@fideus-labs/ngff-zarr 0.13.0 → 0.15.0

package/esm/browser-mod.d.ts

@@ -1,3 +1,4 @@
+export { config, setWorkerPoolSize } from "./config.js";
 export { type ChunkCache, fromNgffZarr, type FromNgffZarrOptions, type MemoryStore, } from "./io/from_ngff_zarr-browser.js";
 export { itkImageToNgffImage, type ItkImageToNgffImageOptions, } from "./io/itk_image_to_ngff_image.js";
 export { dataTypeToComponentType, ngffImageToItkImage, type NgffImageToItkImageOptions, } from "./io/ngff_image_to_itk_image.js";

package/esm/browser-mod.d.ts.map

@@ -1 +1 @@
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package/esm/browser-mod.js

@@ -5,6 +5,7 @@
 //
 // The browser versions support MemoryStore (Map) and HTTP/HTTPS URLs (read-only),
 // but not local file paths (which require Node.js/Deno filesystem APIs).
+export { config, setWorkerPoolSize } from "./config.js";
 // Browser-compatible I/O modules
 // Note: Uses browser-specific versions that don't import @zarrita/storage
 // (which contains Node.js-specific modules like node:fs, node:buffer, node:path)

package/esm/browser-mod.js.map

@@ -1 +1 @@
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package/esm/config.d.ts

@@ -0,0 +1,52 @@
+/**
+ * Global configuration object.
+ *
+ * @example
+ * ```ts
+ * import { config } from "@fideus-labs/ngff-zarr";
+ *
+ * // Set before first pool usage — no teardown needed.
+ * config.workerPoolSize = 8;
+ * ```
+ */
+export declare const config: {
+    /**
+     * Number of Web Workers used by each worker pool (codec, write, and
+     * omero).  Defaults to `Math.min(navigator.hardwareConcurrency || 4, 16)`.
+     *
+     * Changing this value only affects pools created **after** the change.
+     * Use {@link setWorkerPoolSize} to also terminate existing pools.
+     *
+     * **Performance note:** The default cap of 16 is intentional — very high
+     * values can cause thread-scheduling overhead and increased memory usage
+     * that outweigh any concurrency gains.  Values in the range 4–16 are
+     * recommended for most workloads.
+     */
+    workerPoolSize: number;
+};
+/**
+ * Set the worker pool size and terminate all existing pools.
+ *
+ * This is a convenience wrapper that updates {@link config.workerPoolSize}
+ * and tears down the codec, write-scheduling, and omero worker pools so
+ * they are lazily recreated with the new size on next use.
+ *
+ * **Performance note:** The default pool size is capped at 16 workers
+ * (`Math.min(navigator.hardwareConcurrency || 4, 16)`) to avoid thread
+ * contention on high-core-count systems.  Setting a very large value (e.g.
+ * hundreds of workers) can lead to excessive memory consumption, OS
+ * thread-scheduling overhead, and diminishing — or even negative — returns
+ * in throughput.  Recommended values are typically in the range of 4–16.
+ *
+ * @param size - Positive integer for the new pool size.
+ *
+ * @example
+ * ```ts
+ * import { setWorkerPoolSize } from "@fideus-labs/ngff-zarr";
+ *
+ * // Change pool size at runtime (terminates existing workers).
+ * await setWorkerPoolSize(4);
+ * ```
+ */
+export declare function setWorkerPoolSize(size: number): Promise<void>;
+//# sourceMappingURL=config.d.ts.map

package/esm/config.d.ts.map

@@ -0,0 +1 @@
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package/esm/config.js

