@fhirfly-io/mcp-server 0.1.7 → 0.2.1

package/CHANGELOG.md

@@ -0,0 +1,38 @@
+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+## [0.2.0] - 2026-02-23
+
+### Added
+- Claims Intelligence tools: `ncci_validate`, `mue_lookup`, `pfs_lookup`, `coverage_check`
+- SNOMED CT tools: `snomed_get`, `snomed_search`, `snomed_mappings`
+- Connectivity tool: `npi_connectivity`
+- `--version` / `-v` and `--help` / `-h` CLI flags
+- Single retry on HTTP 429 with `Retry-After` header parsing
+- Monotonically incrementing request IDs (replaces `Date.now()`)
+- `VERSION` export from package entry point
+- Behavioral test suite for server message handling
+- Client test suite with mocked fetch
+- Node.js 18/20/22 CI test matrix
+- Data Sources & Licensing section in README
+- This changelog
+
+### Fixed
+- Deduplicated MCP error codes (was defined in both `server.ts` and `types.ts`)
+- Server version now tracks package version via `version.ts`
+- Debug mode API key logging capped to 10 characters (was 15)
+
+### Changed
+- Total available tools: 20 → 28
+
+## [0.1.7] - 2026-02-21
+
+### Added
+- Initial public release
+- 20 MCP tools (NDC, NPI, RxNorm, LOINC, ICD-10, CVX, MVX, FDA Labels)
+- Claude Desktop integration via stdio transport
+- Debug mode via `FHIRFLY_DEBUG` environment variable
+
+[0.2.0]: https://gitlab.com/fhirfly-io/fhirfly-mcp-server/-/compare/v0.1.7...v0.2.0
+[0.1.7]: https://gitlab.com/fhirfly-io/fhirfly-mcp-server/-/releases/v0.1.7

package/README.md

@@ -13,6 +13,9 @@ This package lets Claude Desktop look up real healthcare reference data includin
 - **ICD-10** - Diagnosis and procedure codes (CMS)
 - **CVX/MVX** - Vaccine codes (CDC)
 - **FDA Drug Labels** - Prescribing information
+- **SNOMED CT** - Clinical concepts (IPS free set)
+- **Connectivity** - Provider FHIR endpoints and Direct addresses
+- **Claims Intelligence** - NCCI edits, MUE limits, PFS/RVU data, coverage determinations
 
 When you ask Claude about medications, providers, or clinical codes, it can look up accurate, current information instead of relying on training data.
 
@@ -95,6 +98,14 @@ Claude should use the FHIRfly tools to look up real data.
 | `fda_label_interactions` | Get drug interaction info |
 | `fda_label_dosing` | Get dosing information |
 | `fda_label_sections` | Get specific label sections |
+| `snomed_get` | Look up clinical concept by SNOMED CT ID |
+| `snomed_search` | Search SNOMED CT IPS concepts |
+| `snomed_mappings` | Find cross-terminology mappings for a SNOMED concept |
+| `npi_connectivity` | Look up provider connectivity (FHIR endpoints) |
+| `ncci_validate` | Check if two codes can be billed together (NCCI) |
+| `mue_lookup` | Look up max units of service (MUE limits) |
+| `pfs_lookup` | Look up Medicare fee schedule / RVU data |
+| `coverage_check` | Check LCD/NCD coverage determinations |
 
 ## Configuration Options
 
@@ -171,7 +182,27 @@ Your API key is sent to FHIRfly over HTTPS. No healthcare data is stored locally
 - [FHIRfly Documentation](https://fhirfly.io/docs)
 - [MCP Setup Guide](https://fhirfly.io/docs/mcp/claude-desktop)
 - [Get an API Key](https://fhirfly.io)
-- [Report Issues](https://github.com/FHIRfly-io/fhirfly-mcp-server/issues)
+- [Report Issues](https://gitlab.com/fhirfly-io/fhirfly-mcp-server/-/issues)
+
+## Data Sources & Licensing
+
+| Data Source | Provider | License |
+|-------------|----------|---------|
+| NDC Directory | FDA | Public domain |
+| NPPES (NPI) | CMS | Public domain |
+| RxNorm | NLM (NIH) | UMLS license (free) |
+| LOINC | Regenstrief Institute | Free with attribution |
+| ICD-10-CM/PCS | CMS | Public domain |
+| CVX/MVX | CDC | Public domain |
+| FDA Drug Labels | FDA/openFDA | Public domain |
+| SNOMED CT IPS | SNOMED International | CC BY 4.0 |
+| NCCI/MUE/PFS | CMS | Public domain |
+
+FHIRfly aggregates and indexes these data sources. See [fhirfly.io/docs](https://fhirfly.io/docs) for details.
+
+## Changelog
+
+See [CHANGELOG.md](./CHANGELOG.md) for release history.
 
 ## License
 

package/dist/cli.js

@@ -103,6 +103,7 @@ var StdioTransport = class {
 // src/client.ts
 var FhirflyClient = class {
   config;
+  nextId = 1;
   constructor(config) {
     this.config = config;
   }
@@ -112,7 +113,7 @@ var FhirflyClient = class {
   async request(method, params) {
     const requestBody = {
       jsonrpc: "2.0",
-      id: Date.now(),
+      id: this.nextId++,
       method,
       params
     };
@@ -141,14 +142,36 @@ var FhirflyClient = class {
           };
         }
         if (response.status === 429) {
-          return {
-            jsonrpc: "2.0",
-            id: requestBody.id,
-            error: {
-              code: -32002,
-              message: "Rate limit exceeded. Please slow down requests."
-            }
-          };
+          const retryAfter = response.headers.get("Retry-After");
+          const delaySec = Math.min(Number(retryAfter) || 1, 10);
+          if (this.config.debug) {
+            console.error(`[MCP DEBUG] Rate limited, retrying after ${delaySec}s`);
+          }
+          await new Promise((resolve) => setTimeout(resolve, delaySec * 1e3));
+          const retryResponse = await fetch(`${this.config.apiUrl}/mcp`, {
+            method: "POST",
+            headers: {
+              "Content-Type": "application/json",
+              "x-api-key": this.config.apiKey,
+              "User-Agent": "@fhirfly-io/mcp-server"
+            },
+            body: JSON.stringify(requestBody)
+          });
+          if (!retryResponse.ok) {
+            return {
+              jsonrpc: "2.0",
+              id: requestBody.id,
+              error: {
+                code: -32002,
+                message: "Rate limit exceeded. Please slow down requests."
+              }
+            };
+          }
+          const retryResult = await retryResponse.json();
+          if (this.config.debug) {
+            console.error("[MCP DEBUG] Retry response:", JSON.stringify(retryResult, null, 2));
+          }
+          return retryResult;
         }
         return {
           jsonrpc: "2.0",
@@ -192,10 +215,10 @@ var FhirflyClient = class {
   /**
    * Call a tool on the FHIRfly API
    */
-  async callTool(name, args) {
+  async callTool(name, args2) {
     const response = await this.request("tools/call", {
       name,
-      arguments: args
+      arguments: args2
     });
     if (response.error) {
       return {
@@ -215,17 +238,22 @@ var FhirflyClient = class {
   }
 };
 
-// src/server.ts
-var MCP_ERRORS = {
+// src/types.ts
+var MCP_ERROR_CODES = {
   PARSE_ERROR: -32700,
   INVALID_REQUEST: -32600,
   METHOD_NOT_FOUND: -32601,
   INVALID_PARAMS: -32602,
   INTERNAL_ERROR: -32603
 };
+
+// src/version.ts
+var VERSION = "0.2.0";
+
+// src/server.ts
 var SERVER_INFO = {
   name: "fhirfly-mcp-server",
-  version: "0.1.0"
+  version: VERSION
 };
 var SERVER_CAPABILITIES = {
   tools: {}
@@ -262,7 +290,7 @@ var McpServer = class {
           jsonrpc: "2.0",
           id: request.id ?? null,
           error: {
-            code: MCP_ERRORS.INVALID_REQUEST,
+            code: MCP_ERROR_CODES.INVALID_REQUEST,
             message: "Invalid JSON-RPC request"
           }
         };
@@ -292,7 +320,7 @@ var McpServer = class {
             jsonrpc: "2.0",
             id: request.id,
             error: {
-              code: MCP_ERRORS.METHOD_NOT_FOUND,
+              code: MCP_ERROR_CODES.METHOD_NOT_FOUND,
               message: `Unknown method: ${request.method}`
             }
           };
@@ -306,7 +334,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INTERNAL_ERROR,
+          code: MCP_ERROR_CODES.INTERNAL_ERROR,
           message: `Internal error: ${message}`
         }
       };
@@ -346,7 +374,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INTERNAL_ERROR,
+          code: MCP_ERROR_CODES.INTERNAL_ERROR,
           message: `Failed to list tools: ${message}`
         }
       };
@@ -362,7 +390,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INVALID_PARAMS,
+          code: MCP_ERROR_CODES.INVALID_PARAMS,
           message: "Missing tool name in params"
         }
       };
@@ -380,7 +408,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INTERNAL_ERROR,
+          code: MCP_ERROR_CODES.INTERNAL_ERROR,
           message: `Tool call failed: ${message}`
         }
       };
@@ -389,6 +417,29 @@ var McpServer = class {
 };
 
 // src/cli.ts
+var args = process.argv.slice(2);
+if (args.includes("--version") || args.includes("-v")) {
+  console.log(VERSION);
+  process.exit(0);
+}
+if (args.includes("--help") || args.includes("-h")) {
+  console.log(`@fhirfly-io/mcp-server v${VERSION}`);
+  console.log("");
+  console.log("MCP server for connecting AI assistants to FHIRfly healthcare data.");
+  console.log("");
+  console.log("Environment variables:");
+  console.log("  FHIRFLY_API_KEY   Your FHIRfly API key (required, starts with ffly_)");
+  console.log("  FHIRFLY_API_URL   API base URL (default: https://api.fhirfly.io)");
+  console.log("  FHIRFLY_DEBUG     Enable debug logging (set to 1 or true)");
+  console.log("");
+  console.log("Usage with Claude Desktop:");
+  console.log("  npx @fhirfly-io/mcp-server");
+  console.log("");
+  console.log("Flags:");
+  console.log("  --version, -v     Show version number");
+  console.log("  --help, -h        Show this help message");
+  process.exit(0);
+}
 var API_KEY = process.env.FHIRFLY_API_KEY;
 var API_URL = process.env.FHIRFLY_API_URL || "https://api.fhirfly.io";
 var DEBUG = process.env.FHIRFLY_DEBUG === "1" || process.env.FHIRFLY_DEBUG === "true";
@@ -418,7 +469,7 @@ if (DEBUG) {
   console.error("FHIRfly MCP Server - Debug Mode");
   console.error("=".repeat(50));
   console.error("API URL:", API_URL);
-  console.error("API Key:", API_KEY.slice(0, 15) + "...");
+  console.error("API Key:", API_KEY.slice(0, 10) + "...");
   console.error("=".repeat(50));
 }
 var server = new McpServer({

