@fideus-labs/fidnii 0.5.0 → 0.7.0

package/dist/OMEZarrNVImage.d.ts

@@ -2,7 +2,7 @@ import type { Multiscales, Omero } from "@fideus-labs/ngff-zarr";
 import type { Niivue } from "@niivue/niivue";
 import { NVImage } from "@niivue/niivue";
 import { type OMEZarrNVImageEventListener, type OMEZarrNVImageEventListenerOptions, type OMEZarrNVImageEventMap, type PopulateTrigger } from "./events.js";
-import type { ClipPlane, ClipPlanes, OMEZarrNVImageOptions, SlabBufferState, SlabSliceType, VolumeBounds } from "./types.js";
+import type { ClipPlane, ClipPlanes, OMEZarrNVImageOptions, SlabBufferState, SlabSliceType, TimeAxisInfo, VolumeBounds } from "./types.js";
 /**
  * OMEZarrNVImage extends NVImage to support rendering OME-Zarr images in NiiVue.
  *
@@ -26,6 +26,15 @@ export declare class OMEZarrNVImage extends NVImage {
      * OMERO intensity windowing is skipped.
      */
     readonly isLabelImage: boolean;
+    /**
+     * The continuous colormap name used for rendering.
+     *
+     * Overrides the NVImage setter so that changing the colormap on this
+     * image automatically propagates to all slab (2D slice) NVImages.
+     * Label images are unaffected — they use `setColormapLabel()` instead.
+     */
+    get colormap(): string;
+    set colormap(cm: string);
     /** Reference to NiiVue instance */
     private readonly niivue;
     /** Buffer manager for dynamically-sized pixel data */
@@ -63,8 +72,8 @@ export declare class OMEZarrNVImage extends NVImage {
     private readonly _volumeBounds;
     /** Current buffer bounds in world space (may differ from full volume when clipped) */
     private _currentBufferBounds;
-    /** Previous clip plane change handler (to restore later) */
-    private previousOnClipPlaneChange?;
+    /** AbortController for the clip plane event listener on the primary NV */
+    private _clipPlaneAbortController?;
     /** Debounce delay for clip plane updates (ms) */
     private readonly clipPlaneDebounceMs;
     /** Timeout handle for debounced clip plane refetch */
@@ -83,6 +92,12 @@ export declare class OMEZarrNVImage extends NVImage {
     private readonly _eventTarget;
     /** Pending populate request (latest wins - replaces any previous pending) */
     private _pendingPopulateRequest;
+    /**
+     * AbortController for the in-flight `populateVolume` fetch.
+     * Aborted when a new `populateVolume` call supersedes the current one,
+     * allowing in-flight HTTP requests to be cancelled promptly.
+     */
+    private _populateAbortController;
     /** Current populate trigger (set at start of populateVolume, used by events) */
     private _currentPopulateTrigger;
     /** Attached Niivue instances and their state */
@@ -107,6 +122,31 @@ export declare class OMEZarrNVImage extends NVImage {
     private _viewportUpdateTimeout;
     /** Per-slab AbortController to cancel in-flight progressive loads */
     private _slabAbortControllers;
+    /**
+     * Time axis metadata, or `null` if the dataset has no `"t"` dimension.
+     * Populated during construction by inspecting `NgffImage.dims`.
+     */
+    private readonly _timeAxisInfo;
+    /** Current time index (0-based). Always 0 for non-time datasets. */
+    private _timeIndex;
+    /** Number of adjacent time frames to pre-fetch in each direction. */
+    private readonly _timePrefetchCount;
+    /**
+     * LRU cache of pre-fetched 3D time frames, keyed by time index.
+     * Only used when `_timeAxisInfo` is non-null.
