@fideus-labs/ngff-zarr 0.0.1 → 0.2.0

package/esm/schemas/units.d.ts

@@ -1,9 +1,74 @@
 import { z } from "zod";
-export declare const SupportedDimsSchema: z.ZodTypeAny;
-export declare const SpatialDimsSchema: z.ZodTypeAny;
-export declare const AxesTypeSchema: z.ZodTypeAny;
-export declare const SpaceUnitsSchema: z.ZodTypeAny;
-export declare const TimeUnitsSchema: z.ZodTypeAny;
+export declare const SupportedDimsSchema: z.ZodEnum<{
+    c: "c";
+    x: "x";
+    y: "y";
+    z: "z";
+    t: "t";
+}>;
+export declare const SpatialDimsSchema: z.ZodEnum<{
+    x: "x";
+    y: "y";
+    z: "z";
+}>;
+export declare const AxesTypeSchema: z.ZodEnum<{
+    time: "time";
+    space: "space";
+    channel: "channel";
+}>;
+export declare const SpaceUnitsSchema: z.ZodEnum<{
+    angstrom: "angstrom";
+    attometer: "attometer";
+    centimeter: "centimeter";
+    decimeter: "decimeter";
+    exameter: "exameter";
+    femtometer: "femtometer";
+    foot: "foot";
+    gigameter: "gigameter";
+    hectometer: "hectometer";
+    inch: "inch";
+    kilometer: "kilometer";
+    megameter: "megameter";
+    meter: "meter";
+    micrometer: "micrometer";
+    mile: "mile";
+    millimeter: "millimeter";
+    nanometer: "nanometer";
+    parsec: "parsec";
+    petameter: "petameter";
+    picometer: "picometer";
+    terameter: "terameter";
+    yard: "yard";
+    yoctometer: "yoctometer";
+    yottameter: "yottameter";
+    zeptometer: "zeptometer";
+    zettameter: "zettameter";
+}>;
+export declare const TimeUnitsSchema: z.ZodEnum<{
+    attosecond: "attosecond";
+    centisecond: "centisecond";
+    day: "day";
+    decisecond: "decisecond";
+    exasecond: "exasecond";
+    femtosecond: "femtosecond";
+    gigasecond: "gigasecond";
+    hectosecond: "hectosecond";
+    hour: "hour";
+    kilosecond: "kilosecond";
+    megasecond: "megasecond";
+    microsecond: "microsecond";
+    millisecond: "millisecond";
+    minute: "minute";
+    nanosecond: "nanosecond";
+    petasecond: "petasecond";
+    picosecond: "picosecond";
+    second: "second";
+    terasecond: "terasecond";
+    yoctosecond: "yoctosecond";
+    yottasecond: "yottasecond";
+    zeptosecond: "zeptosecond";
+    zettasecond: "zettasecond";
+}>;
 export declare const UnitsSchema: z.ZodUnion<[
     typeof SpaceUnitsSchema,
     typeof TimeUnitsSchema

