@fideus-labs/ngff-zarr 0.2.4 → 0.2.5

package/script/schemas/index.js

@@ -1,101 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.PlateAcquisitionSchema = exports.OmeZarrVersionSchema = exports.OmeZarrVersion05Schema = exports.OmeZarrVersion04Schema = exports.OmeZarrVersion03Schema = exports.OmeZarrVersion02Schema = exports.OmeZarrVersion01Schema = exports.OmeZarrMetadataSchema = exports.OmeZarrCoordinateTransformationSchema = exports.OmeSeriesSchema = exports.OmeZarrOmeroWindowSchema = exports.OmeZarrOmeroSchema = exports.OmeZarrOmeroChannelSchema = exports.OmeMetadataSchema = exports.MultiscalesSchemaV05 = exports.MultiscalesSchemaV01 = exports.MultiscalesSchema = exports.LabelSchemaV04 = exports.LabelPropertySchema = exports.LabelColorSchema = exports.ImageSchemaV05 = exports.ImageSchemaV01 = exports.ImageSchema = exports.DatasetSchemaV05 = exports.DatasetSchemaV01 = exports.AxisSchemaV05 = exports.TranslationSchema = exports.TransformSchema = exports.ScaleSchema = exports.OmeroWindowSchema = exports.OmeroSchema = exports.OmeroChannelSchema = exports.MetadataSchema = exports.IdentitySchema = exports.DatasetSchema = exports.AxisSchema = exports.TimeUnitSchema = exports.TimeAxisSchema = exports.SpaceUnitSchema = exports.SpaceAxisSchema = exports.SpaceAxesNamesSchema = exports.OrientationSchema = exports.ChannelAxisSchema = exports.BaseAxisSchema = exports.AxisTypeSchema = exports.RFC4AxisSchema = exports.RFC4AxesSchema = exports.AxesNamesSchema = exports.AnatomicalOrientationValuesSchema = exports.AnatomicalOrientationSchema = void 0;
-exports.WellSchemaV05 = exports.WellImageSchema = exports.PlateWellSchema = exports.PlateSchemaV05 = exports.PlateRowSchema = exports.PlateColumnSchema = void 0;
-// SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
-// SPDX-License-Identifier: MIT
-// Re-export all schemas with explicit naming to avoid conflicts
-__exportStar(require("./units.js"), exports);
-__exportStar(require("./methods.js"), exports);
-// RFC4 schemas
-var rfc4_js_1 = require("./rfc4.js");
-Object.defineProperty(exports, "AnatomicalOrientationSchema", { enumerable: true, get: function () { return rfc4_js_1.AnatomicalOrientationSchema; } });
-Object.defineProperty(exports, "AnatomicalOrientationValuesSchema", { enumerable: true, get: function () { return rfc4_js_1.AnatomicalOrientationValuesSchema; } });
-Object.defineProperty(exports, "AxesNamesSchema", { enumerable: true, get: function () { return rfc4_js_1.AxesNamesSchema; } });
-Object.defineProperty(exports, "RFC4AxesSchema", { enumerable: true, get: function () { return rfc4_js_1.AxesSchema; } });
-Object.defineProperty(exports, "RFC4AxisSchema", { enumerable: true, get: function () { return rfc4_js_1.AxisSchema; } });
-Object.defineProperty(exports, "AxisTypeSchema", { enumerable: true, get: function () { return rfc4_js_1.AxisTypeSchema; } });
-Object.defineProperty(exports, "BaseAxisSchema", { enumerable: true, get: function () { return rfc4_js_1.BaseAxisSchema; } });
-Object.defineProperty(exports, "ChannelAxisSchema", { enumerable: true, get: function () { return rfc4_js_1.ChannelAxisSchema; } });
-Object.defineProperty(exports, "OrientationSchema", { enumerable: true, get: function () { return rfc4_js_1.OrientationSchema; } });
-Object.defineProperty(exports, "SpaceAxesNamesSchema", { enumerable: true, get: function () { return rfc4_js_1.SpaceAxesNamesSchema; } });
-Object.defineProperty(exports, "SpaceAxisSchema", { enumerable: true, get: function () { return rfc4_js_1.SpaceAxisSchema; } });
-Object.defineProperty(exports, "SpaceUnitSchema", { enumerable: true, get: function () { return rfc4_js_1.SpaceUnitSchema; } });
-Object.defineProperty(exports, "TimeAxisSchema", { enumerable: true, get: function () { return rfc4_js_1.TimeAxisSchema; } });
-Object.defineProperty(exports, "TimeUnitSchema", { enumerable: true, get: function () { return rfc4_js_1.TimeUnitSchema; } });
-// Coordinate systems (RFC5)
-__exportStar(require("./coordinate_systems.js"), exports);
-// Zarr metadata schemas (with RFC4 integration)
-var zarr_metadata_js_1 = require("./zarr_metadata.js");
-Object.defineProperty(exports, "AxisSchema", { enumerable: true, get: function () { return zarr_metadata_js_1.AxisSchema; } });
-Object.defineProperty(exports, "DatasetSchema", { enumerable: true, get: function () { return zarr_metadata_js_1.DatasetSchema; } });
-Object.defineProperty(exports, "IdentitySchema", { enumerable: true, get: function () { return zarr_metadata_js_1.IdentitySchema; } });
-Object.defineProperty(exports, "MetadataSchema", { enumerable: true, get: function () { return zarr_metadata_js_1.MetadataSchema; } });
-Object.defineProperty(exports, "OmeroChannelSchema", { enumerable: true, get: function () { return zarr_metadata_js_1.OmeroChannelSchema; } });
-Object.defineProperty(exports, "OmeroSchema", { enumerable: true, get: function () { return zarr_metadata_js_1.OmeroSchema; } });
-Object.defineProperty(exports, "OmeroWindowSchema", { enumerable: true, get: function () { return zarr_metadata_js_1.OmeroWindowSchema; } });