+     */
+    private readonly _timeFrameCache;
+    /** Set of time indices currently being pre-fetched (for dedup). */
+    private readonly _prefetchingTimeIndices;
+    /** AbortController for the most recent pre-fetch batch. */
+    private _prefetchAbortController;
+    /**
+     * Snapshot of the chunk-aligned region and resolution level used for
+     * the last successful 3D volume load. Used to serve cached time frames
+     * at the same spatial region. Cleared on clip plane / viewport / resolution
+     * changes.
+     */
+    private _lastLoadedRegion;
     /** Maximum 3D render zoom level for scroll-wheel zoom */
     private readonly _max3DZoom;
     /** Minimum 3D render zoom level for scroll-wheel zoom */
@@ -117,6 +157,8 @@ export declare class OMEZarrNVImage extends NVImage {
      * continuous zoom/pan interactions.
      */
     private static readonly VIEWPORT_DEBOUNCE_MS;
+    /** Default number of adjacent time frames to pre-fetch. */
+    private static readonly DEFAULT_TIME_PREFETCH_COUNT;
     /**
      * Private constructor. Use OMEZarrNVImage.create() for instantiation.
      */
@@ -171,6 +213,8 @@ export declare class OMEZarrNVImage extends NVImage {
      *
      * @param levelIndex - Resolution level index
      * @param requesterId - ID for request coalescing
+     * @param timeIndex - Time point index to fetch (defaults to `this._timeIndex`)
+     * @param signal - Optional AbortSignal to cancel the fetch
      */
     private loadResolutionLevel;
     /**
@@ -320,6 +364,76 @@ export declare class OMEZarrNVImage extends NVImage {
      * Get the volume bounds in world space.
      */
     getVolumeBounds(): VolumeBounds;
+    /**
+     * Time axis metadata, or `null` if the dataset has no `"t"` dimension.
+     *
+     * @example
+     * ```ts
+     * const info = image.timeAxisInfo
+     * if (info) {
+     *   console.log(`${info.count} time points, step=${info.step} ${info.unit}`)
+     * }
+     * ```
+     */
+    get timeAxisInfo(): TimeAxisInfo | null;
+    /**
+     * Total number of time points.
+     * Returns 1 for datasets without a `"t"` dimension.
+     */
+    get timeCount(): number;
+    /**
+     * Current time index (0-based).
+     * Always 0 for datasets without a `"t"` dimension.
+     */
+    get timeIndex(): number;
+    /**
+     * Compute the physical time value at a given index.
+     *
+     * @param index - Time index (0-based)
+     * @returns Physical time value (`origin + index * step`)
+     */
+    getTimeValue(index: number): number;
+    /**
+     * Set the active time index and reload the volume.
+     *
+     * If the requested frame is in the pre-fetch cache, the buffer is
+     * swapped instantly without a network fetch. Otherwise, the frame is
+     * loaded from the zarr store at the current resolution level and
+     * spatial region.
+     *
+     * After the frame is loaded, adjacent frames are pre-fetched in the
+     * background so subsequent scrubbing can serve frames from cache.
+     *
+     * @param index - Time index (0-based)
+     * @throws If `index` is out of range `[0, timeCount)`
+     *
+     * @example
+     * ```ts
+     * await image.setTimeIndex(5)
+     * image.addEventListener('timeChange', (e) => {
+     *   console.log(`Frame ${e.detail.index}, cached=${e.detail.cached}`)
+     * })
+     * ```
+     */
+    setTimeIndex(index: number): Promise<void>;
+    /**
+     * Clear the pre-fetched time frame cache.
+     *
+     * Called internally when the spatial region or resolution changes
+     * (clip planes, viewport, resolution level), since cached frames
+     * were fetched for the previous region and are no longer valid.
+     */
+    private _invalidateTimeFrameCache;
+    /**
+     * Pre-fetch adjacent time frames in the background.
+     *
+     * Fetches frames `[index - N, index + N]` (clamped to valid range)
+     * at the current resolution level and spatial region. Already-cached
+     * and currently-in-flight indices are skipped.
