,CACb,4BACE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CACvD,EAAE,CACH,CAAC;IACJ,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,aAAa,CACjC,SAAiB,EACjB,SAAiB,EACjB,SAA6B;IAE7B,IAAI,CAAC;QACH,MAAM,KAAK,GAAG,IAAI,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC;QAC7C,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAE9B,sDAAsD;QACtD,IAAI,SAAS,CAAC;QACd,IAAI,CAAC;YACH,SAAS,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE;gBACtD,IAAI,EAAE,OAAO;aACd,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,OAAO,EAAE,CAAC;YACjB,IAAI,CAAC;gBACH,SAAS,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE;oBACtD,IAAI,EAAE,OAAO;iBACd,CAAC,CAAC;YACL,CAAC;YAAC,OAAO,OAAO,EAAE,CAAC;gBACjB,MAAM,IAAI,KAAK,CACb,6BAA6B,SAAS,yCAAyC,OAAO,eAAe,OAAO,EAAE,CAC/G,CAAC;YACJ,CAAC;QACH,CAAC;QAED,IAAI,SAAS,EAAE,CAAC;YACd,OAAO,MAAM,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,SAAS,CAAC,CAAC;QAC9C,CAAC;aAAM,CAAC;YACN,OAAO,MAAM,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;QACnC,CAAC;IACH,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,IAAI,KAAK,CACb,8BACE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CACvD,EAAE,CACH,CAAC;IACJ,CAAC;AACH,CAAC"}
package/esm/io/hcs.js CHANGED
@@ -49,3 +49,4 @@ export function toHcsZarr(plate, store, _options = {}) {
49
49
  console.log(`Acquisitions: ${plate.acquisitions.length}`);
50
50
  }
51
51
  }
52
+ //# sourceMappingURL=hcs.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"hcs.js","sourceRoot":"","sources":["../../src/io/hcs.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,QAAQ,IAAI,aAAa,EAAE,MAAM,iBAAiB,CAAC;AAa5D;;GAEG;AACH,MAAM,UAAU,WAAW,CACzB,KAAsB,EACtB,UAA8B,EAAE;IAEhC,MAAM,EAAE,QAAQ,GAAG,KAAK,EAAE,aAAa,EAAE,cAAc,EAAE,GAAG,OAAO,CAAC;IAEpE,IAAI,QAAQ,EAAE,CAAC;QACb,OAAO,CAAC,IAAI,CAAC,oCAAoC,CAAC,CAAC;IACrD,CAAC;IAED,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE,CAAC;QAC9B,MAAM,IAAI,KAAK,CAAC,0CAA0C,CAAC,CAAC;IAC9D,CAAC;IAED,wCAAwC;IACxC,iFAAiF;IACjF,MAAM,aAAa,GAAkB;QACnC,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC;QACvC,IAAI,EAAE,CAAC,EAAE,IAAI,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC;QACpC,KAAK,EAAE;YACL,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,EAAE,WAAW,EAAE,CAAC,EAAE;YAC5C,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,EAAE,WAAW,EAAE,CAAC,EAAE;YAC5C,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,EAAE,WAAW,EAAE,CAAC,EAAE;YAC5C,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,EAAE,WAAW,EAAE,CAAC,EAAE;SAC7C;QACD,OAAO,EAAE,KAAK;QACd,YAAY,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,IAAI,EAAE,kBAAkB,EAAE,CAAC;QACnD,WAAW,EAAE,CAAC;QACd,IAAI,EAAE,YAAY;KACnB,CAAC;IAEF,OAAO,IAAI,aAAa,CAAC;QACvB,KAAK;QACL,QAAQ,EAAE,aAAa;QACvB,aAAa;QACb,cAAc;KACf,CAAC,CAAC;AACL,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,SAAS,CACvB,KAAe,EACf,KAAsB,EACtB,WAA6B,EAAE;IAE/B,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE,CAAC;QAC9B,MAAM,IAAI,KAAK,CAAC,0CAA0C,CAAC,CAAC;IAC9D,CAAC;IAED,8BAA8B;IAC9B,OAAO,CAAC,GAAG,CAAC,2CAA2C,KAAK,EAAE,CAAC,CAAC;IAChE,OAAO,CAAC,GAAG,CAAC,UAAU,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;IACpC,OAAO,CAAC,GAAG,CAAC,UAAU,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;IAC5C,OAAO,CAAC,GAAG,CAAC,SAAS,KAAK,CAAC,IAAI,CAAC,MAAM,cAAc,KAAK,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;IAC5E,IAAI,KAAK,CAAC,YAAY,EAAE,CAAC;QACvB,OAAO,CAAC,GAAG,CAAC,iBAAiB,KAAK,CAAC,YAAY,CAAC,MAAM,EAAE,CAAC,CAAC;IAC5D,CAAC;AACH,CAAC"}
@@ -125,3 +125,4 @@ export async function itkImageToNgffImage(itkImage, options = {}) {
125
125
  computedCallbacks: undefined,
126
126
  });
127
127
  }
128
+ //# sourceMappingURL=itk_image_to_ngff_image.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"itk_image_to_ngff_image.js","sourceRoot":"","sources":["../../src/io/itk_image_to_ngff_image.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B;;GAEG;AAGH,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAChC,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACnD,OAAO,EAAE,6BAA6B,EAAE,MAAM,kBAAkB,CAAC;AAGjE,yDAAyD;AACzD,OAAO,EAAE,6BAA6B,IAAI,UAAU,EAAE,MAAM,SAAS,CAAC;AAgBtE;;;;;;;;;;GAUG;AACH,MAAM,CAAC,KAAK,UAAU,mBAAmB,CACvC,QAAe,EACf,UAAsC,EAAE;IAExC,MAAM,EAAE,wBAAwB,GAAG,IAAI,EAAE,IAAI,GAAG,OAAO,EAAE,GAAG,OAAO,CAAC;IAEpE,+CAA+C;IAC/C,MAAM,KAAK,GAAG,QAAQ,CAAC,IAAI,CAAC;IAC5B,+EAA+E;IAC/E,oFAAoF;IACpF,MAAM,KAAK,GAAG,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,CAAC;IAC3C,MAAM,OAAO,GAAG,QAAQ,CAAC,OAAO,CAAC;IACjC,MAAM,MAAM,GAAG,QAAQ,CAAC,MAAM,CAAC;IAC/B,MAAM,IAAI,GAAG,KAAK,CAAC,MAAM,CAAC;IAE1B,0DAA0D;IAC1D,+CAA+C;IAC/C,IAAI,IAAc,CAAC;IAEnB,oDAAoD;IACpD,MAAM,SAAS,GAAG,QAAQ,CAAC,SAAS,CAAC;IACrC,MAAM,QAAQ,GAAG,SAAS,CAAC,UAAU,GAAG,CAAC,CAAC;IAE1C,IAAI,IAAI,KAAK,CAAC,IAAI,QAAQ,EAAE,CAAC;QAC3B,+CAA+C;QAC/C,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;IACzB,CAAC;SAAM,IAAI,IAAI,GAAG,CAAC,EAAE,CAAC;QACpB,gEAAgE;QAChE,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,CAAC;IACtC,CAAC;SAAM,IAAI,IAAI,GAAG,CAAC,EAAE,CAAC;QACpB,6BAA6B;QAC7B,IAAI,QAAQ,EAAE,CAAC;YACb,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;QAC9B,CAAC;aAAM,CAAC;YACN,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;QAC9B,CAAC;IACH,CAAC;SAAM,IAAI,IAAI,GAAG,CAAC,EAAE,CAAC;QACpB,gBAAgB;QAChB,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;IACnC,CAAC;SAAM,CAAC;QACN,MAAM,IAAI,KAAK,CAAC,qCAAqC,IAAI,EAAE,CAAC,CAAC;IAC/D,CAAC;IAED,8BAA8B;IAC9B,MAAM,cAAc,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;IAChD,MAAM,WAAW,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;IAElE,oCAAoC;IACpC,+DAA+D;IAC/D,oDAAoD;IACpD,8FAA8F;IAC9F,MAAM,KAAK,GAA2B,EAAE,CAAC;IACzC,MAAM,eAAe,GAAG,OAAO,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC;IAClD,WAAW,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE;QAC/B,KAAK,CAAC,GAAG,CAAC,GAAG,eAAe,CAAC,GAAG,CAAC,CAAC;IACpC,CAAC,CAAC,CAAC;IAEH,yCAAyC;IACzC,MAAM,WAAW,GAA2B,EAAE,CAAC;IAC/C,MAAM,cAAc,GAAG,MAAM,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,CAAC;IAChD,WAAW,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE;QAC/B,WAAW,CAAC,GAAG,CAAC,GAAG,cAAc,CAAC,GAAG,CAAC,CAAC;IACzC,CAAC,CAAC,CAAC;IAEH,uCAAuC;IACvC,MAAM,KAAK,GAAG,IAAI,GAAG,EAAsB,CAAC;IAC5C,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAE9B,mCAAmC;IACnC,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;IAEtD,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;QACtD,KAAK,EAAE,KAAK;QACZ,WAAW,EAAE,UAAU;QACvB,SAAS,EAAE,SAAS,CAAC,aAA8B;QACnD,UAAU,EAAE,CAAC;KACd,CAAC,CAAC;IAEH,4CAA4C;IAC5C,qEAAqE;IAErE,wFAAwF;IACxF,MAAM,SAAS,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAE7C,iEAAiE;IACjE,kEAAkE;IAClE,gFAAgF;IAChF,oFAAoF;IACpF,MAAM,SAAS,GAAG;QAChB,IAAI,EAAE,QAAQ,CAAC,IAAuD;QACtE,KAAK,EAAE,KAAK;QACZ,MAAM,EAAE,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC,EAAE,yCAAyC;KAC1E,CAAC;IAEF,gEAAgE;IAChE,mDAAmD;IACnD,MAAM,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,SAAS,EAAE,SAAS,CAAC,CAAC,CAAC,0CAA0C;IAC3F,IAAI,gBAAmE,CAAC;IACxE,IAAI,wBAAwB,EAAE,CAAC;QAC7B,gBAAgB,GAAG,EAAE,CAAC;QACtB,KAAK,MAAM,GAAG,IAAI,WAAW,EAAE,CAAC;YAC9B,MAAM,WAAW,GAAG,6BAA6B,CAAC,GAAG,CAAC,CAAC;YACvD,IAAI,WAAW,KAAK,SAAS,EAAE,CAAC;gBAC9B,gBAAgB,CAAC,GAAG,CAAC,GAAG,WAAW,CAAC;YACtC,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,IAAI,SAAS,CAAC;QACnB,IAAI,EAAE,SAAS;QACf,IAAI;QACJ,KAAK;QACL,WAAW;QACX,IAAI,EAAE,OAAO;QACb,SAAS,EAAE,SAAS;QACpB,gBAAgB;QAChB,iBAAiB,EAAE,SAAS;KAC7B,CAAC,CAAC;AACL,CAAC"}
@@ -216,3 +216,4 @@ export async function ngffImageToItkImage(ngffImage, options = {}) {
216
216
  };
217
217
  return itkImage;
218
218
  }
219
+ //# sourceMappingURL=ngff_image_to_itk_image.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ngff_image_to_itk_image.js","sourceRoot":"","sources":["../../src/io/ngff_image_to_itk_image.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B;;GAEG;AAUH,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAChC,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAgBnD;;GAEG;AACH,SAAS,uBAAuB,CAC9B,QAAuB;IAIvB,QAAQ,QAAQ,EAAE,CAAC;QACjB,KAAK,OAAO;YACV,OAAO,OAAgC,CAAC;QAC1C,KAAK,MAAM;YACT,OAAO,MAA8B,CAAC;QACxC,KAAK,QAAQ;YACX,OAAO,QAAkC,CAAC;QAC5C,KAAK,OAAO;YACV,OAAO,OAAgC,CAAC;QAC1C,KAAK,QAAQ;YACX,OAAO,QAAkC,CAAC;QAC5C,KAAK,OAAO;YACV,OAAO,OAAgC,CAAC;QAC1C,KAAK,QAAQ;YACX,OAAO,QAAkC,CAAC;QAC5C,KAAK,OAAO;YACV,OAAO,OAAgC,CAAC;QAC1C,KAAK,SAAS;YACZ,OAAO,SAAsC,CAAC;QAChD,KAAK,SAAS;YACZ,OAAO,SAAsC,CAAC;QAChD;YACE,MAAM,IAAI,KAAK,CAAC,0BAA0B,QAAQ,EAAE,CAAC,CAAC;IAC1D,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,SAAS,oBAAoB,CAAC,SAAoB;IAChD,MAAM,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC;IAC5B,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;IAEjC,IAAI,MAAM,KAAK,CAAC,CAAC,IAAI,MAAM,KAAK,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAChD,6CAA6C;QAC7C,OAAO,SAAS,CAAC;IACnB,CAAC;IAED,4CAA4C;IAC5C,MAAM,OAAO,GAAG,CAAC,GAAG,IAAI,CAAC,CAAC;IAC1B,MAAM,IAAI,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAC1C,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAEnB,4DAA4D;IAC5D,iEAAiE;IACjE,2DAA2D;IAE3D,OAAO,IAAI,SAAS,CAAC;QACnB,IAAI,EAAE,SAAS,CAAC,IAAI,EAAE,4BAA4B;QAClD,IAAI,EAAE,OAAO;QACb,KAAK,EAAE,SAAS,CAAC,KAAK;QACtB,WAAW,EAAE,SAAS,CAAC,WAAW;QAClC,IAAI,EAAE,SAAS,CAAC,IAAI;QACpB,SAAS,EAAE,SAAS,CAAC,SAAS;QAC9B,gBAAgB,EAAE,SAAS,CAAC,gBAAgB;QAC5C,iBAAiB,EAAE,SAAS,CAAC,iBAAiB;KAC/C,CAAC,CAAC;AACL,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