-Object.defineProperty(exports, "ScaleSchema", { enumerable: true, get: function () { return zarr_metadata_js_1.ScaleSchema; } });
-Object.defineProperty(exports, "TransformSchema", { enumerable: true, get: function () { return zarr_metadata_js_1.TransformSchema; } });
-Object.defineProperty(exports, "TranslationSchema", { enumerable: true, get: function () { return zarr_metadata_js_1.TranslationSchema; } });
-// OME-Zarr specification schemas
-var ome_zarr_js_1 = require("./ome_zarr.js");
-// Axis schemas
-Object.defineProperty(exports, "AxisSchemaV05", { enumerable: true, get: function () { return ome_zarr_js_1.AxisSchemaV05; } });
-// Dataset schemas
-Object.defineProperty(exports, "DatasetSchemaV01", { enumerable: true, get: function () { return ome_zarr_js_1.DatasetSchemaV01; } });
-Object.defineProperty(exports, "DatasetSchemaV05", { enumerable: true, get: function () { return ome_zarr_js_1.DatasetSchemaV05; } });
-Object.defineProperty(exports, "ImageSchema", { enumerable: true, get: function () { return ome_zarr_js_1.ImageSchema; } });
-// Image schemas
-Object.defineProperty(exports, "ImageSchemaV01", { enumerable: true, get: function () { return ome_zarr_js_1.ImageSchemaV01; } });
-Object.defineProperty(exports, "ImageSchemaV05", { enumerable: true, get: function () { return ome_zarr_js_1.ImageSchemaV05; } });
-// Label schemas
-Object.defineProperty(exports, "LabelColorSchema", { enumerable: true, get: function () { return ome_zarr_js_1.LabelColorSchema; } });
-Object.defineProperty(exports, "LabelPropertySchema", { enumerable: true, get: function () { return ome_zarr_js_1.LabelPropertySchema; } });
-Object.defineProperty(exports, "LabelSchemaV04", { enumerable: true, get: function () { return ome_zarr_js_1.LabelSchemaV04; } });
-Object.defineProperty(exports, "MultiscalesSchema", { enumerable: true, get: function () { return ome_zarr_js_1.MultiscalesSchema; } });
-// Multiscales schemas
-Object.defineProperty(exports, "MultiscalesSchemaV01", { enumerable: true, get: function () { return ome_zarr_js_1.MultiscalesSchemaV01; } });
-Object.defineProperty(exports, "MultiscalesSchemaV05", { enumerable: true, get: function () { return ome_zarr_js_1.MultiscalesSchemaV05; } });
-Object.defineProperty(exports, "OmeMetadataSchema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeMetadataSchema; } });
-Object.defineProperty(exports, "OmeZarrOmeroChannelSchema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeroChannelSchema; } });
-Object.defineProperty(exports, "OmeZarrOmeroSchema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeroSchema; } });
-// Core schemas
-Object.defineProperty(exports, "OmeZarrOmeroWindowSchema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeroWindowSchema; } });
-// OME metadata schemas
-Object.defineProperty(exports, "OmeSeriesSchema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeSeriesSchema; } });
-Object.defineProperty(exports, "OmeZarrCoordinateTransformationSchema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeZarrCoordinateTransformationSchema; } });
-// Comprehensive schema
-Object.defineProperty(exports, "OmeZarrMetadataSchema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeZarrMetadataSchema; } });
-Object.defineProperty(exports, "OmeZarrVersion01Schema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeZarrVersion01Schema; } });
-Object.defineProperty(exports, "OmeZarrVersion02Schema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeZarrVersion02Schema; } });
-Object.defineProperty(exports, "OmeZarrVersion03Schema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeZarrVersion03Schema; } });
-Object.defineProperty(exports, "OmeZarrVersion04Schema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeZarrVersion04Schema; } });
-Object.defineProperty(exports, "OmeZarrVersion05Schema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeZarrVersion05Schema; } });
-// Version schemas
-Object.defineProperty(exports, "OmeZarrVersionSchema", { enumerable: true, get: function () { return ome_zarr_js_1.OmeZarrVersionSchema; } });
-// Plate schemas
-Object.defineProperty(exports, "PlateAcquisitionSchema", { enumerable: true, get: function () { return ome_zarr_js_1.PlateAcquisitionSchema; } });
-Object.defineProperty(exports, "PlateColumnSchema", { enumerable: true, get: function () { return ome_zarr_js_1.PlateColumnSchema; } });
-Object.defineProperty(exports, "PlateRowSchema", { enumerable: true, get: function () { return ome_zarr_js_1.PlateRowSchema; } });
-Object.defineProperty(exports, "PlateSchemaV05", { enumerable: true, get: function () { return ome_zarr_js_1.PlateSchemaV05; } });
-Object.defineProperty(exports, "PlateWellSchema", { enumerable: true, get: function () { return ome_zarr_js_1.PlateWellSchema; } });
-// Well schemas
-Object.defineProperty(exports, "WellImageSchema", { enumerable: true, get: function () { return ome_zarr_js_1.WellImageSchema; } });
-Object.defineProperty(exports, "WellSchemaV05", { enumerable: true, get: function () { return ome_zarr_js_1.WellSchemaV05; } });
-// NGFF Image and Multiscales
-__exportStar(require("./ngff_image.js"), exports);
-__exportStar(require("./multiscales.js"), exports);