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Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * MCP Stdio Transport\n * Handles JSON-RPC communication over stdin/stdout\n */\n\nimport { createInterface } from \"readline\";\nimport type { JsonRpcRequest, JsonRpcResponse } from \"./types.js\";\n\nexport type MessageHandler = (request: JsonRpcRequest) => Promise<JsonRpcResponse>;\n\nexport class StdioTransport {\n  private handler: MessageHandler | null = null;\n  private debug: boolean;\n  private pendingRequests: number = 0;\n  private stdinClosed: boolean = false;\n\n  constructor(debug: boolean = false) {\n    this.debug = debug;\n  }\n\n  /**\n   * Set the handler for incoming messages\n   */\n  setHandler(handler: MessageHandler): void {\n    this.handler = handler;\n  }\n\n  /**\n   * Start listening for messages on stdin\n   */\n  start(): void {\n    const rl = createInterface({\n      input: process.stdin,\n      output: process.stdout,\n      terminal: false,\n    });\n\n    // Buffer for accumulating partial messages\n    let buffer = \"\";\n\n    rl.on(\"line\", async (line) => {\n      buffer += line;\n\n      // Try to parse as JSON\n      try {\n        const request = JSON.parse(buffer) as JsonRpcRequest;\n        buffer = \"\"; // Clear buffer on successful parse\n\n        if (this.debug) {\n          console.error(\"[MCP DEBUG] Received:\", JSON.stringify(request, null, 2));\n        }\n\n        if (this.handler) {\n          this.pendingRequests++;\n          try {\n            const response = await this.handler(request);\n            this.send(response);\n          } finally {\n            this.pendingRequests--;\n            this.maybeExit();\n          }\n        }\n      } catch {\n        // If parse fails, might be partial message - keep buffering\n        // Unless it looks like a complete but invalid message\n        if (line.trim().endsWith(\"}\")) {\n          this.sendError(null, -32700, \"Parse error: Invalid JSON\");\n          buffer = \"\";\n        }\n      }\n    });\n\n    rl.on(\"close\", () => {\n      this.stdinClosed = true;\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin closed, waiting for pending requests...\");\n      }\n      this.maybeExit();\n    });\n\n    // Handle errors gracefully\n    process.stdin.on(\"error\", (err) => {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin error:\", err.message);\n      }\n    });\n  }\n\n  /**\n   * Exit if stdin is closed and no pending requests\n   */\n  private maybeExit(): void {\n    if (this.stdinClosed && this.pendingRequests === 0) {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] All requests complete, exiting\");\n      }\n      process.exit(0);\n    }\n  }\n\n  /**\n   * Send a JSON-RPC response to stdout\n   */\n  send(response: JsonRpcResponse): void {\n    const message = JSON.stringify(response);\n\n    if (this.debug) {\n      console.error(\"[MCP DEBUG] Sending:\", JSON.stringify(response, null, 2));\n    }\n\n    // Write to stdout with newline\n    process.stdout.write(message + \"\\n\");\n  }\n\n  /**\n   * Send an error response\n   */\n  sendError(id: string | number | null, code: number, message: string, data?: unknown): void {\n    this.send({\n      jsonrpc: \"2.0\",\n      id,\n      error: {\n        code,\n        message,\n        data,\n      },\n    });\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly API Client\n * Makes HTTP requests to the FHIRfly MCP endpoint\n */\n\nimport type {\n  JsonRpcRequest,\n  JsonRpcResponse,\n  McpServerConfig,\n  McpToolsListResult,\n  McpToolCallResult,\n} from \"./types.js\";\n\nexport class FhirflyClient {\n  private config: McpServerConfig;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n  }\n\n  /**\n   * Send a JSON-RPC request to the FHIRfly MCP endpoint\n   */\n  async request(method: string, params?: Record<string, unknown>): Promise<JsonRpcResponse> {\n    const requestBody: JsonRpcRequest = {\n      jsonrpc: \"2.0\",\n      id: Date.now(),\n      method,\n      params,\n    };\n\n    if (this.config.debug) {\n      console.error(`[MCP DEBUG] API Request: ${method}`, params);\n    }\n\n    try {\n      const response = await fetch(`${this.config.apiUrl}/mcp`, {\n        method: \"POST\",\n        headers: {\n          \"Content-Type\": \"application/json\",\n          \"x-api-key\": this.config.apiKey,\n          \"User-Agent\": \"@fhirfly-io/mcp-server\",\n        },\n        body: JSON.stringify(requestBody),\n      });\n\n      if (!response.ok) {\n        // Handle HTTP errors\n        if (response.status === 401) {\n          return {\n            jsonrpc: \"2.0\",\n            id: requestBody.id,\n            error: {\n              code: -32001,\n              message: \"Authentication failed. Check your FHIRFLY_API_KEY.\",\n            },\n          };\n        }\n\n        if (response.status === 429) {\n          return {\n            jsonrpc: \"2.0\",\n            id: requestBody.id,\n            error: {\n              code: -32002,\n              message: \"Rate limit exceeded. Please slow down requests.\",\n            },\n          };\n        }\n\n        return {\n          jsonrpc: \"2.0\",\n          id: requestBody.id,\n          error: {\n            code: -32000,\n            message: `API error: ${response.status} ${response.statusText}`,\n          },\n        };\n      }\n\n      const result = (await response.json()) as JsonRpcResponse;\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Response:\", JSON.stringify(result, null, 2));\n      }\n\n      return result;\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: requestBody.id,\n        error: {\n          code: -32003,\n          message: `Network error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Get list of available tools from FHIRfly\n   */\n  async listTools(): Promise<McpToolsListResult> {\n    const response = await this.request(\"tools/list\", {});\n\n    if (response.error) {\n      throw new Error(response.error.message);\n    }\n\n    return response.result as McpToolsListResult;\n  }\n\n  /**\n   * Call a tool on the FHIRfly API\n   */\n  async callTool(name: string, args: Record<string, unknown>): Promise<McpToolCallResult> {\n    const response = await this.request(\"tools/call\", {\n      name,\n      arguments: args,\n    });\n\n    if (response.error) {\n      return {\n        content: [\n          {\n            type: \"text\",\n            text: JSON.stringify({\n              error: response.error.message,\n              code: response.error.code,\n            }),\n          },\n        ],\n        isError: true,\n      };\n    }\n\n    return response.result as McpToolCallResult;\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly MCP Server\n * Main server class that handles MCP protocol messages\n */\n\nimport { StdioTransport } from \"./transport.js\";\nimport { FhirflyClient } from \"./client.js\";\nimport type {\n  JsonRpcRequest,\n  JsonRpcResponse,\n  McpServerConfig,\n  McpToolCallParams,\n} from \"./types.js\";\n\nconst MCP_ERRORS = {\n  PARSE_ERROR: -32700,\n  INVALID_REQUEST: -32600,\n  METHOD_NOT_FOUND: -32601,\n  INVALID_PARAMS: -32602,\n  INTERNAL_ERROR: -32603,\n} as const;\n\n// Server capabilities\nconst SERVER_INFO = {\n  name: \"fhirfly-mcp-server\",\n  version: \"0.1.0\",\n};\n\nconst SERVER_CAPABILITIES = {\n  tools: {},\n};\n\nexport class McpServer {\n  private transport: StdioTransport;\n  private client: FhirflyClient;\n  private config: McpServerConfig;\n  public initialized: boolean = false;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n    this.transport = new StdioTransport(config.debug);\n    this.client = new FhirflyClient(config);\n  }\n\n  /**\n   * Start the MCP server\n   */\n  start(): void {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Starting FHIRfly MCP Server\");\n      console.error(\"[MCP DEBUG] API URL:\", this.config.apiUrl);\n      console.error(\"[MCP DEBUG] API Key:\", this.config.apiKey.slice(0, 10) + \"...\");\n    }\n\n    this.transport.setHandler(this.handleMessage.bind(this));\n    this.transport.start();\n  }\n\n  /**\n   * Handle incoming JSON-RPC messages\n   */\n  private async handleMessage(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      // Validate JSON-RPC request structure\n      if (request.jsonrpc !== \"2.0\" || !request.method) {\n        return {\n          jsonrpc: \"2.0\",\n          id: request.id ?? null,\n          error: {\n            code: MCP_ERRORS.INVALID_REQUEST,\n            message: \"Invalid JSON-RPC request\",\n          },\n        };\n      }\n\n      // Route to appropriate handler\n      switch (request.method) {\n        case \"initialize\":\n          return this.handleInitialize(request);\n\n        case \"initialized\":\n          // Client notification that initialization is complete\n          this.initialized = true;\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            result: {},\n          };\n\n        case \"tools/list\":\n          return this.handleToolsList(request);\n\n        case \"tools/call\":\n          return this.handleToolsCall(request);\n\n        case \"ping\":\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            result: {},\n          };\n\n        default:\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            error: {\n              code: MCP_ERRORS.METHOD_NOT_FOUND,\n              message: `Unknown method: ${request.method}`,\n            },\n          };\n      }\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] Handler error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERRORS.INTERNAL_ERROR,\n          message: `Internal error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Handle initialize request\n   */\n  private async handleInitialize(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Initialize request from client\");\n    }\n\n    return {\n      jsonrpc: \"2.0\",\n      id: request.id,\n      result: {\n        protocolVersion: \"2024-11-05\",\n        serverInfo: SERVER_INFO,\n        capabilities: SERVER_CAPABILITIES,\n      },\n    };\n  }\n\n  /**\n   * Handle tools/list request\n   */\n  private async handleToolsList(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      const result = await this.client.listTools();\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        result,\n      };\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERRORS.INTERNAL_ERROR,\n          message: `Failed to list tools: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Handle tools/call request\n   */\n  private async handleToolsCall(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    const params = request.params as McpToolCallParams | undefined;\n\n    if (!params?.name) {\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERRORS.INVALID_PARAMS,\n          message: \"Missing tool name in params\",\n        },\n      };\n    }\n\n    try {\n      const result = await this.client.callTool(params.name, params.arguments ?? {});\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        result,\n      };\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERRORS.INTERNAL_ERROR,\n          message: `Tool call failed: ${message}`,\n        },\n      };\n    }\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly MCP Server CLI\n * Entry point for running as an MCP server\n */\n\nimport { McpServer } from \"./server.js\";\n\n// Configuration from environment\nconst API_KEY = process.env.FHIRFLY_API_KEY;\nconst API_URL = process.env.FHIRFLY_API_URL || \"https://api.fhirfly.io\";\nconst DEBUG = process.env.FHIRFLY_DEBUG === \"1\" || process.env.FHIRFLY_DEBUG === \"true\";\n\n// Validate required configuration\nif (!API_KEY) {\n  console.error(\"Error: FHIRFLY_API_KEY environment variable is required\");\n  console.error(\"\");\n  console.error(\"To get an API key:\");\n  console.error(\"  1. Sign up at https://fhirfly.io\");\n  console.error(\"  2. Go to Dashboard > Credentials\");\n  console.error(\"  3. Create an MCP credential\");\n  console.error(\"\");\n  console.error(\"Then set the environment variable:\");\n  console.error('  export FHIRFLY_API_KEY=\"your_api_key_here\"');\n  console.error(\"\");\n  console.error(\"Or configure in Claude Desktop's claude_desktop_config.json\");\n  process.exit(1);\n}\n\n// Validate API key format\nif (!API_KEY.startsWith(\"ffly_\")) {\n  console.error(\"Error: Invalid API key format\");\n  console.error(\"FHIRfly API keys start with 'ffly_'\");\n  console.error(\"\");\n  console.error(\"Please check your FHIRFLY_API_KEY environment variable.\");\n  process.exit(1);\n}\n\nif (DEBUG) {\n  console.error(\"=\".repeat(50));\n  console.error(\"FHIRfly MCP Server - Debug Mode\");\n  console.error(\"=\".repeat(50));\n  console.error(\"API URL:\", API_URL);\n  console.error(\"API Key:\", API_KEY.slice(0, 15) + \"...\");\n  console.error(\"=\".repeat(50));\n}\n\n// Create and start server\nconst server = new McpServer({\n  apiKey: API_KEY,\n  apiUrl: API_URL,\n  debug: DEBUG,\n});\n\nserver.start();\n"]}