,CAAC,KAAK,UAAU,mBAAmB,CACvC,SAAoB,EACpB,UAAsC,EAAE;IAExC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC;IAEnC,IAAI,YAAY,GAAG,SAAS,CAAC;IAE7B,kCAAkC;IAClC,IAAI,MAAM,KAAK,SAAS,IAAI,YAAY,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;QAC5D,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;QACjD,MAAM,OAAO,GAAG,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,CAAC;QAC/D,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,CACjC,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,CAClE,CAAC;QACF,MAAM,cAAc,GAAG,MAAM,CAAC,WAAW,CACvC,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,WAAW,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,CACxE,CAAC;QAEF,yCAAyC;QACzC,MAAM,SAAS,GAAG,IAAI,KAAK,CAAC,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACvE,SAAS,CAAC,SAAS,CAAC,GAAG,MAAM,CAAC;QAE9B,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC;QAE/D,gDAAgD;QAChD,MAAM,KAAK,GAAG,IAAI,GAAG,EAAsB,CAAC;QAC5C,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAC9B,MAAM,QAAQ,GAAG,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,SAAS,CAAC,CAAC;QAC3E,MAAM,UAAU,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;QAEzD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE;YACxD,KAAK,EAAE,QAAQ;YACf,WAAW,EAAE,UAAU;YACvB,SAAS,EAAE,YAAY,CAAC,IAAI,CAAC,KAAK;YAClC,UAAU,EAAE,CAAC;SACd,CAAC,CAAC;QAEH,uBAAuB;QACvB,MAAM,aAAa,GAAG,IAAI,KAAK,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC5D,MAAM,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,aAAa,EAAE,SAAS,CAAC,CAAC;QAEnD,YAAY,GAAG,IAAI,SAAS,CAAC;YAC3B,IAAI,EAAE,QAAQ;YACd,IAAI,EAAE,OAAO;YACb,KAAK,EAAE,QAAQ;YACf,WAAW,EAAE,cAAc;YAC3B,IAAI,EAAE,YAAY,CAAC,IAAI;YACvB,SAAS,EAAE,YAAY,CAAC,SAAS;gBAC/B,CAAC,CAAC,MAAM,CAAC,WAAW,CAClB,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,MAAM,CAC3C,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CACvB,CACF;gBACD,CAAC,CAAC,SAAS;YACb,gBAAgB,EAAE,YAAY,CAAC,gBAAgB;gBAC7C,CAAC,CAAC,MAAM,CAAC,WAAW,CAClB,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,gBAAgB,CAAC,CAAC,MAAM,CAClD,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CACvB,CACF;gBACD,CAAC,CAAC,SAAS;YACb,iBAAiB,EAAE,YAAY,CAAC,iBAAiB;SAClD,CAAC,CAAC;IACL,CAAC;IAED,qCAAqC;IACrC,IAAI,MAAM,KAAK,SAAS,IAAI,YAAY,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;QAC5D,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;QACjD,MAAM,OAAO,GAAG,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,CAAC;QAC/D,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,CACjC,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,CAClE,CAAC;QACF,MAAM,cAAc,GAAG,MAAM,CAAC,WAAW,CACvC,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,WAAW,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,CACxE,CAAC;QAEF,4CAA4C;QAC5C,MAAM,SAAS,GAAG,IAAI,KAAK,CAAC,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACvE,SAAS,CAAC,SAAS,CAAC,GAAG,MAAM,CAAC;QAE9B,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,YAAY,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC;QAE/D,gDAAgD;QAChD,MAAM,KAAK,GAAG,IAAI,GAAG,EAAsB,CAAC;QAC5C,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAC9B,MAAM,QAAQ,GAAG,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,SAAS,CAAC,CAAC;QAC3E,MAAM,UAAU,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC;QAEzD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE;YACxD,KAAK,EAAE,QAAQ;YACf,WAAW,EAAE,UAAU;YACvB,SAAS,EAAE,YAAY,CAAC,IAAI,CAAC,KAAK;YAClC,UAAU,EAAE,CAAC;SACd,CAAC,CAAC;QAEH,uBAAuB;QACvB,MAAM,aAAa,GAAG,IAAI,KAAK,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC5D,MAAM,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,aAAa,EAAE,SAAS,CAAC,CAAC;QAEnD,YAAY,GAAG,IAAI,SAAS,CAAC;YAC3B,IAAI,EAAE,QAAQ;YACd,IAAI,EAAE,OAAO;YACb,KAAK,EAAE,QAAQ;YACf,WAAW,EAAE,cAAc;YAC3B,IAAI,EAAE,YAAY,CAAC,IAAI;YACvB,SAAS,EAAE,YAAY,CAAC,SAAS;gBAC/B,CAAC,CAAC,MAAM,CAAC,WAAW,CAClB,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,MAAM,CAC3C,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CACvB,CACF;gBACD,CAAC,CAAC,SAAS;YACb,gBAAgB,EAAE,YAAY,CAAC,gBAAgB;gBAC7C,CAAC,CAAC,MAAM,CAAC,WAAW,CAClB,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,gBAAgB,CAAC,CAAC,MAAM,CAClD,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,GAAG,KAAK,GAAG,CACvB,CACF;gBACD,CAAC,CAAC,SAAS;YACb,iBAAiB,EAAE,YAAY,CAAC,iBAAiB;SAClD,CAAC,CAAC;IACL,CAAC;IAED,2DAA2D;IAC3D,YAAY,GAAG,oBAAoB,CAAC,YAAY,CAAC,CAAC;IAElD,MAAM,IAAI,GAAG,YAAY,CAAC,IAAI,CAAC;IAC/B,MAAM,IAAI,GAAG,YAAY,CAAC,IAAI,CAAC;IAE/B,kCAAkC;IAClC,MAAM,iBAAiB,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;IACxD,MAAM,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,iBAAiB,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;IAEjE,0