@@ -0,0 +1,75 @@
+// SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
+// SPDX-License-Identifier: MIT
+/**
+ * Runtime configuration for @fideus-labs/ngff-zarr.
+ *
+ * Settings can be changed at any time before the first pool usage.
+ * To change pool size after pools have already been created, use
+ * {@link setWorkerPoolSize} which terminates existing pools so they
+ * are lazily recreated with the new size.
+ */
+/** Default pool size: `Math.min(navigator.hardwareConcurrency || 4, 16)`. */
+const DEFAULT_POOL_SIZE = Math.min((typeof navigator !== "undefined" && navigator?.hardwareConcurrency) || 4, 16);
+/**
+ * Global configuration object.
+ *
+ * @example
+ * ```ts
+ * import { config } from "@fideus-labs/ngff-zarr";
+ *
+ * // Set before first pool usage — no teardown needed.
+ * config.workerPoolSize = 8;
+ * ```
+ */
+export const config = {
+    /**
+     * Number of Web Workers used by each worker pool (codec, write, and
+     * omero).  Defaults to `Math.min(navigator.hardwareConcurrency || 4, 16)`.
+     *
+     * Changing this value only affects pools created **after** the change.
+     * Use {@link setWorkerPoolSize} to also terminate existing pools.
+     *
+     * **Performance note:** The default cap of 16 is intentional — very high
+     * values can cause thread-scheduling overhead and increased memory usage
+     * that outweigh any concurrency gains.  Values in the range 4–16 are
+     * recommended for most workloads.
+     */
+    workerPoolSize: DEFAULT_POOL_SIZE,
+};
+/**
+ * Set the worker pool size and terminate all existing pools.
+ *
+ * This is a convenience wrapper that updates {@link config.workerPoolSize}
+ * and tears down the codec, write-scheduling, and omero worker pools so
+ * they are lazily recreated with the new size on next use.
+ *
+ * **Performance note:** The default pool size is capped at 16 workers
+ * (`Math.min(navigator.hardwareConcurrency || 4, 16)`) to avoid thread
+ * contention on high-core-count systems.  Setting a very large value (e.g.
+ * hundreds of workers) can lead to excessive memory consumption, OS
+ * thread-scheduling overhead, and diminishing — or even negative — returns
+ * in throughput.  Recommended values are typically in the range of 4–16.
+ *
+ * @param size - Positive integer for the new pool size.
+ *
+ * @example
+ * ```ts
+ * import { setWorkerPoolSize } from "@fideus-labs/ngff-zarr";
+ *
+ * // Change pool size at runtime (terminates existing workers).
+ * await setWorkerPoolSize(4);
+ * ```
+ */
+export async function setWorkerPoolSize(size) {
+    if (!Number.isInteger(size) || size < 1) {
+        throw new Error(`workerPoolSize must be a positive integer, got ${size}`);
+    }
+    config.workerPoolSize = size;
+    // Dynamic imports to avoid circular dependencies — config.ts is imported
+    // by both worker_pool.ts and compute_omero.ts.
+    const { terminateWorkerPool } = await import("./utils/worker_pool.js");
+    const { terminateOmeroWorkerPool } = await import("./utils/compute_omero.js");
+    terminateWorkerPool();
+    terminateOmeroWorkerPool();
+}
+//# sourceMappingURL=config.js.map

package/esm/config.js.map

@@ -0,0 +1 @@
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package/esm/mod.d.ts

@@ -1,3 +1,4 @@
+export { config, setWorkerPoolSize } from "./config.js";
 export * from "./io/from_ngff_zarr.js";
 export * from "./io/hcs.js";
 export * from "./io/itk_image_to_ngff_image.js";

