@fastino-ai/pioneer-cli 0.1.0 → 0.2.1

package/src/tools/wandb.ts

@@ -0,0 +1,348 @@
+/**
+ * Weights & Biases integration for experiment tracking
+ */
+
+import { spawn } from "child_process";
+import type { Tool, ToolResult } from "../agent/types.js";
+
+export interface WandbConfig {
+  apiKey?: string;
+  entity?: string;
+  project?: string;
+  timeout?: number;
+}
+
+// Check if wandb CLI is available
+export async function isWandbAvailable(): Promise<boolean> {
+  return new Promise((resolve) => {
+    const proc = spawn("wandb", ["--version"], { stdio: "pipe" });
+    proc.on("close", (code) => resolve(code === 0));
+    proc.on("error", () => resolve(false));
+  });
+}
+
+// Run wandb command
+async function runWandb(
+  args: string[],
+  options: WandbConfig = {}
+): Promise<{ stdout: string; stderr: string; exitCode: number }> {
+  const timeout = options.timeout || 60000;
+
+  return new Promise((resolve) => {
+    let stdout = "";
+    let stderr = "";
+    let timedOut = false;
+
+    const env: NodeJS.ProcessEnv = { ...process.env };
+    if (options.apiKey) env.WANDB_API_KEY = options.apiKey;
+    if (options.entity) env.WANDB_ENTITY = options.entity;
+    if (options.project) env.WANDB_PROJECT = options.project;
+
+    const proc = spawn("wandb", args, {
+      stdio: ["pipe", "pipe", "pipe"],
+      env,
+    });
+
+    const timer = setTimeout(() => {
+      timedOut = true;
+      proc.kill("SIGTERM");
+    }, timeout);
+
+    proc.stdout.on("data", (data: Buffer) => {
+      stdout += data.toString();
+    });
+
+    proc.stderr.on("data", (data: Buffer) => {
+      stderr += data.toString();
+    });
+
+    proc.on("close", (code) => {
+      clearTimeout(timer);
+      resolve({
+        stdout,
+        stderr,
+        exitCode: timedOut ? -1 : (code ?? -1),
+      });
+    });
+
+    proc.on("error", (err) => {
+      clearTimeout(timer);
+      resolve({
+        stdout: "",
+        stderr: err.message,
+        exitCode: -1,
+      });
+    });
+  });
+}
+
+export function createWandbLogTool(config: WandbConfig = {}): Tool {
+  return {
+    name: "wandb_log",
+    description: "Log metrics, artifacts, or data to Weights & Biases for experiment tracking.",
+    parameters: [
+      {
+        name: "run_name",
+        type: "string",
+        description: "Name for the W&B run",
+        required: true,
+      },
+      {
+        name: "metrics",
+        type: "object",
+        description: "Metrics to log as JSON object (e.g., {\"loss\": 0.5, \"accuracy\": 0.9})",
+        required: true,
+      },
+      {
+        name: "project",
+        type: "string",
+        description: "W&B project name (optional, uses config default)",
+        required: false,
+      },
+    ],
+
+    async execute(args: Record<string, unknown>): Promise<ToolResult> {
+      const runName = args.run_name as string;
+      const metrics = args.metrics as Record<string, unknown>;
+      const project = (args.project as string) || config.project;
+
+      if (!runName || !metrics) {
+        return {
+          toolCallId: "",
+          output: "",
+          success: false,
+          error: "run_name and metrics are required",
+        };
+      }
+
+      const available = await isWandbAvailable();
+      if (!available) {
+        return {
+          toolCallId: "",
+          output: "",
+          success: false,
+          error: "wandb CLI not installed. Run: pip install wandb",
+        };
+      }
+
+      // Create a Python script to log to wandb
+      const fs = await import("fs");
+      const path = await import("path");
+      const os = await import("os");
+
+      const tempDir = fs.mkdtempSync(path.join(os.tmpdir(), "wandb-"));
+      const tempFile = path.join(tempDir, "log_metrics.py");
+
+      const pythonCode = `
+import wandb
+import json
+
+metrics = json.loads('''${JSON.stringify(metrics)}''')