DAA0D;IAC1D,MAAM,aAAa,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;QAC1C,MAAM,KAAK,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;QACnC,OAAO,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;IAC7C,CAAC,CAAC,CAAC;IAEH,8CAA8C;IAC9C,6DAA6D;IAC7D,kFAAkF;IAClF,MAAM,OAAO,GAAG,aAAa,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC;IAC3E,MAAM,MAAM,GAAG,aAAa,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CACvC,YAAY,CAAC,WAAW,CAAC,GAAG,CAAC,IAAI,GAAG,CACrC,CAAC;IACF,MAAM,IAAI,GAAG,aAAa,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IACvE,MAAM,SAAS,GAAG,aAAa,CAAC,MAAM,CAAC;IAEvC,0CAA0C;IAC1C,MAAM,aAAa,GAAG,uBAAuB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAE1D,IAAI,UAAU,GAAG,CAAC,CAAC;IACnB,IAAI,SAAS,GACX,QAAoC,CAAC;IAEvC,IAAI,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;QACvB,UAAU,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC;QAC3C,IAAI,UAAU,KAAK,CAAC,IAAI,aAAa,KAAK,OAAO,EAAE,CAAC;YAClD,SAAS,GAAG,KAA8B,CAAC;QAC7C,CAAC;aAAM,CAAC;YACN,SAAS;gBACP,sBAAgE,CAAC;QACrE,CAAC;IACH,CAAC;IAED,mBAAmB;IACnB,MAAM,SAAS,GAAc;QAC3B,SAAS;QACT,aAAa;QACb,SAAS;QACT,UAAU;KACX,CAAC;IAEF,gCAAgC;IAChC,MAAM,SAAS,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAC1D,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC;IAElD,6CAA6C;IAC7C,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,SAAS,GAAG,SAAS,CAAC,CAAC;IAC1D,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;QACnC,SAAS,CAAC,CAAC,GAAG,SAAS,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC;IACrC,CAAC;IAED,wBAAwB;IACxB,MAAM,QAAQ,GAAU;QACtB,SAAS;QACT,IAAI,EAAE,YAAY,CAAC,IAAI,IAAI,OAAO;QAClC,MAAM;QACN,OAAO;QACP,SAAS;QACT,IAAI;QACJ,QAAQ,EAAE,IAAI,GAAG,EAAE;QACnB,IAAI,EAAE,SAAS,CAAC,IAAkB,EAAE,qCAAqC;KAC1E,CAAC;IAEF,OAAO,QAAQ,CAAC;AAClB,CAAC"}
@@ -134,3 +134,4 @@ function calculateStride(shape) {
134
134
  }
135
135
  return stride;
136
136
  }
137
+ //# sourceMappingURL=to_ngff_image.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"to_ngff_image.js","sourceRoot":"","sources":["../../src/io/to_ngff_image.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAChC,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAWnD;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,WAAW,CAC/B,IAAmD,EACnD,UAA8B,EAAE;IAEhC,MAAM,EACJ,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,EACjB,KAAK,GAAG,EAAE,EACV,WAAW,GAAG,EAAE,EAChB,IAAI,GAAG,OAAO,EACd,KAAK,EAAE,aAAa,GACrB,GAAG,OAAO,CAAC;IAEZ,8CAA8C;IAC9C,IAAI,SAAkD,CAAC;IACvD,IAAI,KAAe,CAAC;IAEpB,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;QACxB,kCAAkC;QAClC,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;YAC3B,IAAI,KAAK,CAAC,OAAO,CAAE,IAAI,CAAC,CAAC,CAAe,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC7C,WAAW;gBACX,MAAM,EAAE,GAAG,IAAoB,CAAC;gBAChC,KAAK,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC;gBACnD,SAAS,GAAG,IAAI,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;gBAE7D,IAAI,GAAG,GAAG,CAAC,CAAC;gBACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;oBAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;wBAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;4BAClC,SAAS,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;wBACjC,CAAC;oBACH,CAAC;gBACH,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,WAAW;gBACX,MAAM,EAAE,GAAG,IAAkB,CAAC;gBAC9B,KAAK,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC;gBAClC,SAAS,GAAG,IAAI,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;gBAElD,IAAI,GAAG,GAAG,CAAC,CAAC;gBACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;oBAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;wBAClC,SAAS,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;oBAC9B,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;aAAM,CAAC;YACN,WAAW;YACX,MAAM,EAAE,GAAG,IAA2B,CAAC;YACvC,KAAK,GAAG,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC;YACpB,SAAS,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,CAAC;QACnC,CAAC;IACH,CAAC;SAAM,CAAC;QACN,oCAAoC;QACpC,4EAA4E;QAC5E,IAAI,aAAa,EAAE,CAAC;YAClB,KAAK,GAAG,CAAC,GAAG,aAAa,CAAC,CAAC;QAC7B,CAAC;aAAM,CAAC;YACN,4CAA4C;YAC5C,KAAK,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QACxB,CAAC;QAED,yCAAyC;QACzC,IAAI,IAAI,YAAY,UAAU,EAAE,CAAC;YAC/B,SAAS,GAAG,IAAI,CAAC;QACnB,CAAC;aAAM,IAAI,IAAI,YAAY,WAAW,EAAE,CAAC;YACvC,SAAS,GAAG,IAAI,CAAC;QACnB,CAAC;aAAM,CAAC;YACN,SAAS,GAAG,IAAI,YAAY,CAAC,IAAyB,CAAC,CAAC;QAC1D,CAAC;IACH,CAAC;IAED,+DAA+D;IAC/D,IAAI,CAAC,aAAa,EAAE,CAAC;QACnB,OAAO,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC;YAClC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QACnB,CAAC;IACH,CAAC;IAED,IAAI,KAAK,CAAC,MAAM,KAAK,IAAI,CAAC,MAAM,EAAE,CAAC;QACjC,MAAM,IAAI,KAAK,CACb,yBAAyB,KAAK,CAAC,MAAM,6BAA6B,IAAI,CAAC,MAAM,GAAG,CACjF,CAAC;IACJ,CAAC;IAED,wCAAwC;IACxC,MAAM,KAAK,GAAgB,IAAI,GAAG,EAAE,CAAC;IACrC,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAE9B,mCAAmC;IACnC,MAAM,UAAU,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;IAE1D,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE;QACxD,KAAK;QACL,WAAW,EAAE,UAAU;QACvB,SAAS,EAAE,SAAS;QACpB,UAAU,EAAE,CAAC;KACd,CAAC,CAAC;IAEH,2BAA2B;IAC3B,MAAM,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,EAAE,EAAE;QAC5B,IAAI,EAAE,SAAyB;QAC/B,KAAK;QACL,MAAM,EAAE,eAAe,CAAC,KAAK,CAAC;KAC/B,CAAC,CAAC;IAEH,qDAAqD;IACrD,MAAM,SAAS,GAA2B,EAAE,CAAC;IAC7C,MAAM,eAAe,GAA2B,EAAE,CAAC;IACnD,MAAM,WAAW,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;IAE7C,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,2CAA2C;QAC3C,IAAI,WAAW,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;YACzB,SAAS,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC;YACnC,eAAe,CAAC,GAAG,CAAC,GAAG,WAAW,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC;QACjD,CAAC;aAAM,CAAC;YACN,kEAAkE;YAClE,IAAI,KAAK,CAAC,GAAG,CAAC,KAAK,SAAS,EAAE,CAAC;gBAC7B,SAAS,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC;YAC9B,CAAC;YACD,IAAI,WAAW,CAAC,GAAG,CAAC,KAAK,SAAS,EAAE,CAAC;gBACnC,eAAe,CAAC,GAAG,CAAC,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC;YAC1C,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,IAAI,SAAS,CAAC;QACnB,IAAI,EAAE,SAAS;QACf,IAAI;QACJ,KAAK,EAAE,SAAS;QAChB,WAAW,EAAE,eAAe;QAC5B,IAAI;QACJ,SAAS,EAAE,SAAS;QACpB,iBAAiB,EAAE,SAAS;KAC7B,CAAC,CAAC;AACL,CAAC;AAED,SAAS,eAAe,CAAC,KAAe;IACtC,MAAM,MAAM,GAAG,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;IACvC,MAAM,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;IAC7B,KAAK,IAAI,CAAC,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;QAC3C,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IAC3C,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC"}
@@ -1 +1 @@
1
- {"version":3,"file":"to_ngff_zarr.d.ts","sourceRoot":"","sources":["../../src/io/to_ngff_zarr.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAChC,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AAE3D,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAGvD,MAAM,WAAW,iBAAiB;IAChC,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,OAAO,CAAC,EAAE,KAAK,GAAG,KAAK,CAAC;IACxB,cAAc,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC7D;AAED,wBAAsB,UAAU,CAC9B,KAAK,EAAE,MAAM,GAAG,WAAW,GAAG,IAAI,CAAC,UAAU,EAC7C,WAAW,EAAE,WAAW,EACxB,OAAO,GAAE,iBAAsB,GAC9B,OAAO,CAAC,IAAI,CAAC,CA0Ff"}
1
+ {"version":3,"file":"to_ngff_zarr.d.ts","sourceRoot":"","sources":["../../src/io/to_ngff_zarr.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAChC,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AAE3D,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAGvD,MAAM,WAAW,iBAAiB;IAChC,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,OAAO,CAAC,EAAE,KAAK,GAAG,KAAK,CAAC;IACxB,cAAc,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC7D;AAED,wBAAsB,UAAU,CAC9B,KAAK,EAAE,MAAM,GAAG,WAAW,GAAG,IAAI,CAAC,UAAU,EAC7C,WAAW,EAAE,WAAW,EACxB,OAAO,GAAE,iBAAsB,GAC9B,OAAO,CAAC,IAAI,CAAC,CAsGf"}
@@ -1,6 +1,5 @@
1
1
  // SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
2
2
  // SPDX-License-Identifier: MIT
3
- import * as dntShim from "../_dnt.shims.js";
4
3
  import * as zarr from "zarrita";
5
4
  import { createQueue } from "../utils/create_queue.js";
6
5
  export async function toNgffZarr(store, multiscales, options = {}) {
@@ -20,7 +19,7 @@ export async function toNgffZarr(store, multiscales, options = {}) {
20
19
  }
21
20
  else {
22
21
  // For local paths, check if we're in a browser environment
23
- if (typeof dntShim.dntGlobalThis !== "undefined") {
22
+ if (typeof window !== "undefined") {
24
23
  throw new Error("Local file paths are not supported in browser environments. Use a MemoryStore instead.");
25
24
  }
26
25
  // Use dynamic import for FileSystemStore in Node.js/Deno environments
@@ -36,31 +35,40 @@ export async function toNgffZarr(store, multiscales, options = {}) {
36
35
  }
37
36
  // Create root location and group with zarrita v0.5.2 API
38
37
  const root = zarr.root(_resolvedStore);
38
+ // Prepare multiscales metadata
39
+ const multiscalesMetadata = {
40
+ version: _version,
41
+ name: multiscales.metadata.name,
42
+ axes: multiscales.metadata.axes,
43
+ datasets: multiscales.metadata.datasets,
44
+ ...(multiscales.metadata.coordinateTransformations && {
45
+ coordinateTransformations: multiscales.metadata.coordinateTransformations,
46
+ }),
47
+ ...(multiscales.metadata.type && {
48
+ type: multiscales.metadata.type,
49
+ }),
50
+ ...(multiscales.metadata.metadata && {
51
+ metadata: multiscales.metadata.metadata,