package/esm/schemas/units.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"units.d.ts","sourceRoot":"","sources":["../../src/schemas/units.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AASxB,eAAO,MAAM,mBAAmB,EAAE,CAAC,CAAC,UAMlC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,CAAC,CAAC,UAAoC,CAAC;AAEvE,eAAO,MAAM,cAAc,EAAE,CAAC,CAAC,UAI7B,CAAC;AAEH,eAAO,MAAM,gBAAgB,EAAE,CAAC,CAAC,UA2B/B,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,CAAC,CAAC,UAwB9B,CAAC;AAEH,eAAO,MAAM,WAAW,EAAE,CAAC,CAAC,QAAQ,CAClC;IAAC,OAAO,gBAAgB;IAAE,OAAO,eAAe;CAAC,CACH,CAAC;AAEjD,eAAO,MAAM,kBAAkB,EAAE,CAAC,CAAC,UAKhC,CAAC;AAEJ,eAAO,MAAM,aAAa,EAAE,CAAC,CAAC,UAM3B,CAAC"}
+{"version":3,"file":"units.d.ts","sourceRoot":"","sources":["../../src/schemas/units.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AASxB,eAAO,MAAM,mBAAmB,EAAE,CAAC,CAAC,OAAO,CAAC;IAC1C,CAAC,EAAE,GAAG,CAAC;IACP,CAAC,EAAE,GAAG,CAAC;IACP,CAAC,EAAE,GAAG,CAAC;IACP,CAAC,EAAE,GAAG,CAAC;IACP,CAAC,EAAE,GAAG,CAAC;CACR,CAAqC,CAAC;AAEvC,eAAO,MAAM,iBAAiB,EAAE,CAAC,CAAC,OAAO,CAAC;IACxC,CAAC,EAAE,GAAG,CAAC;IACP,CAAC,EAAE,GAAG,CAAC;IACP,CAAC,EAAE,GAAG,CAAC;CACR,CAA2B,CAAC;AAE7B,eAAO,MAAM,cAAc,EAAE,CAAC,CAAC,OAAO,CAAC;IACrC,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,OAAO,CAAC;IACf,OAAO,EAAE,SAAS,CAAC;CACpB,CAAwC,CAAC;AAE1C,eAAO,MAAM,gBAAgB,EAAE,CAAC,CAAC,OAAO,CAAC;IACvC,QAAQ,EAAE,UAAU,CAAC;IACrB,SAAS,EAAE,WAAW,CAAC;IACvB,UAAU,EAAE,YAAY,CAAC;IACzB,SAAS,EAAE,WAAW,CAAC;IACvB,QAAQ,EAAE,UAAU,CAAC;IACrB,UAAU,EAAE,YAAY,CAAC;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,WAAW,CAAC;IACvB,UAAU,EAAE,YAAY,CAAC;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,WAAW,CAAC;IACvB,SAAS,EAAE,WAAW,CAAC;IACvB,KAAK,EAAE,OAAO,CAAC;IACf,UAAU,EAAE,YAAY,CAAC;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,YAAY,CAAC;IACzB,SAAS,EAAE,WAAW,CAAC;IACvB,MAAM,EAAE,QAAQ,CAAC;IACjB,SAAS,EAAE,WAAW,CAAC;IACvB,SAAS,EAAE,WAAW,CAAC;IACvB,SAAS,EAAE,WAAW,CAAC;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,YAAY,CAAC;IACzB,UAAU,EAAE,YAAY,CAAC;IACzB,UAAU,EAAE,YAAY,CAAC;IACzB,UAAU,EAAE,YAAY,CAAC;CAC1B,CA2BC,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,CAAC,CAAC,OAAO,CAAC;IACtC,UAAU,EAAE,YAAY,CAAC;IACzB,WAAW,EAAE,aAAa,CAAC;IAC3B,GAAG,EAAE,KAAK,CAAC;IACX,UAAU,EAAE,YAAY,CAAC;IACzB,SAAS,EAAE,WAAW,CAAC;IACvB,WAAW,EAAE,aAAa,CAAC;IAC3B,UAAU,EAAE,YAAY,CAAC;IACzB,WAAW,EAAE,aAAa,CAAC;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,EAAE,YAAY,CAAC;IACzB,UAAU,EAAE,YAAY,CAAC;IACzB,WAAW,EAAE,aAAa,CAAC;IAC3B,WAAW,EAAE,aAAa,CAAC;IAC3B,MAAM,EAAE,QAAQ,CAAC;IACjB,UAAU,EAAE,YAAY,CAAC;IACzB,UAAU,EAAE,YAAY,CAAC;IACzB,UAAU,EAAE,YAAY,CAAC;IACzB,MAAM,EAAE,QAAQ,CAAC;IACjB,UAAU,EAAE,YAAY,CAAC;IACzB,WAAW,EAAE,aAAa,CAAC;IAC3B,WAAW,EAAE,aAAa,CAAC;IAC3B,WAAW,EAAE,aAAa,CAAC;IAC3B,WAAW,EAAE,aAAa,CAAC;CAC5B,CAwBC,CAAC;AAEH,eAAO,MAAM,WAAW,EAAE,CAAC,CAAC,QAAQ,CAClC;IAAC,OAAO,gBAAgB;IAAE,OAAO,eAAe;CAAC,CACH,CAAC;AAEjD,eAAO,MAAM,kBAAkB,EAAE,CAAC,CAAC,UAKhC,CAAC;AAEJ,eAAO,MAAM,aAAa,EAAE,CAAC,CAAC,UAM3B,CAAC"}

package/esm/schemas/units.js

@@ -1,18 +1,10 @@
+// SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
+// SPDX-License-Identifier: MIT
 import { z } from "zod";
 import { spaceUnits, supportedDims, timeUnits, } from "../types/units.js";
-export const SupportedDimsSchema = z.enum([
-    "c",
-    "x",
-    "y",
-    "z",
-    "t",
-]);
+export const SupportedDimsSchema = z.enum(["c", "x", "y", "z", "t"]);
 export const SpatialDimsSchema = z.enum(["x", "y", "z"]);
-export const AxesTypeSchema = z.enum([
-    "time",
-    "space",
-    "channel",
-]);
+export const AxesTypeSchema = z.enum(["time", "space", "channel"]);
 export const SpaceUnitsSchema = z.enum([
     "angstrom",
     "attometer",

package/esm/schemas/zarr_metadata.d.ts

@@ -1,9 +1,11 @@
 import { z } from "zod";
 import { AxesTypeSchema, SupportedDimsSchema, UnitsSchema } from "./units.js";
+import { AnatomicalOrientationSchema } from "./rfc4.js";
 export declare const AxisSchema: z.ZodObject<{
     name: typeof SupportedDimsSchema;
     type: typeof AxesTypeSchema;
     unit: z.ZodOptional<typeof UnitsSchema>;
+    orientation: z.ZodOptional<typeof AnatomicalOrientationSchema>;
 }>;
 export declare const IdentitySchema: z.ZodObject<{
     type: z.ZodLiteral<"identity">;
@@ -16,10 +18,7 @@ export declare const TranslationSchema: z.ZodObject<{
     translation: z.ZodArray<z.ZodNumber>;
     type: z.ZodLiteral<"translation">;
 }>;
-export declare const TransformSchema: z.ZodUnion<[
-    typeof ScaleSchema,
-    typeof TranslationSchema
-]>;
+export declare const TransformSchema: z.ZodType<unknown>;
 export declare const DatasetSchema: z.ZodObject<{
     path: z.ZodString;
     coordinateTransformations: z.ZodArray<typeof TransformSchema>;
@@ -38,6 +37,11 @@ export declare const OmeroChannelSchema: z.ZodObject<{
 export declare const OmeroSchema: z.ZodObject<{
     channels: z.ZodArray<typeof OmeroChannelSchema>;
 }>;
+export declare const MethodMetadataSchema: z.ZodType<{
+    description: string;
+    method: string;
+    version: string;
+}>;
 export declare const MetadataSchema: z.ZodObject<{
     axes: z.ZodArray<typeof AxisSchema>;
     datasets: z.ZodArray<typeof DatasetSchema>;
@@ -45,5 +49,7 @@ export declare const MetadataSchema: z.ZodObject<{
     omero: z.ZodOptional<typeof OmeroSchema>;
     name: z.ZodDefault<z.ZodString>;
     version: z.ZodDefault<z.ZodString>;
+    type: z.ZodOptional<z.ZodString>;
+    metadata: z.ZodOptional<typeof MethodMetadataSchema>;
 }>;
 //# sourceMappingURL=zarr_metadata.d.ts.map

