@fideus-labs/ngff-zarr 0.11.0 → 0.12.1

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Files changed (42) hide show
  1. package/esm/browser-mod.d.ts +2 -0
  2. package/esm/browser-mod.d.ts.map +1 -1
  3. package/esm/browser-mod.js +1 -0
  4. package/esm/browser-mod.js.map +1 -1
  5. package/esm/io/itk_image_to_ngff_image.d.ts.map +1 -1
  6. package/esm/io/itk_image_to_ngff_image.js +63 -6
  7. package/esm/io/itk_image_to_ngff_image.js.map +1 -1
  8. package/esm/methods/itkwasm-browser.d.ts +2 -1
  9. package/esm/methods/itkwasm-browser.d.ts.map +1 -1
  10. package/esm/methods/itkwasm-browser.js +30 -30
  11. package/esm/methods/itkwasm-browser.js.map +1 -1
  12. package/esm/methods/itkwasm-node.d.ts +2 -1
  13. package/esm/methods/itkwasm-node.d.ts.map +1 -1
  14. package/esm/methods/itkwasm-node.js +30 -30
  15. package/esm/methods/itkwasm-node.js.map +1 -1
  16. package/esm/methods/itkwasm-shared.d.ts +3 -2
  17. package/esm/methods/itkwasm-shared.d.ts.map +1 -1
  18. package/esm/methods/itkwasm-shared.js +12 -2
  19. package/esm/methods/itkwasm-shared.js.map +1 -1
  20. package/esm/mod.d.ts +24 -23
  21. package/esm/mod.d.ts.map +1 -1
  22. package/esm/mod.js +22 -21
  23. package/esm/mod.js.map +1 -1
  24. package/esm/process/to_multiscales-shared.d.ts +16 -3
  25. package/esm/process/to_multiscales-shared.d.ts.map +1 -1
  26. package/esm/process/to_multiscales-shared.js +7 -2
  27. package/esm/process/to_multiscales-shared.js.map +1 -1
  28. package/esm/types/rfc4.d.ts +26 -0
  29. package/esm/types/rfc4.d.ts.map +1 -1
  30. package/esm/types/rfc4.js +84 -0
  31. package/esm/types/rfc4.js.map +1 -1
  32. package/esm/utils/codecs.d.ts +21 -21
  33. package/esm/utils/codecs.d.ts.map +1 -1
  34. package/esm/utils/codecs.js +12 -0
  35. package/esm/utils/codecs.js.map +1 -1
  36. package/esm/utils/compute_omero-shared.d.ts.map +1 -1
  37. package/esm/utils/compute_omero-shared.js +36 -19
  38. package/esm/utils/compute_omero-shared.js.map +1 -1
  39. package/esm/utils/compute_omero.js +52 -1
  40. package/esm/workers/omero_codec_worker.js +35 -15
  41. package/esm/workers/omero_codec_worker.js.map +1 -1
  42. package/package.json +1 -1
package/esm/methods/itkwasm-node.js CHANGED
@@ -11,9 +11,9 @@
11
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  */
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  import { downsampleBinShrinkNode as downsampleBinShrink, downsampleLabelImageNode as downsampleLabelImage, downsampleNode as downsample, } from "@itk-wasm/downsample";
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  import * as zarr from "zarrita";
14
- import { zarrGet, zarrSet } from "../utils/worker_pool.js";
15
- import { defaultCodecs } from "../utils/codecs.js";
16
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  import { NgffImage } from "../types/ngff_image.js";
15
+ import { defaultCodecs } from "../utils/codecs.js";
16
+ import { zarrGet, zarrSet } from "../utils/worker_pool.js";
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  import { dimScaleFactors, itkImageToZarr, MAX_VECTOR_COMPONENTS, nextScaleMetadata, SPATIAL_DIMS, updatePreviousDimFactors, zarrToItkImage, } from "./itkwasm-shared.js";
18
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  /**
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  * Compute chunk shape from configurable chunks option
@@ -41,7 +41,7 @@ function computeChunkShape(shape, chunks, dims, defaultChunk = 256) {
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  /**
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  * Perform Gaussian downsampling using ITK-Wasm (Node version)
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  */
44
- async function downsampleGaussian(image, dimFactors, spatialDims, chunks) {
44
+ async function downsampleGaussian(image, dimFactors, spatialDims, chunks, codecs) {
45
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  // Handle time dimension by processing each time slice independently
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  if (image.dims.includes("t")) {
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  const tDimIndex = image.dims.indexOf("t");
@@ -67,7 +67,7 @@ async function downsampleGaussian(image, dimFactors, spatialDims, chunks) {
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  chunk_shape: sliceChunkShape,
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  data_type: image.data.dtype,
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  fill_value: 0,
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- codecs: defaultCodecs(image.data.dtype),
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+ codecs: codecs ?? defaultCodecs(image.data.dtype),
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  });
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  const fullSelection = new Array(sliceShape.length).fill(null);
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  await zarrSet(sliceArray, fullSelection, sliceData);