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Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * MCP Stdio Transport\n * Handles JSON-RPC communication over stdin/stdout\n */\n\nimport { createInterface } from \"readline\";\nimport type { JsonRpcRequest, JsonRpcResponse } from \"./types.js\";\n\nexport type MessageHandler = (request: JsonRpcRequest) => Promise<JsonRpcResponse>;\n\nexport class StdioTransport {\n  private handler: MessageHandler | null = null;\n  private debug: boolean;\n  private pendingRequests: number = 0;\n  private stdinClosed: boolean = false;\n\n  constructor(debug: boolean = false) {\n    this.debug = debug;\n  }\n\n  /**\n   * Set the handler for incoming messages\n   */\n  setHandler(handler: MessageHandler): void {\n    this.handler = handler;\n  }\n\n  /**\n   * Start listening for messages on stdin\n   */\n  start(): void {\n    const rl = createInterface({\n      input: process.stdin,\n      output: process.stdout,\n      terminal: false,\n    });\n\n    // Buffer for accumulating partial messages\n    let buffer = \"\";\n\n    rl.on(\"line\", async (line) => {\n      buffer += line;\n\n      // Try to parse as JSON\n      try {\n        const request = JSON.parse(buffer) as JsonRpcRequest;\n        buffer = \"\"; // Clear buffer on successful parse\n\n        if (this.debug) {\n          console.error(\"[MCP DEBUG] Received:\", JSON.stringify(request, null, 2));\n        }\n\n        if (this.handler) {\n          this.pendingRequests++;\n          try {\n            const response = await this.handler(request);\n            this.send(response);\n          } finally {\n            this.pendingRequests--;\n            this.maybeExit();\n          }\n        }\n      } catch {\n        // If parse fails, might be partial message - keep buffering\n        // Unless it looks like a complete but invalid message\n        if (line.trim().endsWith(\"}\")) {\n          this.sendError(null, -32700, \"Parse error: Invalid JSON\");\n          buffer = \"\";\n        }\n      }\n    });\n\n    rl.on(\"close\", () => {\n      this.stdinClosed = true;\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin closed, waiting for pending requests...\");\n      }\n      this.maybeExit();\n    });\n\n    // Handle errors gracefully\n    process.stdin.on(\"error\", (err) => {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin error:\", err.message);\n      }\n    });\n  }\n\n  /**\n   * Exit if stdin is closed and no pending requests\n   */\n  private maybeExit(): void {\n    if (this.stdinClosed && this.pendingRequests === 0) {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] All requests complete, exiting\");\n      }\n      process.exit(0);\n    }\n  }\n\n  /**\n   * Send a JSON-RPC response to stdout\n   */\n  send(response: JsonRpcResponse): void {\n    const message = JSON.stringify(response);\n\n    if (this.debug) {\n      console.error(\"[MCP DEBUG] Sending:\", JSON.stringify(response, null, 2));\n    }\n\n    // Write to stdout with newline\n    process.stdout.write(message + \"\\n\");\n  }\n\n  /**\n   * Send an error response\n   */\n  sendError(id: string | number | null, code: number, message: string, data?: unknown): void {\n    this.send({\n      jsonrpc: \"2.0\",\n      id,\n      error: {\n        code,\n        message,\n        data,\n      },\n    });\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly API Client\n * Makes HTTP requests to the FHIRfly MCP endpoint\n */\n\nimport type {\n  JsonRpcRequest,\n  JsonRpcResponse,\n  McpServerConfig,\n  McpToolsListResult,\n  McpToolCallResult,\n} from \"./types.js\";\n\nexport class FhirflyClient {\n  private config: McpServerConfig;\n  private nextId = 1;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n  }\n\n  /**\n   * Send a JSON-RPC request to the FHIRfly MCP endpoint\n   */\n  async request(method: string, params?: Record<string, unknown>): Promise<JsonRpcResponse> {\n    const requestBody: JsonRpcRequest = {\n      jsonrpc: \"2.0\",\n      id: this.nextId++,\n      method,\n      params,\n    };\n\n    if (this.config.debug) {\n      console.error(`[MCP DEBUG] API Request: ${method}`, params);\n    }\n\n    try {\n      const response = await fetch(`${this.config.apiUrl}/mcp`, {\n        method: \"POST\",\n        headers: {\n          \"Content-Type\": \"application/json\",\n          \"x-api-key\": this.config.apiKey,\n          \"User-Agent\": \"@fhirfly-io/mcp-server\",\n        },\n        body: JSON.stringify(requestBody),\n      });\n\n      if (!response.ok) {\n        // Handle HTTP errors\n        if (response.status === 401) {\n          return {\n            jsonrpc: \"2.0\",\n            id: requestBody.id,\n            error: {\n              code: -32001,\n              message: \"Authentication failed. Check your FHIRFLY_API_KEY.\",\n            },\n          };\n        }\n\n        if (response.status === 429) {\n          // Retry once after Retry-After delay (cap at 10s)\n          const retryAfter = response.headers.get(\"Retry-After\");\n          const delaySec = Math.min(Number(retryAfter) || 1, 10);\n\n          if (this.config.debug) {\n            console.error(`[MCP DEBUG] Rate limited, retrying after ${delaySec}s`);\n          }\n\n          await new Promise((resolve) => setTimeout(resolve, delaySec * 1000));\n\n          const retryResponse = await fetch(`${this.config.apiUrl}/mcp`, {\n            method: \"POST\",\n            headers: {\n              \"Content-Type\": \"application/json\",\n              \"x-api-key\": this.config.apiKey,\n              \"User-Agent\": \"@fhirfly-io/mcp-server\",\n            },\n            body: JSON.stringify(requestBody),\n          });\n\n          if (!retryResponse.ok) {\n            return {\n              jsonrpc: \"2.0\",\n              id: requestBody.id,\n              error: {\n                code: -32002,\n                message: \"Rate limit exceeded. Please slow down requests.\",\n              },\n            };\n          }\n\n          const retryResult = (await retryResponse.json()) as JsonRpcResponse;\n\n          if (this.config.debug) {\n            console.error(\"[MCP DEBUG] Retry response:\", JSON.stringify(retryResult, null, 2));\n          }\n\n          return retryResult;\n        }\n\n        return {\n          jsonrpc: \"2.0\",\n          id: requestBody.id,\n          error: {\n            code: -32000,\n            message: `API error: ${response.status} ${response.statusText}`,\n          },\n        };\n      }\n\n      const result = (await response.json()) as JsonRpcResponse;\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Response:\", JSON.stringify(result, null, 2));\n      }\n\n      return result;\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: requestBody.id,\n        error: {\n          code: -32003,\n          message: `Network error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Get list of available tools from FHIRfly\n   */\n  async listTools(): Promise<McpToolsListResult> {\n    const response = await this.request(\"tools/list\", {});\n\n    if (response.error) {\n      throw new Error(response.error.message);\n    }\n\n    return response.result as McpToolsListResult;\n  }\n\n  /**\n   * Call a tool on the FHIRfly API\n   */\n  async callTool(name: string, args: Record<string, unknown>): Promise<McpToolCallResult> {\n    const response = await this.request(\"tools/call\", {\n      name,\n      arguments: args,\n    });\n\n    if (response.error) {\n      return {\n        content: [\n          {\n            type: \"text\",\n            text: JSON.stringify({\n              error: response.error.message,\n              code: response.error.code,\n            }),\n          },\n        ],\n        isError: true,\n      };\n    }\n\n    return response.result as McpToolCallResult;\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * MCP Protocol Types\n * Based on Model Context Protocol specification\n */\n\n// JSON-RPC 2.0 Types\nexport interface JsonRpcRequest {\n  jsonrpc: \"2.0\";\n  id: string | number;\n  method: string;\n  params?: Record<string, unknown>;\n}\n\nexport interface JsonRpcResponse {\n  jsonrpc: \"2.0\";\n  id: string | number | null;\n  result?: unknown;\n  error?: JsonRpcError;\n}\n\nexport interface JsonRpcError {\n  code: number;\n  message: string;\n  data?: unknown;\n}\n\n// MCP Protocol Types\nexport interface McpToolDefinition {\n  name: string;\n  description: string;\n  inputSchema: {\n    type: \"object\";\n    properties?: Record<string, unknown>;\n    required?: string[];\n  };\n}\n\nexport interface McpToolsListResult {\n  tools: McpToolDefinition[];\n}\n\nexport interface McpToolCallParams {\n  name: string;\n  arguments: Record<string, unknown>;\n}\n\nexport interface McpToolCallResult {\n  content: Array<{\n    type: \"text\" | \"image\" | \"resource\";\n    text?: string;\n    data?: string;\n    mimeType?: string;\n  }>;\n  isError?: boolean;\n}\n\n// Server Configuration\nexport interface McpServerConfig {\n  apiKey: string;\n  apiUrl: string;\n  debug: boolean;\n}\n\n// Standard MCP Error Codes\nexport const MCP_ERROR_CODES = {\n  PARSE_ERROR: -32700,\n  INVALID_REQUEST: -32600,\n  METHOD_NOT_FOUND: -32601,\n  INVALID_PARAMS: -32602,\n  INTERNAL_ERROR: -32603,\n} as const;\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\nexport const VERSION = \"0.2.0\";\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly MCP Server\n * Main server class that handles MCP protocol messages\n */\n\nimport { StdioTransport } from \"./transport.js\";\nimport { FhirflyClient } from \"./client.js\";\nimport {\n  MCP_ERROR_CODES,\n  type JsonRpcRequest,\n  type JsonRpcResponse,\n  type McpServerConfig,\n  type McpToolCallParams,\n} from \"./types.js\";\nimport { VERSION } from \"./version.js\";\n\n// Server capabilities\nconst SERVER_INFO = {\n  name: \"fhirfly-mcp-server\",\n  version: VERSION,\n};\n\nconst SERVER_CAPABILITIES = {\n  tools: {},\n};\n\nexport class McpServer {\n  private transport: StdioTransport;\n  private client: FhirflyClient;\n  private config: McpServerConfig;\n  public initialized: boolean = false;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n    this.transport = new StdioTransport(config.debug);\n    this.client = new FhirflyClient(config);\n  }\n\n  /**\n   * Start the MCP server\n   */\n  start(): void {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Starting FHIRfly MCP Server\");\n      console.error(\"[MCP DEBUG] API URL:\", this.config.apiUrl);\n      console.error(\"[MCP DEBUG] API Key:\", this.config.apiKey.slice(0, 10) + \"...\");\n    }\n\n    this.transport.setHandler(this.handleMessage.bind(this));\n    this.transport.start();\n  }\n\n  /**\n   * Handle incoming JSON-RPC messages\n   */\n  private async handleMessage(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      // Validate JSON-RPC request structure\n      if (request.jsonrpc !== \"2.0\" || !request.method) {\n        return {\n          jsonrpc: \"2.0\",\n          id: request.id ?? null,\n          error: {\n            code: MCP_ERROR_CODES.INVALID_REQUEST,\n            message: \"Invalid JSON-RPC request\",\n          },\n        };\n      }\n\n      // Route to appropriate handler\n      switch (request.method) {\n        case \"initialize\":\n          return this.handleInitialize(request);\n\n        case \"initialized\":\n          // Client notification that initialization is complete\n          this.initialized = true;\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            result: {},\n          };\n\n        case \"tools/list\":\n          return this.handleToolsList(request);\n\n        case \"tools/call\":\n          return this.handleToolsCall(request);\n\n        case \"ping\":\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            result: {},\n          };\n\n        default:\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            error: {\n              code: MCP_ERROR_CODES.METHOD_NOT_FOUND,\n              message: `Unknown method: ${request.method}`,\n            },\n          };\n      }\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] Handler error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INTERNAL_ERROR,\n          message: `Internal error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Handle initialize request\n   */\n  private async handleInitialize(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Initialize request from client\");\n    }\n\n    return {\n      jsonrpc: \"2.0\",\n      id: request.id,\n      result: {\n        protocolVersion: \"2024-11-05\",\n        serverInfo: SERVER_INFO,\n        capabilities: SERVER_CAPABILITIES,\n      },\n    };\n  }\n\n  /**\n   * Handle tools/list request\n   */\n  private async handleToolsList(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      const result = await this.client.listTools();\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        result,\n      };\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INTERNAL_ERROR,\n          message: `Failed to list tools: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Handle tools/call request\n   */\n  private async handleToolsCall(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    const params = request.params as McpToolCallParams | undefined;\n\n    if (!params?.name) {\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INVALID_PARAMS,\n          message: \"Missing tool name in params\",\n        },\n      };\n    }\n\n    try {\n      const result = await this.client.callTool(params.name, params.arguments ?? {});\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        result,\n      };\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INTERNAL_ERROR,\n          message: `Tool call failed: ${message}`,\n        },\n      };\n    }\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly MCP Server CLI\n * Entry point for running as an MCP server\n */\n\nimport { McpServer } from \"./server.js\";\nimport { VERSION } from \"./version.js\";\n\n// Handle --version and --help flags (before config validation)\nconst args = process.argv.slice(2);\nif (args.includes(\"--version\") || args.includes(\"-v\")) {\n  console.log(VERSION);\n  process.exit(0);\n}\nif (args.includes(\"--help\") || args.includes(\"-h\")) {\n  console.log(`@fhirfly-io/mcp-server v${VERSION}`);\n  console.log(\"\");\n  console.log(\"MCP server for connecting AI assistants to FHIRfly healthcare data.\");\n  console.log(\"\");\n  console.log(\"Environment variables:\");\n  console.log(\"  FHIRFLY_API_KEY   Your FHIRfly API key (required, starts with ffly_)\");\n  console.log(\"  FHIRFLY_API_URL   API base URL (default: https://api.fhirfly.io)\");\n  console.log(\"  FHIRFLY_DEBUG     Enable debug logging (set to 1 or true)\");\n  console.log(\"\");\n  console.log(\"Usage with Claude Desktop:\");\n  console.log('  npx @fhirfly-io/mcp-server');\n  console.log(\"\");\n  console.log(\"Flags:\");\n  console.log(\"  --version, -v     Show version number\");\n  console.log(\"  --help, -h        Show this help message\");\n  process.exit(0);\n}\n\n// Configuration from environment\nconst API_KEY = process.env.FHIRFLY_API_KEY;\nconst API_URL = process.env.FHIRFLY_API_URL || \"https://api.fhirfly.io\";\nconst DEBUG = process.env.FHIRFLY_DEBUG === \"1\" || process.env.FHIRFLY_DEBUG === \"true\";\n\n// Validate required configuration\nif (!API_KEY) {\n  console.error(\"Error: FHIRFLY_API_KEY environment variable is required\");\n  console.error(\"\");\n  console.error(\"To get an API key:\");\n  console.error(\"  1. Sign up at https://fhirfly.io\");\n  console.error(\"  2. Go to Dashboard > Credentials\");\n  console.error(\"  3. Create an MCP credential\");\n  console.error(\"\");\n  console.error(\"Then set the environment variable:\");\n  console.error('  export FHIRFLY_API_KEY=\"your_api_key_here\"');\n  console.error(\"\");\n  console.error(\"Or configure in Claude Desktop's claude_desktop_config.json\");\n  process.exit(1);\n}\n\n// Validate API key format\nif (!API_KEY.startsWith(\"ffly_\")) {\n  console.error(\"Error: Invalid API key format\");\n  console.error(\"FHIRfly API keys start with 'ffly_'\");\n  console.error(\"\");\n  console.error(\"Please check your FHIRFLY_API_KEY environment variable.\");\n  process.exit(1);\n}\n\nif (DEBUG) {\n  console.error(\"=\".repeat(50));\n  console.error(\"FHIRfly MCP Server - Debug Mode\");\n  console.error(\"=\".repeat(50));\n  console.error(\"API URL:\", API_URL);\n  console.error(\"API Key:\", API_KEY.slice(0, 10) + \"...\");\n  console.error(\"=\".repeat(50));\n}\n\n// Create and start server\nconst server = new McpServer({\n  apiKey: API_KEY,\n  apiUrl: API_URL,\n  debug: DEBUG,\n});\n\nserver.start();\n"]}