package/esm/schemas/zarr_metadata.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"zarr_metadata.d.ts","sourceRoot":"","sources":["../../src/schemas/zarr_metadata.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,cAAc,EAAE,mBAAmB,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAE9E,eAAO,MAAM,UAAU,EAAE,CAAC,CAAC,SAAS,CAAC;IACnC,IAAI,EAAE,OAAO,mBAAmB,CAAC;IACjC,IAAI,EAAE,OAAO,cAAc,CAAC;IAC5B,IAAI,EAAE,CAAC,CAAC,WAAW,CAAC,OAAO,WAAW,CAAC,CAAC;CACzC,CAIC,CAAC;AAEH,eAAO,MAAM,cAAc,EAAE,CAAC,CAAC,SAAS,CAAC;IACvC,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC;CAChC,CAEC,CAAC;AAEH,eAAO,MAAM,WAAW,EAAE,CAAC,CAAC,SAAS,CAAC;IACpC,KAAK,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAC/B,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC;CAC7B,CAGC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,CAAC,CAAC,SAAS,CAAC;IAC1C,WAAW,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IACrC,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,aAAa,CAAC,CAAC;CACnC,CAGC,CAAC;AAEH,eAAO,MAAM,eAAe,EAAE,CAAC,CAAC,QAAQ,CACtC;IAAC,OAAO,WAAW;IAAE,OAAO,iBAAiB;CAAC,CACH,CAAC;AAE9C,eAAO,MAAM,aAAa,EAAE,CAAC,CAAC,SAAS,CAAC;IACtC,IAAI,EAAE,CAAC,CAAC,SAAS,CAAC;IAClB,yBAAyB,EAAE,CAAC,CAAC,QAAQ,CAAC,OAAO,eAAe,CAAC,CAAC;CAC/D,CAGC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,CAAC,CAAC,SAAS,CAAC;IAC1C,GAAG,EAAE,CAAC,CAAC,SAAS,CAAC;IACjB,GAAG,EAAE,CAAC,CAAC,SAAS,CAAC;IACjB,KAAK,EAAE,CAAC,CAAC,SAAS,CAAC;IACnB,GAAG,EAAE,CAAC,CAAC,SAAS,CAAC;CAClB,CAKC,CAAC;AAEH,eAAO,MAAM,kBAAkB,EAAE,CAAC,CAAC,SAAS,CAAC;IAC3C,KAAK,EAAE,CAAC,CAAC,SAAS,CAAC;IACnB,MAAM,EAAE,OAAO,iBAAiB,CAAC;IACjC,KAAK,EAAE,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;CACnC,CAMC,CAAC;AAEH,eAAO,MAAM,WAAW,EAAE,CAAC,CAAC,SAAS,CAAC;IACpC,QAAQ,EAAE,CAAC,CAAC,QAAQ,CAAC,OAAO,kBAAkB,CAAC,CAAC;CACjD,CAEC,CAAC;AAEH,eAAO,MAAM,cAAc,EAAE,CAAC,CAAC,SAAS,CAAC;IACvC,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAC,OAAO,UAAU,CAAC,CAAC;IACpC,QAAQ,EAAE,CAAC,CAAC,QAAQ,CAAC,OAAO,aAAa,CAAC,CAAC;IAC3C,yBAAyB,EAAE,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,eAAe,CAAC,CAAC,CAAC;IAC7E,KAAK,EAAE,CAAC,CAAC,WAAW,CAAC,OAAO,WAAW,CAAC,CAAC;IACzC,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAChC,OAAO,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;CACpC,CAOC,CAAC"}
+{"version":3,"file":"zarr_metadata.d.ts","sourceRoot":"","sources":["../../src/schemas/zarr_metadata.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,cAAc,EAAE,mBAAmB,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAC9E,OAAO,EAAE,2BAA2B,EAAE,MAAM,WAAW,CAAC;AAIxD,eAAO,MAAM,UAAU,EAAE,CAAC,CAAC,SAAS,CAAC;IACnC,IAAI,EAAE,OAAO,mBAAmB,CAAC;IACjC,IAAI,EAAE,OAAO,cAAc,CAAC;IAC5B,IAAI,EAAE,CAAC,CAAC,WAAW,CAAC,OAAO,WAAW,CAAC,CAAC;IACxC,WAAW,EAAE,CAAC,CAAC,WAAW,CAAC,OAAO,2BAA2B,CAAC,CAAC;CAChE,CAMC,CAAC;AAGH,eAAO,MAAM,cAAc,EAAE,CAAC,CAAC,SAAS,CAAC;IACvC,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,UAAU,CAAC,CAAC;CAChC,CAEC,CAAC;AAEH,eAAO,MAAM,WAAW,EAAE,CAAC,CAAC,SAAS,CAAC;IACpC,KAAK,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAC/B,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC;CAC7B,CAGC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,CAAC,CAAC,SAAS,CAAC;IAC1C,WAAW,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IACrC,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,aAAa,CAAC,CAAC;CACnC,CAGC,CAAC;AAGH,eAAO,MAAM,eAAe,EAAE,CAAC,CAAC,OAAO,CAAC,OAAO,CAK7C,CAAC;AAEH,eAAO,MAAM,aAAa,EAAE,CAAC,CAAC,SAAS,CAAC;IACtC,IAAI,EAAE,CAAC,CAAC,SAAS,CAAC;IAClB,yBAAyB,EAAE,CAAC,CAAC,QAAQ,CAAC,OAAO,eAAe,CAAC,CAAC;CAC/D,CAGC,CAAC;AAEH,eAAO,MAAM,iBAAiB,EAAE,CAAC,CAAC,SAAS,CAAC;IAC1C,GAAG,EAAE,CAAC,CAAC,SAAS,CAAC;IACjB,GAAG,EAAE,CAAC,CAAC,SAAS,CAAC;IACjB,KAAK,EAAE,CAAC,CAAC,SAAS,CAAC;IACnB,GAAG,EAAE,CAAC,CAAC,SAAS,CAAC;CAClB,CAKC,CAAC;AAEH,eAAO,MAAM,kBAAkB,EAAE,CAAC,CAAC,SAAS,CAAC;IAC3C,KAAK,EAAE,CAAC,CAAC,SAAS,CAAC;IACnB,MAAM,EAAE,OAAO,iBAAiB,CAAC;IACjC,KAAK,EAAE,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;CACnC,CAMC,CAAC;AAEH,eAAO,MAAM,WAAW,EAAE,CAAC,CAAC,SAAS,CAAC;IACpC,QAAQ,EAAE,CAAC,CAAC,QAAQ,CAAC,OAAO,kBAAkB,CAAC,CAAC;CACjD,CAEC,CAAC;AAEH,eAAO,MAAM,oBAAoB,EAAE,CAAC,CAAC,OAAO,CAAC;IAC3C,WAAW,EAAE,MAAM,CAAC;IACpB,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;CACjB,CAIC,CAAC;AAEH,eAAO,MAAM,cAAc,EAAE,CAAC,CAAC,SAAS,CAAC;IACvC,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAC,OAAO,UAAU,CAAC,CAAC;IACpC,QAAQ,EAAE,CAAC,CAAC,QAAQ,CAAC,OAAO,aAAa,CAAC,CAAC;IAC3C,yBAAyB,EAAE,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,eAAe,CAAC,CAAC,CAAC;IAC7E,KAAK,EAAE,CAAC,CAAC,WAAW,CAAC,OAAO,WAAW,CAAC,CAAC;IACzC,IAAI,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAChC,OAAO,EAAE,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IACnC,IAAI,EAAE,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IACjC,QAAQ,EAAE,CAAC,CAAC,WAAW,CAAC,OAAO,oBAAoB,CAAC,CAAC;CACtD,CASC,CAAC"}