@@ -84,7 +84,7 @@ async function downsampleGaussian(image, dimFactors, spatialDims, chunks) {
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  computedCallbacks: image.computedCallbacks,
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  });
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  // Recursively downsample this slice (without 't', so no infinite loop)
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- const downsampledSlice = await downsampleGaussian(sliceImage, dimFactors, spatialDims, sliceChunks);
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+ const downsampledSlice = await downsampleGaussian(sliceImage, dimFactors, spatialDims, sliceChunks, codecs);
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  downsampledSlices.push(downsampledSlice.data);
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  }
90
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  // Combine downsampled slices back into a single array with 't' dimension
@@ -106,7 +106,7 @@ async function downsampleGaussian(image, dimFactors, spatialDims, chunks) {
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  chunk_shape: computeChunkShape(combinedShape, chunks, image.dims),
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  data_type: image.data.dtype,
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  fill_value: 0,
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- codecs: defaultCodecs(image.data.dtype),
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+ codecs: codecs ?? defaultCodecs(image.data.dtype),
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  });
111
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  // Copy each downsampled slice into the combined array
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  for (let t = 0; t < tSize; t++) {
@@ -159,7 +159,7 @@ async function downsampleGaussian(image, dimFactors, spatialDims, chunks) {
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  chunk_shape: sliceChunkShape,
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  data_type: image.data.dtype,
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  fill_value: 0,
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- codecs: defaultCodecs(image.data.dtype),
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+ codecs: codecs ?? defaultCodecs(image.data.dtype),
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  });
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  const fullSelection = new Array(sliceShape.length).fill(null);
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  await zarrSet(sliceArray, fullSelection, sliceData);
@@ -176,7 +176,7 @@ async function downsampleGaussian(image, dimFactors, spatialDims, chunks) {
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  computedCallbacks: image.computedCallbacks,
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  });
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  // Recursively downsample this slice (without 'c', so no infinite loop)
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- const downsampledSlice = await downsampleGaussian(sliceImage, dimFactors, spatialDims, sliceChunks);
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+ const downsampledSlice = await downsampleGaussian(sliceImage, dimFactors, spatialDims, sliceChunks, codecs);
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  downsampledSlices.push(downsampledSlice.data);
181
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  }
182
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  // Combine downsampled slices back into a single array with 'c' dimension
@@ -198,7 +198,7 @@ async function downsampleGaussian(image, dimFactors, spatialDims, chunks) {
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  chunk_shape: computeChunkShape(combinedShape, chunks, image.dims),
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  data_type: image.data.dtype,
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  fill_value: 0,
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- codecs: defaultCodecs(image.data.dtype),
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+ codecs: codecs ?? defaultCodecs(image.data.dtype),
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  });
203
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  // Copy each downsampled slice into the combined array
204
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  for (let c = 0; c < cSize; c++) {
@@ -243,7 +243,7 @@ async function downsampleGaussian(image, dimFactors, spatialDims, chunks) {
243
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  // downsampled.size is in ITK order [x, y, z], reverse to get array order [z, y, x]
244
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  const reversedShape = [...downsampled.size].reverse();
245