package/esm/mod.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"mod.d.ts","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAGA,cAAc,wBAAwB,CAAC;AACvC,cAAc,aAAa,CAAC;AAC5B,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAChD,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC;AAEhE,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,cAAc,sBAAsB,CAAC;AACrC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,gBAAgB,CAAC;AAC/B,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kBAAkB,CAAC;AACjC,cAAc,0BAA0B,CAAC;AACzC,YAAY,EAAE,SAAS,EAAE,MAAM,mBAAmB,CAAC;AACnD,OAAO,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AACnE,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,4BAA4B,CAAC;AAChF,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC"}
+{"version":3,"file":"mod.d.ts","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AACxD,cAAc,wBAAwB,CAAC;AACvC,cAAc,aAAa,CAAC;AAC5B,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAChD,YAAY,EAAE,uBAAuB,EAAE,MAAM,kBAAkB,CAAC;AAEhE,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,cAAc,sBAAsB,CAAC;AACrC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,gBAAgB,CAAC;AAC/B,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kBAAkB,CAAC;AACjC,cAAc,0BAA0B,CAAC;AACzC,YAAY,EAAE,SAAS,EAAE,MAAM,mBAAmB,CAAC;AACnD,OAAO,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AACnE,YAAY,EACV,kCAAkC,EAClC,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,4BAA4B,CAAC;AAChF,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC"}

package/esm/mod.js

@@ -1,5 +1,6 @@
 // SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
 // SPDX-License-Identifier: MIT
+export { config, setWorkerPoolSize } from "./config.js";
 export * from "./io/from_ngff_zarr.js";
 export * from "./io/hcs.js";
 export * from "./io/itk_image_to_ngff_image.js";

package/esm/mod.js.map

@@ -1 +1 @@
-{"version":3,"file":"mod.js","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAE/B,cAAc,wBAAwB,CAAC;AACvC,cAAc,aAAa,CAAC;AAC5B,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAEhD,gBAAgB;AAChB,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,cAAc,sBAAsB,CAAC;AACrC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,gBAAgB,CAAC;AAC/B,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kBAAkB,CAAC;AACjC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAKnE,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,4BAA4B,CAAC;AAChF,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC"}
+{"version":3,"file":"mod.js","sourceRoot":"","sources":["../src/mod.ts"],"names":[],"mappings":"AAAA,wDAAwD;AACxD,+BAA+B;AAE/B,OAAO,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,aAAa,CAAC;AACxD,cAAc,wBAAwB,CAAC;AACvC,cAAc,aAAa,CAAC;AAC5B,cAAc,iCAAiC,CAAC;AAChD,cAAc,iCAAiC,CAAC;AAEhD,gBAAgB;AAChB,OAAO,EACL,2BAA2B,EAC3B,cAAc,EACd,SAAS,EACT,gBAAgB,EAChB,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,cAAc,sBAAsB,CAAC;AACrC,cAAc,kCAAkC,CAAC;AACjD,cAAc,sBAAsB,CAAC;AACrC,cAAc,0BAA0B,CAAC;AACzC,cAAc,yBAAyB,CAAC;AACxC,cAAc,oBAAoB,CAAC;AACnC,cAAc,4BAA4B,CAAC;AAC3C,cAAc,4BAA4B,CAAC;AAC3C,cAAc,gBAAgB,CAAC;AAC/B,cAAc,oBAAoB,CAAC;AACnC,cAAc,wBAAwB,CAAC;AACvC,cAAc,uBAAuB,CAAC;AACtC,cAAc,iBAAiB,CAAC;AAChC,cAAc,+BAA+B,CAAC;AAC9C,cAAc,kBAAkB,CAAC;AACjC,cAAc,0BAA0B,CAAC;AAEzC,OAAO,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAKnE,OAAO,EACL,2BAA2B,EAC3B,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,wBAAwB,GACzB,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACL,UAAU,EACV,aAAa,EACb,cAAc,EACd,iBAAiB,EACjB,eAAe,GAChB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,4BAA4B,CAAC;AAChF,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EACL,aAAa,EACb,qBAAqB,EACrB,UAAU,GACX,MAAM,2BAA2B,CAAC;AACnC,OAAO,EACL,gBAAgB,EAChB,WAAW,EACX,gBAAgB,GACjB,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC"}