package/dist/index.cjs

@@ -105,6 +105,7 @@ var StdioTransport = class {
 // src/client.ts
 var FhirflyClient = class {
   config;
+  nextId = 1;
   constructor(config) {
     this.config = config;
   }
@@ -114,7 +115,7 @@ var FhirflyClient = class {
   async request(method, params) {
     const requestBody = {
       jsonrpc: "2.0",
-      id: Date.now(),
+      id: this.nextId++,
       method,
       params
     };
@@ -143,14 +144,36 @@ var FhirflyClient = class {
           };
         }
         if (response.status === 429) {
-          return {
-            jsonrpc: "2.0",
-            id: requestBody.id,
-            error: {
-              code: -32002,
-              message: "Rate limit exceeded. Please slow down requests."
-            }
-          };
+          const retryAfter = response.headers.get("Retry-After");
+          const delaySec = Math.min(Number(retryAfter) || 1, 10);
+          if (this.config.debug) {
+            console.error(`[MCP DEBUG] Rate limited, retrying after ${delaySec}s`);
+          }
+          await new Promise((resolve) => setTimeout(resolve, delaySec * 1e3));
+          const retryResponse = await fetch(`${this.config.apiUrl}/mcp`, {
+            method: "POST",
+            headers: {
+              "Content-Type": "application/json",
+              "x-api-key": this.config.apiKey,
+              "User-Agent": "@fhirfly-io/mcp-server"
+            },
+            body: JSON.stringify(requestBody)
+          });
+          if (!retryResponse.ok) {
+            return {
+              jsonrpc: "2.0",
+              id: requestBody.id,
+              error: {
+                code: -32002,
+                message: "Rate limit exceeded. Please slow down requests."
+              }
+            };
+          }
+          const retryResult = await retryResponse.json();
+          if (this.config.debug) {
+            console.error("[MCP DEBUG] Retry response:", JSON.stringify(retryResult, null, 2));
+          }
+          return retryResult;
         }
         return {
           jsonrpc: "2.0",
@@ -217,17 +240,22 @@ var FhirflyClient = class {
   }
 };
 
-// src/server.ts
-var MCP_ERRORS = {
+// src/types.ts
+var MCP_ERROR_CODES = {
   PARSE_ERROR: -32700,
   INVALID_REQUEST: -32600,
   METHOD_NOT_FOUND: -32601,
   INVALID_PARAMS: -32602,
   INTERNAL_ERROR: -32603
 };
+
+// src/version.ts
+var VERSION = "0.2.0";
+
+// src/server.ts
 var SERVER_INFO = {
   name: "fhirfly-mcp-server",
-  version: "0.1.0"
+  version: VERSION
 };
 var SERVER_CAPABILITIES = {
   tools: {}
@@ -264,7 +292,7 @@ var McpServer = class {
           jsonrpc: "2.0",
           id: request.id ?? null,
           error: {
-            code: MCP_ERRORS.INVALID_REQUEST,
+            code: MCP_ERROR_CODES.INVALID_REQUEST,
             message: "Invalid JSON-RPC request"
           }
         };
@@ -294,7 +322,7 @@ var McpServer = class {
             jsonrpc: "2.0",
             id: request.id,
             error: {
-              code: MCP_ERRORS.METHOD_NOT_FOUND,
+              code: MCP_ERROR_CODES.METHOD_NOT_FOUND,
               message: `Unknown method: ${request.method}`
             }
           };
@@ -308,7 +336,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INTERNAL_ERROR,
+          code: MCP_ERROR_CODES.INTERNAL_ERROR,
           message: `Internal error: ${message}`
         }
       };
@@ -348,7 +376,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INTERNAL_ERROR,
+          code: MCP_ERROR_CODES.INTERNAL_ERROR,
           message: `Failed to list tools: ${message}`
         }
       };
@@ -364,7 +392,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INVALID_PARAMS,
+          code: MCP_ERROR_CODES.INVALID_PARAMS,
           message: "Missing tool name in params"
         }
       };
@@ -382,7 +410,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INTERNAL_ERROR,
+          code: MCP_ERROR_CODES.INTERNAL_ERROR,
           message: `Tool call failed: ${message}`
         }
       };
@@ -393,5 +421,6 @@ var McpServer = class {
 exports.FhirflyClient = FhirflyClient;
 exports.McpServer = McpServer;
 exports.StdioTransport = StdioTransport;
+exports.VERSION = VERSION;
 //# sourceMappingURL=index.cjs.map
 //# sourceMappingURL=index.cjs.map