package/esm/schemas/zarr_metadata.js

@@ -1,10 +1,18 @@
+// SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
+// SPDX-License-Identifier: MIT
 import { z } from "zod";
 import { AxesTypeSchema, SupportedDimsSchema, UnitsSchema } from "./units.js";
+import { AnatomicalOrientationSchema } from "./rfc4.js";
+import { CoordinateTransformationSchema } from "./coordinate_systems.js";
+// Enhanced Axis schema that supports RFC4 orientation
 export const AxisSchema = z.object({
     name: SupportedDimsSchema,
     type: AxesTypeSchema,
     unit: UnitsSchema.optional(),
+    // RFC4: Optional orientation for space axes
+    orientation: AnatomicalOrientationSchema.optional(),
 });
+// Legacy schemas for backward compatibility
 export const IdentitySchema = z.object({
     type: z.literal("identity"),
 });
@@ -16,7 +24,13 @@ export const TranslationSchema = z.object({
     translation: z.array(z.number()),
     type: z.literal("translation"),
 });
-export const TransformSchema = z.union([ScaleSchema, TranslationSchema]);
+// Enhanced transform schema that includes all RFC5 transformations
+export const TransformSchema = z.union([
+    ScaleSchema,
+    TranslationSchema,
+    IdentitySchema,
+    CoordinateTransformationSchema,
+]);
 export const DatasetSchema = z.object({
     path: z.string(),
     coordinateTransformations: z.array(TransformSchema),
@@ -37,6 +51,11 @@ export const OmeroChannelSchema = z.object({
 export const OmeroSchema = z.object({
     channels: z.array(OmeroChannelSchema),
 });
+export const MethodMetadataSchema = z.object({
+    description: z.string(),
+    method: z.string(),
+    version: z.string(),
+});
 export const MetadataSchema = z.object({
     axes: z.array(AxisSchema),
     datasets: z.array(DatasetSchema),
@@ -44,4 +63,6 @@ export const MetadataSchema = z.object({
     omero: OmeroSchema.optional(),
     name: z.string().default("image"),
     version: z.string().default("0.4"),
+    type: z.string().optional(),
+    metadata: MethodMetadataSchema.optional(),
 });

package/esm/types/array_interface.d.ts

@@ -0,0 +1,7 @@
+export interface ArrayLike {
+    readonly shape: number[];
+    readonly dtype: string;
+    readonly chunks: number[];
+    readonly path?: string;
+}
+//# sourceMappingURL=array_interface.d.ts.map

package/esm/types/array_interface.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"array_interface.d.ts","sourceRoot":"","sources":["../../src/types/array_interface.ts"],"names":[],"mappings":"AAGA,MAAM,WAAW,SAAS;IACxB,QAAQ,CAAC,KAAK,EAAE,MAAM,EAAE,CAAC;IACzB,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC;IAC1B,QAAQ,CAAC,IAAI,CAAC,EAAE,MAAM,CAAC;CACxB"}

package/esm/types/array_interface.js

@@ -0,0 +1 @@
+export {};