package/esm/schemas/ome_zarr.d.ts

@@ -286,20 +286,17 @@ export declare const PlateSchemaV05: z.ZodObject<{
         version: z.ZodLiteral<"0.5">;
     }, z.core.$strip>;
 }, z.core.$strip>;
-export declare const WellImageSchema: z.ZodType<{
-    acquisition?: number | undefined;
-    path: string;
-}>;
+export declare const WellImageSchema: z.ZodObject<{
+    acquisition: z.ZodOptional<z.ZodNumber>;
+    path: z.ZodString;
+}, z.core.$strip>;
 export declare const WellSchemaV05: z.ZodObject<{
     ome: z.ZodObject<{
         well: z.ZodObject<{
-            images: z.ZodArray<z.ZodType<{
-                acquisition?: number | undefined;
-                path: string;
-            }, unknown, z.core.$ZodTypeInternals<{
-                acquisition?: number | undefined;
-                path: string;
-            }, unknown>>>;
+            images: z.ZodArray<z.ZodObject<{
+                acquisition: z.ZodOptional<z.ZodNumber>;
+                path: z.ZodString;
+            }, z.core.$strip>>;
         }, z.core.$strip>;
         version: z.ZodLiteral<"0.5">;
     }, z.core.$strip>;
@@ -569,13 +566,10 @@ export declare const OmeZarrMetadataSchema: z.ZodUnion<readonly [z.ZodObject<{
 }, z.core.$strip>, z.ZodObject<{
     ome: z.ZodObject<{
         well: z.ZodObject<{
-            images: z.ZodArray<z.ZodType<{
-                acquisition?: number | undefined;
-                path: string;
-            }, unknown, z.core.$ZodTypeInternals<{
-                acquisition?: number | undefined;
-                path: string;
-            }, unknown>>>;
+            images: z.ZodArray<z.ZodObject<{
+                acquisition: z.ZodOptional<z.ZodNumber>;
+                path: z.ZodString;
+            }, z.core.$strip>>;
         }, z.core.$strip>;
         version: z.ZodLiteral<"0.5">;
     }, z.core.$strip>;