52
+ }),
53
+ };
39
54
  // Create the root group with OME-Zarr metadata
40
- const rootGroup = await zarr.create(root, {
41
- attributes: {
42
- multiscales: [
43
- {
44
- version: _version,
45
- name: multiscales.metadata.name,
46
- axes: multiscales.metadata.axes,
47
- datasets: multiscales.metadata.datasets,
48
- ...(multiscales.metadata.coordinateTransformations && {
49
- coordinateTransformations: multiscales.metadata.coordinateTransformations,
50
- }),
51
- ...(multiscales.metadata.type && {
52
- type: multiscales.metadata.type,
53
- }),
54
- ...(multiscales.metadata.metadata && {
55
- metadata: multiscales.metadata.metadata,
56
- }),
57
- },
58
- ],
59
- ...(multiscales.metadata.omero && {
60
- omero: multiscales.metadata.omero,
61
- }),
62
- },
63
- });
55
+ // For version 0.5, wrap metadata under "ome" property
56
+ // For version 0.4, place multiscales directly at root
57
+ const attributes = _version === "0.5"
58
+ ? {
59
+ ome: {
60
+ version: _version,
61
+ multiscales: [multiscalesMetadata],
62
+ },
63
+ }
64
+ : {
65
+ multiscales: [multiscalesMetadata],
66
+ };
67
+ // Add OMERO metadata at root level if present (both versions)
68
+ if (multiscales.metadata.omero) {
69
+ attributes.omero = multiscales.metadata.omero;
70
+ }
71
+ const rootGroup = await zarr.create(root, { attributes });
64
72
  // Write each image in the multiscales
65
73
  for (let i = 0; i < multiscales.images.length; i++) {
66
74
  const image = multiscales.images[i];
@@ -318,3 +326,4 @@ function calculateChunkStride(chunkShape) {
318
326
  }
319
327
  return stride;
320
328
  }
329
+ //# sourceMappingURL=to_ngff_zarr.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"to_ngff_zarr.js","sourceRoot":"","sources":["../../src/io/to_ngff_zarr.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAC/B,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAIhC,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAQvD,MAAM,CAAC,KAAK,UAAU,UAAU,CAC9B,KAA6C,EAC7C,WAAwB,EACxB,UAA6B,EAAE;IAE/B,MAAM,UAAU,GAAG,OAAO,CAAC,SAAS,IAAI,IAAI,CAAC;IAC7C,MAAM,QAAQ,GAAG,OAAO,CAAC,OAAO,IAAI,KAAK,CAAC;IAE1C,IAAI,CAAC;QACH,yDAAyD;QACzD,IAAI,cAAqC,CAAC,CAAC,iEAAiE;QAC5G,IAAI,KAAK,YAAY,GAAG,EAAE,CAAC;YACzB,cAAc,GAAG,KAAK,CAAC;QACzB,CAAC;aAAM,IAAI,KAAK,YAAY,IAAI,CAAC,UAAU,EAAE,CAAC;YAC5C,MAAM,IAAI,KAAK,CACb,uGAAuG,CACxG,CAAC;QACJ,CAAC;aAAM,IAAI,KAAK,CAAC,UAAU,CAAC,SAAS,CAAC,IAAI,KAAK,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;YACvE,MAAM,IAAI,KAAK,CACb,8FAA8F,CAC/F,CAAC;QACJ,CAAC;aAAM,CAAC;YACN,2DAA2D;YAC3D,IAAI,OAAO,MAAM,KAAK,WAAW,EAAE,CAAC;gBAClC,MAAM,IAAI,KAAK,CACb,wFAAwF,CACzF,CAAC;YACJ,CAAC;YAED,sEAAsE;YACtE,IAAI,CAAC;gBACH,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,MAAM,CAAC,kBAAkB,CAAC,CAAC;gBAC7D,sDAAsD;gBACtD,MAAM,cAAc,GAAG,KAAK,CAAC,OAAO,CAAC,gBAAgB,EAAE,IAAI,CAAC,CAAC;gBAC7D,cAAc,GAAG,IAAI,eAAe,CAAC,cAAc,CAAC,CAAC;YACvD,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,MAAM,IAAI,KAAK,CACb,mCAAmC,KAAK,8CAA8C,CACvF,CAAC;YACJ,CAAC;QACH,CAAC;QAED,yDAAyD;QACzD,MAAM,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,cAA6B,CAAC,CAAC;QAEtD,+BAA+B;QAC/B,MAAM,mBAAmB,GAAG;YAC1B,OAAO,EAAE,QAAQ;YACjB,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,IAAI;YAC/B,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,IAAI;YAC/B,QAAQ,EAAE,WAAW,CAAC,QAAQ,CAAC,QAAQ;YACvC,GAAG,CAAC,WAAW,CAAC,QAAQ,CAAC,yBAAyB,IAAI;gBACpD,yBAAyB,EACvB,WAAW,CAAC,QAAQ,CAAC,yBAAyB;aACjD,CAAC;YACF,GAAG,CAAC,WAAW,CAAC,QAAQ,CAAC,IAAI,IAAI;gBAC/B,IAAI,EAAE,WAAW,CAAC,QAAQ,CAAC,IAAI;aAChC,CAAC;YACF,GAAG,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ,IAAI;gBACnC,QAAQ,EAAE,WAAW,CAAC,QAAQ,CAAC,QAAQ;aACxC,CAAC;SACH,CAAC;QAEF,+CAA+C;QAC/C,sDAAsD;QACtD,sDAAsD;QACtD,MAAM,UAAU,GAA4B,QAAQ,KAAK,KAAK;YAC5D,CAAC,CAAC;gBACA,GAAG,EAAE;oBACH,OAAO,EAAE,QAAQ;oBACjB,WAAW,EAAE,CAAC,mBAAmB,CAAC;iBACnC;aACF;YACD,CAAC,CAAC;gBACA,WAAW,EAAE,CAAC,mBAAmB,CAAC;aACnC,CAAC;QAEJ,8DAA8D;QAC9D,IAAI,WAAW,CAAC,QAAQ,CAAC,KAAK,EAAE,CAAC;YAC/B,UAAU,CAAC,KAAK,GAAG,WAAW,CAAC,QAAQ,CAAC,KAAK,CAAC;QAChD,CAAC;QAED,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,IAAI,EAAE,EAAE,UAAU,EAAE,CAAC,CAAC;QAE1D,sCAAsC;QACtC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACnD,MAAM,KAAK,GAAG,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;YACpC,MAAM,OAAO,GAAG,WAAW,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;YAEjD,IAAI,CAAC,OAAO,EAAE,CAAC;gBACb,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,EAAE,CAAC,CAAC;YACnE,CAAC;YAED,MAAM,WAAW,CACf,SAAoC,EACpC,KAAK,EACL,OAAO,CAAC,IAAI,CACb,CAAC;QACJ,CAAC;IACH,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,IAAI,KAAK,CACb,6BACE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