package/dist/index.cjs.map

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Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * MCP Stdio Transport\n * Handles JSON-RPC communication over stdin/stdout\n */\n\nimport { createInterface } from \"readline\";\nimport type { JsonRpcRequest, JsonRpcResponse } from \"./types.js\";\n\nexport type MessageHandler = (request: JsonRpcRequest) => Promise<JsonRpcResponse>;\n\nexport class StdioTransport {\n  private handler: MessageHandler | null = null;\n  private debug: boolean;\n  private pendingRequests: number = 0;\n  private stdinClosed: boolean = false;\n\n  constructor(debug: boolean = false) {\n    this.debug = debug;\n  }\n\n  /**\n   * Set the handler for incoming messages\n   */\n  setHandler(handler: MessageHandler): void {\n    this.handler = handler;\n  }\n\n  /**\n   * Start listening for messages on stdin\n   */\n  start(): void {\n    const rl = createInterface({\n      input: process.stdin,\n      output: process.stdout,\n      terminal: false,\n    });\n\n    // Buffer for accumulating partial messages\n    let buffer = \"\";\n\n    rl.on(\"line\", async (line) => {\n      buffer += line;\n\n      // Try to parse as JSON\n      try {\n        const request = JSON.parse(buffer) as JsonRpcRequest;\n        buffer = \"\"; // Clear buffer on successful parse\n\n        if (this.debug) {\n          console.error(\"[MCP DEBUG] Received:\", JSON.stringify(request, null, 2));\n        }\n\n        if (this.handler) {\n          this.pendingRequests++;\n          try {\n            const response = await this.handler(request);\n            this.send(response);\n          } finally {\n            this.pendingRequests--;\n            this.maybeExit();\n          }\n        }\n      } catch {\n        // If parse fails, might be partial message - keep buffering\n        // Unless it looks like a complete but invalid message\n        if (line.trim().endsWith(\"}\")) {\n          this.sendError(null, -32700, \"Parse error: Invalid JSON\");\n          buffer = \"\";\n        }\n      }\n    });\n\n    rl.on(\"close\", () => {\n      this.stdinClosed = true;\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin closed, waiting for pending requests...\");\n      }\n      this.maybeExit();\n    });\n\n    // Handle errors gracefully\n    process.stdin.on(\"error\", (err) => {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin error:\", err.message);\n      }\n    });\n  }\n\n  /**\n   * Exit if stdin is closed and no pending requests\n   */\n  private maybeExit(): void {\n    if (this.stdinClosed && this.pendingRequests === 0) {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] All requests complete, exiting\");\n      }\n      process.exit(0);\n    }\n  }\n\n  /**\n   * Send a JSON-RPC response to stdout\n   */\n  send(response: JsonRpcResponse): void {\n    const message = JSON.stringify(response);\n\n    if (this.debug) {\n      console.error(\"[MCP DEBUG] Sending:\", JSON.stringify(response, null, 2));\n    }\n\n    // Write to stdout with newline\n    process.stdout.write(message + \"\\n\");\n  }\n\n  /**\n   * Send an error response\n   */\n  sendError(id: string | number | null, code: number, message: string, data?: unknown): void {\n    this.send({\n      jsonrpc: \"2.0\",\n      id,\n      error: {\n        code,\n        message,\n        data,\n      },\n    });\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. 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Check your FHIRFLY_API_KEY.\",\n            },\n          };\n        }\n\n        if (response.status === 429) {\n          return {\n            jsonrpc: \"2.0\",\n            id: requestBody.id,\n            error: {\n              code: -32002,\n              message: \"Rate limit exceeded. Please slow down requests.\",\n            },\n          };\n        }\n\n        return {\n          jsonrpc: \"2.0\",\n          id: requestBody.id,\n          error: {\n            code: -32000,\n            message: `API error: ${response.status} ${response.statusText}`,\n          },\n        };\n      }\n\n      const result = (await response.json()) as JsonRpcResponse;\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Response:\", JSON.stringify(result, null, 2));\n      }\n\n      return result;\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: requestBody.id,\n        error: {\n          code: -32003,\n          message: `Network error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Get list of available tools from FHIRfly\n   */\n  async listTools(): Promise<McpToolsListResult> {\n    const response = await this.request(\"tools/list\", {});\n\n    if (response.error) {\n      throw new Error(response.error.message);\n    }\n\n    return response.result as McpToolsListResult;\n  }\n\n  /**\n   * Call a tool on the FHIRfly API\n   */\n  async callTool(name: string, args: Record<string, unknown>): Promise<McpToolCallResult> {\n    const response = await this.request(\"tools/call\", {\n      name,\n      arguments: args,\n    });\n\n    if (response.error) {\n      return {\n        content: [\n          {\n            type: \"text\",\n            text: JSON.stringify({\n              error: response.error.message,\n              code: response.error.code,\n            }),\n          },\n        ],\n        isError: true,\n      };\n    }\n\n    return response.result as McpToolCallResult;\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly MCP Server\n * Main server class that handles MCP protocol messages\n */\n\nimport { StdioTransport } from \"./transport.js\";\nimport { FhirflyClient } from \"./client.js\";\nimport type {\n  JsonRpcRequest,\n  JsonRpcResponse,\n  McpServerConfig,\n  McpToolCallParams,\n} from \"./types.js\";\n\nconst MCP_ERRORS = {\n  PARSE_ERROR: -32700,\n  INVALID_REQUEST: -32600,\n  METHOD_NOT_FOUND: -32601,\n  INVALID_PARAMS: -32602,\n  INTERNAL_ERROR: -32603,\n} as const;\n\n// Server capabilities\nconst SERVER_INFO = {\n  name: \"fhirfly-mcp-server\",\n  version: \"0.1.0\",\n};\n\nconst SERVER_CAPABILITIES = {\n  tools: {},\n};\n\nexport class McpServer {\n  private transport: StdioTransport;\n  private client: FhirflyClient;\n  private config: McpServerConfig;\n  public initialized: boolean = false;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n    this.transport = new StdioTransport(config.debug);\n    this.client = new FhirflyClient(config);\n  }\n\n  /**\n   * Start the MCP server\n   */\n  start(): void {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Starting FHIRfly MCP Server\");\n      console.error(\"[MCP DEBUG] API URL:\", this.config.apiUrl);\n      console.error(\"[MCP DEBUG] API Key:\", this.config.apiKey.slice(0, 10) + \"...\");\n    }\n\n    this.transport.setHandler(this.handleMessage.bind(this));\n    this.transport.start();\n  }\n\n  /**\n   * Handle incoming JSON-RPC messages\n   */\n  private async handleMessage(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      // Validate JSON-RPC request structure\n      if (request.jsonrpc !== \"2.0\" || !request.method) {\n        return {\n          jsonrpc: \"2.0\",\n          id: request.id ?? 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Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * MCP Stdio Transport\n * Handles JSON-RPC communication over stdin/stdout\n */\n\nimport { createInterface } from \"readline\";\nimport type { JsonRpcRequest, JsonRpcResponse } from \"./types.js\";\n\nexport type MessageHandler = (request: JsonRpcRequest) => Promise<JsonRpcResponse>;\n\nexport class StdioTransport {\n  private handler: MessageHandler | null = null;\n  private debug: boolean;\n  private pendingRequests: number = 0;\n  private stdinClosed: boolean = false;\n\n  constructor(debug: boolean = false) {\n    this.debug = debug;\n  }\n\n  /**\n   * Set the handler for incoming messages\n   */\n  setHandler(handler: MessageHandler): void {\n    this.handler = handler;\n  }\n\n  /**\n   * Start listening for messages on stdin\n   */\n  start(): void {\n    const rl = createInterface({\n      input: process.stdin,\n      output: process.stdout,\n      terminal: false,\n    });\n\n    // Buffer for accumulating partial messages\n    let buffer = \"\";\n\n    rl.on(\"line\", async (line) => {\n      buffer += line;\n\n      // Try to parse as JSON\n      try {\n        const request = JSON.parse(buffer) as JsonRpcRequest;\n        buffer = \"\"; // Clear buffer on successful parse\n\n        if (this.debug) {\n          console.error(\"[MCP DEBUG] Received:\", JSON.stringify(request, null, 2));\n        }\n\n        if (this.handler) {\n          this.pendingRequests++;\n          try {\n            const response = await this.handler(request);\n            this.send(response);\n          } finally {\n            this.pendingRequests--;\n            this.maybeExit();\n          }\n        }\n      } catch {\n        // If parse fails, might be partial message - keep buffering\n        // Unless it looks like a complete but invalid message\n        if (line.trim().endsWith(\"}\")) {\n          this.sendError(null, -32700, \"Parse error: Invalid JSON\");\n          buffer = \"\";\n        }\n      }\n    });\n\n    rl.on(\"close\", () => {\n      this.stdinClosed = true;\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin closed, waiting for pending requests...\");\n      }\n      this.maybeExit();\n    });\n\n    // Handle errors gracefully\n    process.stdin.on(\"error\", (err) => {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin error:\", err.message);\n      }\n    });\n  }\n\n  /**\n   * Exit if stdin is closed and no pending requests\n   */\n  private maybeExit(): void {\n    if (this.stdinClosed && this.pendingRequests === 0) {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] All requests complete, exiting\");\n      }\n      process.exit(0);\n    }\n  }\n\n  /**\n   * Send a JSON-RPC response to stdout\n   */\n  send(response: JsonRpcResponse): void {\n    const message = JSON.stringify(response);\n\n    if (this.debug) {\n      console.error(\"[MCP DEBUG] Sending:\", JSON.stringify(response, null, 2));\n    }\n\n    // Write to stdout with newline\n    process.stdout.write(message + \"\\n\");\n  }\n\n  /**\n   * Send an error response\n   */\n  sendError(id: string | number | null, code: number, message: string, data?: unknown): void {\n    this.send({\n      jsonrpc: \"2.0\",\n      id,\n      error: {\n        code,\n        message,\n        data,\n      },\n    });\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly API Client\n * Makes HTTP requests to the FHIRfly MCP endpoint\n */\n\nimport type {\n  JsonRpcRequest,\n  JsonRpcResponse,\n  McpServerConfig,\n  McpToolsListResult,\n  McpToolCallResult,\n} from \"./types.js\";\n\nexport class FhirflyClient {\n  private config: McpServerConfig;\n  private nextId = 1;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n  }\n\n  /**\n   * Send a JSON-RPC request to the FHIRfly MCP endpoint\n   */\n  async request(method: string, params?: Record<string, unknown>): Promise<JsonRpcResponse> {\n    const requestBody: JsonRpcRequest = {\n      jsonrpc: \"2.0\",\n      id: this.nextId++,\n      method,\n      params,\n    };\n\n    if (this.config.debug) {\n      console.error(`[MCP DEBUG] API Request: ${method}`, params);\n    }\n\n    try {\n      const response = await fetch(`${this.config.apiUrl}/mcp`, {\n        method: \"POST\",\n        headers: {\n          \"Content-Type\": \"application/json\",\n          \"x-api-key\": this.config.apiKey,\n          \"User-Agent\": \"@fhirfly-io/mcp-server\",\n        },\n        body: JSON.stringify(requestBody),\n      });\n\n      if (!response.ok) {\n        // Handle HTTP errors\n        if (response.status === 401) {\n          return {\n            jsonrpc: \"2.0\",\n            id: requestBody.id,\n            error: {\n              code: -32001,\n              message: \"Authentication failed. Check your FHIRFLY_API_KEY.\",\n            },\n          };\n        }\n\n        if (response.status === 429) {\n          // Retry once after Retry-After delay (cap at 10s)\n          const retryAfter = response.headers.get(\"Retry-After\");\n          const delaySec = Math.min(Number(retryAfter) || 1, 10);\n\n          if (this.config.debug) {\n            console.error(`[MCP DEBUG] Rate limited, retrying after ${delaySec}s`);\n          }\n\n          await new Promise((resolve) => setTimeout(resolve, delaySec * 1000));\n\n          const retryResponse = await fetch(`${this.config.apiUrl}/mcp`, {\n            method: \"POST\",\n            headers: {\n              \"Content-Type\": \"application/json\",\n              \"x-api-key\": this.config.apiKey,\n              \"User-Agent\": \"@fhirfly-io/mcp-server\",\n            },\n            body: JSON.stringify(requestBody),\n          });\n\n          if (!retryResponse.ok) {\n            return {\n              jsonrpc: \"2.0\",\n              id: requestBody.id,\n              error: {\n                code: -32002,\n                message: \"Rate limit exceeded. Please slow down requests.\",\n              },\n            };\n          }\n\n          const retryResult = (await retryResponse.json()) as JsonRpcResponse;\n\n          if (this.config.debug) {\n            console.error(\"[MCP DEBUG] Retry response:\", JSON.stringify(retryResult, null, 2));\n          }\n\n          return retryResult;\n        }\n\n        return {\n          jsonrpc: \"2.0\",\n          id: requestBody.id,\n          error: {\n            code: -32000,\n            message: `API error: ${response.status} ${response.statusText}`,\n          },\n        };\n      }\n\n      const result = (await response.json()) as JsonRpcResponse;\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Response:\", JSON.stringify(result, null, 2));\n      }\n\n      return result;\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: requestBody.id,\n        error: {\n          code: -32003,\n          message: `Network error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Get list of available tools from FHIRfly\n   */\n  async listTools(): Promise<McpToolsListResult> {\n    const response = await this.request(\"tools/list\", {});\n\n    if (response.error) {\n      throw new Error(response.error.message);\n    }\n\n    return response.result as McpToolsListResult;\n  }\n\n  /**\n   * Call a tool on the FHIRfly API\n   */\n  async callTool(name: string, args: Record<string, unknown>): Promise<McpToolCallResult> {\n    const response = await this.request(\"tools/call\", {\n      name,\n      arguments: args,\n    });\n\n    if (response.error) {\n      return {\n        content: [\n          {\n            type: \"text\",\n            text: JSON.stringify({\n              error: response.error.message,\n              code: response.error.code,\n            }),\n          },\n        ],\n        isError: true,\n      };\n    }\n\n    return response.result as McpToolCallResult;\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * MCP Protocol Types\n * Based on Model Context Protocol specification\n */\n\n// JSON-RPC 2.0 Types\nexport interface JsonRpcRequest {\n  jsonrpc: \"2.0\";\n  id: string | number;\n  method: string;\n  params?: Record<string, unknown>;\n}\n\nexport interface JsonRpcResponse {\n  jsonrpc: \"2.0\";\n  id: string | number | null;\n  result?: unknown;\n  error?: JsonRpcError;\n}\n\nexport interface JsonRpcError {\n  code: number;\n  message: string;\n  data?: unknown;\n}\n\n// MCP Protocol Types\nexport interface McpToolDefinition {\n  name: string;\n  description: string;\n  inputSchema: {\n    type: \"object\";\n    properties?: Record<string, unknown>;\n    required?: string[];\n  };\n}\n\nexport interface McpToolsListResult {\n  tools: McpToolDefinition[];\n}\n\nexport interface McpToolCallParams {\n  name: string;\n  arguments: Record<string, unknown>;\n}\n\nexport interface McpToolCallResult {\n  content: Array<{\n    type: \"text\" | \"image\" | \"resource\";\n    text?: string;\n    data?: string;\n    mimeType?: string;\n  }>;\n  isError?: boolean;\n}\n\n// Server Configuration\nexport interface McpServerConfig {\n  apiKey: string;\n  apiUrl: string;\n  debug: boolean;\n}\n\n// Standard MCP Error Codes\nexport const MCP_ERROR_CODES = {\n  PARSE_ERROR: -32700,\n  INVALID_REQUEST: -32600,\n  METHOD_NOT_FOUND: -32601,\n  INVALID_PARAMS: -32602,\n  INTERNAL_ERROR: -32603,\n} as const;\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\nexport const VERSION = \"0.2.0\";\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly MCP Server\n * Main server class that handles MCP protocol messages\n */\n\nimport { StdioTransport } from \"./transport.js\";\nimport { FhirflyClient } from \"./client.js\";\nimport {\n  MCP_ERROR_CODES,\n  type JsonRpcRequest,\n  type JsonRpcResponse,\n  type McpServerConfig,\n  type McpToolCallParams,\n} from \"./types.js\";\nimport { VERSION } from \"./version.js\";\n\n// Server capabilities\nconst SERVER_INFO = {\n  name: \"fhirfly-mcp-server\",\n  version: VERSION,\n};\n\nconst SERVER_CAPABILITIES = {\n  tools: {},\n};\n\nexport class McpServer {\n  private transport: StdioTransport;\n  private client: FhirflyClient;\n  private config: McpServerConfig;\n  public initialized: boolean = false;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n    this.transport = new StdioTransport(config.debug);\n    this.client = new FhirflyClient(config);\n  }\n\n  /**\n   * Start the MCP server\n   */\n  start(): void {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Starting FHIRfly MCP Server\");\n      console.error(\"[MCP DEBUG] API URL:\", this.config.apiUrl);\n      console.error(\"[MCP DEBUG] API Key:\", this.config.apiKey.slice(0, 10) + \"...\");\n    }\n\n    this.transport.setHandler(this.handleMessage.bind(this));\n    this.transport.start();\n  }\n\n  /**\n   * Handle incoming JSON-RPC messages\n   */\n  private async handleMessage(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      // Validate JSON-RPC request structure\n      if (request.jsonrpc !== \"2.0\" || !request.method) {\n        return {\n          jsonrpc: \"2.0\",\n          id: request.id ?? null,\n          error: {\n            code: MCP_ERROR_CODES.INVALID_REQUEST,\n            message: \"Invalid JSON-RPC request\",\n          },\n        };\n      }\n\n      // Route to appropriate handler\n      switch (request.method) {\n        case \"initialize\":\n          return this.handleInitialize(request);\n\n        case \"initialized\":\n          // Client notification that initialization is complete\n          this.initialized = true;\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            result: {},\n          };\n\n        case \"tools/list\":\n          return this.handleToolsList(request);\n\n        case \"tools/call\":\n          return this.handleToolsCall(request);\n\n        case \"ping\":\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            result: {},\n          };\n\n        default:\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            error: {\n              code: MCP_ERROR_CODES.METHOD_NOT_FOUND,\n              message: `Unknown method: ${request.method}`,\n            },\n          };\n      }\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] Handler error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INTERNAL_ERROR,\n          message: `Internal error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Handle initialize request\n   */\n  private async handleInitialize(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Initialize request from client\");\n    }\n\n    return {\n      jsonrpc: \"2.0\",\n      id: request.id,\n      result: {\n        protocolVersion: \"2024-11-05\",\n        serverInfo: SERVER_INFO,\n        capabilities: SERVER_CAPABILITIES,\n      },\n    };\n  }\n\n  /**\n   * Handle tools/list request\n   */\n  private async handleToolsList(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      const result = await this.client.listTools();\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        result,\n      };\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INTERNAL_ERROR,\n          message: `Failed to list tools: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Handle tools/call request\n   */\n  private async handleToolsCall(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    const params = request.params as McpToolCallParams | undefined;\n\n    if (!params?.name) {\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INVALID_PARAMS,\n          message: \"Missing tool name in params\",\n        },\n      };\n    }\n\n    try {\n      const result = await this.client.callTool(params.name, params.arguments ?? {});\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        result,\n      };\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INTERNAL_ERROR,\n          message: `Tool call failed: ${message}`,\n        },\n      };\n    }\n  }\n}\n"]}