package/esm/schemas/ome_zarr.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"ome_zarr.d.ts","sourceRoot":"","sources":["../../src/schemas/ome_zarr.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,eAAO,MAAM,sBAAsB,qBAAmB,CAAC;AACvD,eAAO,MAAM,sBAAsB,qBAAmB,CAAC;AACvD,eAAO,MAAM,sBAAsB,qBAAmB,CAAC;AACvD,eAAO,MAAM,sBAAsB,qBAAmB,CAAC;AACvD,eAAO,MAAM,sBAAsB,qBAAmB,CAAC;AAEvD,eAAO,MAAM,oBAAoB,gIAM/B,CAAC;AAGH,eAAO,MAAM,iBAAiB;;;;;iBAK5B,CAAC;AAEH,eAAO,MAAM,kBAAkB;;;;;;;;;;;iBAM7B,CAAC;AAEH,eAAO,MAAM,qBAAqB;;;;;;;;;;;iBAMhC,CAAC;AAEH,eAAO,MAAM,WAAW;;;;;;;;;;;;;iBAEtB,CAAC;AAGH,eAAO,MAAM,gBAAgB;;iBAE3B,CAAC;AAEH,eAAO,MAAM,qCAAqC;;;;;;mBAShD,CAAC;AAEH,eAAO,MAAM,gBAAgB;;;;;;;;;iBAK3B,CAAC;AAGH,eAAO,MAAM,aAAa;;;;;;;;;;;mBAYxB,CAAC;AAGH,eAAO,MAAM,oBAAoB;;;;;;;;;;iBAU/B,CAAC;AAEH,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAqB/B,CAAC;AAGH,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;iBAGzB,CAAC;AAEH,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAMzB,CAAC;AAGH,eAAO,MAAM,gBAAgB;;;iBAG3B,CAAC;AAEH,eAAO,MAAM,mBAAmB;;iBAE9B,CAAC;AAEH,eAAO,MAAM,cAAc;;;;;;;;;;;;;;iBAazB,CAAC;AAGH,eAAO,MAAM,sBAAsB,EAAE,CAAC,CAAC,OAAO,CAAC;IAC7C,EAAE,EAAE,MAAM,CAAC;IACX,iBAAiB,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACvC,IAAI,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC1B,WAAW,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACjC,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,OAAO,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CAC9B,CAOC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,CAAC,CAAC,OAAO,CAAC;IACxC,IAAI,EAAE,MAAM,CAAC;CACd,CAEC,CAAC;AAEH,eAAO,MAAM,cAAc,EAAE,CAAC,CAAC,OAAO,CAAC;IACrC,IAAI,EAAE,MAAM,CAAC;CACd,CAEC,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,CAAC,CAAC,OAAO,CAAC;IACtC,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC;CACrB,CAIC,CAAC;AAEH,eAAO,MAAM,cAAc;;;;oBArCrB,MAAM;oCACU,MAAM,GAAG,SAAS;uBAC/B,MAAM,GAAG,SAAS;8BACX,MAAM,GAAG,SAAS;4BACpB,MAAM,GAAG,SAAS;0BACpB,MAAM,GAAG,SAAS;;oBALxB,MAAM;oCACU,MAAM,GAAG,SAAS;uBAC/B,MAAM,GAAG,SAAS;8BACX,MAAM,GAAG,SAAS;4BACpB,MAAM,GAAG,SAAS;0BACpB,MAAM,GAAG,SAAS;;;;;sBAWtB,MAAM;;sBAAN,MAAM;;;sBAMN,MAAM;;sBAAN,MAAM;;;sBAMN,MAAM;0BACF,MAAM;6BACH,MAAM;;sBAFb,MAAM;0BACF,MAAM;6BACH,MAAM;;;;;iBAmBnB,CAAC;AAGH,eAAO,MAAM,eAAe;;;iBAiB1B,CAAC;AAEH,eAAO,MAAM,aAAa;;;;;;;;;;iBAOxB,CAAC;AAGH,eAAO,MAAM,eAAe;;iBAE1B,CAAC;AAEH,eAAO,MAAM,iBAAiB;;;;;;;iBAK5B,CAAC;AAGH,eAAO,MAAM,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;mBAA4C,CAAC;AAErE,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;mBAG5B,CAAC;AAGH,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;oBArG5B,MAAM;oCACU,MAAM,GAAG,SAAS;uBAC/B,MAAM,GAAG,SAAS;8BACX,MAAM,GAAG,SAAS;4BACpB,MAAM,GAAG,SAAS;0BACpB,MAAM,GAAG,SAAS;;oBALxB,MAAM;oCACU,MAAM,GAAG,SAAS;uBAC/B,MAAM,GAAG,SAAS;8BACX,MAAM,GAAG,SAAS;4BACpB,MAAM,GAAG,SAAS;0BACpB,MAAM,GAAG,SAAS;;;;;sBAWtB,MAAM;;sBAAN,MAAM;;;sBAMN,MAAM;;sBAAN,MAAM;;;sBAMN,MAAM;0BACF,MAAM;6BACH,MAAM;;sBAFb,MAAM;0BACF,MAAM;6BACH,MAAM;;;;;;;;;;;;;;;;;;;;;;mBA8EnB,CAAC;AAGH,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAClE,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAC9D,MAAM,MAAM,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,WAAW,CAAC,CAAC;AAChD,MAAM,MAAM,wBAAwB,GAAG,CAAC,CAAC,KAAK,CAC5C,OAAO,qCAAqC,CAC7C,CAAC;AACF,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC;AAC1D,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC;AAC1D,MAAM,MAAM,OAAO,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,aAAa,CAAC,CAAC;AACpD,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAClE,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAClE,MAAM,MAAM,QAAQ,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AACtD,MAAM,MAAM,QAAQ,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AACtD,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC;AAC1D,MAAM,MAAM,aAAa,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AAChE,MAAM,MAAM,QAAQ,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AACtD,MAAM,MAAM,gBAAgB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,sBAAsB,CAAC,CAAC;AACtE,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,QAAQ,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AACtD,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AACxD,MAAM,MAAM,QAAQ,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AACtD,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AACxD,MAAM,MAAM,OAAO,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,aAAa,CAAC,CAAC;AACpD,MAAM,MAAM,SAAS,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AACxD,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,WAAW,CAAC,CAAC;AAChD,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,eAAe,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,qBAAqB,CAAC,CAAC"}