package/esm/types/hcs.d.ts

@@ -0,0 +1,70 @@
+import type { Multiscales } from "./multiscales.js";
+import type { PlateAcquisition, PlateColumn, PlateRow, PlateWell, WellImage } from "../schemas/index.js";
+export interface LRUCacheOptions {
+    maxSize: number;
+}
+export declare class LRUCache<K, V> {
+    private cache;
+    private readonly maxSize;
+    constructor(options: LRUCacheOptions);
+    get(key: K): V | undefined;
+    set(key: K, value: V): void;
+    has(key: K): boolean;
+    clear(): void;
+}
+export interface PlateMetadata {
+    columns: PlateColumn[];
+    rows: PlateRow[];
+    wells: PlateWell[];
+    version: string;
+    acquisitions?: PlateAcquisition[] | undefined;
+    field_count?: number | undefined;
+    name?: string | undefined;
+}
+export interface WellMetadata {
+    images: WellImage[];
+    version: string;
+}
+export interface HCSPlateOptions {
+    store: string | object;
+    metadata: PlateMetadata;
+    wellCacheSize?: number | undefined;
+    imageCacheSize?: number | undefined;
+}
+export interface HCSWellOptions {
+    store: string | object;
+    wellPath: string;
+    plateMetadata: PlateWell;
+    wellGroupMetadata: WellMetadata;
+    imageCacheSize?: number | undefined;
+}
+export declare class HCSWell {
+    private readonly store;
+    readonly path: string;
+    readonly plateMetadata: PlateWell;
+    readonly metadata: WellMetadata;
+    private readonly _images;
+    constructor(options: HCSWellOptions);
+    get rowIndex(): number;
+    get columnIndex(): number;
+    get images(): WellImage[];
+    getImage(fieldIndex?: number): Promise<Multiscales | null>;
+    getImageByAcquisition(acquisitionId: number, fieldIndex?: number): Promise<Multiscales | null>;
+    static fromStore(store: string | object, wellPath: string, wellMetadata: PlateWell, imageCacheSize?: number | undefined): HCSWell;
+}
+export declare class HCSPlate {
+    private readonly store;
+    readonly metadata: PlateMetadata;
+    private readonly _wells;
+    private readonly imageCacheSize;
+    constructor(options: HCSPlateOptions);
+    get name(): string | undefined;
+    get rows(): PlateRow[];
+    get columns(): PlateColumn[];
+    get wells(): PlateWell[];
+    get acquisitions(): PlateAcquisition[] | undefined;
+    get fieldCount(): number | undefined;
+    getWell(rowName: string, columnName: string): HCSWell | null;
+    getWellByIndices(rowIndex: number, columnIndex: number): HCSWell | null;
+}
+//# sourceMappingURL=hcs.d.ts.map

package/esm/types/hcs.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"hcs.d.ts","sourceRoot":"","sources":["../../src/types/hcs.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AACpD,OAAO,KAAK,EACV,gBAAgB,EAChB,WAAW,EACX,QAAQ,EACR,SAAS,EACT,SAAS,EACV,MAAM,qBAAqB,CAAC;AAE7B,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,qBAAa,QAAQ,CAAC,CAAC,EAAE,CAAC;IACxB,OAAO,CAAC,KAAK,CAAY;IACzB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;gBAErB,OAAO,EAAE,eAAe;IAKpC,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,GAAG,SAAS;IAU1B,GAAG,CAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,GAAG,IAAI;IAc3B,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,OAAO;IAIpB,KAAK,IAAI,IAAI;CAGd;AAED,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,WAAW,EAAE,CAAC;IACvB,IAAI,EAAE,QAAQ,EAAE,CAAC;IACjB,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,YAAY,CAAC,EAAE,gBAAgB,EAAE,GAAG,SAAS,CAAC;IAC9C,WAAW,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACjC,IAAI,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CAC3B;AAED,MAAM,WAAW,YAAY;IAC3B,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC;IACvB,QAAQ,EAAE,aAAa,CAAC;IACxB,aAAa,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACnC,cAAc,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CACrC;AAED,MAAM,WAAW,cAAc;IAC7B,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC;IACvB,QAAQ,EAAE,MAAM,CAAC;IACjB,aAAa,EAAE,SAAS,CAAC;IACzB,iBAAiB,EAAE,YAAY,CAAC;IAChC,cAAc,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CACrC;AAED,qBAAa,OAAO;IAClB,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAkB;IACxC,SAAgB,IAAI,EAAE,MAAM,CAAC;IAC7B,SAAgB,aAAa,EAAE,SAAS,CAAC;IACzC,SAAgB,QAAQ,EAAE,YAAY,CAAC;IACvC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAgC;gBAE5C,OAAO,EAAE,cAAc;IAenC,IAAI,QAAQ,IAAI,MAAM,CAErB;IAED,IAAI,WAAW,IAAI,MAAM,CAExB;IAED,IAAI,MAAM,IAAI,SAAS,EAAE,CAExB;IAEK,QAAQ,CAAC,UAAU,GAAE,MAAU,GAAG,OAAO,CAAC,WAAW,GAAG,IAAI,CAAC;IAqCnE,qBAAqB,CACnB,aAAa,EAAE,MAAM,EACrB,UAAU,GAAE,MAAU,GACrB,OAAO,CAAC,WAAW,GAAG,IAAI,CAAC;IAiB9B,MAAM,CAAC,SAAS,CACd,KAAK,EAAE,MAAM,GAAG,MAAM,EACtB,QAAQ,EAAE,MAAM,EAChB,YAAY,EAAE,SAAS,EACvB,cAAc,CAAC,EAAE,MAAM,GAAG,SAAS,GAClC,OAAO;CAkBX;AAED,qBAAa,QAAQ;IACnB,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAkB;IACxC,SAAgB,QAAQ,EAAE,aAAa,CAAC;IACxC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAA4B;IACnD,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAqB;gBAExC,OAAO,EAAE,eAAe;IAmBpC,IAAI,IAAI,IAAI,MAAM,GAAG,SAAS,CAE7B;IAED,IAAI,IAAI,IAAI,QAAQ,EAAE,CAErB;IAED,IAAI,OAAO,IAAI,WAAW,EAAE,CAE3B;IAED,IAAI,KAAK,IAAI,SAAS,EAAE,CAEvB;IAED,IAAI,YAAY,IAAI,gBAAgB,EAAE,GAAG,SAAS,CAIjD;IAED,IAAI,UAAU,IAAI,MAAM,GAAG,SAAS,CAEnC;IAED,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;IA+B5D,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,GAAG,IAAI;CAcxE"}