package/dist/index.d.cts

@@ -90,6 +90,7 @@ declare class McpServer {
 
 declare class FhirflyClient {
     private config;
+    private nextId;
     constructor(config: McpServerConfig);
     /**
      * Send a JSON-RPC request to the FHIRfly MCP endpoint
@@ -139,4 +140,6 @@ declare class StdioTransport {
     sendError(id: string | number | null, code: number, message: string, data?: unknown): void;
 }
 
-export { FhirflyClient, type JsonRpcError, type JsonRpcRequest, type JsonRpcResponse, McpServer, type McpServerConfig, type McpToolCallParams, type McpToolCallResult, type McpToolDefinition, type McpToolsListResult, StdioTransport };
+declare const VERSION = "0.2.0";
+
+export { FhirflyClient, type JsonRpcError, type JsonRpcRequest, type JsonRpcResponse, McpServer, type McpServerConfig, type McpToolCallParams, type McpToolCallResult, type McpToolDefinition, type McpToolsListResult, StdioTransport, VERSION };

package/dist/index.d.ts

@@ -90,6 +90,7 @@ declare class McpServer {
 
 declare class FhirflyClient {
     private config;
+    private nextId;
     constructor(config: McpServerConfig);
     /**
      * Send a JSON-RPC request to the FHIRfly MCP endpoint
@@ -139,4 +140,6 @@ declare class StdioTransport {
     sendError(id: string | number | null, code: number, message: string, data?: unknown): void;
 }
 
-export { FhirflyClient, type JsonRpcError, type JsonRpcRequest, type JsonRpcResponse, McpServer, type McpServerConfig, type McpToolCallParams, type McpToolCallResult, type McpToolDefinition, type McpToolsListResult, StdioTransport };
+declare const VERSION = "0.2.0";
+
+export { FhirflyClient, type JsonRpcError, type JsonRpcRequest, type JsonRpcResponse, McpServer, type McpServerConfig, type McpToolCallParams, type McpToolCallResult, type McpToolDefinition, type McpToolsListResult, StdioTransport, VERSION };

package/dist/index.js

@@ -103,6 +103,7 @@ var StdioTransport = class {
 // src/client.ts
 var FhirflyClient = class {
   config;
+  nextId = 1;
   constructor(config) {
     this.config = config;
   }
@@ -112,7 +113,7 @@ var FhirflyClient = class {
   async request(method, params) {
     const requestBody = {
       jsonrpc: "2.0",
-      id: Date.now(),
+      id: this.nextId++,
       method,
       params
     };
@@ -141,14 +142,36 @@ var FhirflyClient = class {
           };
         }
         if (response.status === 429) {
-          return {
-            jsonrpc: "2.0",
-            id: requestBody.id,
-            error: {
-              code: -32002,
-              message: "Rate limit exceeded. Please slow down requests."
-            }
-          };
+          const retryAfter = response.headers.get("Retry-After");
+          const delaySec = Math.min(Number(retryAfter) || 1, 10);
+          if (this.config.debug) {
+            console.error(`[MCP DEBUG] Rate limited, retrying after ${delaySec}s`);
+          }
+          await new Promise((resolve) => setTimeout(resolve, delaySec * 1e3));
+          const retryResponse = await fetch(`${this.config.apiUrl}/mcp`, {
+            method: "POST",
+            headers: {
+              "Content-Type": "application/json",
+              "x-api-key": this.config.apiKey,
+              "User-Agent": "@fhirfly-io/mcp-server"
+            },
+            body: JSON.stringify(requestBody)
+          });
+          if (!retryResponse.ok) {
+            return {
+              jsonrpc: "2.0",
+              id: requestBody.id,
+              error: {
+                code: -32002,
+                message: "Rate limit exceeded. Please slow down requests."
+              }
+            };
+          }
+          const retryResult = await retryResponse.json();
+          if (this.config.debug) {
+            console.error("[MCP DEBUG] Retry response:", JSON.stringify(retryResult, null, 2));
+          }
+          return retryResult;
         }
         return {
           jsonrpc: "2.0",
@@ -215,17 +238,22 @@ var FhirflyClient = class {
   }
 };
 