package/script/schemas/methods.d.ts

@@ -1,3 +0,0 @@
-import { z } from "zod";
-export declare const MethodsSchema: z.ZodTypeAny;
-//# sourceMappingURL=methods.d.ts.map

package/script/schemas/methods.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"methods.d.ts","sourceRoot":"","sources":["../../src/schemas/methods.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,eAAO,MAAM,aAAa,EAAE,CAAC,CAAC,UAI5B,CAAC"}

package/script/schemas/methods.js

@@ -1,11 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.MethodsSchema = void 0;
-// SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
-// SPDX-License-Identifier: MIT
-const zod_1 = require("zod");
-exports.MethodsSchema = zod_1.z.enum([
-    "itkwasm_gaussian",
-    "itkwasm_bin_shrink",
-    "itkwasm_label_image",
-]);

package/script/schemas/multiscales.d.ts

@@ -1,4 +0,0 @@
-import { z } from "zod";
-export declare const ChunkSpecSchema: z.ZodTypeAny;
-export declare const MultiscalesOptionsSchema: z.ZodTypeAny;
-//# sourceMappingURL=multiscales.d.ts.map

package/script/schemas/multiscales.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"multiscales.d.ts","sourceRoot":"","sources":["../../src/schemas/multiscales.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAKxB,eAAO,MAAM,eAAe,EAAE,CAAC,CAAC,UAK9B,CAAC;AAEH,eAAO,MAAM,wBAAwB,EAAE,CAAC,CAAC,UAQvC,CAAC"}