package/esm/types/hcs.js

@@ -0,0 +1,204 @@
+export class LRUCache {
+    cache;
+    maxSize;
+    constructor(options) {
+        this.cache = new Map();
+        this.maxSize = options.maxSize;
+    }
+    get(key) {
+        const value = this.cache.get(key);
+        if (value !== undefined) {
+            // Move to end (most recently used)
+            this.cache.delete(key);
+            this.cache.set(key, value);
+        }
+        return value;
+    }
+    set(key, value) {
+        if (this.cache.has(key)) {
+            // Update existing item
+            this.cache.delete(key);
+        }
+        else if (this.cache.size >= this.maxSize) {
+            // Remove least recently used item
+            const firstKey = this.cache.keys().next().value;
+            if (firstKey !== undefined) {
+                this.cache.delete(firstKey);
+            }
+        }
+        this.cache.set(key, value);
+    }
+    has(key) {
+        return this.cache.has(key);
+    }
+    clear() {
+        this.cache.clear();
+    }
+}
+export class HCSWell {
+    store;
+    path;
+    plateMetadata;
+    metadata;
+    _images;
+    constructor(options) {
+        this.store = options.store;
+        this.path = options.wellPath;
+        this.plateMetadata = { ...options.plateMetadata };
+        this.metadata = {
+            images: [...options.wellGroupMetadata.images],
+            version: options.wellGroupMetadata.version,
+        };
+        const imageCacheSize = options.imageCacheSize ?? 100;
+        this._images = new LRUCache({
+            maxSize: imageCacheSize,
+        });
+    }
+    get rowIndex() {
+        return this.plateMetadata.rowIndex;
+    }
+    get columnIndex() {
+        return this.plateMetadata.columnIndex;
+    }
+    get images() {
+        return [...this.metadata.images];
+    }
+    async getImage(fieldIndex = 0) {
+        if (fieldIndex < 0 || fieldIndex >= this.metadata.images.length) {
+            return null;
+        }
+        const imageMeta = this.metadata.images[fieldIndex];
+        const imagePath = `${this.path}/${imageMeta.path}`;
+        // Check cache first
+        const cached = this._images.get(imagePath);
+        if (cached) {
+            return cached;
+        }
+        // Load the image using fromNgffZarr
+        const { fromNgffZarr } = await import("../io/from_ngff_zarr.js");
+        let fullImagePath;
+        if (typeof this.store === "string") {
+            // If store is a path string, append the image path
+            fullImagePath = `${this.store}/${this.path}/${imageMeta.path}`;
+        }
+        else {
+            // For other store types, we need to handle differently
+            // This would need to be adapted based on the specific store type
+            throw new Error("Non-string store types not yet implemented for HCS");
+        }
+        try {
+            const multiscales = await fromNgffZarr(fullImagePath);
+            this._images.set(imagePath, multiscales);
+            return multiscales;
+        }
+        catch (error) {
+            console.error(`Failed to load image at ${fullImagePath}:`, error);
+            return null;
+        }
+    }
+    getImageByAcquisition(acquisitionId, fieldIndex = 0) {
+        // Find images for the specified acquisition
+        const acquisitionImages = this.metadata.images.filter((img) => img.acquisition === acquisitionId);
+        if (fieldIndex < 0 || fieldIndex >= acquisitionImages.length) {
+            return Promise.resolve(null);
+        }
+        // Find the actual image index in the full list
+        const targetImage = acquisitionImages[fieldIndex];
+        const actualIndex = this.metadata.images.indexOf(targetImage);
+        return this.getImage(actualIndex);
+    }
+    static fromStore(store, wellPath, wellMetadata, imageCacheSize) {
+        // Simplified implementation - we'll improve this when implementing the IO functions
+        const wellGroupMetadata = {
+            images: [
+                { path: "0", acquisition: 0 },
+                { path: "1", acquisition: 0 },
+            ],
+            version: "0.4",
+        };
+        return new HCSWell({
+            store,
+            wellPath,
+            plateMetadata: wellMetadata,
+            wellGroupMetadata,
+            imageCacheSize,
+        });
+    }
+}
+export class HCSPlate {
+    store;
+    metadata;
+    _wells;
+    imageCacheSize;
+    constructor(options) {
+        this.store = options.store;
+        this.metadata = {
+            columns: [...options.metadata.columns],
+            rows: [...options.metadata.rows],
+            wells: [...options.metadata.wells],
+            version: options.metadata.version,
+            acquisitions: options.metadata.acquisitions
+                ? [...options.metadata.acquisitions]
+                : undefined,
+            field_count: options.metadata.field_count,
+            name: options.metadata.name,
+        };
+        this.imageCacheSize = options.imageCacheSize;
+        const wellCacheSize = options.wellCacheSize ?? 500;
+        this._wells = new LRUCache({ maxSize: wellCacheSize });
+    }
+    get name() {
+        return this.metadata.name;
+    }
+    get rows() {
+        return [...this.metadata.rows];
+    }
+    get columns() {
+        return [...this.metadata.columns];
+    }
+    get wells() {
+        return [...this.metadata.wells];
+    }
+    get acquisitions() {
+        return this.metadata.acquisitions
+            ? [...this.metadata.acquisitions]
+            : undefined;
+    }
+    get fieldCount() {
+        return this.metadata.field_count;
+    }
+    getWell(rowName, columnName) {
+        const wellPath = `${rowName}/${columnName}`;
+        // Check if well exists in metadata
+        const wellMeta = this.metadata.wells.find((well) => well.path === wellPath);
+        if (!wellMeta) {
+            return null;
+        }
+        // Check cache first
+        const cached = this._wells.get(wellPath);
+        if (cached) {
+            return cached;
+        }
+        // Load the well
+        try {
+            const well = HCSWell.fromStore(this.store, wellPath, wellMeta, this.imageCacheSize);
+            this._wells.set(wellPath, well);
+            return well;
+        }
+        catch (error) {
+            console.error(`Failed to load well at ${wellPath}:`, error);
+            return null;
+        }
+    }
+    getWellByIndices(rowIndex, columnIndex) {
+        if (rowIndex < 0 ||
+            rowIndex >= this.metadata.rows.length ||
+            columnIndex < 0 ||
+            columnIndex >= this.metadata.columns.length) {
+            return null;
+        }
+        const rowName = this.metadata.rows[rowIndex].name;
+        const columnName = this.metadata.columns[columnIndex].name;
+        return this.getWell(rowName, columnName);
+    }
+}