package/esm/schemas/ome_zarr.js

@@ -171,7 +171,12 @@ export const PlateSchemaV05 = z.object({
 // Well schemas
 export const WellImageSchema = z.object({
     acquisition: z.number().optional(),
-    path: z.string().regex(/^[A-Za-z0-9]+$/),
+    path: z
+        .string()
+        .min(1)
+        .regex(/^[-A-Za-z0-9_.]+$/, "Path must only contain a-z, A-Z, 0-9, -, _, .")
+        .refine((val) => !/^\.+$/.test(val), "Path must not consist only of periods")
+        .refine((val) => !val.startsWith("__"), "Path must not start with '__'"),
 });
 export const WellSchemaV05 = z.object({
     ome: z.object({

package/esm/schemas/ome_zarr.js.map

@@ -1 +1 @@
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package/esm/utils/compute_omero.d.ts.map

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+{"version":3,"file":"compute_omero.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero.ts"],"names":[],"mappings":"AAmBA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,yBAAyB,CAAC;AAC3D,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACxD,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,2BAA2B,CAAC;AACvD,OAAO,EAGL,KAAK,kCAAkC,EACvC,KAAK,mBAAmB,EAOzB,MAAM,2BAA2B,CAAC;AAInC,OAAO,EACL,wBAAwB,EACxB,KAAK,kCAAkC,EACvC,KAAK,mBAAmB,EACxB,cAAc,EACd,gBAAgB,EAChB,cAAc,EACd,oBAAoB,EACpB,aAAa,EACb,iBAAiB,GAClB,MAAM,2BAA2B,CAAC;AAiCnC;;;GAGG;AACH,wBAAgB,wBAAwB,IAAI,IAAI,CAS/C;AA2QD;;;;;;;;;;GAUG;AACH,wBAAsB,yBAAyB,CAC7C,KAAK,EAAE,SAAS,EAChB,OAAO,GAAE,mBAAwB,GAChC,OAAO,CAAC,KAAK,CAAC,CA0KhB;AAMD;;;;;;;;;GASG;AACH,wBAAsB,2BAA2B,CAC/C,WAAW,EAAE,WAAW,EACxB,OAAO,GAAE,kCAAuC,GAC/C,OAAO,CAAC,KAAK,CAAC,CAuBhB"}

package/esm/utils/compute_omero.js

@@ -2,6 +2,7 @@
 // SPDX-License-Identifier: MIT
 import { createCacheKey, readArrayMetadata } from "@fideus-labs/fizarrita";
 import { WorkerPool } from "@fideus-labs/worker-pool";
+import { config } from "../config.js";
 import { buildOmeroFromAccumulators, createAccumulator, extractChannel, mergeAccumulators, updateAccumulator, validateColor, validateQuantiles, } from "./compute_omero-shared.js";
 import { getMetaId, workerDecodeAndStats } from "./omero_worker_rpc.js";
 // Re-export shared utilities for backward compatibility
@@ -9,14 +10,12 @@ export { computeChannelStatistics, extractChannel, getDefaultColors, GLASBEY_COL
 // ---------------------------------------------------------------------------
 // Worker pool for omero computation
 // ---------------------------------------------------------------------------
-/** Pool size for the omero worker pool. */
-const POOL_SIZE = Math.min(typeof navigator !== "undefined" ? navigator?.hardwareConcurrency || 4 : 4, 16);
 /** Blob URL used by inlined browser builds — set by inline_worker.ts. */
 let workerBlobUrl = null;
 let _omeroPool = null;
 function getOmeroPool() {
     if (!_omeroPool) {
-        _omeroPool = new WorkerPool(POOL_SIZE);
+        _omeroPool = new WorkerPool(config.workerPoolSize);
     }
     return _omeroPool;
 }