+run = wandb.init(
+    project="${project || "pioneer-agent"}",
+    name="${runName}",
+    reinit=True
+)
+wandb.log(metrics)
+wandb.finish()
+print(f"Logged metrics to W&B run: {run.url}")
+`;
+
+      fs.writeFileSync(tempFile, pythonCode);
+
+      try {
+        const env: NodeJS.ProcessEnv = { ...process.env };
+        if (config.apiKey) env.WANDB_API_KEY = config.apiKey;
+        if (config.entity) env.WANDB_ENTITY = config.entity;
+
+        return new Promise((resolve) => {
+          let stdout = "";
+          let stderr = "";
+
+          const proc = spawn("python3", [tempFile], {
+            stdio: ["pipe", "pipe", "pipe"],
+            env,
+          });
+
+          proc.stdout.on("data", (data: Buffer) => {
+            stdout += data.toString();
+          });
+
+          proc.stderr.on("data", (data: Buffer) => {
+            stderr += data.toString();
+          });
+
+          proc.on("close", (code) => {
+            let output = stdout;
+            if (stderr && !stderr.includes("wandb:")) {
+              output += (output ? "\n" : "") + stderr;
+            }
+
+            resolve({
+              toolCallId: "",
+              output: output || "Metrics logged successfully",
+              success: code === 0,
+              error: code !== 0 ? `Exit code: ${code}` : undefined,
+            });
+          });
+
+          proc.on("error", (err) => {
+            resolve({
+              toolCallId: "",
+              output: "",
+              success: false,
+              error: err.message,
+            });
+          });
+        });
+      } finally {
+        try {
+          fs.rmSync(tempDir, { recursive: true, force: true });
+        } catch {
+          // Ignore
+        }
+      }
+    },
+  };
+}
+
+export function createWandbQueryTool(config: WandbConfig = {}): Tool {
+  return {
+    name: "wandb_query",
+    description: "Query runs and metrics from Weights & Biases.",
+    parameters: [
+      {
+        name: "project",
+        type: "string",
+        description: "W&B project name to query",
+        required: true,
+      },
+      {
+        name: "filters",
+        type: "object",
+        description: "Filters for the query as JSON (e.g., {\"state\": \"finished\"})",
+        required: false,
+      },
+      {
+        name: "limit",
+        type: "number",
+        description: "Maximum number of runs to return (default: 10)",
+        required: false,
+      },
+    ],
+
+    async execute(args: Record<string, unknown>): Promise<ToolResult> {
+      const project = args.project as string;
+      const filters = (args.filters as Record<string, unknown>) || {};
+      const limit = (args.limit as number) || 10;
+
+      if (!project) {
+        return {
+          toolCallId: "",
+          output: "",
+          success: false,
+          error: "project is required",
+        };
+      }
+
+      const available = await isWandbAvailable();
+      if (!available) {
+        return {
+          toolCallId: "",
+          output: "",
+          success: false,
+          error: "wandb CLI not installed. Run: pip install wandb",
+        };
+      }
+
+      const fs = await import("fs");
+      const path = await import("path");
+      const os = await import("os");
+
+      const tempDir = fs.mkdtempSync(path.join(os.tmpdir(), "wandb-query-"));
+      const tempFile = path.join(tempDir, "query_runs.py");
+
+      const entity = config.entity ? `"${config.entity}"` : "None";
+      const filtersJson = JSON.stringify(filters);
+
+      const pythonCode = `
+import wandb
+import json
+
+api = wandb.Api()
+entity = ${entity}
+project = "${project}"
+
+path = f"{entity}/{project}" if entity else project
+runs = api.runs(path, filters=json.loads('${filtersJson}'))
+
+results = []
+for run in list(runs)[:${limit}]:
+    results.append({
+        "id": run.id,
+        "name": run.name,