package/esm/types/methods.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"methods.d.ts","sourceRoot":"","sources":["../../src/types/methods.ts"],"names":[],"mappings":"AAAA,oBAAY,OAAO;IACjB,gBAAgB,qBAAqB;IACrC,kBAAkB,uBAAuB;IACzC,mBAAmB,wBAAwB;CAC5C;AAED,eAAO,MAAM,aAAa,EAAE,OAAO,EAA2B,CAAC"}
+{"version":3,"file":"methods.d.ts","sourceRoot":"","sources":["../../src/types/methods.ts"],"names":[],"mappings":"AAEA,oBAAY,OAAO;IACjB,gBAAgB,qBAAqB;IACrC,kBAAkB,uBAAuB;IACzC,mBAAmB,wBAAwB;CAC5C;AAED,eAAO,MAAM,aAAa,EAAE,OAAO,EAA2B,CAAC"}

package/esm/types/methods.js

@@ -1,3 +1,5 @@
+// SPDX-FileCopyrightText: Copyright (c) Fideus Labs LLC
+// SPDX-License-Identifier: MIT
 export var Methods;
 (function (Methods) {
     Methods["ITKWASM_GAUSSIAN"] = "itkwasm_gaussian";

package/esm/types/multiscales.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"multiscales.d.ts","sourceRoot":"","sources":["../../src/types/multiscales.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AACnD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAE5C,MAAM,MAAM,SAAS,GACjB,MAAM,GACN,MAAM,EAAE,GACR,MAAM,EAAE,EAAE,GACV,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,SAAS,CAAC,CAAC;AAElD,MAAM,WAAW,kBAAkB;IACjC,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,QAAQ,EAAE,QAAQ,CAAC;IACnB,YAAY,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,GAAG,SAAS,CAAC;IAC9D,MAAM,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,MAAM,EAAE,SAAS,GAAG,SAAS,CAAC;CAC/B;AAED,qBAAa,WAAW;IACtB,SAAgB,MAAM,EAAE,SAAS,EAAE,CAAC;IACpC,SAAgB,QAAQ,EAAE,QAAQ,CAAC;IACnC,SAAgB,YAAY,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,GAAG,SAAS,CAAC;IAC9E,SAAgB,MAAM,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5C,SAAgB,MAAM,EAAE,SAAS,GAAG,SAAS,CAAC;gBAElC,OAAO,EAAE,kBAAkB;IAUvC,QAAQ,IAAI,MAAM;CAwBnB"}
+{"version":3,"file":"multiscales.d.ts","sourceRoot":"","sources":["../../src/types/multiscales.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AACnD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAE5C,MAAM,MAAM,SAAS,GACjB,MAAM,GACN,MAAM,EAAE,GACR,MAAM,EAAE,EAAE,GACV,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,GAAG,SAAS,CAAC,CAAC;AAElD,MAAM,WAAW,kBAAkB;IACjC,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,QAAQ,EAAE,QAAQ,CAAC;IACnB,YAAY,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,GAAG,SAAS,CAAC;IAC9D,MAAM,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,MAAM,EAAE,SAAS,GAAG,SAAS,CAAC;CAC/B;AAED,qBAAa,WAAW;IACtB,SAAgB,MAAM,EAAE,SAAS,EAAE,CAAC;IACpC,SAAgB,QAAQ,EAAE,QAAQ,CAAC;IACnC,SAAgB,YAAY,EAAE,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,MAAM,CAAC,EAAE,GAAG,SAAS,CAAC;IAC9E,SAAgB,MAAM,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5C,SAAgB,MAAM,EAAE,SAAS,GAAG,SAAS,CAAC;gBAElC,OAAO,EAAE,kBAAkB;IAUvC,QAAQ,IAAI,MAAM;CAwBnB"}