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  const chunkShape = computeChunkShape(reversedShape, chunks, image.dims);
246
- const array = await itkImageToZarr(downsampled, store, "image", chunkShape, image.dims);
246
+ const array = await itkImageToZarr(downsampled, store, "image", chunkShape, image.dims, codecs);
247
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  return new NgffImage({
248
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  data: array,
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  dims: image.dims,
@@ -257,7 +257,7 @@ async function downsampleGaussian(image, dimFactors, spatialDims, chunks) {
257
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  /**
258
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  * Perform bin shrink downsampling using ITK-Wasm (Node version)
259
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  */
260
- async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks) {
260
+ async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks, codecs) {
261
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  // Handle time dimension by processing each time slice independently
262
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  if (image.dims.includes("t")) {
263
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  const tDimIndex = image.dims.indexOf("t");
@@ -283,7 +283,7 @@ async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks) {
283
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  chunk_shape: sliceChunkShape,
284
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  data_type: image.data.dtype,
285
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  fill_value: 0,
286
- codecs: defaultCodecs(image.data.dtype),
286
+ codecs: codecs ?? defaultCodecs(image.data.dtype),
287
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  });
288
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  const fullSelection = new Array(sliceShape.length).fill(null);
289
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  await zarrSet(sliceArray, fullSelection, sliceData);
@@ -300,7 +300,7 @@ async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks) {
300
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  computedCallbacks: image.computedCallbacks,
301
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  });
302
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  // Recursively downsample this slice
303
- const downsampledSlice = await downsampleBinShrinkImpl(sliceImage, dimFactors, spatialDims, sliceChunks);
303
+ const downsampledSlice = await downsampleBinShrinkImpl(sliceImage, dimFactors, spatialDims, sliceChunks, codecs);
304
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  downsampledSlices.push(downsampledSlice.data);
305
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  }
306
306
  // Combine downsampled slices back into a single array with 't' dimension
@@ -322,7 +322,7 @@ async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks) {
322
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  chunk_shape: computeChunkShape(combinedShape, chunks, image.dims),
323
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  data_type: image.data.dtype,
324
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  fill_value: 0,
325
- codecs: defaultCodecs(image.data.dtype),
325
+ codecs: codecs ?? defaultCodecs(image.data.dtype),
326
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  });
327
327
  // Copy each downsampled slice into the combined array
328
328
  for (let t = 0; t < tSize; t++) {
@@ -375,7 +375,7 @@ async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks) {
375
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  chunk_shape: sliceChunkShape,
376
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  data_type: image.data.dtype,
377
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  fill_value: 0,
378
- codecs: defaultCodecs(image.data.dtype),
378
+ codecs: codecs ?? defaultCodecs(image.data.dtype),
379
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  });
380
380
  const fullSelection = new Array(sliceShape.length).fill(null);
381
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  await zarrSet(sliceArray, fullSelection, sliceData);
@@ -392,7 +392,7 @@ async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks) {
392
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  computedCallbacks: image.computedCallbacks,
393
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  });
394
394
  // Recursively downsample this slice (without 'c', so no infinite loop)
395
- const downsampledSlice = await downsampleBinShrinkImpl(sliceImage, dimFactors, spatialDims, sliceChunks);
395
+ const downsampledSlice = await downsampleBinShrinkImpl(sliceImage, dimFactors, spatialDims, sliceChunks, codecs);
396
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  downsampledSlices.push(downsampledSlice.data);
397
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  }