CACvD,EAAE,CACH,CAAC;IACJ,CAAC;AACH,CAAC;AAED,SAAS,uBAAuB,CAAC,KAAa;IAC5C,0DAA0D;IAC1D,MAAM,QAAQ,GAAkC;QAC9C,IAAI,EAAE,MAAM;QACZ,KAAK,EAAE,OAAO;QACd,KAAK,EAAE,OAAO;QACd,KAAK,EAAE,OAAO;QACd,KAAK,EAAE,OAAO;QACd,MAAM,EAAE,QAAQ;QAChB,MAAM,EAAE,QAAQ;QAChB,MAAM,EAAE,QAAQ;QAChB,OAAO,EAAE,SAAS;QAClB,OAAO,EAAE,SAAS;QAClB,IAAI,EAAE,MAAM;QACZ,kCAAkC;QAClC,EAAE,EAAE,MAAM;QACV,EAAE,EAAE,OAAO;QACX,EAAE,EAAE,OAAO;QACX,EAAE,EAAE,OAAO;QACX,EAAE,EAAE,OAAO;QACX,EAAE,EAAE,QAAQ;QACZ,EAAE,EAAE,QAAQ;QACZ,EAAE,EAAE,QAAQ;QACZ,EAAE,EAAE,SAAS;QACb,EAAE,EAAE,SAAS;KACd,CAAC;IAEF,IAAI,KAAK,IAAI,QAAQ,EAAE,CAAC;QACtB,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC;IACzB,CAAC;SAAM,CAAC;QACN,MAAM,IAAI,KAAK,CAAC,0BAA0B,KAAK,EAAE,CAAC,CAAC;IACrD,CAAC;AACH,CAAC;AAcD,SAAS,wBAAwB,CAAC,KAAoB;IACpD,oDAAoD;IACpD,MAAM,cAAc,GAClB;QACE,IAAI,EAAE,SAAS;QACf,KAAK,EAAE,UAAU;QACjB,KAAK,EAAE,UAAU;QACjB,KAAK,EAAE,aAAa;QACpB,KAAK,EAAE,UAAU;QACjB,MAAM,EAAE,WAAW;QACnB,MAAM,EAAE,WAAW;QACnB,MAAM,EAAE,cAAc;QACtB,OAAO,EAAE,YAAY;QACrB,OAAO,EAAE,YAAY;QACrB,IAAI,EAAE,UAAU,EAAE,6EAA6E;QAC/F,sEAAsE;KACvE,CAAC;IAEJ,MAAM,WAAW,GAAG,cAAc,CAAC,KAAK,CAAC,CAAC;IAC1C,IAAI,WAAW,EAAE,CAAC;QAChB,OAAO,WAAW,CAAC;IACrB,CAAC;SAAM,CAAC;QACN,MAAM,IAAI,KAAK,CAAC,0CAA0C,KAAK,EAAE,CAAC,CAAC;IACrE,CAAC;AACH,CAAC;AAED,KAAK,UAAU,WAAW,CACxB,KAA8B,EAC9B,KAAgB,EAChB,SAAiB;IAEjB,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,kBAAkB,CAAC,KAAK,CAAC,CAAC;QAEzC,8CAA8C;QAC9C,MAAM,YAAY,GAAG,uBAAuB,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAE/D,wBAAwB;QACxB,MAAM,aAAa,GAAG,KAAK,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;QAE/C,kDAAkD;QAClD,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,aAAa,EAAE;YACjD,KAAK,EAAE,KAAK,CAAC,IAAI,CAAC,KAAK;YACvB,SAAS,EAAE,YAAY;YACvB,WAAW,EAAE,MAAM;YACnB,UAAU,EAAE,CAAC;SACd,CAAC,CAAC;QAEH,MAAM,eAAe,CACnB,SAAmD,EACnD,KAAK,CACN,CAAC;IACJ,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,IAAI,KAAK,CACb,gCACE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CACvD,EAAE,CACH,CAAC;IACJ,CAAC;AACH,CAAC;AAED,SAAS,kBAAkB,CAAC,KAAgB;IAC1C,2DAA2D;IAC3D,IAAI,KAAK,CAAC,IAAI,CAAC,MAAM,IAAI,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACtD,OAAO,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC;IAC3B,CAAC;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC,CAAC;AAC5D,CAAC;AAED,KAAK,UAAU,eAAe,CAC5B,SAAiD,EACjD,KAAgB;IAEhB,IAAI,CAAC;QACH,2EAA2E;QAC3E,MAAM,KAAK,GAAG,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC;QAE/B,+CAA+C;QAC/C,MAAM,YAAY,GAAG,qBAAqB,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;QAEpE,4CAA4C;QAC5C,MAAM,UAAU,GAAG,WAAW,EAAE,CAAC;QAEjC,+BAA+B;QAC/B,KAAK,MAAM,UAAU,IAAI,YAAY,EAAE,CAAC;YACtC,UAAU,CAAC,GAAG,CAAC,KAAK,IAAI,EAAE;gBACxB,MAAM,iBAAiB,CAAC,SAAS,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;YACxD,CAAC,CAAC,CAAC;QACL,CAAC;QAED,oCAAoC;QACpC,MAAM,UAAU,CAAC,MAAM,EAAE,CAAC;IAC5B,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,IAAI,KAAK,CACb,+BACE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CACvD,EAAE,CACH,CAAC;IACJ,CAAC;AACH,CAAC;AAED,KAAK,UAAU,iBAAiB,CAC9B,SAAiD,EACjD,KAAgB,EAChB,UAAoB;IAEpB,6BAA6B;IAC7B,MAAM,KAAK,GAAG,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC;IAC/B,MAAM,UAAU,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE,CAAC,GAAG,GAAG,SAAS,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC;IAC7E,MAAM,QAAQ,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,CAC7C,IAAI,CAAC,GAAG,CAAC,KAAK,GAAG,SAAS,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,KAAK,CAAC,GAAG,CAAC,CAAC,CACpD,CAAC;IAEF,wBAAwB;IACxB,MAAM,UAAU,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,EAAE,CAAC,GAAG,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC;IAErE,uDAAuD;IACvD,MAAM,eAAe,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,CACpD,IAAI,CAAC,KAAK,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CACjC,CAAC;IAEF,kDAAkD;IAClD,MAAM,EAAE,IAAI,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,EAAE,eAAe,CAAC,CAAC;IAE9E,oCAAoC;IACpC,MAAM,2BAA2B,GAAG,wBAAwB,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC;IAC9E,MAAM,eAAe,GAAG,wBAAwB,CAC9C,eAAkC,EAClC,SAAS,CAAC,KAAK,EACf,2BAA2B,CAC5B,CAAC;IAEF,2BAA2B;IAC3B,MAAM,YAAY,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC;IAC3D,MAAM,UAAU,GAAG,eAAe,CAAC,UAAU;QAC3C,CAAE,eAAwE;aACvE,iBAAiB,IAAI,CAAC,CAAC,CAAC;IAC7B,IAAI,UAAU,KAAK,YAAY,EAAE,CAAC;QAChC,OAAO,CAAC,KAAK,CAAC,+CAA+C,CAAC,CAAC;QAC/D,OAAO,CAAC,KAAK,CAAC,gBAAgB,EAAE,KAAK,CAAC,CAAC;QACvC,OAAO,CAAC,KAAK,CAAC,gBAAgB,EAAE,UAAU,CAAC,CAAC;QAC5C,OAAO,CAAC,KAAK,CAAC,gBAAgB,EAAE,UAAU,CAAC,CAAC;QAC5C,OAAO,CAAC,KAAK,CAAC,cAAc,EAAE,QAAQ,CAAC,CAAC;QACxC,OAAO,CAAC,KAAK,CAAC,gBAAgB,EAAE,UAAU,CAAC,CAAC;QAC5C,OAAO,CAAC,KAAK,CAAC,kBAAkB,EAAE,YAAY,CAAC,CAAC;QAChD,OAAO,CAAC,KAAK,CAAC,gBAAgB,EAAE,UAAU,CAAC,CAAC;QAC5C,MAAM,IAAI,KAAK,CACb,sCAAsC,YAAY,kBAAkB,UAAU,EAAE,CACjF,CAAC;IACJ,CAAC;IAED,4DAA4D;IAC5D,MAAM,eAAe,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,CACpD,IAAI,CAAC,KAAK,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CACjC,CAAC;IAEF,+CAA+C;IAC/C,MAAM,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,eAAe,EAAE;QACzC,IAAI,EAAE,eAAe;QACrB,KAAK,EAAE,UAAU;QACjB,MAAM,EAAE,oBAAoB,CAAC,UAAU,CAAC;KACzC,CAAC,CAAC;AACL,CAAC;AAED,SAAS,wBAAwB,CAC/B,SAA0B,EAC1B,WAA0B,EAC1B,2BAAkD;IAElD,qCAAqC;IACrC,IACE,SAAS,YAAY,aAAa;QAClC,SAAS,YAAY,cAAc,EACnC,CAAC;QACD,kCAAkC;QAClC,IAAI,SAAS,CAAC,WAAW,KAAK,2BAA2B,EAAE,CAAC;YAC1D,OAAO,SAA4B,CAAC;QACtC,CAAC;aAAM,IAAI,WAAW,KAAK,OAAO,IAAI,WAAW,KAAK,QAAQ,EAAE,CAAC;YAC/D,8BAA8B;YAC9B,MAAM,WAAW,GAAG,IAAI,2BAA2B,CAAC,SAAS,CAAC,MAAM,CAElD,CAAC;YACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC1C,WAAW,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC;YAChC,CAAC;YACD,OAAO,WAAW,CAAC;QACrB,CAAC;aAAM,CAAC;YACN,sCAAsC;YACtC,MAAM,WAAW,GAAG,IAAI,2BAA2B,CAAC,SAAS,CAAC,MAAM,CAQpD,CAAC;YACjB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC1C,WAAW,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;YACxC,CAAC;YACD,OAAO,WAAW,CAAC;QACrB,CAAC;IACH,CAAC;SAAM,IACL,SAAS,YAAY,UAAU;QAC/B,SAAS,YAAY,SAAS;QAC9B,SAAS,YAAY,WAAW;QAChC,SAAS,YAAY,UAAU;QAC/B,SAAS,YAAY,WAAW;QAChC,SAAS,YAAY,UAAU;QAC/B,SAAS,YAAY,YAAY;QACjC,SAAS,YAAY,YAAY,EACjC,CAAC;QACD,8BAA8B;QAC9B,IAAI,SAAS,CAAC,WAAW,KAAK,2BAA2B,EAAE,CAAC;YAC1D,OAAO,SAA4B,CAAC;QACtC,CAAC;aAAM,CAAC;YACN,+BAA+B;YAC/B,IAAI,WAAW,KAAK,OAAO,IAAI,WAAW,KAAK,QAAQ,EAAE,CAAC;gBACxD,sCAAsC;gBACtC,MAAM,WAAW,GAAG,IAAI,2BAA2B,CACjD,SAAS,CAAC,MAAM,CACiB,CAAC;gBACpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;oBAC1C,WAAW,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;gBACxC,CAAC;gBACD,OAAO,WAAW,CAAC;YACrB,CAAC;iBAAM,CAAC;gBACN,qDAAqD;gBACrD,MAAM,aAAa,GAAG,IAAI,GAAG,CAG3B;oBACA,CAAC,UAAU,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;oBACxD,CAAC,SAAS,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,SAAS,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;oBACtD,CAAC,WAAW,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,WAAW,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;oBAC1D,CAAC,UAAU,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;oBACxD,CAAC,WAAW,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,WAAW,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;oBAC1D,CAAC,UAAU,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;oBACxD,CAAC,YAAY,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,YAAY,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;oBAC5D,CAAC,YAAY,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,YAAY,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;iBAC7D,CAAC,CAAC;gBAEH,MAAM,gBAAgB,GAAG,aAAa,CAAC,GAAG,CAAC,2BAA2B,CAAC,CAAC;gBACxE,IAAI,gBAAgB,EAAE,CAAC;oBACrB,OAAO,gBAAgB,CAAC,SAAS,CAAC,CAAC;gBACrC,CAAC;qBAAM,CAAC;oBACN,MAAM,IAAI,KAAK,CACb,mCAAmC,2BAA2B,CAAC,IAAI,EAAE,CACtE,CAAC;gBACJ,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;SAAM,CAAC;QACN,gCAAgC;QAChC,MAAM,IAAI,KAAK,CACb,iCAAiC,SAAS,CAAC,WAAW,CAAC,IAAI,EAAE,CAC9D,CAAC;IACJ,CAAC;AACH,CAAC;AAED,SAAS,qBAAqB,CAAC,KAAe,EAAE,MAAgB;IAC9D,MAAM,OAAO,GAAe,EAAE,CAAC;IAE/B,SAAS,eAAe,CAAC,QAAgB,EAAE,YAAsB;QAC/D,IAAI,QAAQ,KAAK,KAAK,CAAC,MAAM,EAAE,CAAC;YAC9B,OAAO,CAAC,IAAI,CAAC,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC;YAChC,OAAO;QACT,CAAC;QAED,MAAM,SAAS,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC;QACnC,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC;QAEhC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,OAAO,GAAG,SAAS,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;YACxD,YAAY,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC;YAC3B,eAAe,CAAC,QAAQ,GAAG,CAAC,EAAE,YAAY,CAAC,CAAC;QAC9C,CAAC;IACH,CAAC;IAED,eAAe,CAAC,CAAC,EAAE,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC;IAC5C,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,SAAS,oBAAoB,CAAC,UAAoB;IAChD,MAAM,MAAM,GAAG,IAAI,KAAK,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC;IAC5C,MAAM,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;IAElC,KAAK,IAAI,CAAC,GAAG,UAAU,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;QAChD,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,UAAU,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IAChD,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC"}
@@ -460,3 +460,4 @@ export async function downsampleItkWasm(ngffImage, scaleFactors, smoothing) {
460
460
  }
461
461
  return multiscales;
462
462
  }
463
+ //# sourceMappingURL=itkwasm-browser.js.map