package/esm/types/ngff_image.d.ts

@@ -1,22 +1,25 @@
-import type { LazyArray } from "./lazy_array.js";
+import * as zarr from "zarrita";
 import type { Units } from "./units.js";
+import type { AnatomicalOrientation } from "./rfc4.js";
 export type ComputedCallback = () => void;
 export interface NgffImageOptions {
-    data: LazyArray;
+    data: zarr.Array<zarr.DataType, zarr.Readable>;
     dims: string[];
     scale: Record<string, number>;
     translation: Record<string, number>;
     name: string | undefined;
     axesUnits: Record<string, Units> | undefined;
+    axesOrientations?: Record<string, AnatomicalOrientation> | undefined;
     computedCallbacks: ComputedCallback[] | undefined;
 }
 export declare class NgffImage {
-    readonly data: LazyArray;
+    readonly data: zarr.Array<zarr.DataType, zarr.Readable>;
     readonly dims: string[];
     readonly scale: Record<string, number>;
     readonly translation: Record<string, number>;
     readonly name: string;
     readonly axesUnits: Record<string, Units> | undefined;
+    readonly axesOrientations: Record<string, AnatomicalOrientation> | undefined;
     readonly computedCallbacks: ComputedCallback[];
     constructor(options: NgffImageOptions);
     toString(): string;

package/esm/types/ngff_image.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ngff_image.d.ts","sourceRoot":"","sources":["../../src/types/ngff_image.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AAExC,MAAM,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC;AAE1C,MAAM,WAAW,gBAAgB;IAC/B,IAAI,EAAE,SAAS,CAAC;IAChB,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACpC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IACzB,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,GAAG,SAAS,CAAC;IAC7C,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,SAAS,CAAC;CACnD;AAED,qBAAa,SAAS;IACpB,SAAgB,IAAI,EAAE,SAAS,CAAC;IAChC,SAAgB,IAAI,EAAE,MAAM,EAAE,CAAC;IAC/B,SAAgB,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9C,SAAgB,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACpD,SAAgB,IAAI,EAAE,MAAM,CAAC;IAC7B,SAAgB,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,GAAG,SAAS,CAAC;IAC7D,SAAgB,iBAAiB,EAAE,gBAAgB,EAAE,CAAC;gBAE1C,OAAO,EAAE,gBAAgB;IAUrC,QAAQ,IAAI,MAAM;CAcnB"}
+{"version":3,"file":"ngff_image.d.ts","sourceRoot":"","sources":["../../src/types/ngff_image.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,IAAI,MAAM,SAAS,CAAC;AAChC,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AACxC,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,WAAW,CAAC;AAEvD,MAAM,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC;AAE1C,MAAM,WAAW,gBAAgB;IAC/B,IAAI,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC/C,IAAI,EAAE,MAAM,EAAE,CAAC;IACf,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACpC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IACzB,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,GAAG,SAAS,CAAC;IAC7C,gBAAgB,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,qBAAqB,CAAC,GAAG,SAAS,CAAC;IACrE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,SAAS,CAAC;CACnD;AAED,qBAAa,SAAS;IACpB,SAAgB,IAAI,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC/D,SAAgB,IAAI,EAAE,MAAM,EAAE,CAAC;IAC/B,SAAgB,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9C,SAAgB,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACpD,SAAgB,IAAI,EAAE,MAAM,CAAC;IAC7B,SAAgB,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,GAAG,SAAS,CAAC;IAC7D,SAAgB,gBAAgB,EAC5B,MAAM,CAAC,MAAM,EAAE,qBAAqB,CAAC,GACrC,SAAS,CAAC;IACd,SAAgB,iBAAiB,EAAE,gBAAgB,EAAE,CAAC;gBAE1C,OAAO,EAAE,gBAAgB;IAarC,QAAQ,IAAI,MAAM;CA8BnB"}

package/esm/types/ngff_image.js

@@ -5,6 +5,7 @@ export class NgffImage {
     translation;
     name;
     axesUnits;
+    axesOrientations;
     computedCallbacks;
     constructor(options) {
         this.data = options.data;
@@ -13,19 +14,30 @@ export class NgffImage {
         this.translation = { ...options.translation };
         this.name = options.name ?? "image";
         this.axesUnits = options.axesUnits ? { ...options.axesUnits } : undefined;
+        this.axesOrientations = options.axesOrientations
+            ? { ...options.axesOrientations }
+            : undefined;
         this.computedCallbacks = [...(options.computedCallbacks ?? [])];
     }
     toString() {
         const axesUnitsStr = this.axesUnits
             ? JSON.stringify(this.axesUnits)
             : "None";
+        const axesOrientationsStr = this.axesOrientations
+            ? JSON.stringify(this.axesOrientations)
+            : "None";
+        // Create array string representation using zarr.Array properties
+        const path = this.data.path || this.name;
+        const chunks = this.data.chunks.join(", ");
+        const arrayStr = `Array(name=${path}, shape=(${this.data.shape.join(", ")}), dtype=${this.data.dtype}, chunksize=(${chunks}), chunktype=TypedArray)`;
         return `NgffImage(
-    data=${this.data.toString()},
+    data=${arrayStr},
     dims=[${this.dims.map((d) => `'${d}'`).join(", ")}],
     scale=${JSON.stringify(this.scale)},
     translation=${JSON.stringify(this.translation)},
     name='${this.name}',
     axes_units=${axesUnitsStr},
+    axes_orientations=${axesOrientationsStr},
     computed_callbacks=[${this.computedCallbacks.length} callbacks]
 )`;
     }