+        "state": run.state,
+        "url": run.url,
+        "summary": dict(run.summary),
+        "config": dict(run.config),
+    })
+
+print(json.dumps(results, indent=2, default=str))
+`;
+
+      fs.writeFileSync(tempFile, pythonCode);
+
+      try {
+        const env: NodeJS.ProcessEnv = { ...process.env };
+        if (config.apiKey) env.WANDB_API_KEY = config.apiKey;
+
+        return new Promise((resolve) => {
+          let stdout = "";
+          let stderr = "";
+
+          const proc = spawn("python3", [tempFile], {
+            stdio: ["pipe", "pipe", "pipe"],
+            env,
+          });
+
+          proc.stdout.on("data", (data: Buffer) => {
+            stdout += data.toString();
+          });
+
+          proc.stderr.on("data", (data: Buffer) => {
+            stderr += data.toString();
+          });
+
+          proc.on("close", (code) => {
+            resolve({
+              toolCallId: "",
+              output: stdout || stderr || "(no results)",
+              success: code === 0,
+              error: code !== 0 ? `Exit code: ${code}` : undefined,
+            });
+          });
+
+          proc.on("error", (err) => {
+            resolve({
+              toolCallId: "",
+              output: "",
+              success: false,
+              error: err.message,
+            });
+          });
+        });
+      } finally {
+        try {
+          fs.rmSync(tempDir, { recursive: true, force: true });
+        } catch {
+          // Ignore
+        }
+      }
+    },
+  };
+}
+
+export function createWandbTools(config: WandbConfig = {}): Tool[] {
+  return [createWandbLogTool(config), createWandbQueryTool(config)];
+}
+

package/workspaces/0-skinny-mink-of-management/input/private/test.csv

@@ -0,0 +1,100 @@
+id,Acer_Capillipes,Acer_Circinatum,Acer_Mono,Acer_Opalus,Acer_Palmatum,Acer_Pictum,Acer_Platanoids,Acer_Rubrum,Acer_Rufinerve,Acer_Saccharinum,Alnus_Cordata,Alnus_Maximowiczii,Alnus_Rubra,Alnus_Sieboldiana,Alnus_Viridis,Arundinaria_Simonii,Betula_Austrosinensis,Betula_Pendula,Callicarpa_Bodinieri,Castanea_Sativa,Celtis_Koraiensis,Cercis_Siliquastrum,Cornus_Chinensis,Cornus_Controversa,Cornus_Macrophylla,Cotinus_Coggygria,Crataegus_Monogyna,Cytisus_Battandieri,Eucalyptus_Glaucescens,Eucalyptus_Neglecta,Eucalyptus_Urnigera,Fagus_Sylvatica,Ginkgo_Biloba,Ilex_Aquifolium,Ilex_Cornuta,Liquidambar_Styraciflua,Liriodendron_Tulipifera,Lithocarpus_Cleistocarpus,Lithocarpus_Edulis,Magnolia_Heptapeta,Magnolia_Salicifolia,Morus_Nigra,Olea_Europaea,Phildelphus,Populus_Adenopoda,Populus_Grandidentata,Populus_Nigra,Prunus_Avium,Prunus_X_Shmittii,Pterocarya_Stenoptera,Quercus_Afares,Quercus_Agrifolia,Quercus_Alnifolia,Quercus_Brantii,Quercus_Canariensis,Quercus_Castaneifolia,Quercus_Cerris,Quercus_Chrysolepis,Quercus_Coccifera,Quercus_Coccinea,Quercus_Crassifolia,Quercus_Crassipes,Quercus_Dolicholepis,Quercus_Ellipsoidalis,Quercus_Greggii,Quercus_Hartwissiana,Quercus_Ilex,Quercus_Imbricaria,Quercus_Infectoria_sub,Quercus_Kewensis,Quercus_Nigra,Quercus_Palustris,Quercus_Phellos,Quercus_Phillyraeoides,Quercus_Pontica,Quercus_Pubescens,Quercus_Pyrenaica,Quercus_Rhysophylla,Quercus_Rubra,Quercus_Semecarpifolia,Quercus_Shumardii,Quercus_Suber,Quercus_Texana,Quercus_Trojana,Quercus_Variabilis,Quercus_Vulcanica,Quercus_x_Hispanica,Quercus_x_Turneri,Rhododendron_x_Russellianum,Salix_Fragilis,Salix_Intergra,Sorbus_Aria,Tilia_Oliveri,Tilia_Platyphyllos,Tilia_Tomentosa,Ulmus_Bergmanniana,Viburnum_Tinus,Viburnum_x_Rhytidophylloides,Zelkova_Serrata
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package/workspaces/0-skinny-mink-of-management/input/public/description.md

@@ -0,0 +1,70 @@
+# Overview
+
+## Description
+There are estimated to be nearly half a million species of plant in the world. Classification of species has been historically problematic and often results in duplicate identifications.