-// src/server.ts
-var MCP_ERRORS = {
+// src/types.ts
+var MCP_ERROR_CODES = {
   PARSE_ERROR: -32700,
   INVALID_REQUEST: -32600,
   METHOD_NOT_FOUND: -32601,
   INVALID_PARAMS: -32602,
   INTERNAL_ERROR: -32603
 };
+
+// src/version.ts
+var VERSION = "0.2.0";
+
+// src/server.ts
 var SERVER_INFO = {
   name: "fhirfly-mcp-server",
-  version: "0.1.0"
+  version: VERSION
 };
 var SERVER_CAPABILITIES = {
   tools: {}
@@ -262,7 +290,7 @@ var McpServer = class {
           jsonrpc: "2.0",
           id: request.id ?? null,
           error: {
-            code: MCP_ERRORS.INVALID_REQUEST,
+            code: MCP_ERROR_CODES.INVALID_REQUEST,
             message: "Invalid JSON-RPC request"
           }
         };
@@ -292,7 +320,7 @@ var McpServer = class {
             jsonrpc: "2.0",
             id: request.id,
             error: {
-              code: MCP_ERRORS.METHOD_NOT_FOUND,
+              code: MCP_ERROR_CODES.METHOD_NOT_FOUND,
               message: `Unknown method: ${request.method}`
             }
           };
@@ -306,7 +334,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INTERNAL_ERROR,
+          code: MCP_ERROR_CODES.INTERNAL_ERROR,
           message: `Internal error: ${message}`
         }
       };
@@ -346,7 +374,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INTERNAL_ERROR,
+          code: MCP_ERROR_CODES.INTERNAL_ERROR,
           message: `Failed to list tools: ${message}`
         }
       };
@@ -362,7 +390,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INVALID_PARAMS,
+          code: MCP_ERROR_CODES.INVALID_PARAMS,
           message: "Missing tool name in params"
         }
       };
@@ -380,7 +408,7 @@ var McpServer = class {
         jsonrpc: "2.0",
         id: request.id,
         error: {
-          code: MCP_ERRORS.INTERNAL_ERROR,
+          code: MCP_ERROR_CODES.INTERNAL_ERROR,
           message: `Tool call failed: ${message}`
         }
       };
@@ -388,6 +416,6 @@ var McpServer = class {
   }
 };
 