+     *
+     * @param centerIndex - The time index to pre-fetch around
+     */
+    private _prefetchAdjacentFrames;
     /**
      * Enable or disable viewport-aware resolution selection.
      *
@@ -340,7 +454,9 @@ export declare class OMEZarrNVImage extends NVImage {
      */
     getViewportBounds(): VolumeBounds | null;
     /**
-     * Hook viewport events (onMouseUp, onZoom3DChange, wheel) on a NV instance.
+     * Hook viewport events (mouseUp, zoom3DChange, wheel) on a NV instance.
+     * All listeners share a single AbortController so they can be torn down
+     * together via {@link _unhookViewportEvents}.
      */
     private _hookViewportEvents;
     /**
@@ -382,7 +498,13 @@ export declare class OMEZarrNVImage extends NVImage {
      */
     getIsLoading(): boolean;
     /**
-     * Wait for all pending fetches to complete.
+     * Wait for all async work to settle: debounced timers (clip plane
+     * refetch, viewport update, slab reload), the main `populateVolume`
+     * pipeline, all slab loads, and in-flight coalescer fetches.
+     *
+     * The method polls in a loop because debounced timers may fire while
+     * we are waiting, triggering new loads. It only resolves once every
+     * source of async work is idle simultaneously.
      */
     waitForIdle(): Promise<void>;
     /**
@@ -437,9 +559,10 @@ export declare class OMEZarrNVImage extends NVImage {
     /**
      * Attach a Niivue instance for slice-type-aware rendering.
      *
-     * The image auto-detects the NV's current slice type and hooks into
-     * `onOptsChange` to track mode changes and `onLocationChange` to track
-     * crosshair/slice position changes.
+     * The image auto-detects the NV's current slice type and uses
+     * `addEventListener('sliceTypeChange', ...)` to track mode changes and
+     * `addEventListener('locationChange', ...)` to track crosshair/slice
+     * position changes via Niivue's browser-native EventTarget API.
      *
      * When the NV is in a 2D slice mode (Axial, Coronal, Sagittal), the image
      * loads a slab (one chunk thick in the orthogonal direction) at the current
@@ -449,7 +572,9 @@ export declare class OMEZarrNVImage extends NVImage {
      */
     attachNiivue(nv: Niivue): void;
     /**
-     * Detach a Niivue instance, restoring its original callbacks.
+     * Detach a Niivue instance, removing all event listeners registered by this
+     * image (viewport, zoom-override, slice-type, location, and clip-plane
+     * listeners are all torn down via their respective `AbortController`s).
      *
      * @param nv - The Niivue instance to detach
      */
@@ -475,11 +600,19 @@ export declare class OMEZarrNVImage extends NVImage {
      */
     private _isSlabSliceType;
     /**
-     * Get the orthogonal axis index for a slab slice type.
-     * Returns index in [z, y, x] order:
-     * - Axial: slicing through Z → orthogonal axis = 0 (Z)
-     * - Coronal: slicing through Y → orthogonal axis = 1 (Y)
-     * - Sagittal: slicing through X → orthogonal axis = 2 (X)
+     * Get the NGFF array axis index that is orthogonal to a slice plane.
+     *
+     * NiiVue slice types refer to anatomical planes:
+     * - Axial: perpendicular to S/I (physicalRow 2)
+     * - Coronal: perpendicular to A/P (physicalRow 1)
+     * - Sagittal: perpendicular to R/L (physicalRow 0)
+     *
+     * When the dataset has permuted axes (e.g. NGFF y encodes S/I instead
+     * of A/P), the NGFF array axis that is orthogonal to a given anatomical
+     * plane differs from the default z/y/x mapping. This method uses the
+     * orientation metadata to find the correct NGFF axis.
+     *
+     * Returns index in [z, y, x] order (0=z, 1=y, 2=x).
      */
     private _getOrthogonalAxis;
     /**

package/dist/OMEZarrNVImage.d.ts.map

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