398
398
  // Combine downsampled slices back into a single array with 'c' dimension
@@ -414,7 +414,7 @@ async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks) {
414
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  chunk_shape: computeChunkShape(combinedShape, chunks, image.dims),
415
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  data_type: image.data.dtype,
416
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  fill_value: 0,
417
- codecs: defaultCodecs(image.data.dtype),
417
+ codecs: codecs ?? defaultCodecs(image.data.dtype),
418
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  });
419
419
  // Copy each downsampled slice into the combined array
420
420
  for (let c = 0; c < cSize; c++) {
@@ -456,7 +456,7 @@ async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks) {
456
456
  // downsampled.size is in ITK order [x, y, z], reverse to get array order [z, y, x]
457
457
  const reversedShape = [...downsampled.size].reverse();
458
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  const chunkShape = computeChunkShape(reversedShape, chunks, image.dims);
459
- const array = await itkImageToZarr(downsampled, store, "image", chunkShape, image.dims);
459
+ const array = await itkImageToZarr(downsampled, store, "image", chunkShape, image.dims, codecs);
460
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  return new NgffImage({
461
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  data: array,
462
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  dims: image.dims,
@@ -470,7 +470,7 @@ async function downsampleBinShrinkImpl(image, dimFactors, spatialDims, chunks) {
470
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  /**
471
471
  * Perform label image downsampling using ITK-Wasm (Node version)
472
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  */
473
- async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks) {
473
+ async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks, codecs) {
474
474
  // Handle time dimension by processing each time slice independently
475
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  if (image.dims.includes("t")) {
476
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  const tDimIndex = image.dims.indexOf("t");
@@ -496,7 +496,7 @@ async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks)
496
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  chunk_shape: sliceChunkShape,
497
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  data_type: image.data.dtype,
498
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  fill_value: 0,
499
- codecs: defaultCodecs(image.data.dtype),
499
+ codecs: codecs ?? defaultCodecs(image.data.dtype),
500
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  });
501
501
  const fullSelection = new Array(sliceShape.length).fill(null);
502
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  await zarrSet(sliceArray, fullSelection, sliceData);
@@ -513,7 +513,7 @@ async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks)
513
513
  computedCallbacks: image.computedCallbacks,
514
514
  });
515
515
  // Recursively downsample this slice
516
- const downsampledSlice = await downsampleLabelImageImpl(sliceImage, dimFactors, spatialDims, sliceChunks);
516
+ const downsampledSlice = await downsampleLabelImageImpl(sliceImage, dimFactors, spatialDims, sliceChunks, codecs);
517
517
  downsampledSlices.push(downsampledSlice.data);
518
518
  }
519
519
  // Combine downsampled slices back into a single array with 't' dimension
@@ -535,7 +535,7 @@ async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks)
535
535
  chunk_shape: computeChunkShape(combinedShape, chunks, image.dims),
536
536
  data_type: image.data.dtype,
537
537
  fill_value: 0,
538
- codecs: defaultCodecs(image.data.dtype),
538
+ codecs: codecs ?? defaultCodecs(image.data.dtype),
539
539
  });
540
540
  // Copy each downsampled slice into the combined array
541
541
  for (let t = 0; t < tSize; t++) {
@@ -588,7 +588,7 @@ async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks)
588
588
  chunk_shape: sliceChunkShape,
589
589
  data_type: image.data.dtype,
590
590
  fill_value: 0,
591
- codecs: defaultCodecs(image.data.dtype),
591
+ codecs: codecs ?? defaultCodecs(image.data.dtype),
592
592
  });
593
593
  const fullSelection = new Array(sliceShape.length).fill(null);
594
594
  await zarrSet(sliceArray, fullSelection, sliceData);
@@ -605,7 +605,7 @@ async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks)
605
605
  computedCallbacks: image.computedCallbacks,
606
606
  });
607
607
  // Recursively downsample this slice (without 'c', so no infinite loop)
608
- const downsampledSlice = await downsampleLabelImageImpl(sliceImage, dimFactors, spatialDims, sliceChunks);
608
+ const downsampledSlice = await downsampleLabelImageImpl(sliceImage, dimFactors, spatialDims, sliceChunks, codecs);
609
609
  downsampledSlices.push(downsampledSlice.data);