-export { FhirflyClient, McpServer, StdioTransport };
+export { FhirflyClient, McpServer, StdioTransport, VERSION };
 //# sourceMappingURL=index.js.map
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * MCP Stdio Transport\n * Handles JSON-RPC communication over stdin/stdout\n */\n\nimport { createInterface } from \"readline\";\nimport type { JsonRpcRequest, JsonRpcResponse } from \"./types.js\";\n\nexport type MessageHandler = (request: JsonRpcRequest) => Promise<JsonRpcResponse>;\n\nexport class StdioTransport {\n  private handler: MessageHandler | null = null;\n  private debug: boolean;\n  private pendingRequests: number = 0;\n  private stdinClosed: boolean = false;\n\n  constructor(debug: boolean = false) {\n    this.debug = debug;\n  }\n\n  /**\n   * Set the handler for incoming messages\n   */\n  setHandler(handler: MessageHandler): void {\n    this.handler = handler;\n  }\n\n  /**\n   * Start listening for messages on stdin\n   */\n  start(): void {\n    const rl = createInterface({\n      input: process.stdin,\n      output: process.stdout,\n      terminal: false,\n    });\n\n    // Buffer for accumulating partial messages\n    let buffer = \"\";\n\n    rl.on(\"line\", async (line) => {\n      buffer += line;\n\n      // Try to parse as JSON\n      try {\n        const request = JSON.parse(buffer) as JsonRpcRequest;\n        buffer = \"\"; // Clear buffer on successful parse\n\n        if (this.debug) {\n          console.error(\"[MCP DEBUG] Received:\", JSON.stringify(request, null, 2));\n        }\n\n        if (this.handler) {\n          this.pendingRequests++;\n          try {\n            const response = await this.handler(request);\n            this.send(response);\n          } finally {\n            this.pendingRequests--;\n            this.maybeExit();\n          }\n        }\n      } catch {\n        // If parse fails, might be partial message - keep buffering\n        // Unless it looks like a complete but invalid message\n        if (line.trim().endsWith(\"}\")) {\n          this.sendError(null, -32700, \"Parse error: Invalid JSON\");\n          buffer = \"\";\n        }\n      }\n    });\n\n    rl.on(\"close\", () => {\n      this.stdinClosed = true;\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin closed, waiting for pending requests...\");\n      }\n      this.maybeExit();\n    });\n\n    // Handle errors gracefully\n    process.stdin.on(\"error\", (err) => {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin error:\", err.message);\n      }\n    });\n  }\n\n  /**\n   * Exit if stdin is closed and no pending requests\n   */\n  private maybeExit(): void {\n    if (this.stdinClosed && this.pendingRequests === 0) {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] All requests complete, exiting\");\n      }\n      process.exit(0);\n    }\n  }\n\n  /**\n   * Send a JSON-RPC response to stdout\n   */\n  send(response: JsonRpcResponse): void {\n    const message = JSON.stringify(response);\n\n    if (this.debug) {\n      console.error(\"[MCP DEBUG] Sending:\", JSON.stringify(response, null, 2));\n    }\n\n    // Write to stdout with newline\n    process.stdout.write(message + \"\\n\");\n  }\n\n  /**\n   * Send an error response\n   */\n  sendError(id: string | number | null, code: number, message: string, data?: unknown): void {\n    this.send({\n      jsonrpc: \"2.0\",\n      id,\n      error: {\n        code,\n        message,\n        data,\n      },\n    });\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. 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Please slow down requests.\",\n            },\n          };\n        }\n\n        return {\n          jsonrpc: \"2.0\",\n          id: requestBody.id,\n          error: {\n            code: -32000,\n            message: `API error: ${response.status} ${response.statusText}`,\n          },\n        };\n      }\n\n      const result = (await response.json()) as JsonRpcResponse;\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Response:\", JSON.stringify(result, null, 2));\n      }\n\n      return result;\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: requestBody.id,\n        error: {\n          code: -32003,\n          message: `Network error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Get list of available tools from FHIRfly\n   */\n  async listTools(): Promise<McpToolsListResult> {\n    const response = await this.request(\"tools/list\", {});\n\n    if (response.error) {\n      throw new Error(response.error.message);\n    }\n\n    return response.result as McpToolsListResult;\n  }\n\n  /**\n   * Call a tool on the FHIRfly API\n   */\n  async callTool(name: string, args: Record<string, unknown>): Promise<McpToolCallResult> {\n    const response = await this.request(\"tools/call\", {\n      name,\n      arguments: args,\n    });\n\n    if (response.error) {\n      return {\n        content: [\n          {\n            type: \"text\",\n            text: JSON.stringify({\n              error: response.error.message,\n              code: response.error.code,\n            }),\n          },\n        ],\n        isError: true,\n      };\n    }\n\n    return response.result as McpToolCallResult;\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly MCP Server\n * Main server class that handles MCP protocol messages\n */\n\nimport { StdioTransport } from \"./transport.js\";\nimport { FhirflyClient } from \"./client.js\";\nimport type {\n  JsonRpcRequest,\n  JsonRpcResponse,\n  McpServerConfig,\n  McpToolCallParams,\n} from \"./types.js\";\n\nconst MCP_ERRORS = {\n  PARSE_ERROR: -32700,\n  INVALID_REQUEST: -32600,\n  METHOD_NOT_FOUND: -32601,\n  INVALID_PARAMS: -32602,\n  INTERNAL_ERROR: -32603,\n} as const;\n\n// Server capabilities\nconst SERVER_INFO = {\n  name: \"fhirfly-mcp-server\",\n  version: \"0.1.0\",\n};\n\nconst SERVER_CAPABILITIES = {\n  tools: {},\n};\n\nexport class McpServer {\n  private transport: StdioTransport;\n  private client: FhirflyClient;\n  private config: McpServerConfig;\n  public initialized: boolean = false;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n    this.transport = new StdioTransport(config.debug);\n    this.client = new FhirflyClient(config);\n  }\n\n  /**\n   * Start the MCP server\n   */\n  start(): void {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Starting FHIRfly MCP Server\");\n      console.error(\"[MCP DEBUG] API URL:\", this.config.apiUrl);\n      console.error(\"[MCP DEBUG] API Key:\", this.config.apiKey.slice(0, 10) + \"...\");\n    }\n\n    this.transport.setHandler(this.handleMessage.bind(this));\n    this.transport.start();\n  }\n\n  /**\n   * Handle incoming JSON-RPC messages\n   */\n  private async handleMessage(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      // Validate JSON-RPC request structure\n      if (request.jsonrpc !== \"2.0\" || !request.method) {\n        return {\n          jsonrpc: \"2.0\",\n          id: request.id ?? 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All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * MCP Stdio Transport\n * Handles JSON-RPC communication over stdin/stdout\n */\n\nimport { createInterface } from \"readline\";\nimport type { JsonRpcRequest, JsonRpcResponse } from \"./types.js\";\n\nexport type MessageHandler = (request: JsonRpcRequest) => Promise<JsonRpcResponse>;\n\nexport class StdioTransport {\n  private handler: MessageHandler | null = null;\n  private debug: boolean;\n  private pendingRequests: number = 0;\n  private stdinClosed: boolean = false;\n\n  constructor(debug: boolean = false) {\n    this.debug = debug;\n  }\n\n  /**\n   * Set the handler for incoming messages\n   */\n  setHandler(handler: MessageHandler): void {\n    this.handler = handler;\n  }\n\n  /**\n   * Start listening for messages on stdin\n   */\n  start(): void {\n    const rl = createInterface({\n      input: process.stdin,\n      output: process.stdout,\n      terminal: false,\n    });\n\n    // Buffer for accumulating partial messages\n    let buffer = \"\";\n\n    rl.on(\"line\", async (line) => {\n      buffer += line;\n\n      // Try to parse as JSON\n      try {\n        const request = JSON.parse(buffer) as JsonRpcRequest;\n        buffer = \"\"; // Clear buffer on successful parse\n\n        if (this.debug) {\n          console.error(\"[MCP DEBUG] Received:\", JSON.stringify(request, null, 2));\n        }\n\n        if (this.handler) {\n          this.pendingRequests++;\n          try {\n            const response = await this.handler(request);\n            this.send(response);\n          } finally {\n            this.pendingRequests--;\n            this.maybeExit();\n          }\n        }\n      } catch {\n        // If parse fails, might be partial message - keep buffering\n        // Unless it looks like a complete but invalid message\n        if (line.trim().endsWith(\"}\")) {\n          this.sendError(null, -32700, \"Parse error: Invalid JSON\");\n          buffer = \"\";\n        }\n      }\n    });\n\n    rl.on(\"close\", () => {\n      this.stdinClosed = true;\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin closed, waiting for pending requests...\");\n      }\n      this.maybeExit();\n    });\n\n    // Handle errors gracefully\n    process.stdin.on(\"error\", (err) => {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] stdin error:\", err.message);\n      }\n    });\n  }\n\n  /**\n   * Exit if stdin is closed and no pending requests\n   */\n  private maybeExit(): void {\n    if (this.stdinClosed && this.pendingRequests === 0) {\n      if (this.debug) {\n        console.error(\"[MCP DEBUG] All requests complete, exiting\");\n      }\n      process.exit(0);\n    }\n  }\n\n  /**\n   * Send a JSON-RPC response to stdout\n   */\n  send(response: JsonRpcResponse): void {\n    const message = JSON.stringify(response);\n\n    if (this.debug) {\n      console.error(\"[MCP DEBUG] Sending:\", JSON.stringify(response, null, 2));\n    }\n\n    // Write to stdout with newline\n    process.stdout.write(message + \"\\n\");\n  }\n\n  /**\n   * Send an error response\n   */\n  sendError(id: string | number | null, code: number, message: string, data?: unknown): void {\n    this.send({\n      jsonrpc: \"2.0\",\n      id,\n      error: {\n        code,\n        message,\n        data,\n      },\n    });\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly API Client\n * Makes HTTP requests to the FHIRfly MCP endpoint\n */\n\nimport type {\n  JsonRpcRequest,\n  JsonRpcResponse,\n  McpServerConfig,\n  McpToolsListResult,\n  McpToolCallResult,\n} from \"./types.js\";\n\nexport class FhirflyClient {\n  private config: McpServerConfig;\n  private nextId = 1;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n  }\n\n  /**\n   * Send a JSON-RPC request to the FHIRfly MCP endpoint\n   */\n  async request(method: string, params?: Record<string, unknown>): Promise<JsonRpcResponse> {\n    const requestBody: JsonRpcRequest = {\n      jsonrpc: \"2.0\",\n      id: this.nextId++,\n      method,\n      params,\n    };\n\n    if (this.config.debug) {\n      console.error(`[MCP DEBUG] API Request: ${method}`, params);\n    }\n\n    try {\n      const response = await fetch(`${this.config.apiUrl}/mcp`, {\n        method: \"POST\",\n        headers: {\n          \"Content-Type\": \"application/json\",\n          \"x-api-key\": this.config.apiKey,\n          \"User-Agent\": \"@fhirfly-io/mcp-server\",\n        },\n        body: JSON.stringify(requestBody),\n      });\n\n      if (!response.ok) {\n        // Handle HTTP errors\n        if (response.status === 401) {\n          return {\n            jsonrpc: \"2.0\",\n            id: requestBody.id,\n            error: {\n              code: -32001,\n              message: \"Authentication failed. Check your FHIRFLY_API_KEY.\",\n            },\n          };\n        }\n\n        if (response.status === 429) {\n          // Retry once after Retry-After delay (cap at 10s)\n          const retryAfter = response.headers.get(\"Retry-After\");\n          const delaySec = Math.min(Number(retryAfter) || 1, 10);\n\n          if (this.config.debug) {\n            console.error(`[MCP DEBUG] Rate limited, retrying after ${delaySec}s`);\n          }\n\n          await new Promise((resolve) => setTimeout(resolve, delaySec * 1000));\n\n          const retryResponse = await fetch(`${this.config.apiUrl}/mcp`, {\n            method: \"POST\",\n            headers: {\n              \"Content-Type\": \"application/json\",\n              \"x-api-key\": this.config.apiKey,\n              \"User-Agent\": \"@fhirfly-io/mcp-server\",\n            },\n            body: JSON.stringify(requestBody),\n          });\n\n          if (!retryResponse.ok) {\n            return {\n              jsonrpc: \"2.0\",\n              id: requestBody.id,\n              error: {\n                code: -32002,\n                message: \"Rate limit exceeded. Please slow down requests.\",\n              },\n            };\n          }\n\n          const retryResult = (await retryResponse.json()) as JsonRpcResponse;\n\n          if (this.config.debug) {\n            console.error(\"[MCP DEBUG] Retry response:\", JSON.stringify(retryResult, null, 2));\n          }\n\n          return retryResult;\n        }\n\n        return {\n          jsonrpc: \"2.0\",\n          id: requestBody.id,\n          error: {\n            code: -32000,\n            message: `API error: ${response.status} ${response.statusText}`,\n          },\n        };\n      }\n\n      const result = (await response.json()) as JsonRpcResponse;\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Response:\", JSON.stringify(result, null, 2));\n      }\n\n      return result;\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] API Error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: requestBody.id,\n        error: {\n          code: -32003,\n          message: `Network error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Get list of available tools from FHIRfly\n   */\n  async listTools(): Promise<McpToolsListResult> {\n    const response = await this.request(\"tools/list\", {});\n\n    if (response.error) {\n      throw new Error(response.error.message);\n    }\n\n    return response.result as McpToolsListResult;\n  }\n\n  /**\n   * Call a tool on the FHIRfly API\n   */\n  async callTool(name: string, args: Record<string, unknown>): Promise<McpToolCallResult> {\n    const response = await this.request(\"tools/call\", {\n      name,\n      arguments: args,\n    });\n\n    if (response.error) {\n      return {\n        content: [\n          {\n            type: \"text\",\n            text: JSON.stringify({\n              error: response.error.message,\n              code: response.error.code,\n            }),\n          },\n        ],\n        isError: true,\n      };\n    }\n\n    return response.result as McpToolCallResult;\n  }\n}\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * MCP Protocol Types\n * Based on Model Context Protocol specification\n */\n\n// JSON-RPC 2.0 Types\nexport interface JsonRpcRequest {\n  jsonrpc: \"2.0\";\n  id: string | number;\n  method: string;\n  params?: Record<string, unknown>;\n}\n\nexport interface JsonRpcResponse {\n  jsonrpc: \"2.0\";\n  id: string | number | null;\n  result?: unknown;\n  error?: JsonRpcError;\n}\n\nexport interface JsonRpcError {\n  code: number;\n  message: string;\n  data?: unknown;\n}\n\n// MCP Protocol Types\nexport interface McpToolDefinition {\n  name: string;\n  description: string;\n  inputSchema: {\n    type: \"object\";\n    properties?: Record<string, unknown>;\n    required?: string[];\n  };\n}\n\nexport interface McpToolsListResult {\n  tools: McpToolDefinition[];\n}\n\nexport interface McpToolCallParams {\n  name: string;\n  arguments: Record<string, unknown>;\n}\n\nexport interface McpToolCallResult {\n  content: Array<{\n    type: \"text\" | \"image\" | \"resource\";\n    text?: string;\n    data?: string;\n    mimeType?: string;\n  }>;\n  isError?: boolean;\n}\n\n// Server Configuration\nexport interface McpServerConfig {\n  apiKey: string;\n  apiUrl: string;\n  debug: boolean;\n}\n\n// Standard MCP Error Codes\nexport const MCP_ERROR_CODES = {\n  PARSE_ERROR: -32700,\n  INVALID_REQUEST: -32600,\n  METHOD_NOT_FOUND: -32601,\n  INVALID_PARAMS: -32602,\n  INTERNAL_ERROR: -32603,\n} as const;\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\nexport const VERSION = \"0.2.0\";\n","// Copyright 2026 FHIRfly.io LLC. All rights reserved.\n// Licensed under the MIT License. See LICENSE file in the project root.\n/**\n * FHIRfly MCP Server\n * Main server class that handles MCP protocol messages\n */\n\nimport { StdioTransport } from \"./transport.js\";\nimport { FhirflyClient } from \"./client.js\";\nimport {\n  MCP_ERROR_CODES,\n  type JsonRpcRequest,\n  type JsonRpcResponse,\n  type McpServerConfig,\n  type McpToolCallParams,\n} from \"./types.js\";\nimport { VERSION } from \"./version.js\";\n\n// Server capabilities\nconst SERVER_INFO = {\n  name: \"fhirfly-mcp-server\",\n  version: VERSION,\n};\n\nconst SERVER_CAPABILITIES = {\n  tools: {},\n};\n\nexport class McpServer {\n  private transport: StdioTransport;\n  private client: FhirflyClient;\n  private config: McpServerConfig;\n  public initialized: boolean = false;\n\n  constructor(config: McpServerConfig) {\n    this.config = config;\n    this.transport = new StdioTransport(config.debug);\n    this.client = new FhirflyClient(config);\n  }\n\n  /**\n   * Start the MCP server\n   */\n  start(): void {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Starting FHIRfly MCP Server\");\n      console.error(\"[MCP DEBUG] API URL:\", this.config.apiUrl);\n      console.error(\"[MCP DEBUG] API Key:\", this.config.apiKey.slice(0, 10) + \"...\");\n    }\n\n    this.transport.setHandler(this.handleMessage.bind(this));\n    this.transport.start();\n  }\n\n  /**\n   * Handle incoming JSON-RPC messages\n   */\n  private async handleMessage(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      // Validate JSON-RPC request structure\n      if (request.jsonrpc !== \"2.0\" || !request.method) {\n        return {\n          jsonrpc: \"2.0\",\n          id: request.id ?? null,\n          error: {\n            code: MCP_ERROR_CODES.INVALID_REQUEST,\n            message: \"Invalid JSON-RPC request\",\n          },\n        };\n      }\n\n      // Route to appropriate handler\n      switch (request.method) {\n        case \"initialize\":\n          return this.handleInitialize(request);\n\n        case \"initialized\":\n          // Client notification that initialization is complete\n          this.initialized = true;\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            result: {},\n          };\n\n        case \"tools/list\":\n          return this.handleToolsList(request);\n\n        case \"tools/call\":\n          return this.handleToolsCall(request);\n\n        case \"ping\":\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            result: {},\n          };\n\n        default:\n          return {\n            jsonrpc: \"2.0\",\n            id: request.id,\n            error: {\n              code: MCP_ERROR_CODES.METHOD_NOT_FOUND,\n              message: `Unknown method: ${request.method}`,\n            },\n          };\n      }\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (this.config.debug) {\n        console.error(\"[MCP DEBUG] Handler error:\", message);\n      }\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INTERNAL_ERROR,\n          message: `Internal error: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Handle initialize request\n   */\n  private async handleInitialize(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    if (this.config.debug) {\n      console.error(\"[MCP DEBUG] Initialize request from client\");\n    }\n\n    return {\n      jsonrpc: \"2.0\",\n      id: request.id,\n      result: {\n        protocolVersion: \"2024-11-05\",\n        serverInfo: SERVER_INFO,\n        capabilities: SERVER_CAPABILITIES,\n      },\n    };\n  }\n\n  /**\n   * Handle tools/list request\n   */\n  private async handleToolsList(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    try {\n      const result = await this.client.listTools();\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        result,\n      };\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INTERNAL_ERROR,\n          message: `Failed to list tools: ${message}`,\n        },\n      };\n    }\n  }\n\n  /**\n   * Handle tools/call request\n   */\n  private async handleToolsCall(request: JsonRpcRequest): Promise<JsonRpcResponse> {\n    const params = request.params as McpToolCallParams | undefined;\n\n    if (!params?.name) {\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INVALID_PARAMS,\n          message: \"Missing tool name in params\",\n        },\n      };\n    }\n\n    try {\n      const result = await this.client.callTool(params.name, params.arguments ?? {});\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        result,\n      };\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      return {\n        jsonrpc: \"2.0\",\n        id: request.id,\n        error: {\n          code: MCP_ERROR_CODES.INTERNAL_ERROR,\n          message: `Tool call failed: ${message}`,\n        },\n      };\n    }\n  }\n}\n"]}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@fhirfly-io/mcp-server",
-  "version": "0.1.7",
+  "version": "0.2.1",
   "description": "FHIRfly MCP server for Claude Desktop - Healthcare reference data via Model Context Protocol",
   "author": "FHIRfly.io LLC <admin@fhirfly.io>",
   "license": "MIT",
@@ -8,10 +8,10 @@
   "homepage": "https://fhirfly.io/docs/mcp",
   "repository": {
     "type": "git",
-    "url": "git+https://github.com/FHIRfly-io/fhirfly-mcp-server.git"
+    "url": "git+https://gitlab.com/fhirfly-io/fhirfly-mcp-server.git"
   },
   "bugs": {
-    "url": "https://github.com/FHIRfly-io/fhirfly-mcp-server/issues"
+    "url": "https://gitlab.com/fhirfly-io/fhirfly-mcp-server/-/issues"
   },
   "keywords": [
     "fhirfly",
@@ -51,7 +51,8 @@
   "files": [
     "dist",
     "README.md",
-    "LICENSE"
+    "LICENSE",
+    "CHANGELOG.md"
   ],
   "engines": {
     "node": ">=18.0.0"