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package/esm/utils/worker_pool.d.ts

@@ -7,8 +7,9 @@
  * - **Write scheduling pool**: Used by `createWriteQueue()` for bounding
  *   concurrent chunk-level write pipelines (get + transform + set).
  *
- * Both pools are lazily initialized singletons with pool size
- * `Math.min(navigator?.hardwareConcurrency || 4, 16)`.
+ * Both pools are lazily initialized singletons whose size is controlled
+ * by {@link config.workerPoolSize} (default:
+ * `Math.min(navigator?.hardwareConcurrency || 4, 16)`).
  */
 import type { GetWorkerOptions, SetWorkerOptions } from "@fideus-labs/fizarrita";
 import type { Array as ZarrArray, Chunk, DataType, Mutable, Readable, Scalar, Slice } from "zarrita";
@@ -48,7 +49,7 @@ export type ChunkQueue = {
  * outer scheduling tasks do not compete with inner codec worker tasks.
  *
  * Each queued function runs with one pool slot held; the pool bounds
- * concurrency to `Math.min(navigator?.hardwareConcurrency || 4, 16)`.
+ * concurrency to {@link config.workerPoolSize}.
  */
 export declare function createWriteQueue(): ChunkQueue;
 /**

package/esm/utils/worker_pool.d.ts.map

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package/esm/utils/worker_pool.js

@@ -3,8 +3,7 @@
 import { getWorker, setWorker } from "@fideus-labs/fizarrita";
 import { WorkerPool } from "@fideus-labs/worker-pool";
 import * as zarr from "zarrita";
-/** Pool size for both codec and write scheduling pools. */
-const POOL_SIZE = Math.min((typeof navigator !== "undefined" && navigator?.hardwareConcurrency) || 4, 16);
+import { config } from "../config.js";
 /** Whether SharedArrayBuffer is available in this environment. */
 const USE_SHARED_ARRAY_BUFFER = typeof SharedArrayBuffer !== "undefined";
 // ---------------------------------------------------------------------------
@@ -13,7 +12,7 @@ const USE_SHARED_ARRAY_BUFFER = typeof SharedArrayBuffer !== "undefined";
 let _codecPool = null;
 function getCodecPool() {
     if (!_codecPool) {
-        _codecPool = new WorkerPool(POOL_SIZE);
+        _codecPool = new WorkerPool(config.workerPoolSize);
     }
     return _codecPool;
 }
@@ -23,7 +22,7 @@ function getCodecPool() {
 let _writePool = null;
 function getWritePool() {
     if (!_writePool) {
-        _writePool = new WorkerPool(POOL_SIZE);
+        _writePool = new WorkerPool(config.workerPoolSize);
     }
     return _writePool;
 }
@@ -154,7 +153,7 @@ export async function zarrSet(arr, selection, value, opts) {
  * outer scheduling tasks do not compete with inner codec worker tasks.
  *
  * Each queued function runs with one pool slot held; the pool bounds
- * concurrency to `Math.min(navigator?.hardwareConcurrency || 4, 16)`.
+ * concurrency to {@link config.workerPoolSize}.
  */
 export function createWriteQueue() {
     const pool = getWritePool();

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fideus-labs/ngff-zarr",
-  "version": "0.13.0",
+  "version": "0.15.0",
   "description": "TypeScript implementation of ngff-zarr for reading and writing OME-Zarr files",
   "license": "MIT",
   "type": "module",