610
610
  }
611
611
  // Combine downsampled slices back into a single array with 'c' dimension
@@ -627,7 +627,7 @@ async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks)
627
627
  chunk_shape: computeChunkShape(combinedShape, chunks, image.dims),
628
628
  data_type: image.data.dtype,
629
629
  fill_value: 0,
630
- codecs: defaultCodecs(image.data.dtype),
630
+ codecs: codecs ?? defaultCodecs(image.data.dtype),
631
631
  });
632
632
  // Copy each downsampled slice into the combined array
633
633
  for (let c = 0; c < cSize; c++) {
@@ -675,7 +675,7 @@ async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks)
675
675
  // downsampled.size is in ITK order [x, y, z], reverse to get array order [z, y, x]
676
676
  const reversedShape = [...downsampled.size].reverse();
677
677
  const chunkShape = computeChunkShape(reversedShape, chunks, image.dims);
678
- const array = await itkImageToZarr(downsampled, store, "image", chunkShape, image.dims);
678
+ const array = await itkImageToZarr(downsampled, store, "image", chunkShape, image.dims, codecs);
679
679
  return new NgffImage({
680
680
  data: array,
681
681
  dims: image.dims,
@@ -689,7 +689,7 @@ async function downsampleLabelImageImpl(image, dimFactors, spatialDims, chunks)
689
689
  /**
690
690
  * Main downsampling function for ITK-Wasm (Node version)
691
691
  */
692
- export async function downsampleItkWasm(ngffImage, scaleFactors, smoothing, chunks) {
692
+ export async function downsampleItkWasm(ngffImage, scaleFactors, smoothing, chunks, codecs) {
693
693
  const multiscales = [ngffImage];
694
694
  const dims = ngffImage.dims;
695
695
  const spatialDims = dims.filter((dim) => SPATIAL_DIMS.includes(dim));
@@ -753,13 +753,13 @@ export async function downsampleItkWasm(ngffImage, scaleFactors, smoothing, chun
753
753
  }
754
754
  let downsampled;
755
755
  if (smoothing === "gaussian") {
756
- downsampled = await downsampleGaussian(sourceImage, sourceDimFactors, spatialDims, chunks);
756
+ downsampled = await downsampleGaussian(sourceImage, sourceDimFactors, spatialDims, chunks, codecs);
757
757
  }
758
758
  else if (smoothing === "bin_shrink") {
759
- downsampled = await downsampleBinShrinkImpl(sourceImage, sourceDimFactors, spatialDims, chunks);
759
+ downsampled = await downsampleBinShrinkImpl(sourceImage, sourceDimFactors, spatialDims, chunks, codecs);
760
760
  }
761
761
  else if (smoothing === "label_image") {
762
- downsampled = await downsampleLabelImageImpl(sourceImage, sourceDimFactors, spatialDims, chunks);
762
+ downsampled = await downsampleLabelImageImpl(sourceImage, sourceDimFactors, spatialDims, chunks, codecs);
763
763
  }
764
764
  else {
765
765
  throw new Error(`Unknown smoothing method: ${smoothing}`);
package/esm/methods/itkwasm-node.js.map CHANGED
@@ -1 +1 @@
1
- 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package/esm/methods/itkwasm-shared.d.ts CHANGED
@@ -4,7 +4,8 @@
4
4
  */
5
5
  import type { Image } from "itk-wasm";
6
6
  import * as zarr from "zarrita";
7
- import { NgffImage } from "../types/ngff_image.js";
7
+ import type { NgffImage } from "../types/ngff_image.js";
8
+ import type { ZarrCodec } from "../utils/codecs.js";
8
9
  export declare const SPATIAL_DIMS: string[];
9
10
  /**
10
11
  * Maximum number of components to use vector mode for itkwasm downsampling.
@@ -70,5 +71,5 @@ export declare function zarrToItkImage(array: zarr.Array<zarr.DataType, zarr.Rea
70
71
  * @param chunkShape - The chunk shape (in spatial dimension order, will be adjusted for components)
71
72
  * @param targetDims - The target dimension order (e.g., ["c", "z", "y", "x"])
72
73
  */
73
- export declare function itkImageToZarr(itkImage: Image, store: Map<string, Uint8Array>, path: string, chunkShape: number[], targetDims?: string[]): Promise<zarr.Array<zarr.DataType, zarr.Readable>>;
74
+ export declare function itkImageToZarr(itkImage: Image, store: Map<string, Uint8Array>, path: string, chunkShape: number[], targetDims?: string[], codecs?: ZarrCodec[]): Promise<zarr.Array<zarr.DataType, zarr.Readable>>;
74
75
  //# sourceMappingURL=itkwasm-shared.d.ts.map
package/esm/methods/itkwasm-shared.d.ts.map CHANGED
@@ -1 +1 @@
1
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package/esm/methods/itkwasm-shared.js CHANGED
@@ -360,7 +360,7 @@ export async function zarrToItkImage(array, dims, isVector = false) {
360
360
  * @param chunkShape - The chunk shape (in spatial dimension order, will be adjusted for components)
361
361
  * @param targetDims - The target dimension order (e.g., ["c", "z", "y", "x"])
362
362
  */
363
- export async function itkImageToZarr(itkImage, store, path, chunkShape, targetDims) {
363
+ export async function itkImageToZarr(itkImage, store, path, chunkShape, targetDims, codecs) {
364
364
  const root = zarr.root(store);
365
365
  if (!itkImage.data) {
366
366
  throw new Error("ITK image data is null or undefined");