+
+![bigleaves.jpg](https://storage.googleapis.com/kaggle-media/competitions/kaggle/5408/media/bigleaves.jpg)
+
+The objective of this playground competition is to use binary leaf images and extracted features, including shape, margin & texture, to accurately identify 99 species of plants. Leaves, due to their volume, prevalence, and unique characteristics, are an effective means of differentiating plant species. They also provide a fun introduction to applying techniques that involve image-based features.
+
+As a first step, try building a classifier that uses the provided pre-extracted features. Next, try creating a set of your own features. Finally, examine the errors you're making and see what you can do to improve.
+
+### Acknowledgments
+
+Kaggle is hosting this competition for the data science community to use for fun and education. This dataset originates from leaf images collected by  
+James Cope, Thibaut Beghin, Paolo Remagnino, & Sarah Barman of the Royal Botanic Gardens, Kew, UK.
+
+Charles Mallah, James Cope, James Orwell. Plant Leaf Classification Using Probabilistic Integration of Shape, Texture and Margin Features. Signal Processing, Pattern Recognition and Applications, in press. 2013.
+
+We thank the UCI machine learning repository for hosting the dataset.
+
+## Evaluation
+
+Submissions are evaluated using the multi-class logarithmic loss. Each image has been labeled with one true species. For each image, you must submit a set of predicted probabilities (one for every species). The formula is then,
+
+\text{logloss} = -\frac{1}{N} \sum_{i=1}^N \sum_{j=1}^M y_{ij} \log(p_{ij}),
+
+where $N$ is the number of images in the test set, $M$ is the number of species labels, $\log$ is the natural logarithm, $y_{ij}$ is 1 if observation $i$ is in class $j$ and 0 otherwise, and $p_{ij}$ is the predicted probability that observation $i$ belongs to class $j$.
+
+The submitted probabilities for a given device are not required to sum to one because they are rescaled prior to being scored (each row is divided by the row sum), but they need to be in the range of [0, 1]. In order to avoid the extremes of the log function, predicted probabilities are replaced with \\(max(min(p,1-10^{-15}),10^{-15})\\).
+### Submission File
+
+You must submit a csv file with the image id, all candidate species names, and a probability for each species. The order of the rows does not matter. The file must have a header and should look like the following:
+
+id,Acer_Capillipes,Acer_Circinatum,Acer_Mono,...
+2,0.1,0.5,0,0.2,...
+5,0,0.3,0,0.4,...
+6,0,0,0,0.7,...
+etc.
+
+## Prizes
+
+At competition close, 1-3 Kernels in each of the below categories will be selected by the Kaggle data science team as examples of excellence. The Kernel authors will receive newly designed (not yet printed!) Kaggle t-shirts.
+
+- Data exploration
+- Creative Feature engineering
+- Insightful visualizations
+
+## Citation
+
+Julia Elliott, Meghan O'Connell, Will Cukierski. (2016). Leaf Classification. Kaggle. https://kaggle.com/competitions/leaf-classification
+
+# Dataset Description
+
+The dataset consists approximately 1,584 images of leaf specimens (16 samples each of 99 species) which have been converted to binary black leaves against white backgrounds. Three sets of features are also provided per image: a shape contiguous descriptor, an interior texture histogram, and a fine-scale margin histogram. For each feature, a 64-attribute vector is given per leaf sample.
+
+Note that of the original 100 species, we have eliminated one on account of incomplete associated data in the original dataset.
+
+## File descriptions
+
+- **train.csv** - the training set
+- **test.csv** - the test set
+- **sample_submission.csv** - a sample submission file in the correct format
+- **images/** - the image files (each image is named with its corresponding id)
+
+## Data fields
+
+- **id** - an anonymous id unique to an image
+- **margin_1, margin_2, margin_3, ..., margin_64** - each of the 64 attribute vectors for the margin feature
+- **shape_1, shape_2, shape_3, ..., shape_64** - each of the 64 attribute vectors for the shape feature
+- **texture_1, texture_2, texture_3, ..., texture_64** - each of the 64 attribute vectors for the texture feature