package/script/schemas/multiscales.js

@@ -1,24 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.MultiscalesOptionsSchema = exports.ChunkSpecSchema = void 0;
-// SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
-// SPDX-License-Identifier: MIT
-const zod_1 = require("zod");
-const ngff_image_js_1 = require("./ngff_image.js");
-const zarr_metadata_js_1 = require("./zarr_metadata.js");
-const methods_js_1 = require("./methods.js");
-exports.ChunkSpecSchema = zod_1.z.union([
-    zod_1.z.number(),
-    zod_1.z.array(zod_1.z.number()),
-    zod_1.z.array(zod_1.z.array(zod_1.z.number())),
-    zod_1.z.record(zod_1.z.string(), zod_1.z.union([zod_1.z.number(), zod_1.z.array(zod_1.z.number())]).optional()),
-]);
-exports.MultiscalesOptionsSchema = zod_1.z.object({
-    images: zod_1.z.array(ngff_image_js_1.NgffImageOptionsSchema),
-    metadata: zarr_metadata_js_1.MetadataSchema,
-    scaleFactors: zod_1.z
-        .array(zod_1.z.union([zod_1.z.record(zod_1.z.string(), zod_1.z.number()), zod_1.z.number()]))
-        .optional(),
-    method: methods_js_1.MethodsSchema.optional(),
-    chunks: exports.ChunkSpecSchema.optional(),
-});

package/script/schemas/ngff_image.d.ts

@@ -1,20 +0,0 @@
-import { z } from "zod";
-import { UnitsSchema } from "./units.js";
-declare const ZarrArraySchema: z.ZodObject<{
-    shape: z.ZodArray<z.ZodNumber>;
-    dtype: z.ZodString;
-    chunks: z.ZodArray<z.ZodNumber>;
-    path: z.ZodOptional<z.ZodString>;
-    name: z.ZodOptional<z.ZodString>;
-}>;
-export declare const NgffImageOptionsSchema: z.ZodObject<{
-    data: typeof ZarrArraySchema;
-    dims: z.ZodArray<z.ZodString>;
-    scale: z.ZodRecord<z.ZodString, z.ZodNumber>;
-    translation: z.ZodRecord<z.ZodString, z.ZodNumber>;
-    name: z.ZodDefault<z.ZodString>;
-    axesUnits: z.ZodOptional<z.ZodRecord<z.ZodString, typeof UnitsSchema>>;
-    computedCallbacks: z.ZodDefault<z.ZodArray<z.ZodAny>>;
-}>;
-export {};
-//# sourceMappingURL=ngff_image.d.ts.map

package/script/schemas/ngff_image.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"ngff_image.d.ts","sourceRoot":"","sources":["../../src/schemas/ngff_image.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAGzC,QAAA,MAAM,eAAe,EAAE,CAAC,CAAC,SAAS,CAAC;IACjC,KAAK,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAC/B,KAAK,EAAE,CAAC,CAAC,SAAS,CAAC;IACnB,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAChC,IAAI,EAAE,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IACjC,IAAI,EAAE,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;CAClC,CAMC,CAAC;AAEH,eAAO,MAAM,sBAAsB,EAAE,CAAC,CAAC,SAAS,CAAC;IAC/C,IAAI,EAAE,OAAO,eAAe,CAAC;IAC7B,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAC9B,KAAK,EAAE,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC,SAAS,CAAC,CAAC;IAC7C,WAAW,EAAE,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC,SAAS,CAAC,CAAC;IACnD,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAChC,SAAS,EAAE,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,EAAE,OAAO,WAAW,CAAC,CAAC,CAAC;IACvE,iBAAiB,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC;CACvD,CAQC,CAAC"}

package/script/schemas/ngff_image.js

@@ -1,24 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.NgffImageOptionsSchema = void 0;
-// SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
-// SPDX-License-Identifier: MIT
-const zod_1 = require("zod");
-const units_js_1 = require("./units.js");
-// Since NgffImage now uses zarr.Array directly, we create a basic schema for validation
-const ZarrArraySchema = zod_1.z.object({
-    shape: zod_1.z.array(zod_1.z.number()),
-    dtype: zod_1.z.string(),
-    chunks: zod_1.z.array(zod_1.z.number()),
-    path: zod_1.z.string().optional(),
-    name: zod_1.z.string().optional(),
-});
-exports.NgffImageOptionsSchema = zod_1.z.object({
-    data: ZarrArraySchema,
-    dims: zod_1.z.array(zod_1.z.string()),
-    scale: zod_1.z.record(zod_1.z.string(), zod_1.z.number()),
-    translation: zod_1.z.record(zod_1.z.string(), zod_1.z.number()),
-    name: zod_1.z.string().default("image"),
-    axesUnits: zod_1.z.record(zod_1.z.string(), units_js_1.UnitsSchema).optional(),
-    computedCallbacks: zod_1.z.array(zod_1.z.any()).default([]),
-});