@@ -478,12 +478,22 @@ export async function itkImageToZarr(itkImage, store, path, chunkShape, targetDi
478
478
  if (zarrChunkShape.length !== zarrShape.length) {
479
479
  throw new Error(`chunkShape length (${zarrChunkShape.length}) must match shape length (${zarrShape.length})`);
480
480
  }
481
+ // Validate codecs if provided
482
+ if (codecs !== undefined) {
483
+ if (codecs.length === 0) {
484
+ throw new Error("codecs array must not be empty; at minimum, include the required 'bytes' array-to-bytes codec");
485
+ }
486
+ const hasBytesCodec = codecs.some((codec) => codec.name === "bytes");
487
+ if (!hasBytesCodec) {
488
+ throw new Error("codecs array must include the required 'bytes' array-to-bytes codec");
489
+ }
490
+ }
481
491
  const array = await zarr.create(root.resolve(path), {
482
492
  shape: zarrShape,
483
493
  chunk_shape: zarrChunkShape,
484
494
  data_type: dataType,
485
495
  fill_value: 0,
486
- codecs: defaultCodecs(dataType),
496
+ codecs: codecs ?? defaultCodecs(dataType),
487
497
  });
488
498
  // Write data - preserve the actual data type, don't cast to Float32Array
489
499
  // Shape and stride should match the ITK image size order
package/esm/methods/itkwasm-shared.js.map CHANGED
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package/esm/mod.d.ts CHANGED
@@ -1,32 +1,33 @@
1
- export * from "./types/units.js";
2
- export * from "./types/methods.js";
1
+ export * from "./io/from_ngff_zarr.js";
2
+ export * from "./io/hcs.js";
3
+ export * from "./io/itk_image_to_ngff_image.js";
4
+ export * from "./io/ngff_image_to_itk_image.js";
5
+ export type { MemoryStoreToZipOptions } from "./io/rfc9_zip.js";
6
+ export { getZipFileCompressionMethod, getZipFileList, isOzxPath, memoryStoreToZip, orderFilesForRfc9, readOzxJsonFirst, readOzxVersion, } from "./io/rfc9_zip.js";
7
+ export * from "./io/to_ngff_zarr.js";
8
+ export * from "./process/to_multiscales-node.js";
9
+ export * from "./schemas/methods.js";
10
+ export * from "./schemas/multiscales.js";
11
+ export * from "./schemas/ngff_image.js";
12
+ export * from "./schemas/units.js";
13
+ export * from "./schemas/zarr_metadata.js";
3
14
  export * from "./types/array_interface.js";
4
- export * from "./types/zarr_metadata.js";
5
- export * from "./types/ngff_image.js";
15
+ export * from "./types/hcs.js";
16
+ export * from "./types/methods.js";
6
17
  export * from "./types/multiscales.js";
18
+ export * from "./types/ngff_image.js";
7
19
  export * from "./types/rfc4.js";
8
- export * from "./types/hcs.js";
9
20
  export * from "./types/supported_versions.js";
10
- export * from "./schemas/units.js";
11
- export * from "./schemas/methods.js";
12
- export * from "./schemas/zarr_metadata.js";
13
- export * from "./schemas/ngff_image.js";
14
- export * from "./schemas/multiscales.js";
15
- export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/validation.js";
21
+ export * from "./types/units.js";
22
+ export * from "./types/zarr_metadata.js";
23
+ export type { ZarrCodec } from "./utils/codecs.js";
24
+ export { bytesOnlyCodecs, defaultCodecs } from "./utils/codecs.js";
25
+ export type { ComputeOmeroFromMultiscalesOptions, ComputeOmeroOptions, } from "./utils/compute_omero.js";
26
+ export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
16
27
  export { createAxis, createDataset, createMetadata, createMultiscales, createNgffImage, } from "./utils/factory.js";
28
+ export { fromZarrAttrsV04, fromZarrAttrsV05 } from "./utils/from_zarr_attrs.js";
17
29
  export { getMethodMetadata } from "./utils/method_metadata.js";
18
30
  export { detectVersion, extractMethodMetadata, parseOmero, } from "./utils/parse_metadata.js";
19
- export { computeOmeroFromMultiscales, computeOmeroFromNgffImage, getDefaultColors, GLASBEY_COLORS, terminateOmeroWorkerPool, } from "./utils/compute_omero.js";
20
- export type { ComputeOmeroFromMultiscalesOptions, ComputeOmeroOptions, } from "./utils/compute_omero.js";
21
- export { fromZarrAttrsV04, fromZarrAttrsV05 } from "./utils/from_zarr_attrs.js";
31
+ export { isValidDimension, isValidUnit, validateMetadata, } from "./utils/validation.js";
22
32
  export { terminateWorkerPool, zarrGet, zarrSet } from "./utils/worker_pool.js";
23
- export * from "./io/from_ngff_zarr.js";
24
- export * from "./io/to_ngff_zarr.js";
25
- export * from "./process/to_multiscales-node.js";
26
- export type { MemoryStore } from "./io/from_ngff_zarr.js";
27
- export * from "./io/itk_image_to_ngff_image.js";
28
- export * from "./io/ngff_image_to_itk_image.js";
29
- export * from "./io/hcs.js";
30
- export { getZipFileCompressionMethod, getZipFileList, isOzxPath, memoryStoreToZip, orderFilesForRfc9, readOzxJsonFirst, readOzxVersion, } from "./io/rfc9_zip.js";
31
- export type { MemoryStoreToZipOptions } from "./io/rfc9_zip.js";
32
33
  //# sourceMappingURL=mod.d.ts.map
package/esm/mod.d.ts.map CHANGED
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