@fideus-labs/ngff-zarr 0.12.0 → 0.12.2

package/esm/utils/codecs.d.ts

@@ -32,27 +32,7 @@ export declare function typeSizeForDtype(dtype: string): number;
  * which is not spec-compliant and causes errors in other zarr v3
  * implementations (e.g., Python zarr-python).
  */
-export declare function defaultCodecs(dataType: string): ({
-    name: string;
-    configuration: {
-        endian: string;
-        cname?: undefined;
-        clevel?: undefined;
-        shuffle?: undefined;
-        typesize?: undefined;
-        blocksize?: undefined;
-    };
-} | {
-    name: string;
-    configuration: {
-        cname: string;
-        clevel: number;
-        shuffle: string;
-        typesize: number;
-        blocksize: number;
-        endian?: undefined;
-    };
-})[];
+export declare function defaultCodecs(dataType: string): ZarrCodec[];
 /**
  * Build an uncompressed zarr v3 codec pipeline.
  *

package/esm/utils/codecs.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"codecs.d.ts","sourceRoot":"","sources":["../../src/utils/codecs.ts"],"names":[],"mappings":"AAGA;;;;;GAKG;AACH,MAAM,MAAM,SAAS,GAAG;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACxC,CAAC;AAEF;;;;;;;GAOG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAgBtD;AAED;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,aAAa,CAAC,QAAQ,EAAE,MAAM,GAAG,SAAS,EAAE,CAc3D;AAED;;;;;;;;GAQG;AACH,wBAAgB,eAAe,IAAI,SAAS,EAAE,CAE7C"}

package/esm/utils/compute_omero-shared.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"compute_omero-shared.d.ts","sourceRoot":"","sources":["../../src/utils/compute_omero-shared.ts"],"names":[],"mappings":"AAGA;;;;GAIG;AAEH,OAAO,KAAK,EACV,KAAK,EAGN,MAAM,2BAA2B,CAAC;AAEnC;;;;;GAKG;AACH,eAAO,MAAM,cAAc,EAAE,SAAS,MAAM,EAiQlC,CAAC;AAEX;;;GAGG;AACH,eAAO,MAAM,oBAAoB,QAAS,CAAC;AAE3C;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,EAAE,CAS5D;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAanE;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAOjD;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,YAAY,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,MAAM,GAAG,MAAM,CAkBzE;AAED;;;GAGG;AACH,MAAM,WAAW,4BAA4B;IAC3C,GAAG,EAAE,MAAM,CAAC;IACZ,GAAG,EAAE,MAAM,CAAC;IACZ,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;GAEG;AACH,wBAAgB,iBAAiB,IAAI,4BAA4B,CAOhE;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,GAAG,EAAE,4BAA4B,EACjC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,GACvB,IAAI,CAwBN;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAChC,GAAG,EAAE,4BAA4B,EACjC,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAC1B;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAY3D;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAC/B,CAAC,EAAE,4BAA4B,EAC/B,CAAC,EAAE,4BAA4B,GAC9B,4BAA4B,CA4C9B;AAED;;;GAGG;AACH,wBAAgB,wBAAwB,CACtC,IAAI,EAAE,SAAS,CAAC,MAAM,CAAC,EACvB,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,GAC1B;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAI3D;AAED;;GAEG;AACH,wBAAgB,cAAc,CAC5B,IAAI,EAAE,SAAS,CAAC,MAAM,CAAC,EACvB,KAAK,EAAE,SAAS,MAAM,EAAE,EACxB,YAAY,EAAE,MAAM,EACpB,eAAe,EAAE,MAAM,GACtB,MAAM,EAAE,CA8BV;AAED;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,4FAA4F;IAC5F,SAAS,CAAC,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC7B,uEAAuE;IACvE,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B,uDAAuD;IACvD,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B;;;;;OAKG;IACH,KAAK,CAAC,EAAE,OAAO,wBAAwB,EAAE,UAAU,GAAG,SAAS,CAAC;IAChE;;;;;OAKG;IACH,UAAU,CAAC,EACP,CAAC,CAAC,eAAe,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,KAAK,IAAI,CAAC,GACxD,SAAS,CAAC;CACf;AAED;;GAEG;AACH,MAAM,WAAW,kCACf,SAAQ,mBAAmB;CAAG;AAEhC;;GAEG;AACH,wBAAgB,0BAA0B,CACxC,YAAY,EAAE,4BAA4B,EAAE,EAC5C,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,EAC3B,MAAM,CAAC,EAAE,MAAM,EAAE,EACjB,MAAM,CAAC,EAAE,MAAM,EAAE,GAChB,KAAK,CAkDP;AAED;;GAEG;AACH,MAAM,WAAW,uBAAuB;IACtC,KAAK,EAAE,SAAS,MAAM,EAAE,CAAC;IACzB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,SAAS,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC5B,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;IAC9B,MAAM,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC;CAC/B;AAED;;GAEG;AACH,MAAM,WAAW,sBAAsB;IACrC,SAAS,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;CAC9B"}

package/esm/utils/compute_omero-shared.js

@@ -383,28 +383,45 @@ export function finalizeStatistics(acc, quantiles) {
  * Used to combine partial results from parallel per-chunk workers.
  */
 export function mergeAccumulators(a, b) {
-    const merged = {
+    const totalCount = a.count + b.count;
+    // When neither accumulator has data, return an empty accumulator
+    if (totalCount === 0) {
+        return {
+            min: Math.min(a.min, b.min),
+            max: Math.max(a.max, b.max),
+            count: 0,
+            sample: [],
+        };
+    }
+    // Build a merged sample that is proportionally representative of each
+    // population.  Each accumulator's reservoir is a uniform random sample
+    // of its population, so we select from each reservoir in proportion to
+    // its population size (count) to keep the combined sample unbiased.
+    const k = QUANTILE_SAMPLE_SIZE;
+    const aWeight = a.count / totalCount;
+    const aTarget = Math.round(k * aWeight);
+    const bTarget = k - aTarget;
+    // Helper: take `want` random elements from `src` (Fisher-Yates partial shuffle)
+    function subsample(src, want) {
+        if (want >= src.length)
+            return src.slice();
+        const arr = src.slice();
+        for (let i = 0; i < want; i++) {
+            const j = i + Math.floor(Math.random() * (arr.length - i));
+            const tmp = arr[i];
+            arr[i] = arr[j];
+            arr[j] = tmp;
+        }
+        return arr.slice(0, want);
+    }
+    const aSamples = subsample(a.sample, aTarget);
+    const bSamples = subsample(b.sample, bTarget);
+    return {
         min: Math.min(a.min, b.min),
         max: Math.max(a.max, b.max),
-        count: a.count + b.count,
-        sample: [...a.sample, ...b.sample],
+        count: totalCount,
+        sample: aSamples.concat(bSamples),
     };
-    // Downsample if combined reservoir exceeds limit
-    if (merged.sample.length > QUANTILE_SAMPLE_SIZE) {
-        // Use reservoir sampling over the concatenated sample for unbiased downsampling
-        const k = QUANTILE_SAMPLE_SIZE;
-        const n = merged.sample.length;
-        // Treat the first k elements as the initial reservoir and
-        // stream the remaining elements, applying the reservoir update rule.
-        for (let i = k; i < n; i++) {
-            const j = Math.floor(Math.random() * (i + 1));
-            if (j < k) {
-                merged.sample[j] = merged.sample[i];
-            }
-        }
-        merged.sample.length = k;
-    }
-    return merged;
 }
 /**
  * Compute channel statistics from array data (non-streaming version).

package/esm/utils/compute_omero-shared.js.map

@@ -1 +1 @@
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